Query 041384
Match_columns 580
No_of_seqs 634 out of 3302
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.7E-88 8.1E-93 711.0 65.8 572 2-579 163-734 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 8.6E-81 1.9E-85 655.3 64.0 562 2-571 62-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 7.8E-75 1.7E-79 595.7 59.6 487 91-579 84-571 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-68 3.4E-73 550.3 59.8 512 24-572 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2E-67 4.2E-72 541.0 51.3 461 2-469 98-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.4E-66 3E-71 536.0 52.0 489 2-532 381-910 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-34 1.2E-38 308.8 61.5 548 3-567 307-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-33 3.1E-38 305.5 61.4 545 3-563 341-898 (899)
9 PRK11447 cellulose synthase su 100.0 4.7E-25 1E-29 238.6 58.2 543 2-564 123-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.7E-24 3.7E-29 234.3 55.5 553 2-571 73-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.2E-23 1.6E-27 211.5 54.4 540 3-567 56-708 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.9E-19 4.1E-24 186.4 55.7 510 39-567 56-674 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 6.9E-21 1.5E-25 175.1 35.2 443 97-554 51-508 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-19 5E-24 182.7 43.6 419 97-566 130-572 (615)
15 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.6E-25 181.8 31.0 314 205-580 44-362 (389)
16 KOG4626 O-linked N-acetylgluco 99.9 6.9E-20 1.5E-24 168.6 31.1 420 133-567 52-487 (966)
17 KOG2002 TPR-containing nuclear 99.9 2.3E-17 5E-22 160.2 46.1 548 4-567 177-800 (1018)
18 PRK10049 pgaA outer membrane p 99.9 1.6E-17 3.5E-22 172.3 45.4 186 379-566 248-457 (765)
19 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.9E-22 169.1 40.7 368 177-565 17-403 (656)
20 KOG2002 TPR-containing nuclear 99.9 1.1E-16 2.4E-21 155.6 44.3 546 7-567 146-747 (1018)
21 PRK11788 tetratricopeptide rep 99.9 2E-18 4.3E-23 167.3 32.6 304 103-471 44-354 (389)
22 KOG4422 Uncharacterized conser 99.9 6.8E-17 1.5E-21 142.7 37.3 371 92-532 205-591 (625)
23 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-16 4.8E-21 161.0 44.8 430 66-537 130-577 (615)
24 PRK10049 pgaA outer membrane p 99.8 1.5E-16 3.2E-21 165.2 43.5 223 315-540 213-465 (765)
25 PRK15174 Vi polysaccharide exp 99.8 3.9E-17 8.5E-22 165.7 38.1 352 130-536 43-408 (656)
26 PRK14574 hmsH outer membrane p 99.8 5.9E-16 1.3E-20 157.4 44.0 425 72-539 43-521 (822)
27 PRK14574 hmsH outer membrane p 99.8 1.8E-15 3.9E-20 153.9 47.0 443 37-510 44-525 (822)
28 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.7E-19 127.7 39.6 428 93-567 115-592 (625)
29 KOG0495 HAT repeat protein [RN 99.8 9.3E-13 2E-17 123.1 49.2 509 47-576 365-889 (913)
30 KOG2003 TPR repeat-containing 99.8 8E-16 1.7E-20 137.0 26.4 204 344-551 501-709 (840)
31 KOG2076 RNA polymerase III tra 99.7 3.2E-13 6.9E-18 131.0 42.7 520 37-564 150-768 (895)
32 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.3E-17 127.4 44.9 559 4-567 152-851 (895)
33 KOG4318 Bicoid mRNA stability 99.7 4.5E-14 9.8E-19 136.1 34.9 518 12-569 11-598 (1088)
34 KOG0495 HAT repeat protein [RN 99.7 6.7E-11 1.5E-15 111.0 51.0 435 114-567 366-848 (913)
35 KOG0547 Translocase of outer m 99.7 1.3E-12 2.8E-17 118.0 34.4 408 97-563 118-564 (606)
36 PF13429 TPR_15: Tetratricopep 99.7 4.1E-16 8.8E-21 142.8 11.7 257 304-564 14-276 (280)
37 KOG2003 TPR repeat-containing 99.7 9.6E-14 2.1E-18 124.0 25.5 428 131-565 200-689 (840)
38 KOG1915 Cell cycle control pro 99.6 1.3E-10 2.8E-15 104.9 39.8 462 60-530 70-584 (677)
39 KOG1155 Anaphase-promoting com 99.6 2.1E-11 4.5E-16 109.7 34.4 327 229-564 162-494 (559)
40 KOG2047 mRNA splicing factor [ 99.6 1.1E-09 2.4E-14 102.8 44.7 519 30-559 105-717 (835)
41 COG2956 Predicted N-acetylgluc 99.6 6.7E-12 1.5E-16 107.6 27.5 311 209-580 48-362 (389)
42 PRK10747 putative protoheme IX 99.6 6E-12 1.3E-16 120.6 30.2 250 305-564 125-389 (398)
43 PRK10747 putative protoheme IX 99.6 6.6E-12 1.4E-16 120.3 29.3 218 308-532 163-391 (398)
44 KOG1915 Cell cycle control pro 99.5 9E-10 2E-14 99.6 39.1 459 94-564 73-584 (677)
45 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.7E-16 116.0 32.1 284 208-562 96-396 (409)
46 KOG4318 Bicoid mRNA stability 99.5 7.6E-12 1.6E-16 121.1 26.5 437 115-564 11-556 (1088)
47 KOG1173 Anaphase-promoting com 99.5 2.7E-10 5.9E-15 105.4 34.3 265 297-566 243-519 (611)
48 KOG1126 DNA-binding cell divis 99.5 4.2E-12 9.2E-17 119.5 22.8 277 283-568 335-623 (638)
49 TIGR00540 hemY_coli hemY prote 99.5 4.9E-11 1.1E-15 115.1 30.0 253 309-564 95-363 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 7.1E-14 1.5E-18 128.0 9.8 227 338-567 13-245 (280)
51 KOG1126 DNA-binding cell divis 99.5 2.9E-12 6.3E-17 120.6 20.2 246 313-566 334-587 (638)
52 KOG2047 mRNA splicing factor [ 99.5 1.6E-08 3.4E-13 95.3 42.1 505 2-525 113-717 (835)
53 KOG0547 Translocase of outer m 99.5 1.4E-09 3.1E-14 98.8 33.9 221 308-532 336-567 (606)
54 COG3071 HemY Uncharacterized e 99.5 5.2E-10 1.1E-14 99.3 29.3 283 209-531 97-390 (400)
55 TIGR02521 type_IV_pilW type IV 99.4 3.9E-11 8.4E-16 107.5 22.9 197 368-565 31-232 (234)
56 KOG1155 Anaphase-promoting com 99.4 4.2E-09 9.1E-14 95.2 34.7 282 240-531 236-536 (559)
57 KOG1173 Anaphase-promoting com 99.4 1.5E-09 3.3E-14 100.5 32.6 495 30-546 19-533 (611)
58 KOG3785 Uncharacterized conser 99.4 1.9E-09 4E-14 94.0 31.0 177 37-225 32-214 (557)
59 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.5E-14 96.3 28.5 259 299-565 119-390 (400)
60 COG2956 Predicted N-acetylgluc 99.4 2.3E-09 4.9E-14 92.4 27.7 288 107-462 48-346 (389)
61 KOG2376 Signal recognition par 99.4 2.6E-08 5.7E-13 93.0 36.3 249 303-560 229-515 (652)
62 KOG1840 Kinesin light chain [C 99.4 7.5E-10 1.6E-14 105.6 26.9 255 231-564 199-478 (508)
63 KOG1156 N-terminal acetyltrans 99.3 1E-08 2.2E-13 96.8 32.0 436 106-579 19-487 (700)
64 KOG1174 Anaphase-promoting com 99.3 1E-07 2.3E-12 85.1 35.5 296 209-543 209-512 (564)
65 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 80.4 6.1 50 194-243 1-50 (50)
66 KOG4162 Predicted calmodulin-b 99.3 5.9E-08 1.3E-12 93.6 35.5 399 161-566 319-784 (799)
67 KOG3785 Uncharacterized conser 99.3 8.1E-08 1.8E-12 84.0 32.6 463 70-566 29-515 (557)
68 PRK12370 invasion protein regu 99.3 1.3E-09 2.9E-14 109.4 25.5 242 313-566 276-536 (553)
69 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.6E-16 78.7 6.6 50 296-345 1-50 (50)
70 KOG1156 N-terminal acetyltrans 99.3 1.8E-06 4E-11 82.0 42.2 260 301-566 374-689 (700)
71 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.3E-14 94.4 18.4 227 303-566 228-459 (478)
72 TIGR02521 type_IV_pilW type IV 99.2 3.6E-09 7.8E-14 94.7 23.2 199 299-532 32-233 (234)
73 PRK11189 lipoprotein NlpI; Pro 99.2 6.1E-10 1.3E-14 102.1 16.6 226 308-541 36-275 (296)
74 PRK12370 invasion protein regu 99.2 2.9E-09 6.3E-14 106.9 22.9 211 347-565 275-502 (553)
75 PF12569 NARP1: NMDA receptor- 99.2 2.4E-07 5.2E-12 89.9 34.9 254 302-561 198-516 (517)
76 KOG1174 Anaphase-promoting com 99.2 8.2E-07 1.8E-11 79.6 34.9 267 295-569 229-504 (564)
77 KOG4162 Predicted calmodulin-b 99.2 4.8E-07 1E-11 87.6 35.5 132 401-537 652-789 (799)
78 COG3063 PilF Tfp pilus assembl 99.2 4.3E-09 9.3E-14 86.5 17.9 185 372-558 39-229 (250)
79 KOG3616 Selective LIM binding 99.2 4.6E-07 9.9E-12 87.0 32.9 221 306-561 740-962 (1636)
80 PF12569 NARP1: NMDA receptor- 99.2 1.2E-08 2.6E-13 98.9 23.1 255 307-567 13-293 (517)
81 KOG1840 Kinesin light chain [C 99.1 1.4E-07 3E-12 90.5 28.5 236 167-462 201-478 (508)
82 KOG0985 Vesicle coat protein c 99.1 4E-06 8.7E-11 83.6 38.6 345 30-421 841-1216(1666)
83 COG3063 PilF Tfp pilus assembl 99.1 3.4E-08 7.3E-13 81.4 20.0 198 336-536 38-241 (250)
84 KOG2376 Signal recognition par 99.1 2E-06 4.4E-11 80.8 33.7 408 101-566 19-488 (652)
85 KOG4340 Uncharacterized conser 99.1 6.1E-07 1.3E-11 76.8 26.7 385 131-565 12-443 (459)
86 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.6E-12 87.0 24.6 216 347-571 40-271 (296)
87 KOG0985 Vesicle coat protein c 99.0 1.1E-05 2.4E-10 80.6 37.0 187 344-561 1059-1245(1666)
88 KOG1129 TPR repeat-containing 99.0 2.2E-08 4.7E-13 86.6 15.9 230 271-537 228-464 (478)
89 KOG3616 Selective LIM binding 99.0 4.7E-06 1E-10 80.4 32.7 345 30-423 560-906 (1636)
90 KOG0548 Molecular co-chaperone 99.0 9.7E-07 2.1E-11 82.1 26.8 89 477-565 365-455 (539)
91 PF04733 Coatomer_E: Coatomer 99.0 9.4E-09 2E-13 92.7 13.8 78 486-563 183-263 (290)
92 KOG4340 Uncharacterized conser 99.0 4.9E-07 1.1E-11 77.4 21.7 317 65-396 12-338 (459)
93 cd05804 StaR_like StaR_like; a 98.9 7.8E-06 1.7E-10 78.2 32.8 255 308-566 53-337 (355)
94 KOG3617 WD40 and TPR repeat-co 98.9 4.1E-06 8.8E-11 81.8 28.3 147 62-221 725-883 (1416)
95 KOG1127 TPR repeat-containing 98.9 2E-05 4.3E-10 78.9 32.9 527 29-564 494-1103(1238)
96 PRK04841 transcriptional regul 98.9 1.3E-05 2.8E-10 87.1 35.9 261 306-566 460-761 (903)
97 KOG0624 dsRNA-activated protei 98.9 1E-05 2.3E-10 70.9 27.4 324 163-541 36-380 (504)
98 PF04733 Coatomer_E: Coatomer 98.9 9.7E-08 2.1E-12 86.2 16.0 225 303-538 40-272 (290)
99 KOG3617 WD40 and TPR repeat-co 98.9 1.6E-05 3.6E-10 77.8 31.4 256 26-325 725-994 (1416)
100 KOG1125 TPR repeat-containing 98.9 7.3E-08 1.6E-12 90.1 15.2 216 344-565 296-527 (579)
101 KOG0548 Molecular co-chaperone 98.9 2.1E-06 4.6E-11 79.9 24.3 238 301-549 227-473 (539)
102 TIGR03302 OM_YfiO outer membra 98.9 3.6E-07 7.7E-12 81.5 18.7 180 367-566 32-233 (235)
103 PRK10370 formate-dependent nit 98.8 4.5E-07 9.8E-12 77.2 17.1 119 447-567 52-175 (198)
104 PRK04841 transcriptional regul 98.8 8.3E-05 1.8E-09 81.0 37.5 162 301-462 576-759 (903)
105 PRK15359 type III secretion sy 98.8 3.4E-07 7.5E-12 73.7 13.8 105 439-545 29-135 (144)
106 cd05804 StaR_like StaR_like; a 98.7 4.3E-05 9.4E-10 73.1 29.9 266 299-566 7-294 (355)
107 KOG1070 rRNA processing protei 98.7 1.9E-06 4.2E-11 88.8 20.7 162 401-567 1499-1665(1710)
108 PRK15359 type III secretion sy 98.7 1.1E-06 2.3E-11 70.8 14.4 95 473-567 27-123 (144)
109 KOG1128 Uncharacterized conser 98.7 4.5E-06 9.9E-11 80.6 20.5 188 364-566 394-583 (777)
110 KOG1070 rRNA processing protei 98.7 8.1E-06 1.8E-10 84.4 23.1 227 331-558 1456-1693(1710)
111 PF12854 PPR_1: PPR repeat 98.7 2.6E-08 5.6E-13 56.6 3.2 33 58-90 2-34 (34)
112 PRK15179 Vi polysaccharide bio 98.6 6.4E-06 1.4E-10 83.5 21.4 135 399-537 86-223 (694)
113 KOG0624 dsRNA-activated protei 98.6 0.00024 5.3E-09 62.7 27.5 179 295-497 186-368 (504)
114 COG5010 TadD Flp pilus assembl 98.6 4.7E-06 1E-10 70.6 16.7 156 403-561 70-227 (257)
115 KOG1127 TPR repeat-containing 98.6 0.00028 6.1E-09 71.1 30.8 473 65-557 494-1028(1238)
116 PLN02789 farnesyltranstransfer 98.6 4.8E-05 1E-09 69.9 23.9 177 384-564 88-301 (320)
117 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 54.2 4.1 32 465-496 2-33 (34)
118 KOG1128 Uncharacterized conser 98.6 4.2E-06 9.2E-11 80.8 17.1 218 331-566 396-617 (777)
119 PRK15363 pathogenicity island 98.5 1.3E-06 2.8E-11 68.8 11.0 97 470-566 35-133 (157)
120 PRK10370 formate-dependent nit 98.5 1.8E-05 4E-10 67.5 18.3 155 375-540 23-182 (198)
121 COG5010 TadD Flp pilus assembl 98.5 1E-05 2.2E-10 68.6 16.2 155 372-529 70-229 (257)
122 TIGR03302 OM_YfiO outer membra 98.5 9E-06 1.9E-10 72.5 17.1 183 330-533 30-234 (235)
123 TIGR02552 LcrH_SycD type III s 98.5 3.6E-06 7.7E-11 67.6 12.4 94 473-566 20-115 (135)
124 KOG1125 TPR repeat-containing 98.5 1.6E-05 3.5E-10 74.9 17.9 247 308-558 295-564 (579)
125 KOG3060 Uncharacterized conser 98.5 3E-05 6.5E-10 65.3 17.3 192 348-542 27-231 (289)
126 PRK14720 transcript cleavage f 98.4 2.5E-05 5.5E-10 80.1 20.1 227 296-562 29-280 (906)
127 PLN02789 farnesyltranstransfer 98.4 2E-05 4.4E-10 72.3 17.5 187 378-568 47-253 (320)
128 KOG1914 mRNA cleavage and poly 98.4 0.0018 3.9E-08 61.1 33.1 150 415-565 347-501 (656)
129 KOG2053 Mitochondrial inherita 98.4 0.0032 7E-08 63.1 40.1 159 401-563 438-606 (932)
130 COG4783 Putative Zn-dependent 98.4 0.00012 2.7E-09 67.9 20.9 136 408-565 315-454 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.6E-05 3.5E-10 74.4 14.9 121 437-562 172-294 (395)
132 COG4783 Putative Zn-dependent 98.3 0.00017 3.7E-09 67.0 20.5 186 330-537 271-460 (484)
133 KOG3081 Vesicle coat complex C 98.3 0.00011 2.4E-09 62.5 17.7 246 305-566 15-272 (299)
134 KOG3060 Uncharacterized conser 98.3 0.00029 6.2E-09 59.6 19.8 188 309-500 23-222 (289)
135 KOG3081 Vesicle coat complex C 98.3 0.00036 7.8E-09 59.5 20.1 175 356-537 96-277 (299)
136 PRK15179 Vi polysaccharide bio 98.3 0.00018 4E-09 73.2 22.0 140 364-507 82-227 (694)
137 KOG1914 mRNA cleavage and poly 98.3 0.0039 8.4E-08 59.0 32.0 130 60-192 17-164 (656)
138 PF09976 TPR_21: Tetratricopep 98.3 4.6E-05 1E-09 61.7 14.0 115 447-562 24-144 (145)
139 TIGR02552 LcrH_SycD type III s 98.2 5E-05 1.1E-09 60.9 13.7 115 421-539 5-122 (135)
140 PF13414 TPR_11: TPR repeat; P 98.2 5.6E-06 1.2E-10 57.1 6.5 65 501-565 2-67 (69)
141 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.6E-11 49.1 4.4 35 197-231 1-35 (35)
142 PF12895 Apc3: Anaphase-promot 98.2 2.7E-06 5.7E-11 61.4 4.9 78 483-561 2-83 (84)
143 PF13432 TPR_16: Tetratricopep 98.2 6.3E-06 1.4E-10 56.0 6.4 60 508-567 3-62 (65)
144 cd00189 TPR Tetratricopeptide 98.2 2.6E-05 5.7E-10 58.0 10.5 94 473-566 3-98 (100)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.8E-10 60.1 11.4 92 475-566 7-106 (119)
146 TIGR00756 PPR pentatricopeptid 98.2 3.8E-06 8.2E-11 48.7 4.2 35 95-129 1-35 (35)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00011 2.3E-09 69.0 15.7 124 370-497 171-295 (395)
148 PF13812 PPR_3: Pentatricopept 98.1 4.4E-06 9.5E-11 48.0 4.2 33 197-229 2-34 (34)
149 KOG2053 Mitochondrial inherita 98.1 0.014 3.1E-07 58.8 36.7 65 504-568 438-505 (932)
150 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 47.7 4.0 34 94-127 1-34 (34)
151 PRK14720 transcript cleavage f 98.1 0.0049 1.1E-07 63.9 27.1 168 195-428 30-198 (906)
152 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.8E-09 57.7 14.3 123 402-528 15-144 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00014 3.1E-09 56.7 12.4 105 436-540 4-114 (119)
154 COG4235 Cytochrome c biogenesi 98.0 0.00011 2.4E-09 64.3 12.2 109 466-574 152-265 (287)
155 PLN03088 SGT1, suppressor of 98.0 3.4E-05 7.4E-10 72.7 9.8 105 440-546 8-114 (356)
156 PRK02603 photosystem I assembl 98.0 0.00013 2.9E-09 61.1 11.5 94 473-566 38-150 (172)
157 KOG0553 TPR repeat-containing 97.9 5.5E-05 1.2E-09 65.7 8.6 111 441-553 88-200 (304)
158 PF14559 TPR_19: Tetratricopep 97.9 1.8E-05 3.9E-10 54.3 4.8 55 513-567 2-56 (68)
159 CHL00033 ycf3 photosystem I as 97.9 0.00016 3.5E-09 60.4 11.0 94 469-562 34-139 (168)
160 PF13371 TPR_9: Tetratricopept 97.9 5.8E-05 1.3E-09 52.7 6.8 59 509-567 2-60 (73)
161 PF04840 Vps16_C: Vps16, C-ter 97.9 0.023 5E-07 52.3 27.7 79 375-459 184-262 (319)
162 PF12895 Apc3: Anaphase-promot 97.8 7.4E-05 1.6E-09 53.8 6.7 80 448-527 3-83 (84)
163 PF05843 Suf: Suppressor of fo 97.8 0.00069 1.5E-08 61.6 14.5 134 401-537 3-142 (280)
164 KOG0553 TPR repeat-containing 97.8 0.00025 5.3E-09 61.8 10.8 98 406-508 88-188 (304)
165 PRK02603 photosystem I assembl 97.8 0.001 2.2E-08 55.7 14.3 116 400-535 36-153 (172)
166 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.9E-10 43.2 3.4 31 197-227 1-31 (31)
167 PF07079 DUF1347: Protein of u 97.8 0.036 7.9E-07 51.6 39.2 231 325-562 252-521 (549)
168 PLN03088 SGT1, suppressor of 97.8 0.00071 1.5E-08 63.9 13.8 101 405-509 8-110 (356)
169 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 8.9E-10 42.7 3.4 31 95-125 1-31 (31)
170 PRK10153 DNA-binding transcrip 97.7 0.001 2.3E-08 65.6 15.3 66 501-567 419-484 (517)
171 PRK15331 chaperone protein Sic 97.7 0.00041 8.9E-09 55.2 10.0 89 476-564 43-133 (165)
172 PF14938 SNAP: Soluble NSF att 97.7 0.0029 6.4E-08 57.8 16.8 92 442-533 122-227 (282)
173 PRK10153 DNA-binding transcrip 97.7 0.002 4.4E-08 63.6 16.1 139 397-537 335-488 (517)
174 PF13432 TPR_16: Tetratricopep 97.7 0.00015 3.2E-09 49.1 6.0 61 476-536 3-65 (65)
175 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 50.2 10.3 90 442-533 8-99 (100)
176 PF04840 Vps16_C: Vps16, C-ter 97.7 0.045 9.7E-07 50.5 23.6 78 273-357 184-261 (319)
177 PF08579 RPM2: Mitochondrial r 97.6 0.00091 2E-08 49.0 9.2 78 303-380 30-116 (120)
178 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 62.6 12.5 119 328-446 61-185 (429)
179 PF05843 Suf: Suppressor of fo 97.6 0.00074 1.6E-08 61.4 11.0 129 435-565 2-136 (280)
180 PF14559 TPR_19: Tetratricopep 97.6 0.00014 3.1E-09 49.8 4.7 61 482-542 3-65 (68)
181 PF10037 MRP-S27: Mitochondria 97.5 0.0012 2.6E-08 62.5 11.7 118 162-279 63-186 (429)
182 PRK10866 outer membrane biogen 97.5 0.018 3.9E-07 51.0 18.6 57 507-563 180-239 (243)
183 COG4700 Uncharacterized protei 97.5 0.015 3.1E-07 47.1 15.6 127 431-559 86-216 (251)
184 PF14938 SNAP: Soluble NSF att 97.5 0.041 9E-07 50.3 21.3 157 200-400 98-269 (282)
185 PF12688 TPR_5: Tetratrico pep 97.5 0.0023 5E-08 48.9 10.7 84 478-561 9-100 (120)
186 PRK10803 tol-pal system protei 97.5 0.0013 2.8E-08 58.6 10.7 100 437-536 146-251 (263)
187 KOG1538 Uncharacterized conser 97.5 0.063 1.4E-06 52.3 22.0 88 435-532 748-847 (1081)
188 CHL00033 ycf3 photosystem I as 97.5 0.0032 6.9E-08 52.5 12.5 99 438-536 39-154 (168)
189 KOG0550 Molecular chaperone (D 97.4 0.003 6.4E-08 57.6 12.4 156 407-568 177-353 (486)
190 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.6E-09 41.4 2.5 33 525-557 2-34 (34)
191 PF13281 DUF4071: Domain of un 97.4 0.06 1.3E-06 50.1 21.0 185 373-571 146-363 (374)
192 PF08579 RPM2: Mitochondrial r 97.4 0.0038 8.3E-08 45.9 10.1 78 201-278 30-116 (120)
193 PF13428 TPR_14: Tetratricopep 97.4 0.0005 1.1E-08 42.0 4.8 42 503-544 2-43 (44)
194 KOG1538 Uncharacterized conser 97.4 0.085 1.8E-06 51.4 21.5 86 334-428 748-846 (1081)
195 PF06239 ECSIT: Evolutionarily 97.4 0.0023 5E-08 53.4 9.9 97 287-383 34-153 (228)
196 COG4700 Uncharacterized protei 97.4 0.055 1.2E-06 43.9 17.1 121 366-491 87-214 (251)
197 PF13414 TPR_11: TPR repeat; P 97.3 0.00065 1.4E-08 46.6 5.4 64 470-533 3-69 (69)
198 PF12688 TPR_5: Tetratrico pep 97.3 0.013 2.7E-07 44.9 12.6 91 405-495 7-100 (120)
199 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0017 3.7E-08 60.8 9.2 62 470-531 75-141 (453)
200 PF13424 TPR_12: Tetratricopep 97.3 0.00064 1.4E-08 48.1 5.2 62 503-564 6-74 (78)
201 KOG2041 WD40 repeat protein [G 97.2 0.27 5.9E-06 48.6 26.9 205 126-357 689-902 (1189)
202 KOG1130 Predicted G-alpha GTPa 97.2 0.0044 9.6E-08 56.4 10.6 257 307-564 26-343 (639)
203 PRK15363 pathogenicity island 97.2 0.013 2.8E-07 46.7 11.7 88 375-463 42-132 (157)
204 PF09205 DUF1955: Domain of un 97.1 0.074 1.6E-06 40.4 14.5 140 410-568 13-152 (161)
205 PRK10803 tol-pal system protei 97.1 0.011 2.4E-07 52.7 12.5 86 481-566 154-247 (263)
206 KOG2280 Vacuolar assembly/sort 97.1 0.4 8.6E-06 48.0 29.7 136 122-259 425-574 (829)
207 KOG1585 Protein required for f 97.1 0.14 3.1E-06 43.6 17.4 86 473-559 153-250 (308)
208 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.27 6E-06 45.9 28.0 448 49-537 30-537 (660)
209 PF03704 BTAD: Bacterial trans 97.1 0.0027 5.9E-08 51.5 7.6 70 503-572 63-137 (146)
210 PF07079 DUF1347: Protein of u 97.1 0.28 6.1E-06 46.0 35.0 448 3-506 18-529 (549)
211 PRK10866 outer membrane biogen 97.0 0.21 4.5E-06 44.3 20.6 58 304-363 38-99 (243)
212 PF13371 TPR_9: Tetratricopept 97.0 0.0033 7.1E-08 43.7 6.9 65 478-542 3-69 (73)
213 COG4235 Cytochrome c biogenesi 97.0 0.038 8.2E-07 48.9 14.4 110 431-543 153-267 (287)
214 KOG0543 FKBP-type peptidyl-pro 97.0 0.022 4.8E-07 52.4 13.2 95 471-565 258-355 (397)
215 PF06239 ECSIT: Evolutionarily 97.0 0.009 1.9E-07 50.0 9.7 72 210-281 66-153 (228)
216 PF13525 YfiO: Outer membrane 97.0 0.092 2E-06 45.3 16.6 50 508-557 147-199 (203)
217 KOG2796 Uncharacterized conser 96.9 0.017 3.7E-07 49.5 11.2 138 400-538 178-322 (366)
218 KOG2796 Uncharacterized conser 96.9 0.12 2.6E-06 44.5 15.5 126 439-565 182-315 (366)
219 KOG2280 Vacuolar assembly/sort 96.8 0.69 1.5E-05 46.4 25.7 108 436-559 686-793 (829)
220 COG3898 Uncharacterized membra 96.7 0.45 9.8E-06 43.7 23.7 192 65-265 84-297 (531)
221 KOG2041 WD40 repeat protein [G 96.7 0.73 1.6E-05 45.8 24.4 170 60-252 689-873 (1189)
222 PRK11906 transcriptional regul 96.7 0.039 8.3E-07 52.2 12.8 143 414-559 273-430 (458)
223 COG3898 Uncharacterized membra 96.7 0.5 1.1E-05 43.4 24.4 243 310-565 132-392 (531)
224 PF13525 YfiO: Outer membrane 96.5 0.45 9.7E-06 41.0 18.7 59 304-362 11-71 (203)
225 PF13512 TPR_18: Tetratricopep 96.5 0.071 1.5E-06 41.7 11.2 89 478-566 18-129 (142)
226 KOG1941 Acetylcholine receptor 96.5 0.039 8.3E-07 49.8 10.6 125 438-562 126-272 (518)
227 KOG0543 FKBP-type peptidyl-pro 96.4 0.019 4.1E-07 52.8 8.2 67 502-568 257-323 (397)
228 KOG1258 mRNA processing protei 96.3 1.2 2.5E-05 43.7 31.8 180 367-550 296-489 (577)
229 KOG2610 Uncharacterized conser 96.3 0.14 3E-06 45.9 12.8 159 411-572 115-283 (491)
230 KOG1130 Predicted G-alpha GTPa 96.2 0.047 1E-06 50.1 10.0 263 103-393 26-340 (639)
231 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.1 2.4E-05 42.1 32.2 128 435-564 398-530 (660)
232 PF12921 ATP13: Mitochondrial 96.2 0.076 1.7E-06 41.2 9.8 52 429-480 47-98 (126)
233 KOG2114 Vacuolar assembly/sort 96.2 1.8 4E-05 44.2 23.9 53 373-425 710-762 (933)
234 KOG4555 TPR repeat-containing 96.1 0.079 1.7E-06 40.1 9.0 88 479-566 52-145 (175)
235 PF13424 TPR_12: Tetratricopep 96.1 0.025 5.3E-07 39.8 6.3 27 504-530 48-74 (78)
236 COG4105 ComL DNA uptake lipopr 96.1 0.88 1.9E-05 39.6 18.8 56 507-562 172-230 (254)
237 COG3118 Thioredoxin domain-con 96.1 0.47 1E-05 42.1 14.8 119 444-565 144-265 (304)
238 COG1729 Uncharacterized protei 96.0 0.059 1.3E-06 47.1 9.4 102 436-538 144-251 (262)
239 PRK11619 lytic murein transgly 95.9 2.5 5.5E-05 43.6 31.3 48 297-345 128-175 (644)
240 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.065 1.4E-06 50.7 9.5 61 433-496 74-138 (453)
241 PF13281 DUF4071: Domain of un 95.9 1.4 3E-05 41.4 17.9 165 401-566 143-335 (374)
242 COG1729 Uncharacterized protei 95.9 0.13 2.9E-06 45.0 10.7 92 402-496 145-241 (262)
243 KOG0550 Molecular chaperone (D 95.9 1.6 3.4E-05 40.8 20.5 84 378-463 259-350 (486)
244 PF03704 BTAD: Bacterial trans 95.8 0.098 2.1E-06 42.3 9.6 72 300-372 64-140 (146)
245 PF10300 DUF3808: Protein of u 95.8 0.66 1.4E-05 45.9 16.8 113 448-563 247-374 (468)
246 PF09205 DUF1955: Domain of un 95.8 0.62 1.3E-05 35.7 12.8 68 297-365 85-152 (161)
247 COG0457 NrfG FOG: TPR repeat [ 95.8 1.3 2.7E-05 39.2 26.4 191 372-564 63-264 (291)
248 PF12921 ATP13: Mitochondrial 95.6 0.13 2.8E-06 39.9 8.8 50 125-174 48-97 (126)
249 smart00299 CLH Clathrin heavy 95.6 0.94 2E-05 36.2 15.6 127 401-547 9-136 (140)
250 PRK15331 chaperone protein Sic 95.5 0.43 9.4E-06 38.5 11.5 86 408-497 46-132 (165)
251 KOG3941 Intermediate in Toll s 95.5 0.15 3.3E-06 44.4 9.5 101 283-383 50-173 (406)
252 COG3118 Thioredoxin domain-con 95.4 1.9 4E-05 38.5 15.8 149 407-557 142-293 (304)
253 PF07719 TPR_2: Tetratricopept 95.3 0.059 1.3E-06 30.3 4.6 30 505-534 4-33 (34)
254 PF10300 DUF3808: Protein of u 95.2 0.88 1.9E-05 45.0 15.3 116 413-530 247-375 (468)
255 KOG4555 TPR repeat-containing 95.1 0.086 1.9E-06 40.0 6.0 57 509-565 50-106 (175)
256 PF00515 TPR_1: Tetratricopept 95.1 0.052 1.1E-06 30.6 4.0 31 504-534 3-33 (34)
257 PF04184 ST7: ST7 protein; In 95.0 0.86 1.9E-05 43.7 13.6 67 473-539 262-333 (539)
258 KOG1920 IkappaB kinase complex 95.0 3.3 7E-05 44.3 18.7 138 375-528 915-1052(1265)
259 PF08631 SPO22: Meiosis protei 95.0 2.9 6.2E-05 38.2 23.8 17 512-528 256-272 (278)
260 PRK11906 transcriptional regul 94.9 1.9 4.1E-05 41.3 15.6 141 383-528 273-433 (458)
261 PF04184 ST7: ST7 protein; In 94.9 2.1 4.7E-05 41.1 15.8 100 438-537 263-381 (539)
262 PF13512 TPR_18: Tetratricopep 94.8 0.46 1E-05 37.3 9.6 61 508-568 16-79 (142)
263 PF04053 Coatomer_WDAD: Coatom 94.8 0.75 1.6E-05 44.8 13.1 149 74-255 272-426 (443)
264 PF13176 TPR_7: Tetratricopept 94.7 0.073 1.6E-06 30.5 3.9 26 538-563 1-26 (36)
265 KOG2610 Uncharacterized conser 94.7 0.44 9.5E-06 42.8 10.3 115 445-561 114-234 (491)
266 PF04053 Coatomer_WDAD: Coatom 94.5 1 2.2E-05 43.9 13.4 156 376-561 269-427 (443)
267 COG4649 Uncharacterized protei 94.5 1.5 3.2E-05 35.5 11.7 122 409-530 68-195 (221)
268 KOG1920 IkappaB kinase complex 94.4 8.6 0.00019 41.4 23.5 52 375-426 972-1026(1265)
269 PF02259 FAT: FAT domain; Int 94.4 4.8 0.0001 38.3 21.4 150 398-549 145-305 (352)
270 PF13428 TPR_14: Tetratricopep 94.3 0.1 2.3E-06 31.6 4.2 33 536-568 1-33 (44)
271 KOG4234 TPR repeat-containing 94.3 0.23 4.9E-06 41.0 7.1 102 442-545 103-211 (271)
272 COG3629 DnrI DNA-binding trans 94.3 0.31 6.7E-06 43.5 8.5 59 472-530 155-215 (280)
273 KOG2066 Vacuolar assembly/sort 94.2 7.6 0.00016 39.7 23.7 141 165-325 392-532 (846)
274 KOG3941 Intermediate in Toll s 94.1 0.8 1.7E-05 40.2 10.4 97 193-289 64-181 (406)
275 smart00299 CLH Clathrin heavy 94.0 2.6 5.5E-05 33.7 14.9 42 339-381 13-54 (140)
276 PF07719 TPR_2: Tetratricopept 93.9 0.13 2.8E-06 28.8 3.8 30 537-566 2-31 (34)
277 PF09613 HrpB1_HrpK: Bacterial 93.7 0.61 1.3E-05 37.5 8.4 82 472-553 9-95 (160)
278 TIGR02561 HrpB1_HrpK type III 93.7 0.49 1.1E-05 37.2 7.7 72 482-553 22-95 (153)
279 PF07035 Mic1: Colon cancer-as 93.6 3.5 7.5E-05 33.8 14.4 135 49-225 15-149 (167)
280 PF02259 FAT: FAT domain; Int 93.6 3.4 7.3E-05 39.4 15.3 67 500-566 144-214 (352)
281 PF13176 TPR_7: Tetratricopept 93.5 0.14 3.1E-06 29.3 3.6 27 504-530 1-27 (36)
282 PF00515 TPR_1: Tetratricopept 93.5 0.16 3.4E-06 28.6 3.7 30 537-566 2-31 (34)
283 KOG0890 Protein kinase of the 93.4 20 0.00043 42.1 24.0 248 306-566 1457-1732(2382)
284 KOG2114 Vacuolar assembly/sort 93.4 11 0.00024 39.0 22.2 146 169-325 372-517 (933)
285 COG2976 Uncharacterized protei 93.3 1.2 2.6E-05 36.9 9.5 54 512-566 136-189 (207)
286 COG0457 NrfG FOG: TPR repeat [ 93.1 5.6 0.00012 34.9 25.8 218 313-534 38-268 (291)
287 PF09613 HrpB1_HrpK: Bacterial 93.0 1.7 3.8E-05 34.9 9.9 119 434-557 7-130 (160)
288 PF13181 TPR_8: Tetratricopept 92.9 0.24 5.2E-06 27.8 3.8 29 505-533 4-32 (34)
289 PRK09687 putative lyase; Provi 92.5 8.2 0.00018 35.2 26.9 137 397-546 140-277 (280)
290 KOG1941 Acetylcholine receptor 92.4 9.1 0.0002 35.3 19.1 125 338-462 127-274 (518)
291 PF13170 DUF4003: Protein of u 92.1 9.6 0.00021 35.0 15.5 133 212-375 78-224 (297)
292 PF13174 TPR_6: Tetratricopept 91.8 0.38 8.3E-06 26.6 3.8 25 540-564 4-28 (33)
293 PF10602 RPN7: 26S proteasome 91.8 4.4 9.6E-05 33.9 11.6 96 401-496 38-139 (177)
294 COG2976 Uncharacterized protei 91.8 6.8 0.00015 32.7 12.5 114 417-533 70-190 (207)
295 COG3947 Response regulator con 91.8 7.4 0.00016 34.7 12.9 61 504-564 281-341 (361)
296 KOG4570 Uncharacterized conser 91.4 1.9 4.2E-05 38.6 9.1 103 362-465 58-166 (418)
297 COG4649 Uncharacterized protei 91.2 7.1 0.00015 31.8 15.2 118 378-496 68-193 (221)
298 PF07721 TPR_4: Tetratricopept 91.1 0.37 8E-06 25.1 2.9 24 537-560 2-25 (26)
299 PF00637 Clathrin: Region in C 91.0 0.047 1E-06 44.0 -0.9 85 32-120 12-96 (143)
300 PF13174 TPR_6: Tetratricopept 91.0 0.38 8.1E-06 26.6 3.2 31 505-535 3-33 (33)
301 PF13170 DUF4003: Protein of u 90.9 13 0.00028 34.2 17.1 62 416-478 160-225 (297)
302 PF13181 TPR_8: Tetratricopept 90.9 0.63 1.4E-05 26.0 4.1 29 537-565 2-30 (34)
303 PF07035 Mic1: Colon cancer-as 90.7 8.2 0.00018 31.6 15.7 41 296-340 27-67 (167)
304 PF13374 TPR_10: Tetratricopep 90.7 0.53 1.2E-05 27.8 3.9 28 537-564 3-30 (42)
305 PF08631 SPO22: Meiosis protei 90.6 13 0.00029 33.9 25.6 157 401-562 86-272 (278)
306 KOG1585 Protein required for f 90.6 11 0.00024 32.8 13.5 61 504-564 152-218 (308)
307 KOG1258 mRNA processing protei 90.5 20 0.00043 35.7 26.4 120 435-556 298-420 (577)
308 PRK15180 Vi polysaccharide bio 90.5 17 0.00037 34.9 27.0 127 136-265 296-425 (831)
309 COG4785 NlpI Lipoprotein NlpI, 90.4 10 0.00022 32.3 13.6 26 538-563 239-264 (297)
310 PRK09687 putative lyase; Provi 90.4 14 0.0003 33.8 27.5 121 433-564 141-262 (280)
311 KOG4648 Uncharacterized conser 90.4 0.91 2E-05 41.0 6.4 100 440-542 103-205 (536)
312 COG4785 NlpI Lipoprotein NlpI, 90.3 10 0.00023 32.2 15.1 164 368-537 99-272 (297)
313 TIGR03504 FimV_Cterm FimV C-te 90.0 0.63 1.4E-05 28.0 3.6 27 540-566 3-29 (44)
314 PRK15180 Vi polysaccharide bio 90.0 6.6 0.00014 37.6 11.8 123 409-535 299-424 (831)
315 TIGR02561 HrpB1_HrpK type III 90.0 3.9 8.5E-05 32.4 8.8 93 434-532 7-107 (153)
316 COG4455 ImpE Protein of avirul 89.9 1.5 3.2E-05 37.1 6.7 73 472-544 3-80 (273)
317 KOG4234 TPR repeat-containing 89.5 11 0.00023 31.7 11.2 92 407-502 103-201 (271)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 2.6 5.7E-05 30.3 6.7 62 415-478 23-84 (103)
319 COG3629 DnrI DNA-binding trans 89.4 4.3 9.3E-05 36.4 9.8 77 300-377 155-236 (280)
320 PF13431 TPR_17: Tetratricopep 89.2 0.54 1.2E-05 26.5 2.8 31 153-185 3-33 (34)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 3.3 7.2E-05 29.8 7.1 47 497-543 37-83 (103)
322 PF02284 COX5A: Cytochrome c o 89.0 2.4 5.1E-05 30.9 6.3 60 417-478 28-87 (108)
323 PF02284 COX5A: Cytochrome c o 88.8 3.7 8E-05 30.0 7.2 48 497-544 40-87 (108)
324 PF06552 TOM20_plant: Plant sp 88.7 1.3 2.8E-05 36.3 5.6 31 519-549 52-82 (186)
325 PF11207 DUF2989: Protein of u 88.7 13 0.00028 31.5 11.4 75 480-556 117-198 (203)
326 PRK11619 lytic murein transgly 88.3 35 0.00076 35.5 39.1 233 311-556 254-496 (644)
327 PRK10941 hypothetical protein; 88.2 3.6 7.9E-05 37.0 8.7 63 504-566 183-245 (269)
328 COG4105 ComL DNA uptake lipopr 87.5 19 0.00042 31.7 19.5 73 307-379 43-117 (254)
329 PF14561 TPR_20: Tetratricopep 87.1 2.8 6E-05 30.3 6.0 52 501-552 21-74 (90)
330 KOG0276 Vesicle coat complex C 86.8 19 0.0004 35.9 12.8 44 446-496 649-692 (794)
331 PF10602 RPN7: 26S proteasome 86.7 8.7 0.00019 32.1 9.7 63 299-361 37-101 (177)
332 KOG4570 Uncharacterized conser 86.6 2 4.2E-05 38.5 5.9 102 57-159 58-165 (418)
333 PF14853 Fis1_TPR_C: Fis1 C-te 86.0 2 4.4E-05 27.2 4.2 34 507-540 6-39 (53)
334 smart00028 TPR Tetratricopepti 85.8 1.9 4.1E-05 23.0 4.0 27 538-564 3-29 (34)
335 KOG4642 Chaperone-dependent E3 85.7 3.2 7E-05 35.7 6.4 56 507-562 49-104 (284)
336 PF13374 TPR_10: Tetratricopep 85.5 2.1 4.6E-05 25.1 4.2 29 503-531 3-31 (42)
337 KOG0276 Vesicle coat complex C 85.1 11 0.00024 37.4 10.4 118 76-220 599-716 (794)
338 PF04097 Nic96: Nup93/Nic96; 84.7 53 0.0012 34.1 23.4 65 93-158 110-181 (613)
339 PF00637 Clathrin: Region in C 84.7 0.72 1.6E-05 37.1 2.3 53 340-392 14-66 (143)
340 TIGR02508 type_III_yscG type I 84.4 14 0.0003 27.0 8.5 84 45-132 22-105 (115)
341 PF04097 Nic96: Nup93/Nic96; 84.2 56 0.0012 33.9 22.9 47 196-244 112-158 (613)
342 smart00028 TPR Tetratricopepti 84.2 2.2 4.8E-05 22.7 3.7 31 503-533 2-32 (34)
343 PF13762 MNE1: Mitochondrial s 84.1 20 0.00042 28.6 10.3 91 54-144 28-130 (145)
344 PF11207 DUF2989: Protein of u 83.8 25 0.00054 29.8 10.7 79 308-388 117-198 (203)
345 KOG1550 Extracellular protein 83.5 56 0.0012 33.5 20.5 249 308-566 259-539 (552)
346 TIGR02508 type_III_yscG type I 83.4 15 0.00033 26.8 8.8 87 144-235 20-106 (115)
347 KOG3364 Membrane protein invol 83.1 7.2 0.00016 30.3 6.7 72 467-538 29-107 (149)
348 KOG4648 Uncharacterized conser 81.6 6.5 0.00014 35.8 7.0 78 405-493 103-181 (536)
349 KOG1586 Protein required for f 80.9 37 0.0008 29.5 16.8 25 513-537 165-189 (288)
350 smart00386 HAT HAT (Half-A-TPR 80.9 4.4 9.6E-05 21.9 4.1 30 516-545 1-30 (33)
351 PF04190 DUF410: Protein of un 79.4 48 0.001 29.9 15.6 143 102-260 18-170 (260)
352 PF10579 Rapsyn_N: Rapsyn N-te 79.0 5 0.00011 27.7 4.2 46 446-491 18-64 (80)
353 PF08311 Mad3_BUB1_I: Mad3/BUB 78.9 23 0.00049 27.6 8.6 42 520-561 81-124 (126)
354 PF13929 mRNA_stabil: mRNA sta 78.8 51 0.0011 29.8 15.5 52 365-416 199-255 (292)
355 KOG1464 COP9 signalosome, subu 78.7 47 0.001 29.5 17.0 232 301-538 68-339 (440)
356 PF09477 Type_III_YscG: Bacter 78.7 24 0.00053 26.2 7.9 81 142-226 19-99 (116)
357 PF10345 Cohesin_load: Cohesin 78.6 89 0.0019 32.6 36.5 51 208-258 191-252 (608)
358 PF09986 DUF2225: Uncharacteri 78.6 21 0.00046 31.0 9.1 66 504-569 120-198 (214)
359 KOG0545 Aryl-hydrocarbon recep 78.2 18 0.0004 31.5 8.2 56 510-565 238-293 (329)
360 COG5159 RPN6 26S proteasome re 78.1 51 0.0011 29.6 11.8 199 304-530 9-234 (421)
361 KOG1308 Hsp70-interacting prot 78.1 1.6 3.4E-05 39.7 2.2 85 446-532 126-212 (377)
362 PF09670 Cas_Cas02710: CRISPR- 76.5 56 0.0012 31.4 12.3 53 409-462 141-197 (379)
363 KOG1586 Protein required for f 75.9 53 0.0012 28.6 16.2 19 516-534 209-227 (288)
364 KOG4077 Cytochrome c oxidase, 75.8 19 0.00042 27.5 6.9 47 497-543 79-125 (149)
365 PF10579 Rapsyn_N: Rapsyn N-te 75.8 8.7 0.00019 26.6 4.7 45 514-558 18-65 (80)
366 PHA02875 ankyrin repeat protei 75.5 85 0.0018 30.7 16.4 192 19-230 22-229 (413)
367 KOG0403 Neoplastic transformat 75.0 83 0.0018 30.4 16.9 25 169-193 218-242 (645)
368 TIGR03504 FimV_Cterm FimV C-te 74.9 6 0.00013 23.9 3.4 24 100-123 5-28 (44)
369 PF12862 Apc5: Anaphase-promot 74.6 18 0.00039 26.4 6.7 51 514-564 10-69 (94)
370 PF06552 TOM20_plant: Plant sp 74.5 49 0.0011 27.5 10.3 43 518-567 96-138 (186)
371 KOG0403 Neoplastic transformat 74.2 87 0.0019 30.2 13.4 25 97-121 217-241 (645)
372 COG1747 Uncharacterized N-term 74.1 95 0.0021 30.6 23.0 93 297-394 65-157 (711)
373 cd08819 CARD_MDA5_2 Caspase ac 73.3 18 0.00038 25.7 5.8 66 47-114 21-86 (88)
374 KOG2066 Vacuolar assembly/sort 73.2 1.2E+02 0.0027 31.6 24.8 76 63-141 392-467 (846)
375 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 8.4 0.00018 24.4 3.9 31 538-568 3-33 (53)
376 KOG4507 Uncharacterized conser 72.6 26 0.00057 34.8 8.7 84 483-566 620-706 (886)
377 PRK13800 putative oxidoreducta 72.2 1.6E+02 0.0035 32.5 26.4 254 289-564 626-880 (897)
378 KOG4507 Uncharacterized conser 70.9 16 0.00035 36.1 7.0 101 446-547 619-721 (886)
379 KOG1498 26S proteasome regulat 70.9 97 0.0021 29.4 14.3 97 474-570 135-246 (439)
380 PF11838 ERAP1_C: ERAP1-like C 70.3 95 0.0021 29.0 16.6 81 451-531 147-230 (324)
381 COG1747 Uncharacterized N-term 70.1 1.2E+02 0.0026 30.0 22.6 171 367-544 65-247 (711)
382 COG4976 Predicted methyltransf 70.0 9 0.0002 32.9 4.5 58 480-537 5-64 (287)
383 PF09477 Type_III_YscG: Bacter 69.6 38 0.00083 25.2 7.0 80 41-124 20-99 (116)
384 COG4455 ImpE Protein of avirul 69.2 75 0.0016 27.4 11.2 56 402-459 4-60 (273)
385 PRK12798 chemotaxis protein; R 68.9 1.1E+02 0.0025 29.4 22.2 182 381-566 125-325 (421)
386 KOG4077 Cytochrome c oxidase, 68.7 38 0.00082 26.1 7.0 69 418-497 68-136 (149)
387 PF10366 Vps39_1: Vacuolar sor 67.9 24 0.00051 26.6 6.1 40 485-530 28-67 (108)
388 PF13934 ELYS: Nuclear pore co 67.9 85 0.0019 27.6 11.6 20 440-459 114-133 (226)
389 KOG0890 Protein kinase of the 67.9 2.8E+02 0.0061 33.6 27.7 105 435-543 1671-1796(2382)
390 PF10345 Cohesin_load: Cohesin 67.6 1.6E+02 0.0035 30.7 28.3 111 148-259 40-167 (608)
391 cd08819 CARD_MDA5_2 Caspase ac 67.4 42 0.00091 23.9 6.6 38 177-215 48-85 (88)
392 COG2909 MalT ATP-dependent tra 66.8 1.8E+02 0.004 31.0 26.0 216 343-561 425-684 (894)
393 KOG3824 Huntingtin interacting 66.4 18 0.00039 32.6 5.8 47 514-560 128-174 (472)
394 KOG4279 Serine/threonine prote 66.4 1.7E+02 0.0037 30.5 16.4 193 300-544 203-408 (1226)
395 PF13762 MNE1: Mitochondrial s 66.0 67 0.0015 25.7 9.7 79 169-247 43-131 (145)
396 KOG3807 Predicted membrane pro 65.9 92 0.002 28.6 10.1 18 520-537 380-397 (556)
397 PF11846 DUF3366: Domain of un 65.6 27 0.00059 29.7 6.9 35 499-533 141-175 (193)
398 PF14863 Alkyl_sulf_dimr: Alky 65.0 44 0.00095 26.6 7.3 64 486-552 57-120 (141)
399 PF07163 Pex26: Pex26 protein; 64.8 64 0.0014 29.0 8.7 88 100-188 89-181 (309)
400 PHA02875 ankyrin repeat protei 64.5 1.4E+02 0.0031 29.2 12.7 68 50-117 17-88 (413)
401 COG3947 Response regulator con 63.6 1.2E+02 0.0025 27.6 16.0 57 303-360 284-340 (361)
402 smart00777 Mad3_BUB1_I Mad3/BU 63.5 69 0.0015 24.9 8.5 42 520-561 81-124 (125)
403 PF07163 Pex26: Pex26 protein; 61.7 1.1E+02 0.0023 27.7 9.5 87 305-391 90-181 (309)
404 PF11848 DUF3368: Domain of un 61.5 36 0.00077 21.0 5.0 33 105-137 13-45 (48)
405 PRK13342 recombination factor 59.7 1.8E+02 0.0039 28.5 17.1 101 330-448 173-279 (413)
406 PF10366 Vps39_1: Vacuolar sor 59.0 76 0.0016 23.9 7.9 27 300-326 41-67 (108)
407 COG5191 Uncharacterized conser 58.5 10 0.00022 34.2 2.9 82 464-545 101-185 (435)
408 COG2912 Uncharacterized conser 57.3 44 0.00096 29.9 6.6 58 507-564 186-243 (269)
409 PF12862 Apc5: Anaphase-promot 57.2 68 0.0015 23.3 6.8 61 410-470 9-77 (94)
410 PF11846 DUF3366: Domain of un 57.0 50 0.0011 28.1 7.0 57 441-497 115-171 (193)
411 PRK10941 hypothetical protein; 56.7 1.5E+02 0.0033 26.8 10.1 77 402-480 184-261 (269)
412 PRK13342 recombination factor 55.5 2.1E+02 0.0046 28.0 17.6 99 228-345 173-277 (413)
413 COG5191 Uncharacterized conser 55.5 33 0.00071 31.2 5.5 75 433-509 106-183 (435)
414 KOG2297 Predicted translation 55.1 1.7E+02 0.0037 26.8 13.0 17 335-351 323-339 (412)
415 KOG1550 Extracellular protein 54.9 2.6E+02 0.0056 28.8 21.1 153 104-263 259-429 (552)
416 KOG0376 Serine-threonine phosp 54.7 13 0.00029 35.7 3.3 100 441-543 11-113 (476)
417 KOG3364 Membrane protein invol 54.7 1.1E+02 0.0023 24.2 9.8 26 539-564 74-99 (149)
418 KOG2396 HAT (Half-A-TPR) repea 54.5 2.3E+02 0.005 28.1 36.9 242 316-564 300-558 (568)
419 KOG2063 Vacuolar assembly/sort 54.5 3.2E+02 0.0069 29.7 17.5 208 301-548 507-744 (877)
420 PF14689 SPOB_a: Sensor_kinase 53.9 39 0.00083 22.3 4.5 44 416-461 7-50 (62)
421 PF04910 Tcf25: Transcriptiona 53.7 2.1E+02 0.0045 27.4 17.3 56 405-460 109-165 (360)
422 KOG0292 Vesicle coat complex C 53.2 1.5E+02 0.0033 31.5 10.3 161 373-568 625-785 (1202)
423 KOG0551 Hsp90 co-chaperone CNS 52.9 1.4E+02 0.003 27.8 8.9 59 503-561 120-178 (390)
424 PF14689 SPOB_a: Sensor_kinase 52.4 30 0.00064 22.8 3.8 28 537-564 24-51 (62)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 51.3 1.2E+02 0.0025 23.7 9.1 43 417-459 81-124 (126)
426 PF14669 Asp_Glu_race_2: Putat 50.8 1.5E+02 0.0033 25.0 13.4 56 506-561 136-206 (233)
427 COG4976 Predicted methyltransf 50.8 34 0.00073 29.6 4.6 57 443-501 4-61 (287)
428 PF11848 DUF3368: Domain of un 50.5 58 0.0013 20.1 5.1 33 410-442 13-45 (48)
429 KOG4642 Chaperone-dependent E3 50.2 1.8E+02 0.0039 25.7 9.8 41 414-456 25-66 (284)
430 PF10516 SHNi-TPR: SHNi-TPR; 50.1 45 0.00097 19.4 3.8 28 537-564 2-29 (38)
431 PF10255 Paf67: RNA polymerase 49.6 1.1E+02 0.0024 29.6 8.4 56 507-562 127-190 (404)
432 PF07575 Nucleopor_Nup85: Nup8 49.4 3.2E+02 0.0069 28.3 17.0 94 298-395 372-465 (566)
433 PF07575 Nucleopor_Nup85: Nup8 49.2 1.9E+02 0.004 29.9 10.8 63 195-259 404-466 (566)
434 PRK10564 maltose regulon perip 49.0 36 0.00077 31.0 4.8 38 198-235 259-296 (303)
435 PF05476 PET122: PET122; Inte 48.9 87 0.0019 27.6 6.9 79 481-559 21-103 (267)
436 PF07720 TPR_3: Tetratricopept 48.7 51 0.0011 18.8 4.6 18 541-558 6-23 (36)
437 KOG4567 GTPase-activating prot 48.0 1.9E+02 0.0042 26.5 8.9 76 318-398 263-348 (370)
438 COG5108 RPO41 Mitochondrial DN 47.6 2.1E+02 0.0045 29.5 9.9 86 170-258 33-130 (1117)
439 PRK10564 maltose regulon perip 47.4 40 0.00086 30.7 4.9 38 300-337 259-296 (303)
440 PF11817 Foie-gras_1: Foie gra 47.2 74 0.0016 28.4 6.8 21 440-460 184-204 (247)
441 COG0735 Fur Fe2+/Zn2+ uptake r 46.0 93 0.002 25.0 6.5 41 118-159 10-50 (145)
442 KOG2471 TPR repeat-containing 45.8 3.1E+02 0.0068 27.1 14.4 106 444-549 250-382 (696)
443 KOG1464 COP9 signalosome, subu 45.7 2.3E+02 0.0049 25.5 14.7 187 310-496 39-258 (440)
444 KOG0530 Protein farnesyltransf 45.1 2.3E+02 0.005 25.4 12.6 70 501-570 111-181 (318)
445 cd00280 TRFH Telomeric Repeat 44.8 84 0.0018 26.2 5.9 26 511-537 120-145 (200)
446 KOG4567 GTPase-activating prot 44.6 2.6E+02 0.0056 25.8 9.8 57 216-277 263-319 (370)
447 KOG4814 Uncharacterized conser 44.5 1.6E+02 0.0036 30.0 8.8 60 505-564 397-456 (872)
448 PF12926 MOZART2: Mitotic-spin 44.5 61 0.0013 23.0 4.4 43 48-90 28-70 (88)
449 PF11663 Toxin_YhaV: Toxin wit 44.3 29 0.00064 27.0 3.1 31 310-342 107-137 (140)
450 KOG2034 Vacuolar sorting prote 43.6 4.5E+02 0.0097 28.3 28.8 52 172-223 365-416 (911)
451 KOG3807 Predicted membrane pro 43.4 2.2E+02 0.0047 26.4 8.7 20 342-361 284-303 (556)
452 COG0735 Fur Fe2+/Zn2+ uptake r 43.1 1.5E+02 0.0032 23.8 7.2 60 220-280 10-69 (145)
453 PF13934 ELYS: Nuclear pore co 43.0 2.3E+02 0.0051 24.9 13.0 44 381-425 91-134 (226)
454 cd00280 TRFH Telomeric Repeat 42.9 1.6E+02 0.0034 24.8 7.1 17 443-459 120-136 (200)
455 COG4259 Uncharacterized protei 42.7 97 0.0021 22.7 5.2 38 506-543 76-113 (121)
456 PRK11639 zinc uptake transcrip 42.7 86 0.0019 26.0 6.0 16 144-159 40-55 (169)
457 COG2909 MalT ATP-dependent tra 40.7 5E+02 0.011 28.0 29.6 216 176-395 426-686 (894)
458 PF04090 RNA_pol_I_TF: RNA pol 40.3 2.4E+02 0.0051 24.2 10.3 34 400-434 42-75 (199)
459 KOG2659 LisH motif-containing 40.2 2.6E+02 0.0055 24.5 8.5 93 402-495 29-128 (228)
460 KOG2422 Uncharacterized conser 40.1 4.2E+02 0.0091 27.0 16.8 55 406-460 349-404 (665)
461 PRK11639 zinc uptake transcrip 40.0 1.4E+02 0.003 24.8 6.8 35 246-280 40-74 (169)
462 PRK09857 putative transposase; 40.0 1.8E+02 0.0039 26.8 8.1 63 507-569 211-273 (292)
463 KOG1114 Tripeptidyl peptidase 39.7 5.4E+02 0.012 28.1 15.7 119 351-486 1165-1283(1304)
464 KOG2297 Predicted translation 39.6 3.1E+02 0.0067 25.3 12.7 18 472-489 323-340 (412)
465 PF11817 Foie-gras_1: Foie gra 38.8 1.5E+02 0.0032 26.6 7.3 55 507-561 183-243 (247)
466 cd08326 CARD_CASP9 Caspase act 38.7 78 0.0017 22.5 4.4 59 48-110 19-77 (84)
467 cd07153 Fur_like Ferric uptake 38.6 91 0.002 23.7 5.3 46 99-144 5-50 (116)
468 smart00638 LPD_N Lipoprotein N 38.3 4.7E+02 0.01 27.1 23.6 63 61-125 308-371 (574)
469 PF11123 DNA_Packaging_2: DNA 38.1 1.2E+02 0.0027 20.6 4.8 16 550-565 59-74 (82)
470 KOG0686 COP9 signalosome, subu 38.0 3.8E+02 0.0082 25.9 13.3 21 374-394 156-176 (466)
471 KOG2396 HAT (Half-A-TPR) repea 37.7 4.3E+02 0.0093 26.4 31.8 63 26-90 104-167 (568)
472 PRK14956 DNA polymerase III su 37.4 3.9E+02 0.0085 26.8 10.3 107 8-135 183-289 (484)
473 COG0790 FOG: TPR repeat, SEL1 37.4 3.3E+02 0.0071 25.0 20.0 48 517-567 206-268 (292)
474 COG4259 Uncharacterized protei 37.0 1.7E+02 0.0037 21.5 6.3 24 473-496 75-98 (121)
475 smart00638 LPD_N Lipoprotein N 36.9 5E+02 0.011 26.9 23.6 58 268-328 312-370 (574)
476 PF14561 TPR_20: Tetratricopep 36.8 1.6E+02 0.0035 21.2 8.0 42 524-565 10-51 (90)
477 KOG0686 COP9 signalosome, subu 36.8 4E+02 0.0086 25.8 14.6 62 300-361 152-215 (466)
478 cd08326 CARD_CASP9 Caspase act 36.4 1.1E+02 0.0024 21.8 4.8 36 178-213 43-78 (84)
479 PF04910 Tcf25: Transcriptiona 36.1 4E+02 0.0086 25.6 14.3 120 433-564 39-167 (360)
480 KOG0376 Serine-threonine phosp 36.0 52 0.0011 32.0 4.1 90 477-566 11-102 (476)
481 KOG2471 TPR repeat-containing 35.7 4.6E+02 0.0099 26.1 14.9 62 508-572 212-273 (696)
482 PF08195 TRI9: TRI9 protein; 35.5 10 0.00022 21.2 -0.3 13 566-578 10-22 (43)
483 PF06957 COPI_C: Coatomer (COP 35.1 1.4E+02 0.003 29.1 6.7 46 491-536 287-334 (422)
484 PF13929 mRNA_stabil: mRNA sta 35.0 3.6E+02 0.0078 24.7 18.2 67 430-496 198-264 (292)
485 PF10255 Paf67: RNA polymerase 34.4 2.1E+02 0.0046 27.7 7.8 91 403-497 79-191 (404)
486 TIGR02270 conserved hypothetic 34.3 4.6E+02 0.0099 25.7 24.3 238 238-500 45-282 (410)
487 KOG1839 Uncharacterized protei 34.0 2.5E+02 0.0053 31.6 8.9 122 442-564 940-1085(1236)
488 PRK08691 DNA polymerase III su 33.7 6.1E+02 0.013 27.0 11.3 46 415-462 180-226 (709)
489 PF03745 DUF309: Domain of unk 33.7 1.1E+02 0.0025 20.1 4.3 34 104-137 9-42 (62)
490 PF12968 DUF3856: Domain of Un 33.7 1.2E+02 0.0026 23.3 4.7 20 538-557 57-76 (144)
491 cd07153 Fur_like Ferric uptake 33.6 1.3E+02 0.0028 22.8 5.4 47 201-247 5-51 (116)
492 KOG0687 26S proteasome regulat 33.4 4E+02 0.0088 24.8 12.9 96 435-532 105-211 (393)
493 PRK07003 DNA polymerase III su 33.1 6.5E+02 0.014 27.1 11.4 46 415-462 180-226 (830)
494 PF12968 DUF3856: Domain of Un 32.8 2.3E+02 0.005 21.9 11.1 95 446-562 21-126 (144)
495 KOG3636 Uncharacterized conser 32.6 4.3E+02 0.0092 25.7 9.1 85 325-410 175-271 (669)
496 PF04190 DUF410: Protein of un 32.5 3.8E+02 0.0082 24.2 18.4 106 177-294 2-117 (260)
497 PF01475 FUR: Ferric uptake re 32.4 91 0.002 23.9 4.4 46 98-143 11-56 (120)
498 PF11838 ERAP1_C: ERAP1-like C 32.3 4.2E+02 0.0091 24.7 12.6 29 129-157 201-229 (324)
499 PF09454 Vps23_core: Vps23 cor 32.3 92 0.002 20.8 3.7 33 127-159 6-38 (65)
500 PHA02537 M terminase endonucle 32.3 2.1E+02 0.0045 25.2 6.8 34 503-536 170-212 (230)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-88 Score=711.02 Aligned_cols=572 Identities=34% Similarity=0.626 Sum_probs=563.1
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchH
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (580)
++.|++++|+.+| +.|...|+.||..+|+.++++|+..+++ ..+.+++..+.+.|+.||..++|.|+.+|++.|++++
T Consensus 163 ~~~g~~~~A~~~f-~~M~~~g~~Pd~~t~~~ll~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 163 AKAGYFDEALCLY-HRMLWAGVRPDVYTFPCVLRTCGGIPDL-ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HhCCCHHHHHHHH-HHHHHcCCCCChhHHHHHHHHhCCccch-hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 5789999999999 9999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC
Q 041384 82 AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161 (580)
Q Consensus 82 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (580)
|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.| +
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~ 319 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-F 319 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 241 (580)
.||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 041384 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321 (580)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (580)
++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|+ ++.|.++|+.+..+|..+|+++|.+|++.|+.++|+.+|
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcch
Q 041384 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401 (580)
Q Consensus 322 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 401 (580)
++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 99985 5899999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (580)
||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997767999999999999999999
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++.++.|+++..|..+++.|...|+|++|.++.+.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCCceeEEEeC
Q 041384 562 MRAKGLSKSYGFSRIENE 579 (580)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~ 579 (580)
|++.|++++||+|||+++
T Consensus 717 M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 717 MRENGLTVDPGCSWVEVK 734 (857)
T ss_pred HHHcCCCCCCCccEEEEC
Confidence 999999999999999985
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-81 Score=655.27 Aligned_cols=562 Identities=27% Similarity=0.495 Sum_probs=546.7
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchH
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (580)
++.|++++|+.+| +.|...|+.|+..+|..++++|.+.+.. ..+.+++..+.+.|..++...+|.++..|++.|+.+.
T Consensus 62 ~~~g~~~~A~~l~-~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 62 CSHGQLEQALKLL-ESMQELRVPVDEDAYVALFRLCEWKRAV-EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred HhCCCHHHHHHHH-HHHHhcCCCCChhHHHHHHHHHhhCCCH-HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH
Confidence 5789999999999 9999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC
Q 041384 82 AYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF 161 (580)
Q Consensus 82 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (580)
|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.| +
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~ 218 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-F 218 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 241 (580)
.||..+++.|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 041384 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321 (580)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (580)
++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|+ ++.|.++|+.+..+|..+||++|.+|++.|++++|+++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS-WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC-HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcch
Q 041384 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401 (580)
Q Consensus 322 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 401 (580)
++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.++|..+
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs 457 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (580)
|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+++ .|+.++..+++.|+++|+
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHH
Confidence 99999999999999999999999986 5999999999999999999999999999999665 899999999999999999
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
++|++++|.++|+++ .||..+|++++.+|++.|+.++|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+
T Consensus 536 k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 536 RCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999876 5678889999999999999999999999
Q ss_pred HHH-hCCCccCC
Q 041384 561 VMR-AKGLSKSY 571 (580)
Q Consensus 561 ~~~-~~~~~~~~ 571 (580)
+|. +.|+.|+.
T Consensus 614 ~M~~~~gi~P~~ 625 (857)
T PLN03077 614 SMEEKYSITPNL 625 (857)
T ss_pred HHHHHhCCCCch
Confidence 998 56887754
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-75 Score=595.74 Aligned_cols=487 Identities=30% Similarity=0.546 Sum_probs=477.8
Q ss_pred CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHh
Q 041384 91 YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG-FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST 169 (580)
Q Consensus 91 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 169 (580)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..+.+.| +.||..+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 4467799999999999999999999999998864 78999999999999999999999999999999999 999999999
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchh
Q 041384 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249 (580)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (580)
.|+++|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329 (580)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 329 (580)
+.+++..+.+.|+.++..+++.++.+|++.|+ ++.|.++|+.+..+|+.+||++|.+|++.|++++|+.+|++|.+.|+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCC-HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHH
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGY 409 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 409 (580)
.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+||.||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHH
Q 041384 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (580)
++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999877789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 490 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
.+++++++..|+..+|++|+.+|+.+|+++.|..+++++.+..|++...|..++++|.+.|++++|.+++++|.+.|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeC
Q 041384 570 SYGFSRIENE 579 (580)
Q Consensus 570 ~~~~~~~~~~ 579 (580)
.||++|++++
T Consensus 562 ~~g~s~i~~~ 571 (697)
T PLN03081 562 HPACTWIEVK 571 (697)
T ss_pred CCCeeEEEEC
Confidence 9999999974
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-68 Score=550.29 Aligned_cols=512 Identities=16% Similarity=0.201 Sum_probs=389.5
Q ss_pred CCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHH
Q 041384 24 YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIIN 102 (580)
Q Consensus 24 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 102 (580)
.++...|..++..|.+.|++ ..|.++|++|.+.| ++++..+++.++.+|.+.|..++|.++|+.|+.||..+|+.+|.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l-~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRI-KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677899999999999999 99999999999998 46788888999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHH
Q 041384 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWL 182 (580)
Q Consensus 103 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (580)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.| +.||..+|+.||.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHhcC----CCCCeehHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 041384 183 IALRVFEQM----VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQR--EGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256 (580)
Q Consensus 183 ~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (580)
+|.++|++| ..||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998 457899999999999999999999999999976 57899999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 041384 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336 (580)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 336 (580)
|.+.|+.|+..+|+.++.+|++ .|++++|..+|++|.+.|+.||..||
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k--------------------------------~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQ--------------------------------KGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHh--------------------------------cCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9998888766555555555554 45555555555555555555555555
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCC----CCCcchHHHHHHHHHhc
Q 041384 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA----ARDFVSWTTLISGYGFH 412 (580)
Q Consensus 337 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~ 412 (580)
+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 55555555555555555555555555555555555555555555555555555555553 24555555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh-----------
Q 041384 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG----------- 481 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 481 (580)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++.+|. +.|+.||..+|+.++..+.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555555555555555555555555555555555555555533 2455555555555543321
Q ss_pred ------------hcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCchHHHHHHHH
Q 041384 482 ------------KSGKIEDACKVVSTM---PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA-EPENAANYTLLSMV 545 (580)
Q Consensus 482 ------------~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 545 (580)
..+..++|..+|++| ++.||..+|+.++..++..++...+..+++.+... .+++..+|+.++++
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 112346788999988 47899999999997777888888888888877644 36778889999988
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCCc
Q 041384 546 CSESGNWLGAEEVWRVMRAKGLSKSYG 572 (580)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (580)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7322 368999999999999886553
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-67 Score=541.04 Aligned_cols=461 Identities=24% Similarity=0.392 Sum_probs=444.6
Q ss_pred CCCCchhhHHHHHHHHHccC-CCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCch
Q 041384 2 VSKHFYEQTLHLYKQELHPS-GLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (580)
++.|++++|+++| +.|... ++.||..+|+.++.+|.+.++. +.+.+++..|.+.|+.||..+||.|+..|++.|+++
T Consensus 98 ~~~g~~~~Al~~f-~~m~~~~~~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 98 VACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HcCCCHHHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 5679999999999 889775 4789999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC
Q 041384 81 SAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGS 160 (580)
Q Consensus 81 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 160 (580)
.|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.+++..+.+.|
T Consensus 176 ~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g- 254 (697)
T PLN03081 176 DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG- 254 (697)
T ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041384 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLA 240 (580)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 240 (580)
+.+|..+++.|+++|+++|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHH
Q 041384 241 CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKL 320 (580)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 320 (580)
|++.|+++.|.+++..|.+.|+.|+..+++.++.+|+++|+ ++.|.++|+.+..+|..+||+||.+|++.|+.++|+++
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC-HHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC-CC
Q 041384 321 FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-RD 398 (580)
Q Consensus 321 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 398 (580)
|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++.. |+
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~ 493 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT 493 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999986 69999999999999999999999999999999864 79
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..+++.|++.|++++|.++++. |++.|+.+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~-m~~~g~~k~ 562 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVET-LKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHH-HHHcCCccC
Confidence 99999999999999999999999999975 466 467999999999999999999999999 555777543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-66 Score=535.99 Aligned_cols=489 Identities=16% Similarity=0.201 Sum_probs=381.5
Q ss_pred CCCCchhhHHHHHHHHHccCCC-CCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCch
Q 041384 2 VSKHFYEQTLHLYKQELHPSGL-YSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (580)
.+.|++++|+++| +.|...|+ .++...+..++..|.+.+.. ..|..+++.|.. ||..+|+.+|.+|++.|+++
T Consensus 381 ~r~G~l~eAl~Lf-d~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 381 LRDGRIKDCIDLL-EDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIRN----PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHCcCHHHHHHHH-HHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHH
Confidence 4679999999999 99999886 46777788899999999999 999999998863 99999999999999999999
Q ss_pred HHHHhhccCC----CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 041384 81 SAYQLFDEMP----YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156 (580)
Q Consensus 81 ~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 156 (580)
+|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999996 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCC------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041384 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV------IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230 (580)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 230 (580)
+.| +.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+
T Consensus 535 ~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 535 SKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 999 99999999999999999999999999999993 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC----CCChhhHHHHHH
Q 041384 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK----VKDVVIWSSIIR 306 (580)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~ 306 (580)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+ ++.|.++++.+. .|+..+|+++|.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999988776666666555555555 444444444332 334444555555
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 041384 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITS 386 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 386 (580)
+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~-------------- 758 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS-------------- 758 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Confidence 555555555555555555444444555555555555555555555555555554444445544444
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--------------------
Q 041384 387 SHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-------------------- 446 (580)
Q Consensus 387 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-------------------- 446 (580)
.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+
T Consensus 759 -----------------sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 759 -----------------ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred -----------------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 4444555555555555555555555555555555544433221
Q ss_pred ---cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 041384 447 ---AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 447 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
.+..+.|..+|++|. +.|+.||..+|+.++.++++.+..+.+..+++++. ..|+..+|++++.++.+. .++
T Consensus 822 ~~~n~w~~~Al~lf~eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~ 898 (1060)
T PLN03218 822 QIENKWTSWALMVYRETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPR 898 (1060)
T ss_pred ccccchHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHH
Confidence 122456888888855 47888888888888888888888888888888774 446777888888887432 357
Q ss_pred HHHHHHHHHhcC
Q 041384 521 AEMLAHQLIEAE 532 (580)
Q Consensus 521 A~~~~~~~~~~~ 532 (580)
|..++++|...+
T Consensus 899 A~~l~~em~~~G 910 (1060)
T PLN03218 899 AFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHHHcC
Confidence 888888888876
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-34 Score=308.76 Aligned_cols=548 Identities=12% Similarity=0.024 Sum_probs=339.5
Q ss_pred CCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHH
Q 041384 3 SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82 (580)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 82 (580)
+.|++++|...| +.+.... +.+...+..+...+...|+. +.|...++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 307 ~~g~~~~A~~~~-~~~~~~~-p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 307 QLGNLEQAYQYL-NQILKYA-PNSHQARRLLASIQLRLGRV-DEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HcCCHHHHHHHH-HHHHHhC-CCChHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 467888888888 6655432 22344556666677778888 88888888777654 45667777778888888888888
Q ss_pred HHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 041384 83 YQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 83 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
.+.|+++. +.+...+..+...+...|++++|++.++.+.+.... .......++..+.+.|+++.|..+++.+....
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 88887764 234556666677777777777777777777665322 23344455566667777777777777766653
Q ss_pred CCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041384 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI---RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236 (580)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (580)
+++..++..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.+ +.+..++..
T Consensus 462 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 462 --PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred --CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 55566677777777777777777777766522 234455566666666777777777777766542 234555666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 041384 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK---VKDVVIWSSIIRGYSQSGD 313 (580)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 313 (580)
+...+.+.|+.++|...++.+.+.+. .+...+..+...+...|+ .+.+..+++.+. ..+...|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQ-LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 66666666777777776666655542 234455556666666666 666666666543 2344566666666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhc
Q 041384 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 314 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
+++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665543 3344555566666666666666666666666543 33455566666666666666666666666
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh
Q 041384 394 MAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470 (580)
Q Consensus 394 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (580)
+.+ .+...+..+...+...|++++|...++++... .|+..++..+..++...|++++|.+.++++++ ..+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH
Confidence 554 23345555556666666666666666666653 34445555556666666666666666666443 233345
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
..+..++..|...|++++|...|+++. .++++..++.++..+...|+ ++|+..++++.+..|.++..+..++.++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 555566666666666666666666552 23345555566666666665 556666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 041384 549 SGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~ 567 (580)
.|++++|.++++++.+.+.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAP 868 (899)
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 6666666666666655443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-33 Score=305.51 Aligned_cols=545 Identities=12% Similarity=0.006 Sum_probs=362.7
Q ss_pred CCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHH
Q 041384 3 SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82 (580)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 82 (580)
+.|++++|+..+ +.+.... +.+...+..+...+...|+. +.|..+++.+.+.. +.+...+..+...+...|++++|
T Consensus 341 ~~g~~~~A~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 341 RLGRVDEAIATL-SPALGLD-PDDPAALSLLGEAYLALGDF-EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HCCCHHHHHHHH-HHHHhcC-CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHH
Confidence 456777777777 5554432 23444566666666677777 77777777776653 34555666666677777777777
Q ss_pred HHhhccCCC---CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 041384 83 YQLFDEMPY---RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
.+.|+.+.. .+...+..++..+.+.|++++|+.+++.+... .++++.++..+...+...|+++.|.+.++++.+..
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 777766542 23344555666777777777777777777654 33456667777777777777777777777776654
Q ss_pred CCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 041384 160 SFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI---RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI 236 (580)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (580)
+.+...+..+...+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...++++.+.+ +.+...+..
T Consensus 496 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 --PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 45555666677777777777777777776632 245566667777777777777777777776543 234455666
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCC
Q 041384 237 VLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK---VKDVVIWSSIIRGYSQSGD 313 (580)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 313 (580)
+...+...|++++|..+++.+.+.. +.+...+..+...+...|+ .+.|...++.+. +.+...+..+...+...|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD-LNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 6677777777777777777766543 3355666777777777777 777777766543 2345566667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhc
Q 041384 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 314 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
+++|...++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777776543 3345666677777777777777777777776654 44555666667777777777777777776
Q ss_pred CCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChh
Q 041384 394 MAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE 471 (580)
Q Consensus 394 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 471 (580)
+.. |+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++++ ..+++..
T Consensus 729 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~ 805 (899)
T TIGR02917 729 ALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAV 805 (899)
T ss_pred HHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHH
Confidence 654 344556666777777777777777777776652 33556666677777777777777777777554 2344566
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
+++.++..+...|+ .+|+.+++++ ...| ++.++..+...+...|++++|...++++.+.+|.++.++..++.++.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 67777777777777 6677777766 2233 4455666677777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHH
Q 041384 550 GNWLGAEEVWRVMR 563 (580)
Q Consensus 550 g~~~~A~~~~~~~~ 563 (580)
|++++|.+++++|+
T Consensus 885 g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 GRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHh
Confidence 77777777777764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.7e-25 Score=238.64 Aligned_cols=543 Identities=10% Similarity=0.022 Sum_probs=400.1
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcchHHHHHH-hhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCch
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKA-CAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPE 80 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (580)
.+.|++++|++.| +.+...+ +|+...-...... ....++. +.|...++.+.+.. |.+...+..+...+...|+.+
T Consensus 123 ~~~g~~~eA~~~~-~~~l~~~-p~~~~la~~y~~~~~~~~g~~-~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 123 ATTGRTEEALASY-DKLFNGA-PPELDLAVEYWRLVAKLPAQR-PEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HhCCCHHHHHHHH-HHHccCC-CCChHHHHHHHHHHhhCCccH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 3579999999999 7776543 2332211112222 2345788 99999999999885 567778889999999999999
Q ss_pred HHHHhhccCCCCCcc------c-----------------hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041384 81 SAYQLFDEMPYRDTI------S-----------------WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137 (580)
Q Consensus 81 ~A~~~~~~~~~~~~~------~-----------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 137 (580)
+|+..|+++...... . +...+..+-.......|...+.........|+... ...-.
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHH
Confidence 999999987522110 1 11111111122223445555555544322232221 12245
Q ss_pred HhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--CCe---ehHH------------
Q 041384 138 LCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNE---VSWT------------ 200 (580)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~------------ 200 (580)
.+...|++++|...+++.++.. |.+..++..|...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5677899999999999999976 66888999999999999999999999998743 321 1121
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 041384 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280 (580)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (580)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+..+...+. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12346778999999999999998863 234566777888999999999999999999987543 3445555666554 34
Q ss_pred CCHHHHHHHHhhCCCCC------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 041384 281 EALHPARIIFERTKVKD------------VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348 (580)
Q Consensus 281 ~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 348 (580)
+ .+.|...++...... ...+..+...+...|++++|...|++..+.. +-+...+..+...+...|+
T Consensus 433 ~-~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 S-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred C-HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5 788888777654321 1234556677889999999999999998764 3355677788889999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC----c---------chHHHHHHHHHhcCCh
Q 041384 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD----F---------VSWTTLISGYGFHGYG 415 (580)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~ 415 (580)
+++|...++.+.+.. +.++..+..+...+...++.++|...++.+.... . ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998754 3344455555566778999999999999886521 1 1123456678899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 041384 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVST 495 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (580)
++|..+++. .+++...+..+...+.+.|++++|+..|+++++. .+.+...+..++..|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 2445667778888999999999999999998763 344577888999999999999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 496 MP-MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA------ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 496 ~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.. ..| +...+..+..++...|++++|.++++++....|+++ .++..++..+...|++++|+..+++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 84 444 456677788899999999999999999998776543 4677789999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.7e-24 Score=234.29 Aligned_cols=553 Identities=10% Similarity=0.013 Sum_probs=401.5
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcch-----------------HHHHHHhhcccchhHHHHHHHHHHHHhCCCCChh
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAIL-----------------PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV 64 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~-----------------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 64 (580)
.+.|+.++|.+.+ +++.+.. |+...+ ....+.+...|++ +.|.+.++.+.+.. +|+..
T Consensus 73 l~~g~~~~A~~~l-~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~-~eA~~~~~~~l~~~-p~~~~ 147 (1157)
T PRK11447 73 LRQGDSDGAQKLL-DRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRT-EEALASYDKLFNGA-PPELD 147 (1157)
T ss_pred HhCCCHHHHHHHH-HHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCH-HHHHHHHHHHccCC-CCChH
Confidence 3679999999999 8887663 444332 2223456788999 99999999998764 44432
Q ss_pred H-HHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-------------
Q 041384 65 I-SNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL------------- 127 (580)
Q Consensus 65 ~-~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------- 127 (580)
. ...+.......|+.++|++.|+++. +.+...+..+...+...|+.++|+..++++.+.....
T Consensus 148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 148 LAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 2 1122222334699999999999887 3356678888899999999999999999987642110
Q ss_pred ---CHh---hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--C-Ceeh
Q 041384 128 ---KAE---LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R-NEVS 198 (580)
Q Consensus 128 ---~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 198 (580)
+.. .+...+..+-.......+...+....... ..|+.. ...+...+...|++++|+..|++... | +..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL-ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 000 11111222222222344455554443332 122221 22345677889999999999998733 3 6678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH------------HHHHHHHhcCCCchhHHHHHHHHHHhcCCCc
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKP-TRVTL------------TIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (580)
+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...++++++... .+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 8899999999999999999999988753221 11111 1223456789999999999999998754 34
Q ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--------CCHH
Q 041384 266 HHLSAALMHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE--------PNSV 334 (580)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------p~~~ 334 (580)
...+..+...+...|+ .+.|...|++... .+...+..+...|. .++.++|..+++.+...... ....
T Consensus 385 ~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKD-YAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 5667778889999999 9999999988763 34455666666664 46789999988775432100 0112
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHh
Q 041384 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-DFVSWTTLISGYGF 411 (580)
Q Consensus 335 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 411 (580)
.+..+...+...|++++|.+.+++..+.. +-++..+..+...|.+.|++++|...++++.+ | +...+..+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556677888999999999999999865 33567778889999999999999999998754 3 44455556666778
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh
Q 041384 412 HGYGEEALQLFLEMQESGVEPDAI---------TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482 (580)
Q Consensus 412 ~~~~~~a~~~~~~~~~~g~~p~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (580)
.++.++|+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 899999999998875433233221 123455678889999999998873 34556677889999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 483 SGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
.|++++|+..|++. ...| +...+..++..+...|+.++|+..++++.+..|+++..+..++.++...|++++|.++++
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988 3444 678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCC
Q 041384 561 VMRAKGLSKSY 571 (580)
Q Consensus 561 ~~~~~~~~~~~ 571 (580)
++........|
T Consensus 696 ~al~~~~~~~~ 706 (1157)
T PRK11447 696 RLIPQAKSQPP 706 (1157)
T ss_pred HHhhhCccCCc
Confidence 99876543333
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=7.2e-23 Score=211.51 Aligned_cols=540 Identities=8% Similarity=-0.015 Sum_probs=382.7
Q ss_pred CCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHH
Q 041384 3 SKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESA 82 (580)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 82 (580)
..|++++|+..| +...+.. +-+..++..+.+.+...|+. +.|...++...+.. |-|...+..+ ..+ +++++|
T Consensus 56 ~~Gd~~~A~~~l-~~Al~~d-P~n~~~~~~LA~~yl~~g~~-~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 56 KNNDEATAIREF-EYIHQQV-PDNIPLTLYLAEAYRHFGHD-DRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred hCCCHHHHHHHH-HHHHHhC-CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 359999999999 7666553 22355778888899999999 99999999998874 3444444444 333 889999
Q ss_pred HHhhccCC--CC-CccchHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHhhccCCcHHHHH
Q 041384 83 YQLFDEMP--YR-DTISWNSIINC--------FTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCSQIGELELGRQ 150 (580)
Q Consensus 83 ~~~~~~~~--~~-~~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~ 150 (580)
..+++++. .| +...+..+... |.+. +.|.+.++ .......|++.+.... ...|.+.++++.|..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999986 33 45555555554 5555 55555555 4443344456555555 899999999999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHHHHhHh-cCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-
Q 041384 151 IHALVIVDGSFELSVFVSTALLDLYSK-CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK- 228 (580)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 228 (580)
.+..+.+.+ +.+......|...|.. .++ +++..+++...+.+...+..+...|.+.|+.++|.++++++......
T Consensus 204 lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 204 LYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999997 5666667778788887 467 88988887655568888999999999999999999999987654222
Q ss_pred CCHHHHHHH------------------------------HHHHhcCCCchhHHHHHH-----------------------
Q 041384 229 PTRVTLTIV------------------------------LLACAELRDLRNGKAIHG----------------------- 255 (580)
Q Consensus 229 p~~~~~~~l------------------------------l~~~~~~~~~~~a~~~~~----------------------- 255 (580)
|+..++.-+ +..+.+.++++.+.++..
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 333332222 233344444444433321
Q ss_pred ------HHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhCCC---hhHHHHH
Q 041384 256 ------YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV-K-----DVVIWSSIIRGYSQSGD---LSEAMKL 320 (580)
Q Consensus 256 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~ 320 (580)
.+.+. .+-+......+.-.....|+ .+.|..+++.... + +....+-++..|.+.+. ..++..+
T Consensus 361 ~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 361 ALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQ-SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHccc-HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 00000 01122222223333445677 8999999887654 2 22234466677777665 3333333
Q ss_pred ----------------------HHHHHH-CCC-CC--CHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 041384 321 ----------------------FSRMRL-ERI-EP--NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374 (580)
Q Consensus 321 ----------------------~~~m~~-~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 374 (580)
+..... .+. ++ +...+..+..++.. ++.++|...+....... |+......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 111111 112 23 55667777766665 78888999888777654 454444444
Q ss_pred HHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVK 451 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~ 451 (580)
...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++..+.. |+. ..+..+...+...|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 5555789999999999997765 344556677788899999999999999998863 543 33444444555679999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
+|...++++++ ..|+...+..+..++.+.|+.++|+..+++. ...| +...++.+..++...|++++|+..++++.
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999765 4467788999999999999999999999988 3455 56678888889999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 530 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+..|.++.++..++.++...|++++|...+++..+...
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999887553
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.9e-19 Score=186.36 Aligned_cols=510 Identities=11% Similarity=0.006 Sum_probs=356.5
Q ss_pred cccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCC--CCCccchHHHHHHHHhCCChhHHHHH
Q 041384 39 YAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEM 116 (580)
Q Consensus 39 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 116 (580)
..|++ +.|...|+...+.. |-+..++..|..+|.+.|++++|+..+++.. .|+-..|..++..+ +++++|..+
T Consensus 56 ~~Gd~-~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDE-ATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 44899 99999999999886 5568888999999999999999999999876 34333333333333 899999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHh-----hccCCcHHHHHHHHHHHHhCCCCCchHHHhHH-HHHhHhcCCHHHHHHHHhc
Q 041384 117 FREMYLCGFVLKAELLAGIISLC-----SQIGELELGRQIHALVIVDGSFELSVFVSTAL-LDLYSKCHHWLIALRVFEQ 190 (580)
Q Consensus 117 ~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 190 (580)
++++.+.... +..++..+.... ....+.+.|.+.++ ..... ..|+..+.... ...|.+.|++++|+..+.+
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~-~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFA-ASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhC-CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999986422 344554444440 12233366666665 33332 33345544444 8999999999999999999
Q ss_pred CCCC---CeehHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC-Cc
Q 041384 191 MVIR---NEVSWTAMISGCID-SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD-FD 265 (580)
Q Consensus 191 ~~~~---~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 265 (580)
+.+. +......|...|.. .++ +.+..+++. .++-+......+...+.+.|+.+.|.++++.+...... |.
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9554 33345566677777 366 777777553 34467888889999999999999999999887644222 22
Q ss_pred hhHHH------------------------------HHHHHHHHcCCCHHHHHHHHhhCCC--------------------
Q 041384 266 HHLSA------------------------------ALMHMYCECTEALHPARIIFERTKV-------------------- 295 (580)
Q Consensus 266 ~~~~~------------------------------~l~~~~~~~~~~~~~a~~~~~~~~~-------------------- 295 (580)
...+. .++..+.+.+. .+.++++....+.
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQ-YDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccH-HHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 22111 11333444444 4444444321110
Q ss_pred -----------C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHhhccCC-------------
Q 041384 296 -----------K-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-R-IEPNSVTLLAILSSCTRQSF------------- 348 (580)
Q Consensus 296 -----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~------------- 348 (580)
| +......+--...+.|+.++|..+|+..... + -.++......++..+.+.+.
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 1 2222223334567889999999999998662 1 23344444466666665544
Q ss_pred ------------hHHHHHHHHHHHH-hCC-CC--chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHH--HHHHH
Q 041384 349 ------------LSHGLGVHCYIMK-AGL-NF--DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTL--ISGYG 410 (580)
Q Consensus 349 ------------~~~a~~~~~~~~~-~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~ 410 (580)
...+......... .+. ++ +...+..+..++.. ++.++|...+.+.....+..+..+ ...+.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 2222333333433 222 34 67778888888776 889899997777665333334444 44456
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHH
Q 041384 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDAC 490 (580)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (580)
..|++++|...++++... .|+...+..+...+...|+.++|...++..++. . +.....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999998664 565566667778889999999999999997652 2 223333334444555669999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 491 KVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 491 ~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
..+++. ...|+...+..+...+.+.|+.++|+..++++.+.+|+++..+..++.++...|++++|++.+++..+..+
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988 46788889999999999999999999999999999999999999999999999999999999999988654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.9e-21 Score=175.12 Aligned_cols=443 Identities=15% Similarity=0.097 Sum_probs=328.9
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhH
Q 041384 97 WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176 (580)
Q Consensus 97 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (580)
...|..-.-+.|++.+|++.-...-..+. .+......+-..+.+..+++.....-....+.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHH
Confidence 33455556667777777766555443321 122222223344445555555444444444432 455667777888888
Q ss_pred hcCCHHHHHHHHhcCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcCCCchhHHH
Q 041384 177 KCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI-VLLACAELRDLRNGKA 252 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~ 252 (580)
..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +.......|++.+|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 888888888888776432 556777788888888888888888877665 3565544333 2233444677888887
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDV---VIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329 (580)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 329 (580)
.+.+.++.... -...|+.|...+...|+ +..+...|++..+-|+ ..|-.|-..|...+.+++|...|.+....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcch-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 77777665432 23445666666667777 7777777777665443 45777778888889999999998887655
Q ss_pred CCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHH
Q 041384 330 EPN-SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTL 405 (580)
Q Consensus 330 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 405 (580)
.|+ ...+..+...|..+|.++.|+..+++..+.. +.-+..|+.|..++...|++.+|.+.+.+... ....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 565 4567777778889999999999999988764 33467899999999999999999999998776 345688889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhc
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKS 483 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 483 (580)
...|...|.++.|..+|....+ +.|.- ...+.|...|-.+|++++|+..++++++ +.|+ ...|+.+...|...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999888 56765 6788899999999999999999999764 7777 67899999999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 041384 484 GKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554 (580)
Q Consensus 484 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
|+.+.|+..+.+. .+.|. ...++.|...|...|+..+|+..++.++.++|+.+.++..++.++.--.+|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999887 45564 46788999999999999999999999999999999999999887766555554
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.3e-19 Score=182.72 Aligned_cols=419 Identities=11% Similarity=0.013 Sum_probs=272.9
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhH
Q 041384 97 WNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYS 176 (580)
Q Consensus 97 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (580)
+......+.+.|++++|+..|++..+ +.|++..|..+..++.+.|+++.|.+.+..+++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 33455666777777777777777765 34666677777777777777777777777777664 455666777777777
Q ss_pred hcCCHHHHHHHHhcCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHH
Q 041384 177 KCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAI 253 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 253 (580)
..|++++|+..|...... +......++..+.. ..+........+.. +++...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~- 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA- 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh-
Confidence 777777777666543211 11111111111111 11222222221111 011111111111 110000000000
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCC---hhhHHHHHHH---HHhCCChhHHHHHHHHHHHC
Q 041384 254 HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKD---VVIWSSIIRG---YSQSGDLSEAMKLFSRMRLE 327 (580)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~ 327 (580)
-+......+ ...+..+... ....+++++|...|++..+.
T Consensus 279 -----------------------------------~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 279 -----------------------------------GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred -----------------------------------hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 000000000 0011111111 12346788999999988876
Q ss_pred C-CCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchH
Q 041384 328 R-IEP-NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSW 402 (580)
Q Consensus 328 ~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 402 (580)
+ ..| ....+..+...+...|++++|...++...+.. +-....|..+...+...|++++|...|+++.+ .+...|
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 402 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY 402 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4 234 34567777777888999999999999888753 23456777888888899999999999987765 356788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 041384 403 TTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481 (580)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (580)
..+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|+..++++++ ..+.+...++.+...+.
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 88899999999999999999999885 45 456777788889999999999999999765 23445778888999999
Q ss_pred hcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 482 KSGKIEDACKVVSTM-PMKPST-R-------ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
..|++++|++.|++. ...|+. . .++.....+...|++++|...++++.+.+|++...+..+++++.+.|++
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 999999999999886 333321 1 1122222334569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 041384 553 LGAEEVWRVMRAKG 566 (580)
Q Consensus 553 ~~A~~~~~~~~~~~ 566 (580)
++|++.|++..+..
T Consensus 559 ~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 559 DEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886643
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.7e-20 Score=181.77 Aligned_cols=314 Identities=13% Similarity=0.062 Sum_probs=210.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHH
Q 041384 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284 (580)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (580)
.+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------------------- 103 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR------------------- 103 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-------------------
Confidence 4455667777777777776642 12334555555556666666666665555443211000
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCC
Q 041384 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364 (580)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 364 (580)
......+..+...|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+.
T Consensus 104 ----------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 104 ----------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 0012345566666666666666666666666442 33445566666666666666666666666555432
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 041384 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSA 443 (580)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~ 443 (580)
.+.... ....+..+...+...|++++|...++++.+. .| +...+..+...
T Consensus 173 ~~~~~~---------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 223 (389)
T PRK11788 173 DSLRVE---------------------------IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDL 223 (389)
T ss_pred CcchHH---------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHH
Confidence 211100 0012345666777888888888888888875 34 35677778888
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
+.+.|++++|.++++++.+ .+......++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 8999999999999999665 222222456788889999999999999999987 35677777788999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCceeEEEeCC
Q 041384 523 MLAHQLIEAEPENAANYTLLSMVCSE---SGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (580)
.+++++.+..|++.. +..+...+.. .|+.+++..+++++.+.+++++|.+..-.+|+
T Consensus 303 ~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~ 362 (389)
T PRK11788 303 ALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGF 362 (389)
T ss_pred HHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCC
Confidence 999999999988775 4444444443 56999999999999999999999976555553
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6.9e-20 Score=168.65 Aligned_cols=420 Identities=12% Similarity=0.105 Sum_probs=335.9
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC---CeehHHHHHHHHHhc
Q 041384 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDS 209 (580)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~ 209 (580)
..+....-+.|++..|++.-..+-+.+ +.+....-.+-.++....+.+.....-....+. -..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334455567789999988777766654 444444555556677777766655443333222 456899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHH-HHHHHcCCCHHHHH
Q 041384 210 QNYDTGIDLFRAMQREGVKP-TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM-HMYCECTEALHPAR 287 (580)
Q Consensus 210 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~a~ 287 (580)
|++++|+.+++.+.+. +| ....|..+..++...|+.+.|...|...++.+ |+.....+-+ ..+...|+ +.++.
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr-l~ea~ 204 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR-LEEAK 204 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc-cchhH
Confidence 9999999999999986 45 46789999999999999999999999887754 4444433322 23333566 66666
Q ss_pred HHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhC
Q 041384 288 IIFERTKV--K-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN-SVTLLAILSSCTRQSFLSHGLGVHCYIMKAG 363 (580)
Q Consensus 288 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 363 (580)
..+.+... | -...|+.|...+..+|+...|++.|++..+. .|+ ...|..|-..|...+.++.|...+.......
T Consensus 205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 66554442 2 3457899999999999999999999998855 454 3578888888888899999998888777643
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 041384 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RD-FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLA 439 (580)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ 439 (580)
+.....+..+...|...|.++.|...+++..+ |+ +..|+.|..++...|++.+|...+.+.... .|+. ...+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence 33566777788889999999999999999876 33 358999999999999999999999999884 5654 78889
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPST-RILSSLVSACRIHG 516 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~ 516 (580)
|...+...|.+++|..+|...++ +.|. ....+.|...|..+|++++|+.-+++. .++|.. ..++.+...|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999999764 4455 667899999999999999999999988 577864 68999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+.+.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|++-+++.++..+
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999887654
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-17 Score=160.19 Aligned_cols=548 Identities=14% Similarity=0.077 Sum_probs=359.8
Q ss_pred CCchhhHHHHHHHHHcc--CCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCC---
Q 041384 4 KHFYEQTLHLYKQELHP--SGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK--- 78 (580)
Q Consensus 4 ~~~~~~a~~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 78 (580)
.|+|..|+.+| ..... ...+||...- +=..+...++. +.|...|.+..+.. |-++.++..|--.-....+
T Consensus 177 kkdY~~al~yy-k~al~inp~~~aD~rIg--ig~Cf~kl~~~-~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 177 KKDYRGALKYY-KKALRINPACKADVRIG--IGHCFWKLGMS-EKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred cccHHHHHHHH-HHHHhcCcccCCCccch--hhhHHHhccch-hhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHH
Confidence 46777777777 44322 2233333322 22344556666 67777777776654 2233333333222222222
Q ss_pred chHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHhhccCCcHHHHHHHH
Q 041384 79 PESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV--LKAELLAGIISLCSQIGELELGRQIHA 153 (580)
Q Consensus 79 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~ 153 (580)
+..+..++...- ..|+...+.|.+.|...|+++.+..+.+-+...... .-...|-.+-+++-..|+++.|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 333333333322 347777888888888888888888888877664311 123457777788888888888888888
Q ss_pred HHHHhCCCCCc-hHHHhHHHHHhHhcCCHHHHHHHHhcCCC--C-CeehHHHHHHHHHhcC----ChhHHHHHHHHHHHc
Q 041384 154 LVIVDGSFELS-VFVSTALLDLYSKCHHWLIALRVFEQMVI--R-NEVSWTAMISGCIDSQ----NYDTGIDLFRAMQRE 225 (580)
Q Consensus 154 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~ 225 (580)
+..+.. +.+ ...+-.|...+.+.|+.+.+...|+.+.. | +..+...|...|...+ ..+.|..++.+..+.
T Consensus 332 ~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 877654 222 44455677888888888888888888733 2 4445555555555553 346666666665554
Q ss_pred CCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHH----HhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC------
Q 041384 226 GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAY----CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV------ 295 (580)
Q Consensus 226 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~------ 295 (580)
- +-|...|..+...+.....+.. ..++..+. ..+..+.+...+.+...+...|. +..|...|+....
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~-~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN-IEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC-hHHHHHHHHHHhhhhhhhc
Confidence 2 3456666666666555443333 55554443 45555777788888888888888 8888877765431
Q ss_pred -CChh------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc
Q 041384 296 -KDVV------IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367 (580)
Q Consensus 296 -~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 367 (580)
++.. +--.+...+-..++++.|.+.|+.+... .|+-. .|..+.-.....+...+|...+....... ..+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 1221 1122445555667888888999888876 45544 34344333334577888888888877643 445
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHh------------cCChHHHHHHHHHHHHcCC
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA-----RDFVSWTTLISGYGF------------HGYGEEALQLFLEMQESGV 430 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~g~ 430 (580)
+..+..+...|.+..++..|.+-|..+.+ +|..+.-.|...|.+ .+..++|+++|.+.....
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 55556667788888888888775554443 355555555554432 345678999999888852
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHH
Q 041384 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP----MKPSTRILS 506 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 506 (580)
+-|...-+.+.-.++..|+++.|..+|.++.+... ....+|-.+..+|..+|++..|+++|+..- -..++....
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 33667778888888999999999999999655332 334557889999999999999999998872 235778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-------------------CChHHHHHHHHHHHhCCC
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES-------------------GNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~ 567 (580)
.|.+++.+.|++.+|.+.+..+....|.|+.+...++-+..+. +..+.|.++|..+...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999877777655543 366778888888877654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.6e-17 Score=172.31 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=108.7
Q ss_pred HhcCCHHHHHHHHhcCCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCC
Q 041384 379 SKCGSITSSHQIFNEMAARD---FV-SWTTLISGYGFHGYGEEALQLFLEMQESGVEPD-----AITVLAILSACNHAGL 449 (580)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~ 449 (580)
...|++++|...|+.+.+.+ +. ....+...|...|++++|+..|+++.+. .|. ......+..++...|+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhccc
Confidence 34456666666666555421 11 1112345566666666666666665543 221 1334444555566666
Q ss_pred HHHHHHHHHHHHHhhC----------CCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 041384 450 VKEAETLFNNVMKEKK----------IALA---IEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRI 514 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 514 (580)
+++|..+++.+..... -.|+ ...+..++..+...|+.++|+++++++. .+.+...+..++..+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 6666666666443210 0112 1233455566667777777777777662 23355566667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.|++++|++.++++.+..|++...+..++..+...|++++|..+++++++..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777777777777777777777777777777766543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.3e-17 Score=169.10 Aligned_cols=368 Identities=13% Similarity=0.033 Sum_probs=236.7
Q ss_pred hcCCHHHHHHHHhcCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhH
Q 041384 177 KCHHWLIALRVFEQMVIR------NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNG 250 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (580)
+..+|+.---+|....+. +......++..+.+.|++++|..++.........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 344555444444443221 23334455667777788888888877777663333 33344444555667888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 041384 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE 327 (580)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 327 (580)
...++.+.+..+. +...+..+...+...|+ .+.|...+++... .+...+..+...+...|++++|...++.+...
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~-~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ-YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 8888777766432 34445555566666666 6666666665432 24556777777888888888888888877655
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHH
Q 041384 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTT 404 (580)
Q Consensus 328 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 404 (580)
... +...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...+++... .+...+..
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 322 22222222 34667788888888888777654334444445556677778888888888887665 24456677
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 405 LISGYGFHGYGEE----ALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 405 l~~~~~~~~~~~~----a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
+...+...|++++ |...+++..+. .| +...+..+...+...|++++|...++++++. .+.+...+..+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 7777888888775 67888887774 45 4466777777788888888888888886652 22234556667778
Q ss_pred hhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 041384 480 LGKSGKIEDACKVVSTMP-MKPSTRI-LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
|.+.|++++|+..++++. ..|+... +..+..++...|+.++|+..++++.+..|.+. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 888888888888887763 4454433 33445667778888888888888888877764 234445555
Q ss_pred HHHHHHhC
Q 041384 558 VWRVMRAK 565 (580)
Q Consensus 558 ~~~~~~~~ 565 (580)
.+.+..+.
T Consensus 396 ~~~~~~~~ 403 (656)
T PRK15174 396 ALDGQISA 403 (656)
T ss_pred HHHHHHHh
Confidence 55555543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.1e-16 Score=155.62 Aligned_cols=546 Identities=12% Similarity=0.053 Sum_probs=388.8
Q ss_pred hhhHHHHHHHHHccCCCCCCCcchHHHHHHhh--cccchhHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCCchHH
Q 041384 7 YEQTLHLYKQELHPSGLYSNTAILPSVIKACA--YAQTHQHFGLQLHCTALKSG--SDADPVISNSLISMYAKFSKPESA 82 (580)
Q Consensus 7 ~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 82 (580)
.+.|...| ..+.... ....+-.+-++|. ..+++ ..|..+|...+... .+||+.+ .+-..+.+.|+.+.|
T Consensus 146 ~~~A~a~F-~~Vl~~s---p~Nil~LlGkA~i~ynkkdY-~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQF-HFVLKQS---PDNILALLGKARIAYNKKDY-RGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHH-HHHHhhC---CcchHHHHHHHHHHhccccH-HHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhH
Confidence 57888888 6666542 2223444445554 45688 89999999976654 5666654 334567889999999
Q ss_pred HHhhccCCCCCccchHHHHHH---HHhC---CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHH
Q 041384 83 YQLFDEMPYRDTISWNSIINC---FTQN---GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVI 156 (580)
Q Consensus 83 ~~~~~~~~~~~~~~~~~li~~---~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 156 (580)
+..|+...+-|+...++++.. -... ..+..++.++...-... .-++...+.|..-+.-.|+++.+..+...+.
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 999998876555544444432 1222 33556666666655432 3477888889999999999999999999988
Q ss_pred HhCCCC--CchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC--C--eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041384 157 VDGSFE--LSVFVSTALLDLYSKCHHWLIALRVFEQMVIR--N--EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230 (580)
Q Consensus 157 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 230 (580)
... .. .-...|--+..+|-..|++++|..+|.+..+. + +..+--+...+.+.|+.+.+...|+...+. .+-+
T Consensus 298 ~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~ 375 (1018)
T KOG2002|consen 298 KNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNN 375 (1018)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Ccch
Confidence 764 11 12345777899999999999999999887443 2 344556789999999999999999998876 2334
Q ss_pred HHHHHHHHHHHhcCC----CchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC-----CHHHHHHHHh-hCCCCChhh
Q 041384 231 RVTLTIVLLACAELR----DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE-----ALHPARIIFE-RTKVKDVVI 300 (580)
Q Consensus 231 ~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~a~~~~~-~~~~~~~~~ 300 (580)
..|..++...|+..+ ..+.|..++.+..+.- +.|...|-.+...+...+. ++..|..++. .+....+..
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 567777777777664 4566666666665554 3355555555555544322 1334443333 333456778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC---CCC------CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-hhH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLE---RIE------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD-VSI 370 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 370 (580)
.|.+...+...|++..|...|+..... ... ++..+-..+....-..++.+.|.+.|..+.+.. |+ +..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHH
Confidence 899999999999999999999987654 112 232334455666677889999999999998863 22 222
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNH 446 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~ 446 (580)
|--+.......+...+|...+..+.. .++..++.+...+.....+..|.+-|+...+.- ..+|..+...|.+.|..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 33333222334677888888887765 467778778878999889999988777776542 23577777777775542
Q ss_pred ------------cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041384 447 ------------AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSAC 512 (580)
Q Consensus 447 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 512 (580)
.+..++|+++|.++++ ..+.+...-|-+.-+++..|++.+|..+|.... ......+|..+...|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHH
Confidence 2456788999988775 456677788889999999999999999999883 234567899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 513 RIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
...|++-.|+++|+...+.. .+++.+...|+.++.+.|++.+|.+.+...+...+
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99999999999999998866 45888899999999999999999999888766544
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2e-18 Score=167.32 Aligned_cols=304 Identities=14% Similarity=0.091 Sum_probs=170.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCc--hHHHhHHHHHhHhcCC
Q 041384 103 CFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELS--VFVSTALLDLYSKCHH 180 (580)
Q Consensus 103 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 180 (580)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+...+. ..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~---------- 112 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE---------- 112 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH----------
Confidence 3445566666666666666542 123345555555555666666666666655543311110 123344
Q ss_pred HHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 041384 181 WLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCC 260 (580)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (580)
+...|.+.|++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.
T Consensus 113 ---------------------La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 113 ---------------------LGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred ---------------------HHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 444444455555555555554432 1123344444445555555555555554444433
Q ss_pred cCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041384 261 GFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340 (580)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 340 (580)
+..+.... ....+..+...+.+.|++++|...|+++.+.. +.+...+..+.
T Consensus 171 ~~~~~~~~----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 221 (389)
T PRK11788 171 GGDSLRVE----------------------------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLG 221 (389)
T ss_pred cCCcchHH----------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHH
Confidence 22110000 00112334455566677777777777766543 22344555566
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHH
Q 041384 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 418 (580)
..+...|++++|.++++++.+.+......++..++.+|...|++++|...++++.+ |+...+..++..+.+.|++++|
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 66667777777777777766554333344556666777777777777777776554 4445556677777777888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCCCChh
Q 041384 419 LQLFLEMQESGVEPDAITVLAILSACNH---AGLVKEAETLFNNVMKEKKIALAIE 471 (580)
Q Consensus 419 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 471 (580)
..+++++.+. .|+..++..++..+.. .|+.+++..+++++++ .++.|++.
T Consensus 302 ~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH-HHHhCCCC
Confidence 8888777764 6777777777766553 4577778888887554 55566554
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=6.8e-17 Score=142.65 Aligned_cols=371 Identities=13% Similarity=0.135 Sum_probs=182.9
Q ss_pred CCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHH
Q 041384 92 RDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171 (580)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 171 (580)
....+|.+||.++|+--..+.|.+++++..+...+.+..+||.+|.+-.-. ..++++.+|.... ..||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-MTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-cCCchHhHHHH
Confidence 344556666666666666666666666665555555666666665443211 1245555555555 45555555544
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchh-H
Q 041384 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN-G 250 (580)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a 250 (580)
+.+..+.|+++.|. ..|++++.+|++-|+.|...+|..+|..+++.++..+ +
T Consensus 280 L~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 44444444443332 2467889999999999999999999999999888755 3
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--
Q 041384 251 KAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-- 328 (580)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-- 328 (580)
..++..+... ..-+-|.-....|...|...+..|....+.+-|.++-.-.....
T Consensus 333 s~~i~dI~N~------------------------ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 333 SSWINDIQNS------------------------LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred HHHHHHHHHh------------------------hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 3344443321 00000111111122233333333333334333333322221110
Q ss_pred --CCCCH---HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHH
Q 041384 329 --IEPNS---VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT 403 (580)
Q Consensus 329 --~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 403 (580)
+.|+. .-|..+....+.....+.....++.|.-.-.-|+..+...++++....+.++-..+++.++..-
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~------ 462 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY------ 462 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh------
Confidence 11221 1233444444444555555555555554444455555455555554455555444444443211
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh
Q 041384 404 TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482 (580)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (580)
...-+-+--++++..|......|+...-..+-....+ .-++.++.+.-..-++ ....+....+.+.-.+.+
T Consensus 463 ------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 463 ------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLR 534 (625)
T ss_pred ------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHH
Confidence 1111112233444444444344433221111111111 0122222221111122 233444456777777788
Q ss_pred cCChHHHHHHHHhCC----CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 483 SGKIEDACKVVSTMP----MKPSTRILS---SLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 483 ~g~~~~A~~~~~~~~----~~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
.|+.++|.+++.-.. .-|.....+ -++.+..+.++..+|..+++-+...+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 888888888776551 113333333 55566667778888888888886655
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2.2e-16 Score=160.97 Aligned_cols=430 Identities=11% Similarity=-0.026 Sum_probs=287.2
Q ss_pred HHHHHHHHHcCCCchHHHHhhccCC--CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccC
Q 041384 66 SNSLISMYAKFSKPESAYQLFDEMP--YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143 (580)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 143 (580)
+......+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455667888999999999999865 5677788889999999999999999999998853 225667888889999999
Q ss_pred CcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 041384 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223 (580)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 223 (580)
++++|...+..+...+++.+ .....++..+........+...++.- ..+...+..+.. +...........-+..-.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRN--EQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999988877765542221 11222222222212223344444332 223333333322 322222222222222111
Q ss_pred HcCCCCCH-HHHHHHHHH---HhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChh
Q 041384 224 REGVKPTR-VTLTIVLLA---CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV 299 (580)
Q Consensus 224 ~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 299 (580)
+ ..|+. ..+..+... ....+++++|.+.++...+.+.. ......
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~------------------------------~~~~a~ 332 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL------------------------------GEKEAI 332 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC------------------------------ChhhHH
Confidence 1 11111 011111100 12234566666666655543310 011334
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN-SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (580)
.|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++...+.. +.+..++..+...+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5666667778889999999999988765 344 5577778888888999999999999887764 44577888888899
Q ss_pred HhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 041384 379 SKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAE 454 (580)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~ 454 (580)
...|++++|...|++..+. +...+..+...+.+.|++++|+..+++.... .| +...+..+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999987652 4556777888899999999999999998875 45 5678888899999999999999
Q ss_pred HHHHHHHHhhCC-CCC-hh---HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 455 TLFNNVMKEKKI-ALA-IE---HYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 455 ~~~~~~~~~~~~-~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
..|+++++...- .+. .. .++.....+...|++++|.+++++. ...| +...+..+...+.+.|++++|+..+++
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999997652111 110 11 1222223344579999999999986 4455 445788899999999999999999999
Q ss_pred HHhcCCCCch
Q 041384 528 LIEAEPENAA 537 (580)
Q Consensus 528 ~~~~~~~~~~ 537 (580)
+.++.+....
T Consensus 568 A~~l~~~~~e 577 (615)
T TIGR00990 568 AAELARTEGE 577 (615)
T ss_pred HHHHhccHHH
Confidence 9988765443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.5e-16 Score=165.19 Aligned_cols=223 Identities=10% Similarity=0.027 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHhhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHH
Q 041384 315 SEAMKLFSRMRLE-RIEPNSV-TLL----AILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 315 ~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 387 (580)
++|+..++.+.+. ...|+.. .+. ..+..+...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 5666666666643 1222221 111 1123445567777788777777766532 221 112245677778888888
Q ss_pred HHHHhcCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhc
Q 041384 388 HQIFNEMAARDF-------VSWTTLISGYGFHGYGEEALQLFLEMQESG-----------VEPDA---ITVLAILSACNH 446 (580)
Q Consensus 388 ~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-----------~~p~~---~~~~~l~~~~~~ 446 (580)
...|+++...+. .....+..++...|++++|..+++++.+.. -.|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 888777654221 234556667778888888888888887642 12332 345567778889
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGRLEVAEML 524 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 524 (580)
.|+.++|++++++++. ..+.+...+..++..+...|++++|++.+++. ...|+ ...+..++..+...|++++|+.+
T Consensus 372 ~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999765 34455778889999999999999999999988 35564 56777778888999999999999
Q ss_pred HHHHHhcCCCCchHHH
Q 041384 525 AHQLIEAEPENAANYT 540 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~ 540 (580)
++++++..|+++.+..
T Consensus 450 ~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 450 TDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHhCCCCHHHHH
Confidence 9999999999997543
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.9e-17 Score=165.71 Aligned_cols=352 Identities=11% Similarity=0.019 Sum_probs=268.4
Q ss_pred hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--C-CeehHHHHHHHH
Q 041384 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R-NEVSWTAMISGC 206 (580)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~ 206 (580)
.....++..+.+.|+.+.|..++...+... +.+......++.+....|++++|...|+++.. | +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 345556777888899999999999888875 55556666666777778999999998888733 3 455677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHH
Q 041384 207 IDSQNYDTGIDLFRAMQREGVKPT-RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285 (580)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 285 (580)
...|++++|.+.+++..+. .|+ ...+..+...+...|++++|...++.+......
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~---------------------- 176 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP---------------------- 176 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----------------------
Confidence 8889999999888888764 343 556667777788888888887777665443221
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC
Q 041384 286 ARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365 (580)
Q Consensus 286 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (580)
+...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++...+.. +
T Consensus 177 -----------~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 177 -----------RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred -----------CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 22233333 3478899999999999998876534455555666778889999999999999999865 4
Q ss_pred CchhHHHHHHHHhHhcCCHHH----HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 041384 366 FDVSIGNALMNMYSKCGSITS----SHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD-AITV 437 (580)
Q Consensus 366 ~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~ 437 (580)
.+...+..+...+...|++++ |...|++... .+...+..+...+...|++++|+..+++..+. .|+ ...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 467778889999999999986 7889988775 35568889999999999999999999999985 564 5667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 041384 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAI-EHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIH 515 (580)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 515 (580)
..+..++...|++++|...++.+++. .|+. ..+..+..++...|+.++|...|++. ...|+.. .
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~ 387 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------P 387 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------h
Confidence 77888999999999999999997653 3443 33444677889999999999999987 3455542 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 041384 516 GRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~ 536 (580)
.++++|...+.++.+.-+...
T Consensus 388 ~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 388 QSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred hhHHHHHHHHHHHHHhcCCcc
Confidence 556778888888887664433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5.9e-16 Score=157.39 Aligned_cols=425 Identities=9% Similarity=0.034 Sum_probs=266.6
Q ss_pred HHHcCCCchHHHHhhccCCC--CCc-cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHH
Q 041384 72 MYAKFSKPESAYQLFDEMPY--RDT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELG 148 (580)
Q Consensus 72 ~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 148 (580)
...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++.... ..........+...+...|+++.|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35677777888887777663 322 12336677777777888887777777611 111222222234466666777777
Q ss_pred HHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHh--cCChhHHHHHHHHHHHcC
Q 041384 149 RQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID--SQNYDTGIDLFRAMQREG 226 (580)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~ 226 (580)
.++++++.+.. |.+..++..++..+...++.++|++.++++.+.+......+..++.. .++..+|++.++++.+.
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 77777777765 44556666667777777777777777777754433322223333333 44444577777777665
Q ss_pred CCCC-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC-Chhh----
Q 041384 227 VKPT-RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVI---- 300 (580)
Q Consensus 227 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~---- 300 (580)
.|+ ...+.....++.+.|-...|.++ ....+.. +...
T Consensus 199 -~P~n~e~~~~~~~~l~~~~~~~~a~~l------------------------------------~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 199 -APTSEEVLKNHLEILQRNRIVEPALRL------------------------------------AKENPNLVSAEHYRQL 241 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCcHHHHHH------------------------------------HHhCccccCHHHHHHH
Confidence 333 33444445555555554444433 3322210 1111
Q ss_pred ----HHHHHHHH-H----hCCC---hhHHHHHHHHHHHC-CCCCCH-HH----HHHHHHHhhccCChHHHHHHHHHHHHh
Q 041384 301 ----WSSIIRGY-S----QSGD---LSEAMKLFSRMRLE-RIEPNS-VT----LLAILSSCTRQSFLSHGLGVHCYIMKA 362 (580)
Q Consensus 301 ----~~~l~~~~-~----~~~~---~~~a~~~~~~m~~~-~~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~ 362 (580)
...+++.- . ...+ .+.|+.-++.+... +-.|.. .- ..-.+-++...++..++++.++.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 11111110 0 1112 34455555655542 222322 11 223455677888899999999999888
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---
Q 041384 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD---------FVSWTTLISGYGFHGYGEEALQLFLEMQESGV--- 430 (580)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--- 430 (580)
+.+....+-.++.++|...+++++|..+++.+...+ ......|..++...+++++|..+++++.+.-.
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 877666777888899999999999999998875421 22246788888888999999999988887311
Q ss_pred --------CCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C
Q 041384 431 --------EPDA---ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M 498 (580)
Q Consensus 431 --------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 498 (580)
.||+ ..+..++..+...|+..+|++.+++++. .-+-+......+.+.+...|.+.+|+..++... .
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 1222 2344456667788888888888888654 445567777888888888888888888887763 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 041384 499 KP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539 (580)
Q Consensus 499 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 539 (580)
.| +..+....+.++...|++++|..+.+.+.+..|+++.+-
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 45 445666777778888888888888888888888888643
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.8e-15 Score=153.91 Aligned_cols=443 Identities=10% Similarity=0.007 Sum_probs=314.6
Q ss_pred hhcccchhHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHcCCCchHHHHhhccCCCCCccch-HHH--HHHHHhCCChh
Q 041384 37 CAYAQTHQHFGLQLHCTALKSGSDADP--VISNSLISMYAKFSKPESAYQLFDEMPYRDTISW-NSI--INCFTQNGFYV 111 (580)
Q Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l--i~~~~~~~~~~ 111 (580)
..+.|+. ..|...|++.++.. |+. .++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|+++
T Consensus 44 ~~r~Gd~-~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDT-APVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCH-HHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 4578999 99999999998875 443 344 788888899999999999999886644444 334 44777889999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcC
Q 041384 112 RSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM 191 (580)
Q Consensus 112 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (580)
+|+++|+++.+.... ++..+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..+|++.++++
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999987533 46777788888999999999999999998764 44555555555555566776699999998
Q ss_pred CC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhH
Q 041384 192 VI--R-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268 (580)
Q Consensus 192 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (580)
.. | +...+..+..++.+.|-...|+++..+-... +.| .....+- .+.+.+ .++.+..++..-
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~~l~--------~~~~a~----~vr~a~~~~~~~ 260 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYRQLE--------RDAAAE----QVRMAVLPTRSE 260 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHHHHH--------HHHHHH----HHhhcccccccc
Confidence 43 4 5667788889999999999999877653211 111 1111110 011111 111111111000
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCCC-CCh-----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041384 269 SAALMHMYCECTEALHPARIIFERTKV-KDV-----VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342 (580)
Q Consensus 269 ~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 342 (580)
-..+.....++.....++..... |.. ...--.+-++...|+..++++.|+.+...+.+....+...+..+
T Consensus 261 ----~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 ----TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ----hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 00011111113333444443332 211 12234556788999999999999999999877667788999999
Q ss_pred hhccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCc------------------
Q 041384 343 CTRQSFLSHGLGVHCYIMKAG-----LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF------------------ 399 (580)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 399 (580)
|...+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+..+
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997743 233444457889999999999999999998876211
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
..+..++..+.-.|+..+|++.++++... .| |......+.+.+...|.+.+|++.++.+.. -.+-+..+....+.
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~ 492 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHH
Confidence 13445677888999999999999999885 45 778888999999999999999999976432 23334666777888
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 041384 479 LLGKSGKIEDACKVVSTM-PMKPSTRILSSLVS 510 (580)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 510 (580)
.+...|++.+|..+.+.. ...|+......|-.
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 889999999999999877 34565554444433
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.7e-14 Score=127.74 Aligned_cols=428 Identities=13% Similarity=0.079 Sum_probs=303.8
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh--ccCCcHHH-HHHHHHHHHhCCCCCchHHHh
Q 041384 93 DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS--QIGELELG-RQIHALVIVDGSFELSVFVST 169 (580)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 169 (580)
.+.+-|.|+.. ...|.+.++.-+|+.|...|+..++..-..|++..+ ...+..-+ .+.|-.|...| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc-
Confidence 45566666654 567899999999999999999888887777765443 33333322 23333444443 3344444
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchh
Q 041384 170 ALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRN 249 (580)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (580)
+.|.+.+ ++-+....+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-+-..+
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 2344433 555556667789999999999999999999999999988888999999999987554332
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 250 GKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI 329 (580)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 329 (580)
++++.+|....+.||..|+++++.+..+.|+ ++.++ ..|.+++.+|++-|+
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~-F~~ar---------------------------~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGK-FEDAR---------------------------KAALQILGEMKEIGV 308 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc-hHHHH---------------------------HHHHHHHHHHHHhCC
Confidence 6778888888888777777777777666666 33332 357788999999999
Q ss_pred CCCHHHHHHHHHHhhccCChHH-HHHHHHHHHH----hCCCC----chhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---
Q 041384 330 EPNSVTLLAILSSCTRQSFLSH-GLGVHCYIMK----AGLNF----DVSIGNALMNMYSKCGSITSSHQIFNEMAAR--- 397 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 397 (580)
.|...+|..+|..+++.++..+ +..++.++.. ..++| +...|...+..|.+..+.+-|.++-.-+...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 9999999999999988888754 4444444443 22222 5566777888888888988888887765542
Q ss_pred --------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 398 --------DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 398 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
...-|..+....++....+.-...|+.|.-.-+-|+..+...++++....|.++-..++|..+. ..|....
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r 467 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFR 467 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhhhhhh
Confidence 1234667778888888999999999999988788999999999999999999999999999844 4665555
Q ss_pred hhHHHHHHHHhhhcC-Ch--------HH-----HHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSG-KI--------ED-----ACKVVSTM--------PMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
......+...+++.. +. .. |..+++.. ..+-.....+.++-.+.+.|..++|-+++.-
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l 547 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGL 547 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 555555555555544 11 00 11111111 1233455677777888899999999999998
Q ss_pred HHhcC---CCCch--HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 528 LIEAE---PENAA--NYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 528 ~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
..+.. |..+. +...+.+.-.+.++..+|..+++-|...+.
T Consensus 548 ~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 548 FLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 86544 43333 244667777788899999999998876554
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=9.3e-13 Score=123.07 Aligned_cols=509 Identities=10% Similarity=0.059 Sum_probs=381.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 041384 47 GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFV 126 (580)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 126 (580)
-.+++...+++ +|.++..|-..+. ..+.+.|.-++....+--. +-.-|.-++.+..-++.|..+++..++. ++
T Consensus 365 K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~-ip 437 (913)
T KOG0495|consen 365 KKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREI-IP 437 (913)
T ss_pred HHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence 34556655555 3455555544332 3445556666665442111 1122344556666788888888888775 66
Q ss_pred CCHhhHHHHHHHhhccCCcHHHHHHHHHHH----HhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC------Ce
Q 041384 127 LKAELLAGIISLCSQIGELELGRQIHALVI----VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR------NE 196 (580)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 196 (580)
-++..|.+....--..|+.+....+.++.+ ..| +..+...|..=...+-+.|..-.+..+......- -.
T Consensus 438 td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 438 TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 688888888887788888888888877643 344 7777777777777777777777777766655221 23
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 041384 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276 (580)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (580)
.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....++++++..-. -....+-.....+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHH
Confidence 47888888888999999999998887764 223445555555555666888888888888887643 3455666666777
Q ss_pred HHcCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 041384 277 CECTEALHPARIIFERTK---VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353 (580)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 353 (580)
...|+ +..++.++...- ..+...|-+-+.....+.+++.|..+|.+.... .|+...|..-+..--..++.++|.
T Consensus 595 w~agd-v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGD-VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 77888 888888777554 236667888888888999999999999988754 677777766666666788999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 041384 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430 (580)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 430 (580)
+++++..+. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.|...--+.|++-+|..++++.+-.+
T Consensus 672 rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 672 RLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 999887765 244466778888888899999999999887665 3 45578888888888889999999999988763
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 041384 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 510 (580)
+-|...|...++.=.+.|..+.|..+..++++ ..+.+...|..-|....+.++-..+...+.+. +.|+.+..++..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHH
Confidence 34678888999999999999999999998876 45666777888888888888877777777766 456677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEE
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFSRI 576 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 576 (580)
.+....+++.|.+-|.++...+|++..+|..+...+.+.|.-++-.+++.+..... |.-|..|.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 88899999999999999999999999999999999999999999999999987765 33555554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=8e-16 Score=137.02 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=166.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 041384 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQ 420 (580)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 420 (580)
...|++++|.+.+++.....-......||.- -.+...|++++|++.|-++.. .+......+...|-...+...|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4567778888887777765444444444432 345677888999888876654 566777778888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 041384 421 LFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMK 499 (580)
Q Consensus 421 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 499 (580)
++-+..+. ++.|+....-|...|-+.|+-..|.+.+-+-- +-++.+..+...|...|....-+++|+.+|++. .++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99887774 44477888999999999999999999877632 457778999999999999999999999999998 488
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 041384 500 PSTRILSSLVSAC-RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551 (580)
Q Consensus 500 p~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
|+..-|..++..| .+.|++.+|..+++...+..|.+..++..|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988876 567999999999999999999999999999998887774
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=3.2e-13 Score=131.03 Aligned_cols=520 Identities=10% Similarity=0.046 Sum_probs=325.1
Q ss_pred hhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccC---CCCCccchHHHHHHHHhCCChhHH
Q 041384 37 CAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEM---PYRDTISWNSIINCFTQNGFYVRS 113 (580)
Q Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a 113 (580)
+++ |+. +.|..++.++++.. +.+...|..|...|-..|+.+++...+-.. .+.|...|..+.....+.|++..|
T Consensus 150 far-g~~-eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDL-EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCH-HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 444 888 99999999999885 678889999999999999999998866443 355778899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHh----HHHHHhHhcCCHHHHHHHHh
Q 041384 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVST----ALLDLYSKCHHWLIALRVFE 189 (580)
Q Consensus 114 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 189 (580)
.-+|.+..+.. +++...+---...|-+.|+...|..-+.++.... .+.|..-.. ..+..+...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999998864 3344444455677888999999999999998876 222322222 34555667777788888888
Q ss_pred cCCCC-----CeehHHHHHHHHHhcCChhHHHHHHHHHHHcC---------------------------CCCCHHHHHHH
Q 041384 190 QMVIR-----NEVSWTAMISGCIDSQNYDTGIDLFRAMQREG---------------------------VKPTRVTLTIV 237 (580)
Q Consensus 190 ~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~~~~~~~l 237 (580)
..... +...++.++..+.+...++.|......+.... +.++... ..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 76442 55678889999999999999998888877621 2222222 223
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhc--CCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhC
Q 041384 238 LLACAELRDLRNGKAIHGYAYCCG--FDFDHHLSAALMHMYCECTEALHPARIIFERTKV----KDVVIWSSIIRGYSQS 311 (580)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 311 (580)
.-++.+.+..+....+.....+.. +.-+...+..+..+|...|. ...|..++..... .+...|-.+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~-~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK-YKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc-HHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 344556666666666777777766 44456778888888998888 8888888887653 2556788888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHhHhcCC
Q 041384 312 GDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM--------KAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 312 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
|..+.|...|+...... +-+...-.+|-..+...|+.++|.+.++.+. ..+..|+..+.......+...|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999998887653 2334455566777788899999998888844 23455666666666677777787
Q ss_pred HHHHHHHHhcCCCC--------------------------CcchHHHHHHHHHhcCChHHHHHH------HHHHHHcCCC
Q 041384 384 ITSSHQIFNEMAAR--------------------------DFVSWTTLISGYGFHGYGEEALQL------FLEMQESGVE 431 (580)
Q Consensus 384 ~~~A~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~------~~~~~~~g~~ 431 (580)
.++=..+-..|..+ +.......+.+-.+.++......- +..-...|+.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 76644433333210 001111122222222221111110 0111111222
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChh----HHHHHHHHhhhcCChHHHHHHHHhCC------CC
Q 041384 432 PDA--ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIE----HYACYVDLLGKSGKIEDACKVVSTMP------MK 499 (580)
Q Consensus 432 p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------~~ 499 (580)
.+. ..+.-++..+++.+++++|..+...++...-+..+.. .-...+.+....+++..|...++.+- ..
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 222 1234455556666666666666666555333333322 11233344455666666666666552 11
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 500 P-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN-AANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 500 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
| ....|+...+...+.++-.--.+.+..+....|.+ +......+......+.+.-|...+-+.-.
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 2 22344444444555555444445554544444444 33344444445555666666655544443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.1e-12 Score=127.43 Aligned_cols=559 Identities=11% Similarity=0.024 Sum_probs=370.5
Q ss_pred CCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHH
Q 041384 4 KHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAY 83 (580)
Q Consensus 4 ~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 83 (580)
.|+.++|.+++.+..++. +.+...|..+-..+-..|+. ..+...+-.+. +-.+.|...|..+.....+.|+++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~-eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDI-EKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccH-HHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 499999999994444443 45777899999999999999 77776544333 334667789999999999999999999
Q ss_pred HhhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH----HHHhhccCCcHHHHHHHHHHH
Q 041384 84 QLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI----ISLCSQIGELELGRQIHALVI 156 (580)
Q Consensus 84 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~ 156 (580)
-.|.+..+. +...+---+..|-+.|+...|.+.|.++.+...+.|..-+..+ ++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999987643 4333344466788899999999999999987543344444444 445566677788999998888
Q ss_pred HhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC----C----------------------CeehHH----HHHHHH
Q 041384 157 VDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI----R----------------------NEVSWT----AMISGC 206 (580)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------------------~~~~~~----~li~~~ 206 (580)
..++-..+...++.++..|.+...++.|......... + +..+|+ -++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 7554456677888999999999999998887765522 1 111222 223344
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHH
Q 041384 207 IDSQNYDTGIDLFRAMQREGVK--PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284 (580)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (580)
.+....+....+...+.+.++. -+...|.-+..++...|.+..|..++..+......-+..+|-.+..+|...+. .+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-YE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-HH
Confidence 4555555555666666666643 35667888999999999999999999999988777778899999999999999 99
Q ss_pred HHHHHHhhCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHhhccCChHHHH
Q 041384 285 PARIIFERTKVKDVV---IWSSIIRGYSQSGDLSEAMKLFSRMRL--------ERIEPNSVTLLAILSSCTRQSFLSHGL 353 (580)
Q Consensus 285 ~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~ 353 (580)
.|.+.++......+. .--.|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999887654433 344556678899999999999998642 234555555566666777788877766
Q ss_pred HHHHHHHHhC----------------------CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCC-----------CCCc-
Q 041384 354 GVHCYIMKAG----------------------LNFDVSIGNALMNMYSKCGSITSSHQIFNEMA-----------ARDF- 399 (580)
Q Consensus 354 ~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~- 399 (580)
.+...|+... ......+...++.+-.+.++.....+-...-. -.|.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5555554311 11112222223333333333222221111110 0111
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH---HH-HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC---hh
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAI---TV-LAILSACNHAGLVKEAETLFNNVMKEKKIALA---IE 471 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~---~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 471 (580)
..+.-++.++++.+++++|+.+...+.....-- +.. .+ ...+.++...+++..|...++.++...+...+ ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 234556777888888888888888877653211 222 22 23445566788888888888877664333222 22
Q ss_pred HHHHHHH-----------------------------------HhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH-HH--
Q 041384 472 HYACYVD-----------------------------------LLGKSGKIEDACKVVSTM-PMKPSTRILSSLVS-AC-- 512 (580)
Q Consensus 472 ~~~~l~~-----------------------------------~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~-- 512 (580)
.|+.... .+..++.+.-|+..+-+. ...|+.+..+.++. ++
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 2331111 122345566666655544 34465444433332 22
Q ss_pred --------HhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 513 --------RIHGRLEVAEMLAHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 513 --------~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.++-..-++..++++..++... .-.++..++++|...|-..-|..++++.++-.+
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 1222345678888888887755 677899999999999999999999999887643
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=4.5e-14 Score=136.12 Aligned_cols=518 Identities=12% Similarity=0.018 Sum_probs=289.4
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCC
Q 041384 12 HLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPY 91 (580)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 91 (580)
.+| -.++..|+.|+..+|..++..|+..|+. +.|- +|..|.-...+.+...++.++....+.++.+.+. .
T Consensus 11 nfl-a~~e~~gi~PnRvtyqsLiarYc~~gdi-eaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFL-ALHEISGILPNRVTYQSLIARYCTKGDI-EAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHH-HHHHHhcCCCchhhHHHHHHHHcccCCC-cccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 355 6778899999999999999999999999 8888 9999988888889999999999888888887765 6
Q ss_pred CCccchHHHHHHHHhCCChhH---HHHHHHHHH----HCCCCCCHhhHHHHHHHh--------------hccCCcHHHHH
Q 041384 92 RDTISWNSIINCFTQNGFYVR---SLEMFREMY----LCGFVLKAELLAGIISLC--------------SQIGELELGRQ 150 (580)
Q Consensus 92 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~~~~~~~~~ll~~~--------------~~~~~~~~a~~ 150 (580)
|...+|..|..+|.+.|+... +.+.++... ..|+.....-+-..+.++ ...|-++.+.+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999755 222222221 123221122222221211 11222333333
Q ss_pred HHHHHHHhCCCCCchHHHhHHHHHhHhc-CCHHHHHHHHhcCC-CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 041384 151 IHALVIVDGSFELSVFVSTALLDLYSKC-HHWLIALRVFEQMV-IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVK 228 (580)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 228 (580)
++..+-......|... +++-+... ..+++-..+..... .++..+|..++.+-..+|+.+.|..++.+|++.|++
T Consensus 161 ll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 3222111110011111 12222211 22344444433343 378899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 041384 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308 (580)
Q Consensus 229 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 308 (580)
.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+.+.|. ....... .+....+.+-...-
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-t~~~~e~-----sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-TKYGEEG-----SQLAHGFTAAVRSA 307 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-hhhcccc-----cchhhhhhHHHHHH
Confidence 998888888766 88888999999999999999999999888877776544 2222221 12222222222222
Q ss_pred HhCC-----Chh-----HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCC---CCchhHHHHHH
Q 041384 309 SQSG-----DLS-----EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL---NFDVSIGNALM 375 (580)
Q Consensus 309 ~~~~-----~~~-----~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~ 375 (580)
+-.| +.+ -....+++..-.|+......|.... -...+|.-+...++...+..... ..++..|..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 2223 111 1111222222223333332332222 22235665666665555543111 11233333333
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh---cC------------ChHHHHHHHHHHHHcC----CCC----
Q 041384 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF---HG------------YGEEALQLFLEMQESG----VEP---- 432 (580)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~------------~~~~a~~~~~~~~~~g----~~p---- 432 (580)
.-|. .++..+..........+... .. +...+.+-+..+.... ..|
T Consensus 387 rqyF------------rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 387 RQYF------------RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred HHHH------------HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 3333 22222111100001111111 00 1111111111111000 011
Q ss_pred ---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHH
Q 041384 433 ---DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-----MKPSTRI 504 (580)
Q Consensus 433 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~ 504 (580)
-...-+.++..|++.-+..+++..-+. .+..-+. ..|..|++.++.....+.|..+.++.. ...|...
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ek-ye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEK-YEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 011223344445554444455443333 3222222 457777777777777788877777773 2234455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 505 LSSLVSACRIHGRLEVAEMLAHQLIEAE---PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 505 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
+..+.+.+.+.+....+..+++++.+.- |.....+..+.+.....|+.+.-.++.+-+...|+.-
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 6666777777777777777777776532 3334556666666777777777777777777666654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=6.7e-11 Score=110.97 Aligned_cols=435 Identities=14% Similarity=0.074 Sum_probs=329.6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcC--
Q 041384 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-- 191 (580)
Q Consensus 114 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 191 (580)
.+++++..+. ++-++..|- +.....+.+.|+-++.++++- .+.+...|.+ |.+..-++.|.++++..
T Consensus 366 ~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec--cp~s~dLwlA----larLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC--CPQSMDLWLA----LARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh--ccchHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 3455555553 332333443 334455666788888888776 3555555554 44556677777777665
Q ss_pred -CCCCeehHHHHHHHHHhcCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCc-
Q 041384 192 -VIRNEVSWTAMISGCIDSQNYDTGIDLFRA----MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD- 265 (580)
Q Consensus 192 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 265 (580)
...+...|.+-...--.+|+.+....++++ +..+|+..+...|..=...|-..|..-.+..+....+..|+...
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 444777787777767778888888887765 45568888998888888888888999999999999888887643
Q ss_pred -hhHHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 041384 266 -HHLSAALMHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-TLLAIL 340 (580)
Q Consensus 266 -~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 340 (580)
..++..-.+.+.+.+. ++.++.+|..... .+...|......--..|..+....+|++.... .|... .+....
T Consensus 515 ~~~tw~~da~~~~k~~~-~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~a 591 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPA-IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYA 591 (913)
T ss_pred hHhHHhhhHHHHHhcch-HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHH
Confidence 3566666677777777 8888888876653 35567777777667788899999999998876 44443 444445
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHH
Q 041384 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 418 (580)
...-..|++..|..++....+... .+..++-+.+.......+++.|..+|.+... +....|.--+....-.++.++|
T Consensus 592 ke~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence 566678999999999999988763 3888899999999999999999999998776 5667777777777778899999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 419 LQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 419 ~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
++++++..+. .|+- ..|..+...+.+.++.+.|...|..-++ ..+..+..|-.|.+.-.+.|.+-.|..++++..
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 9999998885 6766 5677788889999999999999987443 455556678888888889999999999999884
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------------------CchHHHHHHHH
Q 041384 498 --MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE------------------------------NAANYTLLSMV 545 (580)
Q Consensus 498 --~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~ 545 (580)
.+.+...|...++.-.+.|+.+.|..++.++++.-|. |+.+...++..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 4458889999999999999999999988887765444 34455667777
Q ss_pred HHhcCChHHHHHHHHHHHhCCC
Q 041384 546 CSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+....++++|++.|.+..+.+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 7788888888888888877653
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.3e-12 Score=118.05 Aligned_cols=408 Identities=13% Similarity=0.048 Sum_probs=256.5
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHh
Q 041384 97 WNSIINCFTQNGFYVRSLEMFREMYLCGFVLK-AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175 (580)
Q Consensus 97 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (580)
+-...+-|.++|.+++|+..|.+.++. .|+ +.-|.....+|...|+|+.+.+.-...++.+ |.-+..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 344456677889999999999998874 567 7778888888889999999888888877754 33455677777777
Q ss_pred HhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHH--------HH-c--CCCCCHHHHHHHHHHHhcC
Q 041384 176 SKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM--------QR-E--GVKPTRVTLTIVLLACAEL 244 (580)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------~~-~--~~~p~~~~~~~ll~~~~~~ 244 (580)
-..|++++|+.=+ +-..+...+....-.--+.+++++. .+ + .+.|+.....+....+...
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7888887776422 1122222222222222222222211 11 1 1234333333322222110
Q ss_pred CCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHh-CCChhHHHHHHHH
Q 041384 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ-SGDLSEAMKLFSR 323 (580)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~ 323 (580)
-. .....+.......+..++.. .+.. ...+..|...+.+
T Consensus 265 ~~------------~~~~~~~~ksDa~l~~~l~~----------------------------l~~~~~e~Y~~a~~~~te 304 (606)
T KOG0547|consen 265 PK------------PLFDNKSDKSDAALAEALEA----------------------------LEKGLEEGYLKAYDKATE 304 (606)
T ss_pred cc------------ccccCCCccchhhHHHHHHH----------------------------HHhhCchhHHHHHHHHHH
Confidence 00 00000000001111111000 0000 0122233322222
Q ss_pred HHHCC-CCC-----CH------HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 041384 324 MRLER-IEP-----NS------VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF 391 (580)
Q Consensus 324 m~~~~-~~p-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 391 (580)
-.... ..+ |. .+......-+.-.|+.-.+..-|+..++....++. .|--+..+|....+.++....|
T Consensus 305 ~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 305 ECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred HhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHH
Confidence 11100 011 11 11111111223457777788888887776543332 2556667788888888888888
Q ss_pred hcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 041384 392 NEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467 (580)
Q Consensus 392 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (580)
++..+ .|+.+|..-...+.-.+++++|..=|++.++. .| +...|..+..+..+.++++++...|++..+ .++
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP 459 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFP 459 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCC
Confidence 87765 46678888888888888999999999999884 66 557788888888889999999999999654 677
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS---------TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
..+..|+.....+..++++++|.+.|+.. ...|+ +.+...++ .+...+++..|+.+++++.+++|....
T Consensus 460 ~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHH
Confidence 77888999999999999999999999887 34443 12222222 233458999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+|..|+..-.+.|+.++|+++|++..
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=4.1e-16 Score=142.78 Aligned_cols=257 Identities=13% Similarity=0.087 Sum_probs=113.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA-ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (580)
+...+.+.|++++|++++++......+|+...|.. +...+...++.+.|.+.++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 46677889999999999976554442455544444 445666789999999999999886533 56667777777 7889
Q ss_pred CHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 041384 383 SITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 383 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (580)
++++|.+++...-+ ++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999887644 466777888889999999999999999987643 234667788888899999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 460 VMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+++. .+.+......++..+...|+.+++.+++.... .+.|+..+..+..++...|+.++|+..++++...+|.|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 8762 22346778889999999999999888887773 2456678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
....+++++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887643
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=9.6e-14 Score=123.97 Aligned_cols=428 Identities=12% Similarity=0.093 Sum_probs=287.2
Q ss_pred hHHHHH---HHhhccCCcHHHHHHHHHHHHhCCCCCchH-HHhHHHHHhHhcCCHHHHHHHHhcCCC----CC----eeh
Q 041384 131 LLAGII---SLCSQIGELELGRQIHALVIVDGSFELSVF-VSTALLDLYSKCHHWLIALRVFEQMVI----RN----EVS 198 (580)
Q Consensus 131 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~ 198 (580)
||+.|. .-|....-..+|...++-+++.. .-|+.. .-..+.+.+.+...+.+|+++++.... -+ +..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 444444 34444555677888888888777 455544 334567788888999999998876522 12 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhH--------HH
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL--------SA 270 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~ 270 (580)
.+.+.-.+.+.|.+++|+..|+...+. .|+..+-..++-++...|+.++..+.|.+|......+|..- -.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444445677889999999999988775 68877777777777778999999999999886543332211 11
Q ss_pred HHHHHHHH---------cCC-----CHHHHHHHHhhCCCCChh---hH----------HH--------HHHHHHhCCChh
Q 041384 271 ALMHMYCE---------CTE-----ALHPARIIFERTKVKDVV---IW----------SS--------IIRGYSQSGDLS 315 (580)
Q Consensus 271 ~l~~~~~~---------~~~-----~~~~a~~~~~~~~~~~~~---~~----------~~--------l~~~~~~~~~~~ 315 (580)
.|+.--.+ ..+ ++-.+.++......|+-. -| .- -..-|.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 12221111 111 011112222222222211 01 00 123478899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhc
Q 041384 316 EAMKLFSRMRLERIEPNSVTLL--AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 316 ~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
.|.++++-..++.-+.-+..-+ +.+..+.-..++..|.++-+...... ..++.....-.+.....|++++|...+.+
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999999887664333332222 23333333456777777766655432 22222222222334457999999999999
Q ss_pred CCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh
Q 041384 394 MAARDFVSWTTLI---SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470 (580)
Q Consensus 394 ~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (580)
....|...-..|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+...|++++.++. .-++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCH
Confidence 9988776544443 3466789999999999887664 34567788888899999999999999988742 4566678
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVST-MP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
.++..|.+.|-+.|+-..|.+..-+ .. ++-+..+..-|..-|....-++.++..|+++.-..|.-...-..++.++-+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 8999999999999999999886544 34 455778887788888888888999999999988888777755566667778
Q ss_pred cCChHHHHHHHHHHHhC
Q 041384 549 SGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~ 565 (580)
.|+|.+|..+++...++
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999988764
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.3e-10 Score=104.93 Aligned_cols=462 Identities=11% Similarity=0.071 Sum_probs=327.5
Q ss_pred CCChhHHHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041384 60 DADPVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136 (580)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 136 (580)
..+...|-.....-...+++..|..+|+... ..+...|-.-+..=.++..+..|..++++....=...|. .|---+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 3556667666666677788999999998876 456667777777888888899999999988774222222 233333
Q ss_pred HHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcC--CCCCeehHHHHHHHHHhcCChhH
Q 041384 137 SLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM--VIRNEVSWTAMISGCIDSQNYDT 214 (580)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~ 214 (580)
..--..|+...|+++|+.-.. ..|+...|.+.++.=.+-+.++.|..++++. ..|++.+|--....-.+.|....
T Consensus 149 ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence 344566889999999988766 5789999999999989999999999999886 66888888888888888899888
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHcCCCHHHHHHH--
Q 041384 215 GIDLFRAMQRE-GV-KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD-HHLSAALMHMYCECTEALHPARII-- 289 (580)
Q Consensus 215 a~~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~-- 289 (580)
|..+|....+. |- .-+...+.+....-.+...++.|.-+++-.++.=+... ...|..+...=-+.|+ ....+..
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd-~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD-KEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc-hhhhHHHHh
Confidence 88888887664 10 11222333333333456678888888888877643322 3444444444444555 3333322
Q ss_pred ------HhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCChH
Q 041384 290 ------FERTKVK---DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-------TLLAILSSC---TRQSFLS 350 (580)
Q Consensus 290 ------~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~~~~ 350 (580)
++..... |-.+|-..++.-...|+.+...++|++.... ++|-.. .|..+=-+| ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1222222 4456666777777889999999999998865 344321 222222222 3478899
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHh----HhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 041384 351 HGLGVHCYIMKAGLNFDVSIGNALMNMY----SKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLE 424 (580)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (580)
.+.++++...+ -++....+|.-+--+| .++.++..|.+++..... |...+|...|..-.+.++++.+..++++
T Consensus 384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999888 3444555555443333 467899999999998775 6667888888888999999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 041384 425 MQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPST 502 (580)
Q Consensus 425 ~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 502 (580)
..+- .| |..++.-....=...|+.+.|..+|+-++...........|...|+--...|.++.|..+++++ ...+..
T Consensus 463 fle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 463 FLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 9985 55 6688888777777899999999999988775555555667788888888999999999999988 345566
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHh
Q 041384 503 RILSSLVSACR-----IHG-----------RLEVAEMLAHQLIE 530 (580)
Q Consensus 503 ~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~ 530 (580)
.+|-++..--. ..+ ....|..+|+++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 67766665443 233 56678888888764
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.1e-11 Score=109.74 Aligned_cols=327 Identities=11% Similarity=-0.001 Sum_probs=231.0
Q ss_pred CCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhH-HHHHHH
Q 041384 229 PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIW-SSIIRG 307 (580)
Q Consensus 229 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~ 307 (580)
-|...+-.....+.+.|..+.|...+...+..- +..|.+.+....-..+ .+.+..+....+..+...- -.+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~-~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITD-IEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhch-HHHHHHHHhcCcccchHHHHHHHHHH
Confidence 343333333334555666777776666554321 2222222222222222 3333333333322111111 123356
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHhHhcCCHH
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN--FDVSIGNALMNMYSKCGSIT 385 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 385 (580)
+....+.+++..-.......|++-+...-+....+.....++++|+.+|+++.+...- -|..+|..++-.--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 6666678888888888888887777766666677778899999999999999986321 25666666553322222222
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 041384 386 SSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEK 464 (580)
Q Consensus 386 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (580)
--....-.+.+--+.|..++.+-|.-.++.++|...|++..+. .|.. ..++.+..-|....+...|..-++.+++
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 1112222233335567777888888899999999999999985 5654 6777888889999999999999999775
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
-.+.|-..|-.|.++|.-.+...=|+-+|++. ..+| |+..|.+|...|.+.++.++|+..|+++...+..+..++..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 34456778999999999999999999999998 4555 889999999999999999999999999999998899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 041384 543 SMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
++.|-+.++.++|.+.+++.++
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988766
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=1.1e-09 Score=102.81 Aligned_cols=519 Identities=12% Similarity=0.083 Sum_probs=316.5
Q ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCC
Q 041384 30 LPSVIKACAYAQTHQHFGLQLHCTALKS-GSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNG 108 (580)
Q Consensus 30 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 108 (580)
+...++....++++ ......|+..+.. .++--..+|...+......|-++.+.++++...+-++..-+--|..+++.+
T Consensus 105 wl~Ylq~l~~Q~~i-T~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLI-TRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHhcchH-HHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44444444566666 6667777776654 233344577778887888888888888888877666667788888888899
Q ss_pred ChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHhhccCCcHHH---HHHHHHHHHhCCCCCch--HHHhHHHHHhHh
Q 041384 109 FYVRSLEMFREMYLCG------FVLKAELLAGIISLCSQIGELELG---RQIHALVIVDGSFELSV--FVSTALLDLYSK 177 (580)
Q Consensus 109 ~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 177 (580)
++++|.+.+....... -+.+...|.-+....++..+.-.. ..++..+.. .-+|. ..|++|.+-|.+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHHHHHH
Confidence 9998888887775431 233445566666665555443322 233333322 22343 478999999999
Q ss_pred cCCHHHHHHHHhcCCCC--CeehHHHHHHHHHh----------------cCC------hhHHHHHHHHHHHcCC-C----
Q 041384 178 CHHWLIALRVFEQMVIR--NEVSWTAMISGCID----------------SQN------YDTGIDLFRAMQREGV-K---- 228 (580)
Q Consensus 178 ~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~----------------~~~------~~~a~~~~~~m~~~~~-~---- 228 (580)
.|+++.|..+|++.... ++.-|..+.++|+. .++ ++-.+.-|+.+...+. -
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999887543 22233333333332 111 1222333444333210 0
Q ss_pred ------CCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc-C----CCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCC
Q 041384 229 ------PTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG-F----DFDHHLSAALMHMYCECTEALHPARIIFERTKVKD 297 (580)
Q Consensus 229 ------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 297 (580)
-+..++..-+ -...|+..+....+.++++.- + ..-...+..+...|-+.|+ ++.|+.+|++..+-+
T Consensus 341 lLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-LDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc-HHHHHHHHHHhhcCC
Confidence 0111121111 122455566666666666531 1 1123456778888888999 999999999887644
Q ss_pred hh-------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHhhccCChHHHH
Q 041384 298 VV-------IWSSIIRGYSQSGDLSEAMKLFSRMRLERIE----------P-------NSVTLLAILSSCTRQSFLSHGL 353 (580)
Q Consensus 298 ~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~ 353 (580)
-. +|..-...-.+..+++.|+.+++......-. | +...|+..++.-...|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 33 3444444455677888898888776432111 1 1223444455555678888889
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC----CCc-chHHHHHHHHHh---cCChHHHHHHHHHH
Q 041384 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA----RDF-VSWTTLISGYGF---HGYGEEALQLFLEM 425 (580)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~ 425 (580)
.+++.+.+..+.....+.| ....+-...-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++.
T Consensus 498 ~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999866543332222 23334556678999999997655 444 356666555543 23789999999999
Q ss_pred HHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 041384 426 QESGVEPDAITVLAILS--ACNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP 500 (580)
Q Consensus 426 ~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 500 (580)
.+ |.+|...-+..|+- .=.+.|-...|.++++++.. ++++. ...|+.+|.--+..=-+..-..+|++. ..-|
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 99 67775533332322 22346888999999998543 45444 556777776444332233334444444 2235
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCChHHHHHHH
Q 041384 501 STRILSSL---VSACRIHGRLEVAEMLAHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 501 ~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
+...-... ...-++.|..++|..++....+.-+| +...|...-..-.+.|+-+--.+.+
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 54443333 33346889999999999988887644 7777888888888999955555444
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=6.7e-12 Score=107.57 Aligned_cols=311 Identities=14% Similarity=0.127 Sum_probs=212.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHH
Q 041384 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288 (580)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 288 (580)
++++++|.++|-+|.+.+ +-+..+-.++.+.|.+.|..+.|.++++.+.++. |...-..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr----------------- 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQR----------------- 106 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHH-----------------
Confidence 567899999999998742 2234455677788888999999999988877642 1111000
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch
Q 041384 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368 (580)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 368 (580)
....-.|..-|...|-+|.|+.+|..+.+.+ .--......++..|-...+|++|+++-+.+.+.+..+..
T Consensus 107 ---------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 107 ---------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred ---------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 0112235566888899999999999888755 334456677788888888888888888777776544332
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcc
Q 041384 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI-TVLAILSACNHA 447 (580)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~ 447 (580)
. .+...| .-|...+....+.++|..++.+..+. .|+.. .-.++.+.....
T Consensus 177 ~---eIAqfy------------------------CELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 177 V---EIAQFY------------------------CELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAK 227 (389)
T ss_pred h---HHHHHH------------------------HHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhc
Confidence 1 122222 23444455566777888888887764 44443 333456677788
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
|+++.|++.++.+.+ .+..--..+...|..+|...|+.++...++.++ ...+.......+...-....-.+.|...+.
T Consensus 228 g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 228 GDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred cchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 888888888888554 554455667788888888888888888888776 345666666666666556666778888888
Q ss_pred HHHhcCCCCchHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCccCCceeEEEeCC
Q 041384 527 QLIEAEPENAANYTLLSMVCSE--SGNWLGAEEVWRVMRAKGLSKSYGFSRIENEY 580 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (580)
+-+...|.-...+..+-.-... .|...+....++.|....++..|.+.+-.+||
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF 362 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGF 362 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCC
Confidence 8788777666545444333322 35678888889999999999999999888887
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=6e-12 Score=120.63 Aligned_cols=250 Identities=13% Similarity=0.038 Sum_probs=182.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL--AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (580)
..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.+.++.+.+.. +-++.....+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 34446778888888888888755 45543332 33556677888888888888887765 445677777888888888
Q ss_pred CHHHHHHHHhcCCCCCcc-----------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 041384 383 SITSSHQIFNEMAARDFV-----------SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451 (580)
Q Consensus 383 ~~~~A~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 451 (580)
++++|.+++..+.+.... .|..++.......+.+...++++.+.+. .+.++.....+...+...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 888888888877753221 2333333334445556666667666543 3447778888899999999999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
+|.+++++.++ .+|+.... ++.+....++.+++.+..++. +..| |+..+..+...|.+.+++++|.+.|+++.
T Consensus 281 ~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998665 34454322 333444568999999999888 3345 55678899999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 530 EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 530 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+..|++.. +..++.++.+.|+.++|.+++++-..
T Consensus 356 ~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99887665 77899999999999999999988654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=6.6e-12 Score=120.34 Aligned_cols=218 Identities=12% Similarity=0.022 Sum_probs=138.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHhHh
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV-------SIGNALMNMYSK 380 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 380 (580)
+...|+++.|...++++.+.. +-+...+..+...+...|+++++.+++..+.+.+..++. ..|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444332 223334444444444445555555555544443322211 122233333334
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 381 CGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
..+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. +||.... ++.+....++.+++.+..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 4456666667776654 36667777888888888888888888888773 5555322 233334568888888888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
+...+ ..+-|...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++....-
T Consensus 318 e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 318 RQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88664 34445566778888888899999999988887 467888888888888999999999999988887643
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=9e-10 Score=99.64 Aligned_cols=459 Identities=9% Similarity=0.021 Sum_probs=326.1
Q ss_pred ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHH
Q 041384 94 TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173 (580)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (580)
...|-.-.+-=..++++..|..+|++..... .-+...|..-+..-.+...+..|+.+++.++..- |.-...|-..+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHH
Confidence 3344444444455778899999999998765 3356667777777788899999999999998863 444455666666
Q ss_pred HhHhcCCHHHHHHHHhcC--CCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHH
Q 041384 174 LYSKCHHWLIALRVFEQM--VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251 (580)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 251 (580)
+=-..|++..|.++|++. -+|+..+|++.|+.-.+-+.++.|..++++..- +.|+..+|.--...-.+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 666789999999999987 457999999999999999999999999999876 4699999998888888999999999
Q ss_pred HHHHHHHHh-cC-CCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC----CC-ChhhHHHHHHHHHhCCChhHHHHH----
Q 041384 252 AIHGYAYCC-GF-DFDHHLSAALMHMYCECTEALHPARIIFERTK----VK-DVVIWSSIIRGYSQSGDLSEAMKL---- 320 (580)
Q Consensus 252 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~---- 320 (580)
.++..+.+. |- ......+.++...=.++.+ .+.++.++.-.. .. ....|..+...--+-|+-....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE-~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKE-YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999988763 21 1122333333333334555 677777665332 22 133444444444445554433332
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch-hHHHHHH-----HHh---HhcCCHHHH
Q 041384 321 ----FSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV-SIGNALM-----NMY---SKCGSITSS 387 (580)
Q Consensus 321 ----~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~-----~~~---~~~g~~~~A 387 (580)
++.+...+ +-|-.++--.+..-...|+.+...++++..+..-.+.+. ..|...| -++ ....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444443 556677777777778889999999999988865322221 1111111 111 346788899
Q ss_pred HHHHhcCCC---CCcchH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 041384 388 HQIFNEMAA---RDFVSW----TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460 (580)
Q Consensus 388 ~~~~~~~~~---~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (580)
.++|+...+ ....|| -....-..++.+...|.+++...+ |.-|-..+|...|..=.+.+.++....++++.
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999887665 233343 334444567788999999988766 46898999999999888999999999999997
Q ss_pred HHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
++ -.+-+..+|......-...|+.+.|..+|+-...+|. ...|.+.|.--...|.++.|..+++++++..+...
T Consensus 464 le--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 65 2344577888888888899999999999998865653 34677777777889999999999999999886655
Q ss_pred hHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHh
Q 041384 537 ANYTLLSMVCS-----ESG-----------NWLGAEEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 564 (580)
+|.+.+..-. ..| ....|..+|++...
T Consensus 542 -vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 -VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred -HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5777666444 344 56678888877643
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=3.5e-11 Score=116.05 Aligned_cols=284 Identities=11% Similarity=-0.015 Sum_probs=140.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHH
Q 041384 208 DSQNYDTGIDLFRAMQREGVKPTR-VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286 (580)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 286 (580)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+...+....+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------------------- 152 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------------------- 152 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---------------------
Confidence 467777777777665554 3432 3333444556666777777777666544321111
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC
Q 041384 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366 (580)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 366 (580)
....-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+
T Consensus 153 -----------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 153 -----------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred -----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 1111223455666777777777777777664 3345566677777777777777777777777765433
Q ss_pred chhHHHHHHHHh---H----hcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 041384 367 DVSIGNALMNMY---S----KCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAIT 436 (580)
Q Consensus 367 ~~~~~~~l~~~~---~----~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 436 (580)
.......-..++ . .....+.....++...+ +++..+..+...+...|+.++|.+++++..+. .||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~ 298 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence 222111111111 1 11112222233333322 13344444444444444444444444444442 222211
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CH--HHHHHHHHHH
Q 041384 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-ST--RILSSLVSAC 512 (580)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~ 512 (580)
..............++.+.+.+.+++. +..| |+ ....++.+.+
T Consensus 299 ---------------------------------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 299 ---------------------------------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred ---------------------------------chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 000011111112234444445544444 2223 22 3445566666
Q ss_pred HhcCCHHHHHHHHH--HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 513 RIHGRLEVAEMLAH--QLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 513 ~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.+.|++++|.+.|+ ...+..|++.. +..++..+.+.|+.++|.+++++.
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666 34444444333 446666666666666666666654
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=7.6e-12 Score=121.14 Aligned_cols=437 Identities=10% Similarity=0.004 Sum_probs=245.5
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC
Q 041384 115 EMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR 194 (580)
Q Consensus 115 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (580)
.++-.+...|+.|+..||..+|..||..|+.+.|- +|..|.-.. .+....+++.++.+..+.++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-------CC
Confidence 45566677778888888888888888888887777 777776666 6677777777777777777766655 56
Q ss_pred CeehHHHHHHHHHhcCChhH---HHHHHHHH----HHcCCCCCHHHHHHHHHHHhcCC-Cchh------HHHHHHHHHHh
Q 041384 195 NEVSWTAMISGCIDSQNYDT---GIDLFRAM----QREGVKPTRVTLTIVLLACAELR-DLRN------GKAIHGYAYCC 260 (580)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~-~~~~------a~~~~~~~~~~ 260 (580)
...+|..|..+|...|+... +.+.+... ...|+......+-..+.++-..- +... -+.++...++.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888877777544 22211111 11232222222222222211110 0000 11222333332
Q ss_pred cC-CCchh---HHHHHHHHHHHcCCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 041384 261 GF-DFDHH---LSAALMHMYCECTEALHPARIIFERTKV-KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT 335 (580)
Q Consensus 261 ~~-~~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 335 (580)
+. .|... .+..+++-.......++....+...... +++.+|.+++++-..+|+.+.|..++.+|.+.|++.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 21 11111 1111233333333335555555555554 8999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH-----------hcCCCC-------
Q 041384 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIF-----------NEMAAR------- 397 (580)
Q Consensus 336 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-----------~~~~~~------- 397 (580)
|..++-+ .++...+..++.-|...|+.|+..|+...+-.+...|....+.... ..+...
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8888766 8888889999999999999999999887766665544322211111 011000
Q ss_pred ----------------------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHhccC----
Q 041384 398 ----------------------DFVSWTTLISGYGFHGYGEEALQLFLEMQESG--VEP-DAITVLAILSACNHAG---- 448 (580)
Q Consensus 398 ----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~p-~~~~~~~l~~~~~~~~---- 448 (580)
...+|.. ..-....|+-++..++...|...- +.| +...|..++.-|.+.-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 0011211 111222455555555555554221 122 1233433333332211
Q ss_pred ------------------CHHHHHHHHHHHHH---------------hhCCCC-------ChhHHHHHHHHhhhcCChHH
Q 041384 449 ------------------LVKEAETLFNNVMK---------------EKKIAL-------AIEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 449 ------------------~~~~a~~~~~~~~~---------------~~~~~~-------~~~~~~~l~~~~~~~g~~~~ 488 (580)
...+..+......+ .+.+.| -...-+.++..+++.-+..+
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111000 000000 01112233334444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP---ENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 489 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
++..-++.....=...|..|++-+..++..+.|..+.++....+. -+-.-+..+.+.+.+.+....+.++++++.+
T Consensus 478 ~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 478 ILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 443322221111125678888888999999999998888876652 2555588889999999999999999998877
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.7e-10 Score=105.38 Aligned_cols=265 Identities=12% Similarity=0.030 Sum_probs=212.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=..+++.- +..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44445555566778899999999999988765 5666666666778888888887777777777653 556788888888
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 453 (580)
.|.-.|+..+|++.|.+...-|. ..|-.+...|.-.+..+.|+..+...-+. ++-....+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 88888999999999998776443 47999999999999999999999888764 222333444555568889999999
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 041384 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--------MK-PSTRILSSLVSACRIHGRLEVAEML 524 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-p~~~~~~~l~~~~~~~~~~~~A~~~ 524 (580)
.++|.+++. -.+.|+..++.+.-.....+.+.+|..+|+... .. ....+++.|..+|++.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998653 233456677778777788899999999998762 11 2456789999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+++++...|.++.++..++-+|...|+++.|++.|.+.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999876543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.2e-12 Score=119.53 Aligned_cols=277 Identities=15% Similarity=0.023 Sum_probs=216.1
Q ss_pred HHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 041384 283 LHPARIIFERTKV--K-DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHC 357 (580)
Q Consensus 283 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 357 (580)
.+.|...|...+. + ...+...+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+..+-+ +-++.++.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4556666666432 2 23345566789999999999999999998663 12366788888776533 22223333
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041384 358 YIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434 (580)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 434 (580)
+-.-..-+-.+.+|.++.++|.-.++.+.|.+.|++..+-|+ .+|+.+..=+.....+|.|...|+.... +.|..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 222222366789999999999999999999999999887444 5777777778888899999999998876 34533
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHH
Q 041384 435 -ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTMP-MK-PSTRILSSLVS 510 (580)
Q Consensus 435 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~ 510 (580)
..|-.+...|.++++++.|+-.|+++++ +.|. ......+...+.+.|+.++|+.+++++. .. .|+..-...+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 5666778889999999999999998654 5555 5556677888999999999999999983 34 46666677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
.+...++.++|+..++++.+.-|++..+|..++.+|.+.|+.+.|+.-|.-+.+..++
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 8888999999999999999999999999999999999999999999999888776544
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=4.9e-11 Score=115.09 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=182.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 041384 309 SQSGDLSEAMKLFSRMRLERIEPNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 309 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 387 (580)
...|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578999999999887655 45543 34445667778899999999999887654333333444457788889999999
Q ss_pred HHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHH---HHhccCCHHHHHHHHHHH
Q 041384 388 HQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL-AILS---ACNHAGLVKEAETLFNNV 460 (580)
Q Consensus 388 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~ 460 (580)
...++.+.+. +...+..+...+...|++++|.+.+..+.+.+..+ ...+. .-.. .....+..+.+...+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988763 55678888999999999999999999999986443 33221 1111 113333333333444443
Q ss_pred HHhh--CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 461 MKEK--KIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRI---LSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 461 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
.+.. ..+.+...+..++..+...|+.++|.+++++. ...|+... ...........++.+.+.+.+++..+..|+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 3211 12247788889999999999999999999988 34565542 122222334568889999999999999999
Q ss_pred Cc--hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 535 NA--ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 535 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|+ .....+++.+.+.|++++|.++|++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 99 8899999999999999999999995333
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=7.1e-14 Score=127.98 Aligned_cols=227 Identities=16% Similarity=0.124 Sum_probs=105.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcC
Q 041384 338 AILSSCTRQSFLSHGLGVHCYIMKAG-LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHG 413 (580)
Q Consensus 338 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 413 (580)
.+...+...|++++|++++....... .+.++..|..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55777889999999999997665544 3456666677777788899999999999999874 34466677776 6889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041384 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493 (580)
Q Consensus 414 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (580)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887765 466777788888899999999999999996654555677888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 494 STM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 494 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
++. ...| |......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|..++++..+...
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 998 4456 5778899999999999999999999999999999999999999999999999999999999887543
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.9e-12 Score=120.62 Aligned_cols=246 Identities=13% Similarity=0.092 Sum_probs=197.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhHhcCCHHHHHHH
Q 041384 313 DLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG--LNFDVSIGNALMNMYSKCGSITSSHQI 390 (580)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 390 (580)
+..+|...|.++... +.-+......+..+|...++++++.++|+.+.+.. ..-+..+|.+.+--+-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999885544 23344677788899999999999999999998743 223667777766544332222221222
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 391 FNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 391 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
+-......+.+|.++..+|.-+++.+.|++.|++... +.| ...+|+.+..-+.....+|.|...|+.++. .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 2223335778999999999999999999999999998 467 668999999999999999999999998654 44
Q ss_pred hhHH---HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 470 IEHY---ACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 470 ~~~~---~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
+..| .-+.-.|.++++++.|+-.|+++ .+.| +......+...+.+.|+.++|+++++++..++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4444 45677899999999999999998 4566 66677888888999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 041384 545 VCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+...+++++|.+.++++.+.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999987643
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=1.6e-08 Score=95.34 Aligned_cols=505 Identities=14% Similarity=0.139 Sum_probs=302.4
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchH
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (580)
.++|+.....+.|...+..--+.-+...+...++.....+-+ +.+.+++++.++. ++..-+-.|..++..+++++
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHH
Confidence 456777777788855566666666777888888888888877 8899999988754 34446777888999999999
Q ss_pred HHHhhccCCCC----------CccchHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCC--HhhHHHHHHHhhccCCcH
Q 041384 82 AYQLFDEMPYR----------DTISWNSIINCFTQNGFYVR---SLEMFREMYLCGFVLK--AELLAGIISLCSQIGELE 146 (580)
Q Consensus 82 A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~ 146 (580)
|.+.+..+... +-..|..+-...+++-+.-. ...+++.+..+ -+| ...|++|.+-|.+.|+++
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhH
Confidence 99999877522 23344444444444332221 22233333221 122 235666667777777777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHHHHhHhc----------------C------CHHHHHHHHhcCCCC----------
Q 041384 147 LGRQIHALVIVDGSFELSVFVSTALLDLYSKC----------------H------HWLIALRVFEQMVIR---------- 194 (580)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~---------- 194 (580)
.|..++++.+..- ..+.-++.+-+.|+.- + +++-...-|+.+...
T Consensus 266 karDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 266 KARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777777665542 2222222222222211 1 122222333333111
Q ss_pred -----CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 041384 195 -----NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT------RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263 (580)
Q Consensus 195 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (580)
++..|..-+. +..|+..+-...+.+..+. +.|. ...+..+.+.|-..|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 2333333222 2356667777777777664 3332 234667777888889999999999888776554
Q ss_pred Cc---hhHHHHHHHHHHHcCCCHHHHHHHHhhCCC-C--------------------ChhhHHHHHHHHHhCCChhHHHH
Q 041384 264 FD---HHLSAALMHMYCECTEALHPARIIFERTKV-K--------------------DVVIWSSIIRGYSQSGDLSEAMK 319 (580)
Q Consensus 264 ~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~ 319 (580)
.- ..+|-....+=.+..+ .+.|.++.+.... | +...|...++..-..|-++....
T Consensus 420 ~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 32 2333333333344455 6677766654331 1 33456666776667788889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhHh---cCCHHHHHHHHhcCC
Q 041384 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD-VSIGNALMNMYSK---CGSITSSHQIFNEMA 395 (580)
Q Consensus 320 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 395 (580)
+|+++.+..+.. +........-+....-++++.++++.-+..=..|+ -.+|+..+.-+.+ ..+++.|..+|++..
T Consensus 499 vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 499 VYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999998776432 22222222223344557777777766555333343 3456665555543 346899999999888
Q ss_pred CCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 041384 396 ARDFV-----SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468 (580)
Q Consensus 396 ~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 468 (580)
+.-+. .|-.....--+.|-...|+.++++.... +.+.. ..|++.|.--...=.+.....+|+++++. -|
T Consensus 578 ~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp 653 (835)
T KOG2047|consen 578 DGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LP 653 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CC
Confidence 73222 1222222223457788899999997664 55543 56888777555544556667888887764 34
Q ss_pred Chh---HHHHHHHHhhhcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041384 469 AIE---HYACYVDLLGKSGKIEDACKVVSTMP--MKP--STRILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 469 ~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
+.. .--.+.+.-++.|..+.|..++.... .+| +...|.+.-.--.++|+-+.-.+++
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 433 33345566678999999999998763 344 5667888888888999954444333
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.4e-09 Score=98.82 Aligned_cols=221 Identities=10% Similarity=-0.023 Sum_probs=172.0
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 387 (580)
+.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++....|....+.+ +-++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34568888899999998877544433 26677778899999999999999998866 44666777777788888999999
Q ss_pred HHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 041384 388 HQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464 (580)
Q Consensus 388 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (580)
..=|++..+- +...|-.+.-+.-+.+++++++..|++.++. ++--+..|+.....+..+++++.|.+.|+..++-.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999988774 4456666666777888999999999999987 44456899999999999999999999999977622
Q ss_pred CC------CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 465 KI------ALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 465 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
.. .+.+.+-..++..-. .+++..|+.++++. +..| ....+..|...-.+.|+.++|+++|++...+-
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 122222233333333 38999999999988 4555 56789999999999999999999999987654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=5.2e-10 Score=99.34 Aligned_cols=283 Identities=14% Similarity=0.054 Sum_probs=167.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHH
Q 041384 209 SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARI 288 (580)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 288 (580)
.|++.+|..+..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++-+....++..+.-...
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra--------------- 160 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA--------------- 160 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH---------------
Confidence 566666666666655554332 3344445555566666666666665555443233322222222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc-
Q 041384 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD- 367 (580)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 367 (580)
......|+++.|..-+.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+
T Consensus 161 -----------------rlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 161 -----------------RLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred -----------------HHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 33333444444444444444332 22233344444444444444444444444444433222
Q ss_pred ------hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041384 368 ------VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVL 438 (580)
Q Consensus 368 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 438 (580)
..+|..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+ .
T Consensus 223 e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L 298 (400)
T COG3071 223 EAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----L 298 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----H
Confidence 22344444444444444555556666654 3566667777777888888888888888887766665 2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGR 517 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~ 517 (580)
...-.+.+.++.+.-++..++.++..+..| ..+..|...|.+.+.|.+|...|+.. ...|+..+|+-+..++.+.|+
T Consensus 299 ~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 299 CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 222345677787777777777666555555 56777888888888888888888766 567888888888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 041384 518 LEVAEMLAHQLIEA 531 (580)
Q Consensus 518 ~~~A~~~~~~~~~~ 531 (580)
...|.++.++....
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888777643
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=3.9e-11 Score=107.48 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=154.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44555566667777777777777776544 234566777788888888999999988888753 33556777788888
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
...|++++|.+.+++++.....+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999997753333334556777888899999999999999887 2333 5667888899999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..++++.+..|.++..+..++..+...|+.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999998887653
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.2e-09 Score=95.25 Aligned_cols=282 Identities=12% Similarity=0.112 Sum_probs=155.4
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCC
Q 041384 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK------DVVIWSSIIRGYSQSGD 313 (580)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 313 (580)
++....+.+++.+-.......|++.+...-+....+.....+ ++.|..+|+.+... |..+|+.++- +++.+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD-fD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD-FDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 333344455555555555555555444444444444444444 55555555555433 2334444432 22221
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhc
Q 041384 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 314 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
.. +.++..-.-.--+--+.|..++.+-|+-.++.++|..+|+...+.+ +-....|+.+.+-|....+...|.+-++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1122111111112233455555566666666777777777666654 33455666666777777777777777776
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 394 MAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 394 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
..+ .|-..|..|.++|.-.+.+.-|+-.|++.... +| |+..+..|..+|.+.++.++|++.|..++. .-..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccc
Confidence 554 35556677777777777777777777777663 45 556677777777777777777777777554 22234
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTMP--------MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
...+..|.+.|.+.++.++|...|.+.. ..| .......|..-+.+.+++++|.........-
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 4566777777777777777766665441 122 1112222444455666666666655555444
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-09 Score=100.52 Aligned_cols=495 Identities=12% Similarity=0.006 Sum_probs=304.5
Q ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhcc--CCCCCccchHHHHHHHHhC
Q 041384 30 LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE--MPYRDTISWNSIINCFTQN 107 (580)
Q Consensus 30 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~ 107 (580)
+..+++-+.....+ ..|.-+-+.....+ .|+..--.+.+.+.-.|+++.|..+... +...|..+.......+.+.
T Consensus 19 ~~~~~r~~l~q~~y-~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 19 YRRLVRDALMQHRY-KTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 44445545555555 55665555555544 4444445577778888888888887764 3467888888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHH
Q 041384 108 GFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRV 187 (580)
Q Consensus 108 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (580)
.+++.|+.++..-. +.-++..|-.-=. ...=+.+.+.+ .+........+-.-...|.....+++|...
T Consensus 96 k~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~-------~~~~~~essic~lRgk~y~al~n~~~ar~~ 163 (611)
T KOG1173|consen 96 KEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGE-------DLMINLESSICYLRGKVYVALDNREEARDK 163 (611)
T ss_pred HHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccc-------cccccchhceeeeeeehhhhhccHHHHHHH
Confidence 99999988887321 0001111100000 00000000000 000111111111222334445566777777
Q ss_pred HhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 041384 188 FEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG----VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFD 263 (580)
Q Consensus 188 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (580)
|.+....|...|..+...-.. ..-.+.+.+..+...+ .+-+......+.....-...-+.....-....-.+..
T Consensus 164 Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 164 YKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred HHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 766655555544443321111 1111212222222111 0112222222222110000000000000001112233
Q ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041384 264 FDHHLSAALMHMYCECTEALHPARIIFERTKVK---DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340 (580)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 340 (580)
.+..+...-.+.+....+ +....++++...+. +...+..-|.++...|+..+-..+=.++.+.- +-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~-f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCR-FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcCh-HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 445555555566666666 77777777766543 44456666778889999888888888888663 44556888888
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHH
Q 041384 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-DFVSWTTLISGYGFHGYGEE 417 (580)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 417 (580)
--|...|..++|.++|.+....... -...|-.+.+.|.-.|+-+.|...+....+ + .-..+--+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 8888889999999999987754422 245678888999999999999988876654 2 22233335556788999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-----CCCChhHHHHHHHHhhhcCChHHHHH
Q 041384 418 ALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKK-----IALAIEHYACYVDLLGKSGKIEDACK 491 (580)
Q Consensus 418 a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (580)
|.+.|.+... +-| |+..++-+.-.....+.+.+|..+|+..+.... ......+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 456 677788887777888999999999998763111 11235568899999999999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 492 VVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 492 ~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.+++.- .+.+..++.++.-.|...|+++.|...|.+++-+.|+|..+-..|..+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999882 4568899999999999999999999999999999999988766666544
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.9e-09 Score=93.99 Aligned_cols=177 Identities=10% Similarity=0.085 Sum_probs=79.9
Q ss_pred hhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHH
Q 041384 37 CAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRS 113 (580)
Q Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 113 (580)
+...+|+ ..|..+++.-...+-+-...+-..+...+-+.|++++|...+..+. .++...+-.|.-.+.-.|.+.+|
T Consensus 32 fls~rDy-tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDY-TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccc-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 3344555 5555555544433322222222233344455666666666665543 22333344444444444555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC
Q 041384 114 LEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193 (580)
Q Consensus 114 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (580)
..+-....+ ++-.-..++...-+.++-++-..+.+.+.+ ...-..+|.......-++.+|+.++.++..
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554433211 222223333344445555444444444322 112233444444444556666666666533
Q ss_pred C--CeehHHHH-HHHHHhcCChhHHHHHHHHHHHc
Q 041384 194 R--NEVSWTAM-ISGCIDSQNYDTGIDLFRAMQRE 225 (580)
Q Consensus 194 ~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~ 225 (580)
. +-...|.. .-+|.+..-++-+.++++-....
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 2 22333332 23455556666666666555543
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=1.6e-09 Score=96.28 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=201.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (580)
..|-.-+.+-.+.|+.+.+-.++.+..+.--.++...+-+........|+.+.|..-+.++.+.+ +-++.......++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 34555556777889999999999998876445666677777888899999999999999999876 44567778899999
Q ss_pred HhcCCHHHHHHHHhcCCCCCc-----------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 041384 379 SKCGSITSSHQIFNEMAARDF-----------VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447 (580)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 447 (580)
.+.|++.....++..+.+... .+|+.++.-....+..+.-...|+..... .+-++..-..++.-+...
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 999999999999999987422 36777777777666666666677776554 455677777888889999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM--PMKPSTRILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
|+.++|.++.++.++ ++..|+. ..++ ...+-++...-++..++. ..+.++..+.+|...|.+.+.+.+|...|
T Consensus 277 ~~~~~A~~~i~~~Lk-~~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALK-RQWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHH-hccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999887 5666652 2222 234566666555555544 12335578899999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+.+.+..|... .|..++.++.+.|+.++|.+..++....
T Consensus 352 eaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 98888887554 4999999999999999999999887644
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.3e-09 Score=92.40 Aligned_cols=288 Identities=13% Similarity=0.122 Sum_probs=152.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCch--HHHhHHHHHhHhcCCHHHH
Q 041384 107 NGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSV--FVSTALLDLYSKCHHWLIA 184 (580)
Q Consensus 107 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 184 (580)
+++.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|+.+++.+.++...+.+. ...-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456778888888887642 2233444556667777777777777777776654222222 1233445555666666666
Q ss_pred HHHHhcCCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 041384 185 LRVFEQMVIRN---EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261 (580)
Q Consensus 185 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (580)
+.+|..+.+.. ..+...|+..|-...++++|+++-.++.+.+-.+... -|
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eI----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EI----------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HH-----------------------
Confidence 66666554422 2234445555656666666666655555543222111 00
Q ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 041384 262 FDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-TLLAIL 340 (580)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 340 (580)
. ..|.-+...+....+.+.|..++.+..+.+ |+.+ .--.+.
T Consensus 180 -----------A-------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG 221 (389)
T COG2956 180 -----------A-------------------------QFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILG 221 (389)
T ss_pred -----------H-------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhh
Confidence 0 112333444444555666666666655442 2222 112233
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHH
Q 041384 341 SSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 418 (580)
+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+ ++...-..+...-....-.+.|
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~A 301 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAA 301 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHH
Confidence 44455566666666666666555444555556666666666666666666555544 2333333343333344445556
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHH
Q 041384 419 LQLFLEMQESGVEPDAITVLAILSACNH---AGLVKEAETLFNNVMK 462 (580)
Q Consensus 419 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 462 (580)
...+.+-... +|+...+..++..... .|...+-+..+.+|+.
T Consensus 302 q~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 302 QAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5555555443 6777777777776543 3345555555555443
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.6e-08 Score=93.01 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=148.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HhhccCC-hH-HHHHHHHHH-----------HHhCCCC
Q 041384 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILS---SCTRQSF-LS-HGLGVHCYI-----------MKAGLNF 366 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~-~~-~a~~~~~~~-----------~~~~~~~ 366 (580)
.|.-.+...|+.++|..++....... .+|......... +...-.+ ++ .++..++.. ......-
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556778899999999999998876 445433222222 1111111 11 111111111 1111011
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC-cchHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARD-FVSWTTLISGYGF--HGYGEEALQLFLEMQESGVEPDA--ITVLAIL 441 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~--~~~~~l~ 441 (580)
....-+.++..|. +..+.+.++-..+.... ...+..++....+ ......+.+++...-+. .|.. ......+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHH
Confidence 1111233344333 55667777777666543 3344455444322 23467788888777665 4544 4455556
Q ss_pred HHHhccCCHHHHHHHHH--------HHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHH
Q 041384 442 SACNHAGLVKEAETLFN--------NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-----MKPSTRILSSL 508 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l 508 (580)
......|+++.|.+++. . +.+.+..| .+...+...+.+.++.+.|..++.+.. ..+.......+
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss-~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSS-ILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhh-hhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 66788999999999999 4 22244444 445667778888887776766666551 22333333333
Q ss_pred ----HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 509 ----VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 509 ----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
...-.+.|+-++|..+++++.+.+|++..+...++.+|++ =+.+.|..+-+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~-~d~eka~~l~k 515 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR-LDPEKAESLSK 515 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh-cCHHHHHHHhh
Confidence 3334577999999999999999999999999999998865 46667766544
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=7.5e-10 Score=105.65 Aligned_cols=255 Identities=18% Similarity=0.164 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChh-hHHHHHHHHH
Q 041384 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVV-IWSSIIRGYS 309 (580)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~ 309 (580)
..+...+...|...|+++.|..+++..++. ..+.+. ...+.+. ..+.+...|.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------------------------l~k~~G-~~hl~va~~l~~~a~~y~ 252 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------------------------LEKTSG-LKHLVVASMLNILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------------------------HHHccC-ccCHHHHHHHHHHHHHHH
Confidence 345555777788888888888887776543 101000 0011111 1223445566
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 041384 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389 (580)
Q Consensus 310 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 389 (580)
..+++++|..+|+++..- ++.......+.-..+++.|..+|.+.|++++|..
T Consensus 253 ~~~k~~eAv~ly~~AL~i----------------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTI----------------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE 304 (508)
T ss_pred HhccHHHHHHHHHHHHHH----------------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH
Confidence 666666666666665321 0000001111123344556666777777777766
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhC--C
Q 041384 390 IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKK--I 466 (580)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 466 (580)
.+ +.|++++++..-. ..|.. ..++.+...|...+++++|..+++..++-.. +
T Consensus 305 ~~------------------------e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 305 YC------------------------ERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HH------------------------HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 65 4455555552111 12222 3355566667778888888888877655332 2
Q ss_pred CCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 041384 467 ALA----IEHYACYVDLLGKSGKIEDACKVVSTMP-------M--KPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEA- 531 (580)
Q Consensus 467 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 531 (580)
.++ ..+++.|...|...|++++|.++++++. . .+. ...++.|..+|.+.++..+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4567788888888888888888888761 1 122 346788888998889998898888887643
Q ss_pred ---CC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 532 ---EP---ENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 532 ---~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+| +...+|..|+.+|-..|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34 4455689999999999999999999887753
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=1e-08 Score=96.79 Aligned_cols=436 Identities=12% Similarity=0.046 Sum_probs=241.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHH
Q 041384 106 QNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185 (580)
Q Consensus 106 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (580)
..+++...+.+.+.+.+. ..-...|....--.+...|+.++|.......++.. ..+...|..+.-.+....++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHH
Confidence 456777777777777663 33344555554455667788888888888777754 667778888888888888899999
Q ss_pred HHHhcCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 041384 186 RVFEQMV---IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT-RVTLTIVLLACAELRDLRNGKAIHGYAYCCG 261 (580)
Q Consensus 186 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (580)
+.|+... +.|...|.-+.-.-++.|+++...+.-..+.+. .|+ ...|.....++--.|+...|..+++...+..
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988763 335666666655556777888777777776654 333 4456666667777788888888888877655
Q ss_pred C-CCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 041384 262 F-DFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL-LAI 339 (580)
Q Consensus 262 ~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l 339 (580)
. .|+...+......+.+. ......|..+.|++.+..-... ..|...+ .+-
T Consensus 174 ~~~~s~~~~e~se~~Ly~n--------------------------~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~k 225 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQN--------------------------QILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETK 225 (700)
T ss_pred ccCCCHHHHHHHHHHHHHH--------------------------HHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhH
Confidence 2 44444443332222211 1122333334443333322211 1111111 111
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHhHhcCCHHHHH-HHHhcCCCC---CcchHHHHHHHHHhcCC
Q 041384 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSI-GNALMNMYSKCGSITSSH-QIFNEMAAR---DFVSWTTLISGYGFHGY 414 (580)
Q Consensus 340 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~l~~~~~~~~~ 414 (580)
...+.+.+++++|..++..+.... ||..- |..+..++.+-.+.-++. .+|....+. ....-..=+.......-
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 222334444444444444444332 22222 222222222222222222 333333321 00000000000111112
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH---HHHhhC----------CCCChh--HHHHHHHH
Q 041384 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN---VMKEKK----------IALAIE--HYACYVDL 479 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~----------~~~~~~--~~~~l~~~ 479 (580)
.+..-.++..+.+.|+++--..+.++ |-.....+-..++... .+...| -+|+.. ++..++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 23334455666666655432222222 2221111111111111 011110 134433 34456778
Q ss_pred hhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 041384 480 LGKSGKIEDACKVVSTM-PMKPST-RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
+-+.|+++.|..+++.. ...|+. ..|..-.+.+...|++++|...++++.+++-.|..+-..-+....+.++.++|.+
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 88899999999999887 345544 3556666778889999999999999999998888877788888889999999999
Q ss_pred HHHHHHhCCCc-----cCCceeEEEeC
Q 041384 558 VWRVMRAKGLS-----KSYGFSRIENE 579 (580)
Q Consensus 558 ~~~~~~~~~~~-----~~~~~~~~~~~ 579 (580)
+...+.+.|.. .+-.++|.+++
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 99988887742 33446676553
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1e-07 Score=85.12 Aligned_cols=296 Identities=10% Similarity=0.023 Sum_probs=192.6
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHH
Q 041384 209 SQNYDTGIDLFRAMQREG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPAR 287 (580)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 287 (580)
.++-..|...+-.+.... ++-+......+.+.+...|+.+++...|++....++. ...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--~i~------------------- 267 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD--NVE------------------- 267 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh--hhh-------------------
Confidence 444444444444444333 3334444556666666677766666666655433211 000
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc
Q 041384 288 IIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367 (580)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 367 (580)
....|.. .+.+.|+.++...+...+.... .-....|-.-.......++++.|+.+-++.++.. +-+
T Consensus 268 ---------~MD~Ya~---LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 268 ---------AMDLYAV---LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred ---------hHHHHHH---HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 0011222 2345566666666666554322 1112222222333345667777777777666543 223
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL-SA 443 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~-~~ 443 (580)
...+-.-..++...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|.-+-+..... ++.+..+.+.+. ..
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 34444444567778889998888886553 36789999999999999999999888777664 445666766663 34
Q ss_pred Hhc-cCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 041384 444 CNH-AGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 444 ~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
|.- ..--++|.+++++.++ +.|+ ....+.+...+...|+.++++.++++. ...||....+.|.+.+...+.+++
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH
Confidence 433 3345788888888554 5565 556778888999999999999999887 577999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHH
Q 041384 521 AEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
|.+.|..+++++|.|..+...+-
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHH
Confidence 99999999999999887665553
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.2e-12 Score=80.41 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=47.1
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 194 RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243 (580)
Q Consensus 194 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (580)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999999875
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=5.9e-08 Score=93.64 Aligned_cols=399 Identities=16% Similarity=0.135 Sum_probs=253.0
Q ss_pred CCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHH
Q 041384 161 FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR---NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT-LTI 236 (580)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ 236 (580)
+.-|..+|..|.-+..++|+++.+.+.|++...- ....|+.+...+...|.-..|+.+++.-....-.|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 5668888888888999999999999999987443 455788888899999999999999987665433354333 433
Q ss_pred HHHHHh-cCCCchhHHHHHHHHHHh--cC--CCchhHHHHHHHHHHHcC---C-------CHHHHHHHHhhCCC---CCh
Q 041384 237 VLLACA-ELRDLRNGKAIHGYAYCC--GF--DFDHHLSAALMHMYCECT---E-------ALHPARIIFERTKV---KDV 298 (580)
Q Consensus 237 ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~---~-------~~~~a~~~~~~~~~---~~~ 298 (580)
.-..|. +.+..+++..+-.++... +. ...+..+..+.-+|...- . ....+...+++... .|+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334443 457777777777776662 21 123334444444444211 0 01122223333321 122
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMNM 377 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 377 (580)
...--+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++..|+.+.+.... .|...... ..-++.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhhhh
Confidence 222223334667788999999999998887678888888888888999999999999887665 33211100 000111
Q ss_pred hHhcCCHHHHHHH-------Hh-------------------cCCC-----CC-cchHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 378 YSKCGSITSSHQI-------FN-------------------EMAA-----RD-FVSWTTLISGYGFHGYGEEALQLFLEM 425 (580)
Q Consensus 378 ~~~~g~~~~A~~~-------~~-------------------~~~~-----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (580)
-..-++.+++... |+ .+.- .+ +.++..+.......+ ..+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-c
Confidence 1112333333332 22 1110 01 122222222211111 00000000 1
Q ss_pred HHcCCCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-
Q 041384 426 QESGVEP--DA------ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM- 496 (580)
Q Consensus 426 ~~~g~~p--~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 496 (580)
...-+.| +. ..+......+.+.+..++|...+.++-+ ..+.....|......+...|.+++|.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111222 21 1234455667788888999888877432 34445667777788889999999999988877
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 497 PMKP-STRILSSLVSACRIHGRLEVAEM--LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 497 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
...| ++.+..++...+.+.|+..-|.. ++..+.+.+|.++.+|..++.++-+.|+.++|.+.|+......
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 4566 56788999999999998877777 9999999999999999999999999999999999999887754
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=8.1e-08 Score=84.04 Aligned_cols=463 Identities=12% Similarity=0.068 Sum_probs=264.8
Q ss_pred HHHHHcCCCchHHHHhhccCCCC---Cc-cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCc
Q 041384 70 ISMYAKFSKPESAYQLFDEMPYR---DT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL 145 (580)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 145 (580)
+.-+...+++..|+.+++.-... .. .+--.+..++.+.|++++|+..+..+.+.. .|+...+..+.-+.--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33455567888888888765421 11 222335566778999999999999988754 55666666666666667888
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 041384 146 ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE 225 (580)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 225 (580)
.+|+.+-... +.+......|.+...+.++-++-..+-+.+.... .---+|.+.....-.+++|++++++....
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888776642 3444455566677777888777776666553332 11223333333344689999999998765
Q ss_pred CCCCCHHHHHHHH-HHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHH--cCC-CHHHHHHHHhhCCCCChhhH
Q 041384 226 GVKPTRVTLTIVL-LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE--CTE-ALHPARIIFERTKVKDVVIW 301 (580)
Q Consensus 226 ~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~a~~~~~~~~~~~~~~~ 301 (580)
.|.-...+.-+ -+|.+..-++-+.++++-.++.- +.++...+.......+ .|+ +.++...+-+..... |
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 34545554433 34566666777777776655542 2222222222222222 222 112222222222211 1
Q ss_pred HHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 302 SSIIRGYSQ-----SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 302 ~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
. .+.-+++ -.+-+.|++++-.+.+. .|.. -..++--|.+.+++.+|..+.+++. ...|-..+...++.
T Consensus 254 ~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 P-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVF 326 (557)
T ss_pred h-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHH
Confidence 1 1122222 23446677766655532 3332 2345556778888888877766543 11222222222221
Q ss_pred H-----hHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 377 M-----YSKCGSITSSHQIFNEMAAR-----DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446 (580)
Q Consensus 377 ~-----~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 446 (580)
+ ......+.-|.+.|+-.-+. .+.--.++.+.+.-..++++.+-.+..+.+- +..|....-.+..+.+.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHH
Confidence 1 11122345566666654432 3334566777777777888888888877775 23333333346778888
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRI-LSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~ 525 (580)
.|++.+|.++|-. +....++.+..-...|.++|.+++.++-|+.++-++..+.+..+ +..+.+.|.+.+.+=-|-..|
T Consensus 406 tgny~eaEelf~~-is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 406 TGNYVEAEELFIR-ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hcChHHHHHHHhh-hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888877 44333444444445677888888888888888887763334433 344556678888888888888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+.+...+|.... | .|+-....-+|.++....
T Consensus 485 d~lE~lDP~pEn-W---------eGKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 485 DELEILDPTPEN-W---------EGKRGACAGLFRQLANHK 515 (557)
T ss_pred hHHHccCCCccc-c---------CCccchHHHHHHHHHcCC
Confidence 888777765333 2 344444455565554443
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.3e-09 Score=109.38 Aligned_cols=242 Identities=16% Similarity=0.076 Sum_probs=175.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh---------ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 041384 313 DLSEAMKLFSRMRLERIEPNS-VTLLAILSSCT---------RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382 (580)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (580)
+.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.. +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999988866 4543 44444444332 2345789999999888765 446777788888889999
Q ss_pred CHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHH
Q 041384 383 SITSSHQIFNEMAA--R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFN 458 (580)
Q Consensus 383 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 458 (580)
++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998776 3 4457888889999999999999999999985 5653 333344555677899999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C
Q 041384 459 NVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPST-RILSSLVSACRIHGRLEVAEMLAHQLIEAE---P 533 (580)
Q Consensus 459 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~ 533 (580)
++++. ..+-+...+..+..+|...|+.++|...+.++. ..|+. ...+.+...|...| +.|...++.+.+.. |
T Consensus 431 ~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 96642 222235557778889999999999999999873 34543 44556666677777 47788777776644 4
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 534 ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.++.. +...|.-.|+-+.+... +++.+.+
T Consensus 508 ~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44443 55566777888877766 7777654
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=78.73 Aligned_cols=50 Identities=34% Similarity=0.667 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 041384 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 345 (580)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888899999998888888888888888888864
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=1.8e-06 Score=82.01 Aligned_cols=260 Identities=14% Similarity=0.117 Sum_probs=156.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (580)
+-.++..+-..|+++.|+.+++..... .|+.. -|..-.+.+...|+++.|..++++..+.. .+|..+-.--.....
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 334677888999999999999988755 67654 45555677888999999999999988766 566655556667777
Q ss_pred hcCCHHHHHHHHhcCCCCCcch----------HHHH--HHHHHhcCChHHHHHHHHHHHHc--CC---CCCHHH------
Q 041384 380 KCGSITSSHQIFNEMAARDFVS----------WTTL--ISGYGFHGYGEEALQLFLEMQES--GV---EPDAIT------ 436 (580)
Q Consensus 380 ~~g~~~~A~~~~~~~~~~~~~~----------~~~l--~~~~~~~~~~~~a~~~~~~~~~~--g~---~p~~~~------ 436 (580)
+.++.++|.++.....+.+... |-.+ ..+|.+.|++..|++-|..+... .+ +-|-.|
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~ 530 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKG 530 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcC
Confidence 8899999999988877643222 2222 34567777777777665554432 01 222222
Q ss_pred ----HHHHHHHHhccC-------CHHHHHHHHHHHHHhhC-CCCChhHHHHHH----HHhhhcC-ChHHHHHHHHhC---
Q 041384 437 ----VLAILSACNHAG-------LVKEAETLFNNVMKEKK-IALAIEHYACYV----DLLGKSG-KIEDACKVVSTM--- 496 (580)
Q Consensus 437 ----~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g-~~~~A~~~~~~~--- 496 (580)
|.-|+.-.-... -...|++++-.+..... ..+.......+- ....++. +-.+|.+--..+
T Consensus 531 tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~ 610 (700)
T KOG1156|consen 531 TLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDK 610 (700)
T ss_pred cHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333221111 12345556555433220 001111111111 1111111 111111111111
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 497 -----------PMKPSTRILSSLVSACRIHGR-LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 497 -----------~~~p~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+..||.. -+...+.+..+ .++|..++.......+.+...|..-...|.+.|.+.-+.+.+.++..
T Consensus 611 ~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 611 KKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred HHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 1224444 33444555555 47799999999999999999999999999999999999999988766
Q ss_pred CC
Q 041384 565 KG 566 (580)
Q Consensus 565 ~~ 566 (580)
..
T Consensus 688 ~~ 689 (700)
T KOG1156|consen 688 IH 689 (700)
T ss_pred hc
Confidence 54
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.1e-09 Score=94.40 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=133.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 041384 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (580)
.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..+-.+|.+..++..|+.++.+-.+. ++.++....-..+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi----- 299 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI----- 299 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH-----
Confidence 3555666666666666666665554 444555555555555555555555555544432 12222222223333
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 383 SITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 383 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
+-..++.++|.++++...+.. ..+.....++...|.-.++++.|+.++.++++
T Consensus 300 --------------------------~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 300 --------------------------HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred --------------------------HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 334444555555555555431 22334444444455555555555555555443
Q ss_pred hhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---MKP--STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.|+ .++..|..+.-+|.-.++++-++.-|++.. -.| -..+|-.+.....-.||+..|.+.|+-++..++++..
T Consensus 353 -mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 -MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred -hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 333 233344555555555555555555554441 122 2346666767777789999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.++.|+-.-.+.|++++|..+++......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999998876654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.6e-09 Score=94.66 Aligned_cols=199 Identities=17% Similarity=0.097 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMY 378 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (580)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 344455555555566666666555554432 2223344444444444555555555544444332 1
Q ss_pred HhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 379 SKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 379 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
.+...+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122344445555566666666666666665532222 2344555666667777777777777
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
++.++. .+.+...+..+...+...|++++|...+++.. .+.+...+..++..+...|+.+.|..+.+.+.+..
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 775542 22234556667777777777777777777652 22344555566667777778888777777666543
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=6.1e-10 Score=102.13 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=146.4
Q ss_pred HHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 041384 308 YSQSGDLSEAMKLFSRMRLER-IEPN--SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 384 (580)
....+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334566777888888877543 2232 2456666677788888888888888887764 34577888888888888888
Q ss_pred HHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 041384 385 TSSHQIFNEMAA--R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461 (580)
Q Consensus 385 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (580)
++|...|++..+ | +...|..+..++...|++++|++.+++..+. .|+..........+...++.++|...+.+..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888887765 2 3456777778888888888888888888874 5544322222223445677888888887644
Q ss_pred HhhCCCCChhHHHHHHHHhhhcCChHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 462 KEKKIALAIEHYACYVDLLGKSGKIED--ACKVVSTM-PMK----P-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 462 ~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
. ...|+...+ .+.. ...|+..+ +.+.+.+. ... | ....|..+...+.+.|++++|+..|+++.+.+|
T Consensus 193 ~--~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 223332222 2222 23444433 33323221 111 1 235677888888888888888888888888887
Q ss_pred CCchHHHH
Q 041384 534 ENAANYTL 541 (580)
Q Consensus 534 ~~~~~~~~ 541 (580)
++..-+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 55444433
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2.9e-09 Score=106.94 Aligned_cols=211 Identities=16% Similarity=0.022 Sum_probs=162.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH---------hcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCC
Q 041384 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS---------KCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY 414 (580)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 414 (580)
++.++|...+++..+.. +-+...+..+..+|. ..+++++|...+++..+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 44678889999888764 223445555555443 234588999999987763 55678888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHhhhcCChHHHHHH
Q 041384 415 GEEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI-EHYACYVDLLGKSGKIEDACKV 492 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 492 (580)
+++|...+++..+. .|+ ...+..+...+...|++++|...++++++. .|+. ..+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 564 577888888999999999999999997763 3432 2333344456678999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 493 VSTMP--MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 493 ~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+++.. .+| ++..+..+...+...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98873 235 44557778888899999999999999998888888888999998888888 4888888877653
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=2.4e-07 Score=89.95 Aligned_cols=254 Identities=17% Similarity=0.131 Sum_probs=144.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 041384 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPN-SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380 (580)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (580)
.-+...|...|++++|+.++++.++. .|+ +..|..-...+-+.|++.+|.+.++..+... .-|..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHH
Confidence 44566677788888888888877766 455 4566667777788888888888888877755 4456666667777788
Q ss_pred cCCHHHHHHHHhcCCCCCcc----------hH--HHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---CH---------
Q 041384 381 CGSITSSHQIFNEMAARDFV----------SW--TTLISGYGFHGYGEEALQLFLEMQES--GVEP---DA--------- 434 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p---~~--------- 434 (580)
.|++++|.+++....+++.. .| .....+|.+.|++..|+..|..+.+. .+.- |-
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 88888888888777665421 11 22356677788877777766555432 1111 21
Q ss_pred -HHHHHHHHHHhcc---CC----HHHHHHHHHHHHHhhCCCC-----------ChhHHHHHHHHh---hhcCChHHHHHH
Q 041384 435 -ITVLAILSACNHA---GL----VKEAETLFNNVMKEKKIAL-----------AIEHYACYVDLL---GKSGKIEDACKV 492 (580)
Q Consensus 435 -~~~~~l~~~~~~~---~~----~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~ 492 (580)
.+|..+++..-+. .. ...|.+++-.+-....... +..-...+..-. .+...-+++.+.
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2222233221111 11 1234444444221110000 000001111100 111111111111
Q ss_pred H-H----------hC----CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 041384 493 V-S----------TM----PMKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 493 ~-~----------~~----~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
- + +. +.+.|... +..-+.+.. =.++|.++++-+.+..|++..+|..-..+|.+.|++-.|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 1 0 00 11122211 122233444 4588999999999999999999999999999999999999
Q ss_pred HHHHH
Q 041384 557 EVWRV 561 (580)
Q Consensus 557 ~~~~~ 561 (580)
+.+.+
T Consensus 512 qaL~k 516 (517)
T PF12569_consen 512 QALKK 516 (517)
T ss_pred HHHHh
Confidence 87764
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.2e-07 Score=79.59 Aligned_cols=267 Identities=11% Similarity=0.031 Sum_probs=199.3
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 041384 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT-LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA 373 (580)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (580)
..|+.....+.+.+...|+.++|...|++..-. .|+..+ .....-.+...|+.+....+...+.... ..+...|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 347778888999999999999999999987633 343322 2222233457788888877777776533 122233333
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCC
Q 041384 374 LMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGL 449 (580)
Q Consensus 374 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~ 449 (580)
-.......++++.|+.+-++..+.|. ..|-.-...+...+++++|.-.|+..+. +.| +...|..|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 34445567889999999888776444 4444445678889999999999999887 466 66999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCChhHHHHHH-HHhh-hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 041384 450 VKEAETLFNNVMKEKKIALAIEHYACYV-DLLG-KSGKIEDACKVVSTM-PMKPST-RILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
+.+|.-.-...++ -++.+..+...+. ..+. ...--++|.+++++. ...|+. ...+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999999888775 3445555565553 3333 233457899999887 567754 56778888899999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
++.+...|+.. .+..|++.+...+.+.+|.+.|....+.+++.
T Consensus 462 e~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99998887654 49999999999999999999999988776553
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=4.8e-07 Score=87.60 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=107.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVD 478 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 478 (580)
.|......+.+.++.++|...+.+.... .| ....|......+...|.+++|.+.|...+ .+.|+ +.+..++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 4556667788888999999888888774 44 55677777778888999999999998855 35555 667889999
Q ss_pred HhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 479 LLGKSGKIEDACK--VVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 479 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
++.+.|+..-|.. ++.++ ...| +...|..+...+.+.|+.++|.+.|..+.++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777777 77777 4455 7889999999999999999999999999999876664
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=4.3e-09 Score=86.53 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=94.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD-AITVLAILSACNHA 447 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 447 (580)
..|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+-|++..+. .|+ ....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 3344455555555555555555554322 34445555555555555555555555552 342 24444555555555
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
|++++|...|++++..........+|..+.-+-.+.|+.+.|...|++. ...| .+.+...+.....+.|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555555544333333445555555555555555555555544 2222 3334445555555555555555555
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 041384 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
++.....+.+...+-..+.+-...|+-+.|.++
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 555555555555555555555555555555444
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=4.6e-07 Score=87.04 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=134.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH
Q 041384 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385 (580)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 385 (580)
.+.....+|.+|+.+++.+.++. .-+--|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34456667777777777776553 23334666677777788888777777542 23355667778888888
Q ss_pred HHHHHHhcCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 041384 386 SSHQIFNEMAARDF--VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKE 463 (580)
Q Consensus 386 ~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 463 (580)
.|.++-.+...|.. ..|-.-..-+-..|++.+|.+++-... .|+. .|..|-+.|..+..+++.++
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k---- 875 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK---- 875 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH----
Confidence 88777777666533 344444455666777777776664432 2332 35566777777777776665
Q ss_pred hCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
..-..-..+...+..-|...|++.+|..-|-+.. -|.+-++.|...+-+++|-++.+ ..+..|..-.....
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFL 946 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHH
Confidence 2222224456667777777888888887776653 34555566666666666655432 34445555555555
Q ss_pred HHHHhcCChHHHHHHHHH
Q 041384 544 MVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~ 561 (580)
|+-.-.| +.|.+++.+
T Consensus 947 waksigg--daavkllnk 962 (1636)
T KOG3616|consen 947 WAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHhhCc--HHHHHHHHh
Confidence 5544444 356666654
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=1.2e-08 Score=98.85 Aligned_cols=255 Identities=10% Similarity=0.024 Sum_probs=171.8
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc----
Q 041384 307 GYSQSGDLSEAMKLFSRMRLERIEPNS-VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC---- 381 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 381 (580)
.+...|++++|++.+.+-... .+|. ..+......+.+.|+.++|..++..+.+.+ +.+..-|..+..+....
T Consensus 13 il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 456678888888887664433 4444 345556667777888888888888888775 34444445555554222
Q ss_pred -CCHHHHHHHHhcCCCCCc--chHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 382 -GSITSSHQIFNEMAARDF--VSWTTLISGYGFHGYG-EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 382 -g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
.+.+....+++++....+ .....+.-.+.....+ ..+...+..+...|+++ +|..+-..|....+..-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 245666777776655221 2222222112221122 34556667777777654 3444444455555555555666
Q ss_pred HHHHHhh-------------CCCCCh--hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 041384 458 NNVMKEK-------------KIALAI--EHYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 458 ~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 520 (580)
....... .-+|+. .++..+...|-..|++++|++++++. ...|. +..|..-.+.+-+.|++++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 5543321 112333 24466788899999999999999977 45564 6788889999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
|.+.++.+..+++.|..+-+-.+..+.+.|++++|.+++..+.+.+.
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999988775
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.4e-07 Score=90.48 Aligned_cols=236 Identities=18% Similarity=0.141 Sum_probs=131.5
Q ss_pred HHhHHHHHhHhcCCHHHHHHHHhcCCC----------CCee-hHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCC---
Q 041384 167 VSTALLDLYSKCHHWLIALRVFEQMVI----------RNEV-SWTAMISGCIDSQNYDTGIDLFRAMQRE---GVKP--- 229 (580)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p--- 229 (580)
+...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++..- ..-+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 333355555555555555555544311 1111 2234566777888888888888887642 1112
Q ss_pred -CHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC---CCCh-hhHHHH
Q 041384 230 -TRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK---VKDV-VIWSSI 304 (580)
Q Consensus 230 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~---~~~~-~~~~~l 304 (580)
-..+++.|..+|.+.|++++|...++.+.+ +++... .+.+ ..++.+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALE-----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH-----------------------------HHHHhhccChHHHHHHHHHH
Confidence 234566666778888888888887555433 222211 1111 234555
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLE---RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (580)
...++..+++++|..+++...+. -+.++. ..-..+++.|...|...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLKM 380 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHHh
Confidence 66677778888888777754321 011111 01123344444445555
Q ss_pred CCHHHHHHHHhcCCCC-----------CcchHHHHHHHHHhcCChHHHHHHHHHHH----HcCC-CCCH-HHHHHHHHHH
Q 041384 382 GSITSSHQIFNEMAAR-----------DFVSWTTLISGYGFHGYGEEALQLFLEMQ----ESGV-EPDA-ITVLAILSAC 444 (580)
Q Consensus 382 g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~-~p~~-~~~~~l~~~~ 444 (580)
|++++|.++++++... ....++.|...|.+.+++++|.++|.+.. ..|. .|+. .+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 5555555554443321 11245556666666666666666665533 2221 2343 6788899999
Q ss_pred hccCCHHHHHHHHHHHHH
Q 041384 445 NHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~ 462 (580)
...|+++.|.++.+.++.
T Consensus 461 ~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHcccHHHHHHHHHHHHH
Confidence 999999999999888653
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4e-06 Score=83.62 Aligned_cols=345 Identities=12% Similarity=0.128 Sum_probs=197.9
Q ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCC
Q 041384 30 LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109 (580)
Q Consensus 30 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 109 (580)
...+..-+-+..++ ......++...+.| .-++.+||+|...|..+++-.+- .+. .|...=+..+.-||..++
T Consensus 841 ~deLv~EvEkRNRL-klLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLk----eN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRL-KLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLK----ENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred hHHHHHHHHhhhhH-HHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcc----cCCcchhhHHhhhhcccC
Confidence 45566667777777 77777888888777 46788888888888776553321 111 122211222333333333
Q ss_pred hhHHHHHHHH-----------------------HHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCC--Cc
Q 041384 110 YVRSLEMFRE-----------------------MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFE--LS 164 (580)
Q Consensus 110 ~~~a~~~~~~-----------------------m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 164 (580)
+.-|.-.|++ +.+ +.|...|..++.- +-.--+++.++.++.+ ++ .|
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~---R~D~~LW~~VL~e-----~n~~rRqLiDqVv~ta-l~E~~d 983 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVE---RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTA-LPETQD 983 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHh---ccChHHHHHHHhc-----cChHHHHHHHHHHHhc-CCccCC
Confidence 2221111110 111 1244445444421 1122345566666655 33 34
Q ss_pred hHHHhHHHHHhHhcCCHHHHHHHHhcCC-CCC-----eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041384 165 VFVSTALLDLYSKCHHWLIALRVFEQMV-IRN-----EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238 (580)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (580)
+.-.+.-+.++...+-..+-+++++++. +++ ...-|.||-...+. +..+..+..+++-.-+. |+ +.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------ia 1055 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------IA 1055 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HH
Confidence 5555666777888888888888888773 222 22334454444443 45566777766654321 22 22
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHH
Q 041384 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318 (580)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 318 (580)
..+...+-+++|..+|++. ..+......|+.-... ++.|.+.-++... +..|..+..+-.+.|...+|.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~~----ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIGS----LDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhhh----HHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHH
Confidence 3344455667777777654 2333444444444433 5555555554443 456888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 041384 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398 (580)
Q Consensus 319 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 398 (580)
+-|-+ ..|+..|..++..+.+.|.+++-.+++...++....|.+. +.|+-+|++.+++.+-++++. .||
T Consensus 1125 eSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN 1193 (1666)
T KOG0985|consen 1125 ESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPN 1193 (1666)
T ss_pred HHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCC
Confidence 76654 3466678888888888888888888888877776666655 567788888888777666543 244
Q ss_pred cchHHHHHHHHHhcCChHHHHHH
Q 041384 399 FVSWTTLISGYGFHGYGEEALQL 421 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~ 421 (580)
.........-|...+.++.|.-+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHH
Confidence 44444444444444444444333
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=3.4e-08 Score=81.39 Aligned_cols=198 Identities=13% Similarity=0.002 Sum_probs=90.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhc
Q 041384 336 LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFH 412 (580)
Q Consensus 336 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 412 (580)
...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+-|++..+ .+..+.|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344444455555555555555555443 22334444444455555555555555554333 2334444444455555
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHH
Q 041384 413 GYGEEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (580)
|++++|...|++....-..|. ..+|..+.-+..+.|+.+.|...|++.++. .+-.......+.+...+.|++-.|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555444322221 234444444444455555555555544331 11112233444444445555555555
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 492 VVSTM--PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 492 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
+++.. ...++..++...|..-...||.+.+-+.=.++.+..|.+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 54444 1224444444444444445555555444444444444443
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-06 Score=80.82 Aligned_cols=408 Identities=11% Similarity=0.045 Sum_probs=222.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHH----HHHhH
Q 041384 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL----LDLYS 176 (580)
Q Consensus 101 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~ 176 (580)
++-+...+++++|.....++...+ +-+...+..=+-++.+.+.++.|..+.+.- +-..+++.. .-+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~-------~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN-------GALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc-------chhhhcchhhHHHHHHHH
Confidence 455666777888888888877654 334556666666777777777777544421 111122221 22334
Q ss_pred hcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCchhHHHHHH
Q 041384 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV-TLTIVLLACAELRDLRNGKAIHG 255 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 255 (580)
+.+..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+++..--.. .-..++.+-.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------------- 157 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------------- 157 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------------
Confidence 66777777777775544455455555667777777777777777776664321111 1111111000
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHH---HHHHHhCCChhHHHHHHHHHHHCC----
Q 041384 256 YAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSI---IRGYSQSGDLSEAMKLFSRMRLER---- 328 (580)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~---- 328 (580)
...+. +.+..+.....+|..+ ...+...|++.+|++++.....-+
T Consensus 158 ---------------------------~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l 209 (652)
T KOG2376|consen 158 ---------------------------ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKL 209 (652)
T ss_pred ---------------------------hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh
Confidence 11111 2222222223333333 335667899999999998873221
Q ss_pred ----CC-----CCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHhHhcCC-HH-HHHHHHh
Q 041384 329 ----IE-----PNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG----NALMNMYSKCGS-IT-SSHQIFN 392 (580)
Q Consensus 329 ----~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~-~~-~A~~~~~ 392 (580)
.. -... +-..+...+-..|+..+|..++....+... +|.... |.|+. +....+ ++ .++..++
T Consensus 210 ~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~ 287 (652)
T KOG2376|consen 210 EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKK 287 (652)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHH
Confidence 11 1111 122345566778999999999999998763 333222 22221 111111 11 1222222
Q ss_pred cCCCC--------------CcchH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHH
Q 041384 393 EMAAR--------------DFVSW-TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH--AGLVKEAET 455 (580)
Q Consensus 393 ~~~~~--------------~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~ 455 (580)
..... ..... +.++..|.. .-+.+.++..... +..|. ..+.+++..+.+ ...+..+..
T Consensus 288 ~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e 362 (652)
T KOG2376|consen 288 SQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIE 362 (652)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHH
Confidence 22211 11111 222222222 2233333222211 12233 334445444332 225677777
Q ss_pred HHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041384 456 LFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVS--------TMP-MKPSTRILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 456 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
++....+ +.+-. ..+.-..+......|+++.|++++. .+. ..-.+.+..++...+.+.++.+.|..++
T Consensus 363 ~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl 440 (652)
T KOG2376|consen 363 LLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVL 440 (652)
T ss_pred HHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHH
Confidence 7777332 22222 4455566778889999999999998 442 3445556667777788888887888888
Q ss_pred HHHHh----cC---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 526 HQLIE----AE---PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 526 ~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..+.. .. +.-...+..++..-.+.|+.++|...++++.+..
T Consensus 441 ~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 441 DSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 77664 11 2233445566666777899999999999998743
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=6.1e-07 Score=76.83 Aligned_cols=385 Identities=11% Similarity=0.037 Sum_probs=208.5
Q ss_pred hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--CCeehHHH-HHHHHH
Q 041384 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--RNEVSWTA-MISGCI 207 (580)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~~~ 207 (580)
-+.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 35555555556666666666666555543 44566666777777777777777777777633 32222222 235566
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHH
Q 041384 208 DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC--AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285 (580)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 285 (580)
+.+.+.+|+.+...|... |....-..-+.+. ...+++..+..+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLve------------------------------ 136 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVE------------------------------ 136 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHH------------------------------
Confidence 677788888887777543 2222111111111 23344444444433
Q ss_pred HHHHHhhCC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCC
Q 041384 286 ARIIFERTK-VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364 (580)
Q Consensus 286 a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 364 (580)
+.+ +.+..+.+.......+.|+++.|.+-|+...+-+--.....|+..+ +..+.++...|++...+++++|+
T Consensus 137 ------Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 137 ------QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred ------hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 333 1222333333333445666666666666655443222333444333 33455666666666666666543
Q ss_pred CC-------------c---------------hhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHh
Q 041384 365 NF-------------D---------------VSIGNALMNMYSKCGSITSSHQIFNEMAAR-----DFVSWTTLISGYGF 411 (580)
Q Consensus 365 ~~-------------~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~ 411 (580)
+. | +..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.= .
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~ 288 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M 288 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c
Confidence 21 1 112232333456789999999999999863 677766554322 2
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCChhHHHHHHHHhh-hcCChHH
Q 041384 412 HGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKI-ALAIEHYACYVDLLG-KSGKIED 488 (580)
Q Consensus 412 ~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~ 488 (580)
.+++.+..+-++-+... .| ...||..++-.||+..-++.|..++.+-.. ... -.+...|+ |++++. ..-..++
T Consensus 289 ~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEE 364 (459)
T ss_pred cCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHH
Confidence 34566666666666664 44 568999999999999999999988776111 100 11233333 333333 3446777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH--HHhcCCH---HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 489 ACKVVSTMPMKPSTRILSSLVSA--CRIHGRL---EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 489 A~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
|.+-++.+........-..-+.. -...++- ..|++-+++.++.. ..+....++.|++..++..+.++|..-.
T Consensus 365 a~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 365 AFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 77666555211111111111111 1112221 12333344444433 2346677888999999999999998765
Q ss_pred hC
Q 041384 564 AK 565 (580)
Q Consensus 564 ~~ 565 (580)
+.
T Consensus 442 ef 443 (459)
T KOG4340|consen 442 EF 443 (459)
T ss_pred hh
Confidence 53
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.2e-07 Score=87.04 Aligned_cols=216 Identities=13% Similarity=0.003 Sum_probs=152.0
Q ss_pred CChHHHHHHHHHHHHhC-CCC--chhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 041384 347 SFLSHGLGVHCYIMKAG-LNF--DVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQ 420 (580)
Q Consensus 347 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 420 (580)
+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666666666432 222 245677778889999999999999998765 356789999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 041384 421 LFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-- 497 (580)
Q Consensus 421 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 497 (580)
.|++..+. .|+ ..++..+..++...|++++|.+.++..++ ..|+..........+...++.++|...|.+..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999984 664 57778888888899999999999999775 23433222222233456778999999996652
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 041384 498 MKPSTRILSSLVSACRIHGRLEVAEMLAHQLI-------EAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570 (580)
Q Consensus 498 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (580)
..|+...+ .......|+...+ ..++.+. +..|..+.+|..++..+.+.|++++|+..|++..+.++...
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23332222 2223335555433 2344443 34466778899999999999999999999999988765433
Q ss_pred C
Q 041384 571 Y 571 (580)
Q Consensus 571 ~ 571 (580)
+
T Consensus 271 ~ 271 (296)
T PRK11189 271 V 271 (296)
T ss_pred H
Confidence 3
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.1e-05 Score=80.64 Aligned_cols=187 Identities=14% Similarity=0.244 Sum_probs=135.8
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 041384 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFL 423 (580)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (580)
...+-+++|..+|+.. ..+....+.|+. .-+.++.|.+.-++..+| ..|+.+..+-.+.|.+.+|++-|-
T Consensus 1059 i~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHH
Confidence 3444556666666543 223333333332 345667777666665543 579999999999999999988764
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH
Q 041384 424 EMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR 503 (580)
Q Consensus 424 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 503 (580)
+ .-|+..|.-+++.+.+.|.|++..+++.. .+.....|.+. ..|+-+|++.+++.+-++++. -|+..
T Consensus 1129 k------adDps~y~eVi~~a~~~~~~edLv~yL~M-aRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A 1195 (1666)
T KOG0985|consen 1129 K------ADDPSNYLEVIDVASRTGKYEDLVKYLLM-ARKKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVA 1195 (1666)
T ss_pred h------cCCcHHHHHHHHHHHhcCcHHHHHHHHHH-HHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCch
Confidence 4 23678899999999999999999999986 44466667665 568899999999988877663 67888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
....+.+-|...|.++.|.-++.. .+.|..|+..+...|.+..|...-.+
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888889888988888877765 34477778888888888777655443
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.2e-08 Score=86.57 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=149.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHhhccC
Q 041384 271 ALMHMYCECTEALHPARIIFERTK--VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLA-ILSSCTRQS 347 (580)
Q Consensus 271 ~l~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~ 347 (580)
.+..+|.+.|- ...|++.++... .+-+.+|-.|-++|.+..++..|+.++.+-.+. .|-.+||.. ..+.+...+
T Consensus 228 Q~gkCylrLgm-~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGM-PRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 45556666666 666666666544 356778888899999999999999999998866 677777643 445555566
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041384 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427 (580)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (580)
+.+.|.++++...+.. +.++ ...-++...|.-.++++-|+..++++..
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nv-------------------------------EaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINV-------------------------------EAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC-Cccc-------------------------------eeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 6666666666665532 2222 2223334445555666777777777777
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHH
Q 041384 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLLGKSGKIEDACKVVSTMP-MK-PSTR 503 (580)
Q Consensus 428 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~ 503 (580)
.|+. ++..|..+.-+|.-.++++-++.-|++++.. --.|+ ..+|..+.......||+.-|.+-|+-.. .. .+..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 6643 5566666666666677777777777765542 22222 4556667667777777777777776652 22 3455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.++.|.-.-.+.|++++|..++..+....|.-..
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 6777777777777777777777777777766433
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=4.7e-06 Score=80.35 Aligned_cols=345 Identities=13% Similarity=0.096 Sum_probs=146.4
Q ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCC
Q 041384 30 LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGF 109 (580)
Q Consensus 30 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 109 (580)
-...+..|.....+ +++..+-+ ..|.|.=...-.+.++++...|+-+.|-++-+ .+..+. +.|+.|.+.|.
T Consensus 560 te~aigmy~~lhkw-de~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----sdgd~l-aaiqlyika~~ 630 (1636)
T KOG3616|consen 560 TEEAIGMYQELHKW-DEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKE----SDGDGL-AAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhcc----ccCccH-HHHHHHHHcCC
Confidence 34555666666666 66665433 23333323334455666666677666655432 222222 24667777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHh
Q 041384 110 YVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189 (580)
Q Consensus 110 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (580)
+.+|.+....-.+ ...|......+..++.+..-++.|-.+|+++.. ++ .-+..|-+-+-+.+|.++-+
T Consensus 631 p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d-----~d-----kale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 631 PAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD-----FD-----KALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred chHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----HH-----HHHHHHHcccHHHHHHHHHH
Confidence 7666654422111 223455555555555555445555555544321 11 11122222222333333322
Q ss_pred cCCCCCeeh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhH
Q 041384 190 QMVIRNEVS-WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHL 268 (580)
Q Consensus 190 ~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (580)
-.-...++. -......+...|+++.|+.-|-+.. ...-.+.+......+.+|..+++.+...... ..-
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~y 767 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGY 767 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--ccc
Confidence 221111110 1112222333444444443332211 1111233333444455555554444433221 112
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 041384 269 SAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF 348 (580)
Q Consensus 269 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 348 (580)
|..+.+-|...|+ ++.++++|-+.. .++..|..|.+.|+|+.|.++-.+.. |.......|..-..-+-..|+
T Consensus 768 y~~iadhyan~~d-fe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 768 YGEIADHYANKGD-FEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred chHHHHHhccchh-HHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 2233333333344 444444443321 24445556666666666666554433 223333344444444444555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHH
Q 041384 349 LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHGYGEEALQLFL 423 (580)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (580)
+.+|.+++-.+. .|+ ..|.+|-+.|..+...++.++-... -..+...+..-|-..|+...|.+.|-
T Consensus 840 f~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 840 FAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 555554442221 122 2344455555555555554443321 11233344444455555555554443
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.7e-07 Score=82.07 Aligned_cols=89 Identities=18% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 041384 477 VDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
...+.+.|++..|++.+.++ ...| |...|..-..+|.+.|.+..|+.-.+...+++|+....|..=+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555 1223 444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhC
Q 041384 555 AEEVWRVMRAK 565 (580)
Q Consensus 555 A~~~~~~~~~~ 565 (580)
|.+.|++.++.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 55555554443
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=9.4e-09 Score=92.70 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 041384 486 IEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW-LGAEEVWRVM 562 (580)
Q Consensus 486 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 562 (580)
+.+|..+|+++. ..+++.+.+.+..+....|++++|+++++++.+.+|.++.+...++-+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 444444444441 2234444444444444455555555555554444454444444444444444444 3344444443
Q ss_pred H
Q 041384 563 R 563 (580)
Q Consensus 563 ~ 563 (580)
.
T Consensus 263 ~ 263 (290)
T PF04733_consen 263 K 263 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.9e-07 Score=77.36 Aligned_cols=317 Identities=11% Similarity=0.018 Sum_probs=193.9
Q ss_pred HHHHHHHHHHcCCCchHHHHhhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHhh
Q 041384 65 ISNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI-ISLCS 140 (580)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~ 140 (580)
-+.+.+..+.+..++..|++++....++ +....+.|..+|-...++..|.++++++-.. .|...-|..- ...+-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3556666667777788888877665432 4556667777777788888888888887653 4444444322 24455
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC-CCeehHHHHHHHHHhcCChhHHHHHH
Q 041384 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-RNEVSWTAMISGCIDSQNYDTGIDLF 219 (580)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (580)
+.+.+..|..+...+.+.. ..-..+...-.......+++..+..++++.+. .+..+.+.......+.|+++.|++-|
T Consensus 90 ~A~i~ADALrV~~~~~D~~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HhcccHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 6677777777777765432 00111111111223456788888888888874 45555555555667889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHH----HHHHHHHHcCCCHHHHHHHHhhCCC
Q 041384 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSA----ALMHMYCECTEALHPARIIFERTKV 295 (580)
Q Consensus 220 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~a~~~~~~~~~ 295 (580)
+...+-+--.....|+..+.. .+.++.+.|.+...+++++|+...+..-- ..++. -..|+.......
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~S------- 238 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQS------- 238 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHH-------
Confidence 988776544456677766544 45688899999999999888653221100 00000 000000000000
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 041384 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 374 (580)
.-+..+|.-...+.+.|+++.|.+-+..|.-+. -..|+.|...+.-.- ..+++....+-+.-+.... +....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 011234444455678889999998888885332 355777766554322 2344555555555555554 3456788888
Q ss_pred HHHhHhcCCHHHHHHHHhcCCC
Q 041384 375 MNMYSKCGSITSSHQIFNEMAA 396 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~ 396 (580)
+-.||+..-++-|.+++.+-..
T Consensus 317 LllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcc
Confidence 8899999999999888876554
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=7.8e-06 Score=78.23 Aligned_cols=255 Identities=12% Similarity=-0.000 Sum_probs=138.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhh----ccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhHhcC
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT----RQSFLSHGLGVHCYIMKAGLNFD-VSIGNALMNMYSKCG 382 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 382 (580)
+...|++++|...+++..+.. +.+...+.. ...+. ..+....+.+.+.. .....|+ ......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 445566777777766665542 222222221 11111 23333344433333 1111222 233334455667777
Q ss_pred CHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHHH
Q 041384 383 SITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPDA--ITVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 383 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 456 (580)
++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777776654 2445666677777778888888888877766421 1222 2344566777788888888888
Q ss_pred HHHHHHhhCCCCChhHH-H--HHHHHhhhcCChHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 457 FNNVMKEKKIALAIEHY-A--CYVDLLGKSGKIEDACKV---VSTM-PMKP---STRILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
++++.......+..... + .++..+...|....+.+. .... ...| ..........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88754321111111111 1 222233334432222222 1111 1001 11222356666778899999999998
Q ss_pred HHHhcCC---------CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 527 QLIEAEP---------ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 527 ~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+..... .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8765331 134445667778889999999999998887654
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=4.1e-06 Score=81.81 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=74.0
Q ss_pred ChhHHHHHHH--HHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCHh
Q 041384 62 DPVISNSLIS--MYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLC-G--------FVLKAE 130 (580)
Q Consensus 62 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~ 130 (580)
|..+-..+++ .|..-|+.+.|.+-.+.+. +...|..|.+.+++.++.+-|.-.+-.|... | ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4445555553 3566677787777666664 4566777888888888777777666665431 1 1111 2
Q ss_pred hHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC-CeehHHHHHHHHHhc
Q 041384 131 LLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-NEVSWTAMISGCIDS 209 (580)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~ 209 (580)
+=..+.......|-+++|+.++.+..+.. .|=..|-..|.|++|.++-+.-..- =..+|......+-..
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222223334455555555555554432 2223344455555555554332111 111333334444444
Q ss_pred CChhHHHHHHHH
Q 041384 210 QNYDTGIDLFRA 221 (580)
Q Consensus 210 ~~~~~a~~~~~~ 221 (580)
++.+.|++.|++
T Consensus 872 ~Di~~AleyyEK 883 (1416)
T KOG3617|consen 872 RDIEAALEYYEK 883 (1416)
T ss_pred ccHHHHHHHHHh
Confidence 555555555543
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=2e-05 Score=78.94 Aligned_cols=527 Identities=12% Similarity=0.029 Sum_probs=243.6
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCC---Cccc--hHHHHHH
Q 041384 29 ILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR---DTIS--WNSIINC 103 (580)
Q Consensus 29 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~--~~~li~~ 103 (580)
.|..+=..|..-.+. ..|...|+..-+.. +.+...+....+.|++..+++.|..+.-...+. -... |-...-.
T Consensus 494 af~~LG~iYrd~~Dm-~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDM-KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 344444555555566 67777777766654 455666777778888888888887774332211 1111 2223334
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHH
Q 041384 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLI 183 (580)
Q Consensus 104 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (580)
+.+.++..+|+.-|+...+..+ -|...|..+..+|.+.|.+..|.++|.++.... |.+....--....-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHH
Confidence 5566777777777776665432 256677777777777777777777777665543 2222222223333455667777
Q ss_pred HHHHHhcCCCC----------CeehHHHHHHHHHhcCChhHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHh---c
Q 041384 184 ALRVFEQMVIR----------NEVSWTAMISGCIDSQNYDTGIDLFRAMQ-------REGVKPTRVTLTIVLLACA---E 243 (580)
Q Consensus 184 a~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~~~~~~ll~~~~---~ 243 (580)
|...+..+... -..++-.+...+.-.|-..+|.+++++-+ .+...-+...+..+-.+|. .
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 77666655211 01112222222222233333333333222 1111112222222111110 0
Q ss_pred CC-Cch--hHHHHH-HHHHHhcCCC--------------------chhHHHHHHHHHHH----cCCC---HHHHHHHHhh
Q 041384 244 LR-DLR--NGKAIH-GYAYCCGFDF--------------------DHHLSAALMHMYCE----CTEA---LHPARIIFER 292 (580)
Q Consensus 244 ~~-~~~--~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~~~~~~----~~~~---~~~a~~~~~~ 292 (580)
.. ++. ....++ .+....+..+ +...+..+...|.+ .++. ...+...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 000 000000 0011111111 11122222222111 1110 1112222221
Q ss_pred CC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh
Q 041384 293 TK---VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369 (580)
Q Consensus 293 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 369 (580)
.. ..+...||.|--. ...|.+.-|..-|-+-.... +.+..+|..+.-.+....+++.|...|....... +.+..
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~ 885 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV 885 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence 11 1233344433222 33344444444443332221 2233455555555566667777777776665443 22333
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcC-----CC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCC
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEM-----AA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQES---------GVEP 432 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------g~~p 432 (580)
.|--........|+.-++..+|.-- .+ ++..-|-........+|+.++-+...+.+... |.+-
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 3322222233445555555555431 11 12222333333334455554444333332211 2222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHH----HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA----CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSL 508 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 508 (580)
+...|.+......+.+.+..|.....+.+.--....+...|+ .+.+.++..|.++.|..-+.......+...-.+-
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 446677777666677777766666655432112223333333 3445566777788777666555333333332222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENA---ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+.. .-.|+++++.+.|+++......+. .....++.+....+.-+.|.+.+=+...
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 222 345788888888888887664333 3455666667777777888777554433
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.3e-05 Score=87.14 Aligned_cols=261 Identities=13% Similarity=0.011 Sum_probs=158.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHH
Q 041384 306 RGYSQSGDLSEAMKLFSRMRLERIEPNS----VTLLAILSSCTRQSFLSHGLGVHCYIMKAGL---NF--DVSIGNALMN 376 (580)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 376 (580)
..+...|+++.|...+++....-...+. .....+...+...|+++.|...+........ .+ .......+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3455678888888888776653111121 2334455556678888888888877765211 11 1233445566
Q ss_pred HhHhcCCHHHHHHHHhcCCC-------CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAA-------RD----FVSWTTLISGYGFHGYGEEALQLFLEMQESG--VEPD--AITVLAIL 441 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g--~~p~--~~~~~~l~ 441 (580)
.+...|+++.|...+++... ++ ...+..+...+...|++++|...+++..... ..+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67778888888887766443 11 1123344556667788888888887765431 1122 23344455
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCChhHH-----HHHHHHhhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHH
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHY-----ACYVDLLGKSGKIEDACKVVSTMPMK--PST----RILSSLVS 510 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~ 510 (580)
......|+++.|...++.+..-.........+ ...+..+...|+.+.|...+...... ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 66777889998888888754311111111101 11223445678888888888766311 111 11345666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
++...|+.++|...++++.+.. +....++..++.++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788888999988888887642 1233457778888888999999998888887644
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=1e-05 Score=70.94 Aligned_cols=324 Identities=10% Similarity=0.011 Sum_probs=180.2
Q ss_pred CchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 041384 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMI---SGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTI-VL 238 (580)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll 238 (580)
.++.-...+...+...|++..|+..|...++-|...|.++. ..|...|+...|+.-|.+..+. +||-..-.+ -.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 33444455667777788888898888888887777777664 4677888888888888877763 676543221 12
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHH
Q 041384 239 LACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAM 318 (580)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 318 (580)
..+.+.|.++.|..=|+.+++........ ..++.+. ..+.+ .......+..+...|+...|+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl----~~~~e---------~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKL----ALIQE---------HWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHH----HhHHH---------HHHHHHHHHHHhcCCchhhHH
Confidence 23556777777777777776654321110 0000000 00000 000111233344455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 041384 319 KLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARD 398 (580)
Q Consensus 319 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 398 (580)
.....+.+-. +.|...|..-..+|...|.+..|+.=++...+.. ..+
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------------------------------~Dn 222 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------------------------------QDN 222 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------------------------------ccc
Confidence 5555555432 2344444444444444455444444443333322 223
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H---HHHH---------HHHHhccCCHHHHHHHHHHHHHhhC
Q 041384 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI-T---VLAI---------LSACNHAGLVKEAETLFNNVMKEKK 465 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~---~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~ 465 (580)
...+.-+-..+...|+.+.++...++-.+ +.||.. . |..| +......++|.+++...+..++...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 33333334444444555555555544444 244431 1 1111 1123456677777777777665221
Q ss_pred CCC--ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 466 IAL--AIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 466 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
-.+ ....+..+-.++...|++.+|++...+. .+.|| +.++..-..+|.-...++.|+.-|+.+.+.++.|..+-..
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 111 1334455666777788888888887776 45564 6777777788888888888888888888888887765443
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=9.7e-08 Score=86.19 Aligned_cols=225 Identities=13% Similarity=0.101 Sum_probs=145.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhc
Q 041384 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-FDVSIGNALMNMYSKC 381 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 381 (580)
.+.+++...|+++.++ .++.... .|.......+...+....+-+.+..-++........ .+..........+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3556677777766443 3333333 566666655555554444444554444433333322 2333333344566778
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHH
Q 041384 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN----HAGLVKEAETLF 457 (580)
Q Consensus 382 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~ 457 (580)
|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+.+|..+|
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999998888775 45666677888899999999999999999873 4444 3333444332 234689999999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPE 534 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~ 534 (580)
+++. ....+++.+.+.+..+....|++++|.+++.+. ...| ++.++..++......|+. +.+.+.+.++....|.
T Consensus 191 ~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 191 EELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 9954 356678888899999999999999999998886 3333 566777777777777877 7788899999998888
Q ss_pred CchH
Q 041384 535 NAAN 538 (580)
Q Consensus 535 ~~~~ 538 (580)
++.+
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7763
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.6e-05 Score=77.77 Aligned_cols=256 Identities=11% Similarity=0.045 Sum_probs=152.3
Q ss_pred CCcchHHHHHH--hhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCC-----------
Q 041384 26 NTAILPSVIKA--CAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYR----------- 92 (580)
Q Consensus 26 ~~~~~~~ll~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 92 (580)
|..|-..++.. |...|+. +.|..-.+.+. +..+|..+...|.+.++.+-|.-.+-.|...
T Consensus 725 d~~TRkaml~FSfyvtiG~M-D~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSM-DAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccH-HHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34444444432 5567777 77776666554 3467888999999998888888888777511
Q ss_pred Cc-cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHH
Q 041384 93 DT-ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTAL 171 (580)
Q Consensus 93 ~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 171 (580)
|. ..-....-.-.+.|..++|+.+|.+-.+ |..+-+.|...|.+++|.++-+.--+.. =..||...
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNY 864 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHH
Confidence 11 2222233333567889999999998765 4455567778899999998876532222 12345555
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHH
Q 041384 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251 (580)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 251 (580)
..-+-..++.+.|++.|++...+--..+..|. .++.......+++. |...|.--.......|+.+.|.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHH
Confidence 55566678899999999876444222222111 12223333333332 2233333333445567777777
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 041384 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325 (580)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 325 (580)
.+|..... |-.++...|-.|+ .+.|..+-++. .|....-.+.+.|-..|++.+|...|.+..
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk-~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGK-TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccC-chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77766543 2334444455555 55555554433 244455566777777788888877776654
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=7.3e-08 Score=90.09 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=162.1
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHH
Q 041384 344 TRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQ 420 (580)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 420 (580)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |....-.|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35666777777777666654 446667777777777777777777777766653 44456666677777787778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHH
Q 041384 421 LFLEMQESGVEPDAITVLAIL-----------SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 421 ~~~~~~~~g~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (580)
.++.-+... |.. ..+. ..+..........++|-++....+..+|+.+...|.-.|--.|++++|
T Consensus 375 ~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 887765532 110 0000 122223344556667777666677668888899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 490 CKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 490 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+..|+.+ ..+| |...||-|...++...+..+|+..|.+++++.|.-..+...|+..|...|.|++|.+.|=..+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999988 4566 77899999999999999999999999999999999999999999999999999999998766553
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.1e-06 Score=79.88 Aligned_cols=238 Identities=13% Similarity=0.055 Sum_probs=154.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc------hhHHHHH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD------VSIGNAL 374 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 374 (580)
...+..+.-+..++..|.+-+....+.. -+..-++....++...|....+........+.|...- ...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3345556666777788888777776553 3333344555666777776666666555555442211 1111223
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEA 453 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a 453 (580)
..+|.+.++.+.+...|++...+... -....+....++++...+...- +.|.. .-...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 34666777888888888875432111 1112223344555555444433 34443 2222336678889999999
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
+..|.++++. .+-|...|..-.-+|.+.|.+..|++=.+.. ...| ....|.--..++....+++.|.+.|.+.++.
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998873 3667888999999999999999998876665 3344 3445655566667778999999999999999
Q ss_pred CCCCchHHHHHHHHHHhc
Q 041384 532 EPENAANYTLLSMVCSES 549 (580)
Q Consensus 532 ~~~~~~~~~~l~~~~~~~ 549 (580)
+|.+..+...+.+++...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999999888888777653
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=3.6e-07 Score=81.53 Aligned_cols=180 Identities=12% Similarity=-0.010 Sum_probs=110.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA----IT 436 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~ 436 (580)
....+..+...+...|++++|...|+++... +. ..+..+..++...|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4445555666666777777777777665542 11 24455666667777777777777777664 3322 13
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 041384 437 VLAILSACNHA--------GLVKEAETLFNNVMKEKKIALAI-EHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSS 507 (580)
Q Consensus 437 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 507 (580)
+..+..++... |+++.|.+.++.+++. .|+. ..+..+.... ...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 33334444433 5566666666665542 1221 1111111100 000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPEN---AANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+...+.+.|++++|+..++++.+..|++ +..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999987654 5789999999999999999999999887654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=4.5e-07 Score=77.24 Aligned_cols=119 Identities=8% Similarity=0.115 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSAC-RIHGR--LEVA 521 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~A 521 (580)
.++.+++...++..++ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555443 23344555666666666666666666666655 2333 445555555543 45455 3666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.++++++.+.+|.++.++..++..+.+.|++++|+..|+++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777777777776666666666666667777777777666665443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=8.3e-05 Score=80.95 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=104.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHHhC--CCCchh--H--
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLE--RIEPN--SVTLLAILSSCTRQSFLSHGLGVHCYIMKAG--LNFDVS--I-- 370 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-- 370 (580)
+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|.+.+....... ...... .
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 334455566779999998888876542 11122 2334445566778899999999888876521 111110 0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHH
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAARDFV-------SWTTLISGYGFHGYGEEALQLFLEMQES----GVEPDA-ITVL 438 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~~-~~~~ 438 (580)
....+..+...|+.+.|...+.....+... .+..+..++...|++++|...+++.... |..++. .+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 011224445678999999988776653211 1345667788889999999999887653 322222 4556
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 041384 439 AILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
.+..++...|+.++|...+.++++
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667778899999999999998776
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.4e-07 Score=73.65 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=57.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIHG 516 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~ 516 (580)
.+...+...|++++|...|+.++. --+.+...+..+..++.+.|++++|+..|++. ... .+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 344555556666666666665443 12233445555555555666666666655555 222 24455555555555556
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMV 545 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
+.++|+..++++.+..|.++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 66666666666666666555555555443
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=4.3e-05 Score=73.12 Aligned_cols=266 Identities=12% Similarity=0.026 Sum_probs=167.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHH-HHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHH---
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLER-IEPNSVTL-LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNA--- 373 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 373 (580)
..|..+...+...|+.+.+...+....... ..++.... ......+...|++++|.++++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 345556666667777888766666654432 12333222 222334567899999999999988764 333333331
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 041384 374 LMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450 (580)
Q Consensus 374 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 450 (580)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222235666677777765333322 234455668889999999999999999863 33457788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCh--hHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHH----H--HHHHHHHhcCCHHHH
Q 041384 451 KEAETLFNNVMKEKKIALAI--EHYACYVDLLGKSGKIEDACKVVSTMP-MKPSTRIL----S--SLVSACRIHGRLEVA 521 (580)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~----~--~l~~~~~~~~~~~~A 521 (580)
++|...+++.+......|+. ..|..+...+...|++++|..++++.. ..|....+ + .++.-+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999976533222333 345678889999999999999999973 22311111 1 223333444533333
Q ss_pred HHH---HHHHHhcCCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 522 EML---AHQLIEAEPE--NAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 522 ~~~---~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+. ........|. ........+.++...|+.++|...++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 2221111122 22233467788889999999999999886643
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.9e-06 Score=88.75 Aligned_cols=162 Identities=17% Similarity=0.192 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
.|.++++....-|.-+...++|+++.+. -|+ ..|..|...|.+.+.+++|.++++.|++..+ -....|..+++.
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHH
Confidence 3444444444444444444444444441 122 3344444444455555555555555444333 333344444444
Q ss_pred hhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 041384 480 LGKSGKIEDACKVVSTM-PMKP---STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 555 (580)
+.++.+-++|..++.++ ..-| ........+..-.+.||.+++..+|+..+...|.....|..+++.-.++|+.+.+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 44444444444444443 1111 1222233333334445555555555555555555555555555554455555555
Q ss_pred HHHHHHHHhCCC
Q 041384 556 EEVWRVMRAKGL 567 (580)
Q Consensus 556 ~~~~~~~~~~~~ 567 (580)
+.+|++....++
T Consensus 1654 R~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1654 RDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHhcCC
Confidence 555555444443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=1.1e-06 Score=70.82 Aligned_cols=95 Identities=11% Similarity=-0.082 Sum_probs=84.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
+..+...+...|++++|...|+.. ... .+...|..+..++...|++++|+..++++.+.+|.++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 556778889999999999999987 334 477888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 041384 551 NWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 551 ~~~~A~~~~~~~~~~~~ 567 (580)
++++|++.+++..+..+
T Consensus 107 ~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 107 EPGLAREAFQTAIKMSY 123 (144)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999887654
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=4.5e-06 Score=80.61 Aligned_cols=188 Identities=18% Similarity=0.124 Sum_probs=105.9
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041384 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443 (580)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 443 (580)
.+|-...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+-.+. +||+.-|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3444445556666777777777777777764 35666677777777777777777666662 6677777777766
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVA 521 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A 521 (580)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 66665666666666653321 1111112222345555555555433 2222 344555555555555555555
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 522 EMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
...|.......|++...|+.+.-+|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 555555555555555555555555555555555555555555444
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=8.1e-06 Score=84.43 Aligned_cols=227 Identities=15% Similarity=0.126 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-C-cchHHH
Q 041384 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNF---DVSIGNALMNMYSKCGSITSSHQIFNEMAAR-D-FVSWTT 404 (580)
Q Consensus 331 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~ 404 (580)
-++..|-..|......++.++|.++.++.... ++.- -..+|.++++.-..-|.-+...++|+++.+- | ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34456777788888999999999999988863 2222 2446777777777778888899999998873 3 357889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG 484 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (580)
|...|.+.+.+++|.++++.|.+. +.-....|..++..+.++.+-+.|..++.++++...-.-........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999987 4556688999999999999999999999998874433334666777778888999
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCch-HHHHHHHHHHhcCChHHHHHH
Q 041384 485 KIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAA-NYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 485 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~ 558 (580)
+.+.+..+|+... .+.....|+.+++.-.++|+.+.+..+|+++..+. |.... .|.-++..--+.|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999999883 44477899999999999999999999999999987 44443 344555544455665544444
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=2.6e-08 Score=56.59 Aligned_cols=33 Identities=42% Similarity=0.701 Sum_probs=27.5
Q ss_pred CCCCChhHHHHHHHHHHcCCCchHHHHhhccCC
Q 041384 58 GSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90 (580)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 90 (580)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888774
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=6.4e-06 Score=83.50 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=66.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
+..+..|.....+.|++++|..+++...+ +.||. .....+...+.+.+++++|+..+++.+. .-+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 44455555555555555555555555555 24433 3334444555555555555555555432 2222233444455
Q ss_pred HHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 478 DLLGKSGKIEDACKVVSTMP-MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.++.+.|++++|..+|+++. ..| +...+..+..++...|+.++|...|+++.+...+...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 55555555555555555552 122 2345555555555555555555555555555433333
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=0.00024 Score=62.67 Aligned_cols=179 Identities=11% Similarity=0.010 Sum_probs=122.1
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 041384 295 VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374 (580)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 374 (580)
..|...|..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++...++..+. .|+-...-.
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~- 261 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP- 261 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH-
Confidence 4577777788889999999999988777765443 345566667777788888888888777777654 344322111
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI---TVLAILSACNHAGLVK 451 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~~~~~ 451 (580)
.|- ++.+..+.++.| ......++|.++++..+...+........ .+..+-.++...|++.
T Consensus 262 --~YK---klkKv~K~les~------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 262 --FYK---KLKKVVKSLESA------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred --HHH---HHHHHHHHHHHH------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 122 222233333222 23346678889999888888753221223 3444556667789999
Q ss_pred HHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 452 EAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
+|++...+++. +.|+ +.++---..+|.-...++.|+.-|+...
T Consensus 325 eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 325 EAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999664 5565 7788888889998999999999998873
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=4.7e-06 Score=70.63 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh
Q 041384 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482 (580)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (580)
..+-..+...|+-+....+....... ..-|......++....+.|++..|+..+.++. ..-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHH
Confidence 55666677777777777777665442 12344556667788888888888888888854 3667778888888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 483 SGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
.|++++|..-|.+. .+.| ++...+.+...+.-.||.+.|+.++.......+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888888887776 3444 566778888888888888888888888888888888888888888888888888887765
Q ss_pred H
Q 041384 561 V 561 (580)
Q Consensus 561 ~ 561 (580)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.00028 Score=71.10 Aligned_cols=473 Identities=13% Similarity=0.057 Sum_probs=219.3
Q ss_pred HHHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHhh
Q 041384 65 ISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGF-VLKAELLAGIISLCS 140 (580)
Q Consensus 65 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~ 140 (580)
.|..|-..|+...+...|.+.|+... ..+...+......|++..+++.|..+.-..-+... ..-...|...--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 56666666666667777777777654 33555666777777777777777776322222110 001112222223345
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeeh-HH--HHHHHHHhcCChhHHHH
Q 041384 141 QIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVS-WT--AMISGCIDSQNYDTGID 217 (580)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~li~~~~~~~~~~~a~~ 217 (580)
..++...+..-|+...+.. |.|...|..+..+|.++|++..|.++|.+...-++.. |. -..-..+..|.+.+|++
T Consensus 574 ea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred CccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 5667777777777777665 6677778888888888888888888886663322221 11 11223455677777777
Q ss_pred HHHHHHHc------CCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHH-------hcCCCchhHHHHHHHHHHHcCCCHH
Q 041384 218 LFRAMQRE------GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC-------CGFDFDHHLSAALMHMYCECTEALH 284 (580)
Q Consensus 218 ~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (580)
.+...... +..--..++..+...+...|-...+..+++..++ .....+...+..+ .
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a-----------s 720 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA-----------S 720 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----------h
Confidence 77665432 1111223333333333333333333333333222 1111111111111 1
Q ss_pred HHHHHHhhCCCCChh--hHHHHHHH-HHhCCCh---h---HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--------cC
Q 041384 285 PARIIFERTKVKDVV--IWSSIIRG-YSQSGDL---S---EAMKLFSRMRLERIEPNSVTLLAILSSCTR--------QS 347 (580)
Q Consensus 285 ~a~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~---~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~ 347 (580)
.+-.+|-... |+.+ .+..++.. .-..+.. + -+.+.+-.-. ....+..++..+...+.+ ..
T Consensus 721 dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 721 DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcch
Confidence 1222222222 2211 11111111 1111111 1 0000000000 011122233333222221 11
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 041384 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLE 424 (580)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (580)
+...|...+...++.. .-+..+|+.|. .....|.+.-|...|-+-.. .+..+|..+...+.+..+++-|...|..
T Consensus 798 ~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHh-hccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 2234555555554432 22344444443 33555666666666654332 3445677777777777788888888877
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH--HH-hhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---
Q 041384 425 MQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNV--MK-EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--- 497 (580)
Q Consensus 425 ~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 497 (580)
.+.. .| |...+..........|+.-++..+|..- +. ..|-.|+..-|..........|+.++-+...+++.
T Consensus 876 ~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 876 VQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 7763 45 3344444333344566666666666541 11 12333333333333334445565555544444431
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHH
Q 041384 498 ---------MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 498 ---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
.+.+...|...+...-+.+.+..|.+...++...- .....+-..+++.+...|.++.|..
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 12233445554444455555555555554443211 1122233344455555555554443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=4.8e-05 Score=69.90 Aligned_cols=177 Identities=8% Similarity=0.030 Sum_probs=108.7
Q ss_pred HHHHHHHHhcCCCC---CcchHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 384 ITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY--GEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 384 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
+++++..++++.+. +..+|+.....+.+.|+ .++++..++++.+. .| |..+|.....++...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555555544432 22334433333334443 25567777777764 34 5567777777777777788888888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHH
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKS---GKI----EDACKVVSTM-PMKP-STRILSSLVSACRIH----GRLEVAEML 524 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~A~~~ 524 (580)
+++++.. +-+...|+.....+.+. |.. ++.+.+..++ ...| +...|+.+...+... +...+|.+.
T Consensus 166 ~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 7766522 23344455544444333 222 3555555444 3344 667888787777663 344668888
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcC------------------ChHHHHHHHHHHHh
Q 041384 525 AHQLIEAEPENAANYTLLSMVCSESG------------------NWLGAEEVWRVMRA 564 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~ 564 (580)
+.++...+|.++.++..|++.|.... ..++|.++++.+.+
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 88888888999999999999998643 34678888888743
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=1e-07 Score=54.17 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=4.2e-06 Score=80.82 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHH
Q 041384 331 PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISG 408 (580)
Q Consensus 331 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 408 (580)
|--..-..+...+.+.|-...|..+++.+. .+.-++.+|...|+..+|..+..+..+ ||...|..+.+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 333344456667777888888888888654 456678899999999999888776554 577788888887
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 488 (580)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-++-. +....+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHH
Confidence 77777788888887665432 11122222345789999999999866533 2345678888888889999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 489 ACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 489 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|.+.|... ...| +...||.+..+|.+.|+-.+|...++++.+-+-.+..+|-...-....-|.+++|.+.++++.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999877 4566 557899999999999999999999999999988888888888888889999999999999987754
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.55 E-value=1.3e-06 Score=68.82 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
......+...+...|++++|.++|+-+ ...| +...|..|...+...|++++|+..+.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556777788999999999999988 3455 66788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 041384 548 ESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~ 566 (580)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=1.8e-05 Score=67.46 Aligned_cols=155 Identities=10% Similarity=0.091 Sum_probs=115.6
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 454 (580)
+..|...|+++.+....+.+..+. ..+...++.++++..++...+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777788777655543332221 01123566788888888877752 446788999999999999999999
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 455 TLFNNVMKEKKIALAIEHYACYVDLL-GKSGK--IEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
..|+++.+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..++++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999765 2234577778888864 67777 59999999998 3445 67788999999999999999999999999
Q ss_pred hcCCCCchHHH
Q 041384 530 EAEPENAANYT 540 (580)
Q Consensus 530 ~~~~~~~~~~~ 540 (580)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988776443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1e-05 Score=68.63 Aligned_cols=155 Identities=17% Similarity=0.084 Sum_probs=123.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 448 (580)
..+-..+.-.|+-+....+...... .|......++....+.|++..|...+++..... ++|..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 5566677778888888777777543 344566668899999999999999999998752 567899999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKP-STRILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
+.+.|..-|.+.++-.+- +...++.+.-.|.-.|+.+.|..++.+.. ..+ |..+-..+..+....|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999997763333 34557888888899999999999998884 233 77788888888999999999998876
Q ss_pred HHH
Q 041384 527 QLI 529 (580)
Q Consensus 527 ~~~ 529 (580)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 643
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=9e-06 Score=72.50 Aligned_cols=183 Identities=15% Similarity=0.006 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---Ccc---h
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN-F-DVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFV---S 401 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~ 401 (580)
......+..+...+...|+++.|...++.+...... | ....+..+..++.+.|++++|...++++.+. +.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445667888888999999999999999999875421 1 2246677888999999999999999998752 222 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhH
Q 041384 402 WTTLISGYGFH--------GYGEEALQLFLEMQESGVEPDAI-TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472 (580)
Q Consensus 402 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 472 (580)
+..+..++... |+.++|.+.++++.+. .|+.. ....+..... . ... .. ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~-~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNR-LA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHH-HH--------HH
Confidence 55555666554 6789999999999885 56542 2222211100 0 000 00 01
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-MKP----STRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
...+...|.+.|++++|+..+++.. ..| ....+..+..++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1246677889999999999888872 222 346788899999999999999999888877665
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=3.6e-06 Score=67.58 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
...+...+...|++++|.+.++.. . .+.+...+..+...+...|++++|...++++.+.+|.++..+..++.++...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444455555555555555554 1 12244555555555666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhCC
Q 041384 551 NWLGAEEVWRVMRAKG 566 (580)
Q Consensus 551 ~~~~A~~~~~~~~~~~ 566 (580)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 100 EPESALKALDLAIEIC 115 (135)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666666655543
No 124
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=1.6e-05 Score=74.91 Aligned_cols=247 Identities=13% Similarity=0.079 Sum_probs=174.2
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 387 (580)
+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +-+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 467788888888888777664 3355677777777777777777888777777654 44566666777778888888888
Q ss_pred HHHHhcCCCCCcc-hHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 041384 388 HQIFNEMAARDFV-SWTTLI---------SGYGFHGYGEEALQLFLEM-QESGVEPDAITVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 456 (580)
.+.++......+. .|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|+..
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 8887765321110 000000 0111111233344444444 4555457888888888888899999999999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPST-RILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
|+.++. --+-|...||.|.-.++...+.++|+..|++. .++|.. +++-.|.-+|...|.+++|...|-.++.+.+.
T Consensus 453 f~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 453 FEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999775 23345778999999999999999999999988 577864 57788999999999999999999888875532
Q ss_pred ----------CchHHHHHHHHHHhcCChHHHHHH
Q 041384 535 ----------NAANYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 535 ----------~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
+..+|..|-.++...++.+-+.+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 235788887788888887755544
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3e-05 Score=65.30 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHH---hC-CCCchh-HHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhcCChHHHH
Q 041384 348 FLSHGLGVHCYIMK---AG-LNFDVS-IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTT---LISGYGFHGYGEEAL 419 (580)
Q Consensus 348 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~ 419 (580)
+.++..+++.++.. .| ..++.. +|..++-+....|+.+.|...++.+...=+.++.. -...+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44455555555443 22 223322 33334444555666666666666655421222211 122334456666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C
Q 041384 420 QLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M 498 (580)
Q Consensus 420 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 498 (580)
++++.+.+.+ +-|..++..=+...-..|+.-+|++-+.+-++ .+..|...|..+.+.|...|++++|.--++++. .
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6666666653 22445555444444455555566665555443 455566666666666666666666666666662 3
Q ss_pred CC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 499 KP-STRILSSLVSACRIHG---RLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 499 ~p-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
.| ++..+..+...+.-.| +...|...+.+++++.|.+...+..+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 33 4444555555543332 44556666666666666554444443
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=2.5e-05 Score=80.06 Aligned_cols=227 Identities=11% Similarity=0.098 Sum_probs=142.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 041384 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVT-LLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNAL 374 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 374 (580)
.+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667888889998999999999998876655 455443 22233344555554444333 22
Q ss_pred HHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 452 (580)
+.......++..+..+...+.. .+...+..+..+|-+.|+.++|..+++++.+.. +-|+...+.+...+... +.++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2223333333333333333332 233456677778888888888888888888754 23567777777777777 8888
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---------------------CHHHHHHHHH
Q 041384 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP---------------------STRILSSLVS 510 (580)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---------------------~~~~~~~l~~ 510 (580)
|.+++.+++.. |...+++.++.++|.++ ...| -..++..+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 88877776542 33344555555555544 1222 2233444445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
-|...++++++..+++.+++.+|.|..+...++.+|. +.|.. ...+++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 6777889999999999999999999999999999886 44444 4444443
No 127
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=2e-05 Score=72.31 Aligned_cols=187 Identities=11% Similarity=0.042 Sum_probs=136.3
Q ss_pred hHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH--
Q 041384 378 YSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHG-YGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLV-- 450 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~-- 450 (580)
+...+..++|..+..++.+. +..+|+.....+...| ++++++..++++... .| +..+|..-...+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 34456777777777776653 3345555555666666 679999999999986 44 445666555555566653
Q ss_pred HHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc---CC----HHHH
Q 041384 451 KEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIH---GR----LEVA 521 (580)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~---~~----~~~A 521 (580)
+++..+++++++ .-+-+..+|+...-++.+.|+++++++.++++ . ...+...|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 678888888765 33456778888888899999999999999998 3 334677887777666554 22 2578
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCc
Q 041384 522 EMLAHQLIEAEPENAANYTLLSMVCSES----GNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 568 (580)
+....+++..+|.|..+|..+..++... ++..+|.+.+.+..+.++.
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 8888899999999999999999999883 4567788888887665544
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.42 E-value=0.0018 Score=61.10 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 041384 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (580)
.+...+.++++...-..--..+|..+++.-.+....+.|..+|.++.++......+.+.++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4455556666554321112245667777777777888888888885543333336777777777665 567778888887
Q ss_pred hC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 495 TM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE--P-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 495 ~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
-- . ..-++......+.-+...|+-..+..+|+++.... | ....+|..++..-..-|+.+.+.++-+++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 54 2 23344444667777778888888888888888762 2 25567888888888888888888877766553
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.0032 Score=63.14 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 401 SWTTLISGYGFHGYGE---EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
+.+.|+..+.+.++.. +|+-+++...... +.|..+-..+++.|+-.|-+..|...|.. +.-..+..|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~t-LdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKT-LDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHh-cchHHhhhccchHH-HH
Confidence 4566777888877655 3444555544431 22455566778888888888888888887 55566666643332 33
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHhcC
Q 041384 478 DLLGKSGKIEDACKVVSTMP--MKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAE----PENAANYTLLSMVCSESG 550 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g 550 (580)
..+...|++..+...++... ..-+ ..+-..+..+| +.|.+....++..-=.++. -.-..+-+.....+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566777777777666552 1111 11222233333 5566666555443322322 112334456667777788
Q ss_pred ChHHHHHHHHHHH
Q 041384 551 NWLGAEEVWRVMR 563 (580)
Q Consensus 551 ~~~~A~~~~~~~~ 563 (580)
+.++-...++.|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8887777777664
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00012 Score=67.86 Aligned_cols=136 Identities=16% Similarity=0.047 Sum_probs=71.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCC
Q 041384 408 GYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGK 485 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 485 (580)
.+...|++++|+..++.+... .||. .........+...++..+|.+.+++++. ..|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 334455566666666665553 4433 3333344455556666666666665443 2233 3333445555666666
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 486 IEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 486 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+.+|+..+++.. .+-|+..|..|..+|...|+..++... .+..|+-.|++++|+..+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHH
Confidence 666666655552 233555566666666666655554442 2234455566666666666655
Q ss_pred hC
Q 041384 564 AK 565 (580)
Q Consensus 564 ~~ 565 (580)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=1.6e-05 Score=74.38 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=92.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 041384 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRI 514 (580)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 514 (580)
...|+..+...++++.|..+++++.+ .. |+ ....+++.+...++-.+|.+++.+. ...| +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~-~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE-RD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh-cC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455666667778888888888544 22 44 3445677777777777888877776 2233 66666777777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.++.+.|+.+.+++.+..|.+...|..|+.+|...|+++.|+..+..+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999888765
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00017 Score=67.00 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-CcchHHHHH
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-DFVSWTTLI 406 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 406 (580)
.|+...+...+.+......-..+...+.+..+. .-...-|..- -.+...|+.++|+..++.+.. | |+..+....
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~ 347 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAG 347 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 445555555555544443333333333322221 1112222222 234556788888888887764 3 555566667
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (580)
..+.+.++..+|.+.++++... .|+. .....+..++.+.|++.+|+.+++... ...+-++..|..|..+|...|+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~--~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL--FNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCCCchHHHHHHHHHHHhCc
Confidence 7788888888888888888884 6764 555567778888888888888888744 3566677788888888888888
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
..++.... ...+...|++++|+..+..+.+....+..
T Consensus 424 ~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 424 RAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred hHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 77766543 34556678888888888888877644433
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00011 Score=62.48 Aligned_cols=246 Identities=12% Similarity=0.064 Sum_probs=154.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 384 (580)
++-+.-.|.+..++..-...... +.+...-.-+.++|...|..... ..++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45556667887777665544322 23333344455566666654322 22222222 34444444444433334443
Q ss_pred HHHH-HHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 041384 385 TSSH-QIFNEMAARDF----VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 385 ~~A~-~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (580)
+.-. ++.+.+..+.. .....-...|+..+++++|++...... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 33333333221 222233456889999999999887722 222233333445677888999999998
Q ss_pred HHHhhCCCCChhHHHHHHHHhh----hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 460 VMKEKKIALAIEHYACYVDLLG----KSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
|.. + .+..+.+.|..++. -.+...+|.-+|+++. .+|++.+.+-.+..+...|++++|+.+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 543 2 33445666666654 3457999999999994 678999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhcCChHHHH-HHHHHHHhCC
Q 041384 534 ENAANYTLLSMVCSESGNWLGAE-EVWRVMRAKG 566 (580)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 566 (580)
.++.+...++-+-...|.-.++. +.+.++....
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999999888877888776554 4456655433
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00029 Score=59.61 Aligned_cols=188 Identities=11% Similarity=0.045 Sum_probs=134.4
Q ss_pred HhCCChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 309 SQSGDLSEAMKLFSRMRL---ER-IEPNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 309 ~~~~~~~~a~~~~~~m~~---~~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
....+.++..+++.++.. .| ..|+.. .|..++-+....|+.+.|...++.+.+.- +-+..+-..-...+-..|.
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 345678888888888853 34 556665 45667777788899999999999888754 3343333333334556789
Q ss_pred HHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 041384 384 ITSSHQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNV 460 (580)
Q Consensus 384 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (580)
.++|.++++.+.+. |.+++..-+......|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988875 4456666666777778888888888888776 5668899999999999999999999999997
Q ss_pred HHhhCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC
Q 041384 461 MKEKKIALAIEHYACYVDLLGKSG---KIEDACKVVSTM-PMKP 500 (580)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 500 (580)
+- --|.++..+..+.+.+.-.| +.+-|.++|.+. .+.|
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 64 22334455666777665554 456677777766 3444
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00036 Score=59.49 Aligned_cols=175 Identities=13% Similarity=0.029 Sum_probs=105.6
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 041384 356 HCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435 (580)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 435 (580)
.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3333334334443333344455777777888877777632 2222222234455666777888888888762 3455
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 041384 436 TVLAILSACNH----AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLV 509 (580)
Q Consensus 436 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 509 (580)
|.+.|..++.+ .+.+..|.-+|+++- ...+|+..+.+-...++...|++++|..++++.- ...++.++..++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 66656555543 446777888888842 3467777777777777788888888888887772 334555665555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcCCCCch
Q 041384 510 SACRIHGR-LEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 510 ~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 537 (580)
-.-...|. .+--.+.+.++....|..+-
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 54444554 34456666677666666554
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00018 Score=73.18 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=93.0
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 041384 364 LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLA 439 (580)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ 439 (580)
.+.++..+..|.....+.|..++|..+++.+.+ | +......+...+.+.+++++|+..+++..+. .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 345566777777777777777777777777665 3 3345666677777777777777777777774 4544 45556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSS 507 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 507 (580)
+..++...|++++|..+|++++. ..+-+..++..+..++...|+.++|...|++.. ..|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 66667777777777777777654 223335667777777777777777777777762 3344444443
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.28 E-value=0.0039 Score=58.95 Aligned_cols=130 Identities=11% Similarity=0.123 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHHcCCCchHHHHhhccCCC--C-CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041384 60 DADPVISNSLISMYAKFSKPESAYQLFDEMPY--R-DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGII 136 (580)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 136 (580)
|-|..+|+.||.-+... .++++.+.++++.. | ....|..-|..-...++++....+|.+....-. +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 56777788777755544 77788888777762 2 555677777777777888888888877766532 344444443
Q ss_pred HHhhc-cCCcH----HHHHHHHHHHHhCCCCC-chHHHhHHHHH---------hHhcCCHHHHHHHHhcCC
Q 041384 137 SLCSQ-IGELE----LGRQIHALVIVDGSFEL-SVFVSTALLDL---------YSKCHHWLIALRVFEQMV 192 (580)
Q Consensus 137 ~~~~~-~~~~~----~a~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~ 192 (580)
.-..+ .|... ...+.++-.+...++.+ +...|+..+.. |....+++...++++++.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 32211 12222 22233333333322322 23345544433 233345666777777763
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=4.6e-05 Score=61.69 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPST----RILSSLVSACRIHGRLEV 520 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~ 520 (580)
.++...+...++.+.+..+-.+ .....-.+...+...|++++|...|+... ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555444222111 11222234455556666666666666552 12332 133345566667777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223445556777777777777777777777653
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=5e-05 Score=60.87 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 041384 421 LFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM 498 (580)
Q Consensus 421 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 498 (580)
.+++..+ ..|+. .....+...+...|++++|...++.+.. ..+.+...+..+...+...|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 35533 5566677778889999999999998654 23446777888889999999999999998887 33
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 041384 499 K-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539 (580)
Q Consensus 499 ~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 539 (580)
. .+...+..+...+...|++++|...++++.+..|.+....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3 4667788888899999999999999999999999877743
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=5.6e-06 Score=57.09 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG-NWLGAEEVWRVMRAK 565 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 565 (580)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999998764
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=3e-06 Score=49.10 Aligned_cols=35 Identities=23% Similarity=0.605 Sum_probs=31.5
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 041384 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTR 231 (580)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 231 (580)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999873
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=2.7e-06 Score=61.37 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 041384 483 SGKIEDACKVVSTMP-MKP---STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 483 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456667777766662 222 344555677888888888888888888 666677777777778888888888888888
Q ss_pred HHH
Q 041384 559 WRV 561 (580)
Q Consensus 559 ~~~ 561 (580)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.18 E-value=6.3e-06 Score=55.98 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+...+...|++++|+..++++++..|.++.++..++.++...|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788999999999999999999999999999999999999999999999999887554
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=2.6e-05 Score=58.03 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
+..++..+...|++++|..++++. ...| +...+..+...+...|++++|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888876 3333 44667778888888899999999999999999988888999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 041384 551 NWLGAEEVWRVMRAKG 566 (580)
Q Consensus 551 ~~~~A~~~~~~~~~~~ 566 (580)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=3.6e-05 Score=60.11 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHH
Q 041384 475 CYVDLLGKSGKIEDACKVVSTMP-MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN---AANYTLLSMVC 546 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 546 (580)
.++..+.+.|++++|.+.|+.+. ..|+ ...+..+...+.+.|+++.|...++.+....|.+ +.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 33444444444444444444441 1111 1233344455555555555555555555544442 33455555555
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 041384 547 SESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+.|++++|...++++.+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHhCChHHHHHHHHHHHHHC
Confidence 55555555555555554443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.8e-06 Score=48.70 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=31.3
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 041384 95 ISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKA 129 (580)
Q Consensus 95 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 129 (580)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00011 Score=69.04 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=98.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAG 448 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~ 448 (580)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++.... .| +...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33455666677788888999999888887777778888888888888999999888865 34 5566666667788899
Q ss_pred CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
+++.|+.+.+++.+ -.+-+..+|..|+.+|...|++++|+..++.++
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999998664 233346689999999999999999999999886
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.4e-06 Score=47.97 Aligned_cols=33 Identities=30% Similarity=0.724 Sum_probs=28.9
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041384 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGVKP 229 (580)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 229 (580)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.014 Score=58.81 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 504 ILSSLVSACRIHGRL---EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
+.+.|+..+.+.++. -+|+-+++.....+|.|..+-..++.+|.-.|-...|.+.++.+.-+.|+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 356778888888875 47888899999999999999999999999999999999999987655554
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.1e-06 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.1
Q ss_pred ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 041384 94 TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVL 127 (580)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 127 (580)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888999999999999999999998888876
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.0049 Score=63.93 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=91.8
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHH
Q 041384 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL-TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273 (580)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (580)
+...+..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 5556777788887888888888887765554 3443322 2222234444443333222
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 041384 274 HMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL 353 (580)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 353 (580)
.++.......++.-+..+...|.+. .-+...+..+..+|.+.|+.+++.
T Consensus 88 -----------------------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 88 -----------------------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred -----------------------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHH
Confidence 2222333333443334444444432 223335556666666666666666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041384 354 GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428 (580)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (580)
.+|+++.+.. +-++.+.|.+...|... ++++|..++.+. +..+...+++..+.++|.++...
T Consensus 137 ~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 137 GVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence 6666666655 44566666666666666 666666665542 23345555666666666666653
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00022 Score=57.68 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC--hhHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDA----ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYAC 475 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 475 (580)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.++. ....|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence 33444444 467788888888888876 3332 2333455677888999999999998665 332222 223445
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041384 476 YVDLLGKSGKIEDACKVVSTMPMK-PSTRILSSLVSACRIHGRLEVAEMLAHQL 528 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 528 (580)
+...+...|++++|+..++..... ..+..+......+.+.|++++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888899999999998876422 34556677788889999999999988875
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00014 Score=56.71 Aligned_cols=105 Identities=20% Similarity=0.115 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPS----TRILSSLV 509 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 509 (580)
++..+...+...|++++|.+.+..++....-.+ ....+..+..++.+.|++++|...|+.+. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777776554221111 13345556677777777777777777652 2232 34567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 510 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
..+.+.|+.++|...++++.+..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888888776544
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00011 Score=64.34 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 466 IALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIH---GRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
.+-|...|..|...|...|+...|..-|.+. . ..+++..+..+..++... .+..++..++++++..+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4556778888888888888888888888877 2 345667777777775433 2457889999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCcee
Q 041384 541 LLSMVCSESGNWLGAEEVWRVMRAKGLSKSYGFS 574 (580)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 574 (580)
.|+-.++..|++.+|...|+.|.+.....+|+.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999999998877766644
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=3.4e-05 Score=72.68 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=84.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGR 517 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 517 (580)
-...+...|+++.|+..|+++++. .+.+...|..+..+|...|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567789999999999997762 2344667888888999999999999999888 3444 66788888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 518 LEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 518 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+++|+..++++++.+|.++.+...+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999988777765553
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.00013 Score=61.06 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
+..+...+...|++++|...|++.. ..|+ ...+..+...+.+.|++++|...++++.+..|.++..+..++.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444444555555555555555441 1111 2456666777777777777777777777777777777777777777
Q ss_pred hcCC--------------hHHHHHHHHHHHhCC
Q 041384 548 ESGN--------------WLGAEEVWRVMRAKG 566 (580)
Q Consensus 548 ~~g~--------------~~~A~~~~~~~~~~~ 566 (580)
..|+ +++|.+++++..+.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7666 456666666665544
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=5.5e-05 Score=65.71 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=88.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 041384 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRL 518 (580)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 518 (580)
..-+.+.+++.+|+..|.++++ -.+-+...|..-..+|.+.|.++.|++-.+.. .+.| ...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4456778899999999999775 23344666777788999999999999877776 4555 456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 041384 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553 (580)
Q Consensus 519 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
++|++.|+++++++|.|......|-.+-.+.+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987777776655555544
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.92 E-value=1.8e-05 Score=54.33 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.+.|++++|++.++++.+..|.+..++..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888999999999999999988888999999999999999988888766554
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00016 Score=60.36 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 469 AIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
....+..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..++++.+..|.+...+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666677777788888888888776 22222 347888888999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 041384 544 MVCS-------ESGNWLGAEEVWRVM 562 (580)
Q Consensus 544 ~~~~-------~~g~~~~A~~~~~~~ 562 (580)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888665555543
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=5.8e-05 Score=52.67 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
...|.+.++++.|.++++++...+|.++..+...+.++...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999887665
No 161
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.023 Score=52.32 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 454 (580)
+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... .-.+..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33444455555555555555555555555555555555555544433221 112344555555555555555555
Q ss_pred HHHHH
Q 041384 455 TLFNN 459 (580)
Q Consensus 455 ~~~~~ 459 (580)
.+..+
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 55444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=7.4e-05 Score=53.79 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST-RILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....|.. .....+..++.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444444444444332221112222333444444444444444444442211211 222233444444455555554444
Q ss_pred H
Q 041384 527 Q 527 (580)
Q Consensus 527 ~ 527 (580)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.82 E-value=0.00069 Score=61.57 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA-CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+..++. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57777888888888888999998888542 2234444444443 33456777799999998874 55566778888899
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 480 LGKSGKIEDACKVVSTMP-MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+...|+.+.|..+|++.. .-|. ...|...+.--.+.|+.+....+.+++.+..|.+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999998873 2233 348888998889999999999999999988877555
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00025 Score=61.78 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=80.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhc
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKS 483 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 483 (580)
..-+.+.+++++|+..|.+.++. .| |++.|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 34567889999999999999994 66 667777788899999999999999888664 4444 66788999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHH
Q 041384 484 GKIEDACKVVSTM-PMKPSTRILSSL 508 (580)
Q Consensus 484 g~~~~A~~~~~~~-~~~p~~~~~~~l 508 (580)
|++++|++.|++. .+.|+-.+|..=
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 9999999999888 578877666433
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.001 Score=55.70 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=67.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD--AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++++.. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3556666666667777777777777665422221 245556666666677777777777765542 122244445555
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 478 DLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
.++...|+...+..-++.. ...+++|.++++++.+.+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence 5565555554444322211 122577888888888888877
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.2e-05 Score=43.17 Aligned_cols=31 Identities=23% Similarity=0.666 Sum_probs=24.3
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041384 197 VSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227 (580)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 227 (580)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 167
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.036 Score=51.55 Aligned_cols=231 Identities=14% Similarity=0.069 Sum_probs=124.6
Q ss_pred HHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHHhCCCC----chhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C
Q 041384 325 RLERIEPNSV-TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF----DVSIGNALMNMYSKCGSITSSHQIFNEMAA--R 397 (580)
Q Consensus 325 ~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 397 (580)
...-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+.. |
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3334455543 22333333333 4555555555554433222 234555666666677777777776665443 2
Q ss_pred Ccc-------hHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHhccCC-HHHHHHHHHHHH
Q 041384 398 DFV-------SWTTLISGYGFH----GYGEEALQLFLEMQESGVEPDA-ITVLAILS---ACNHAGL-VKEAETLFNNVM 461 (580)
Q Consensus 398 ~~~-------~~~~l~~~~~~~----~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~---~~~~~~~-~~~a~~~~~~~~ 461 (580)
+.. +-..+-+..+.. -+...-+.+|+...... .|. .....|+. -+-+.|. -++|+.+++.++
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221 111112222211 12334455666666543 333 22222332 2445555 778888888765
Q ss_pred HhhCCCCChhHHHHHH----HHhhhc---CChH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHH
Q 041384 462 KEKKIALAIEHYACYV----DLLGKS---GKIE---DACKVVSTMPMKP----STRILSSLVSA--CRIHGRLEVAEMLA 525 (580)
Q Consensus 462 ~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~A~~~~ 525 (580)
+- -+-|..+-|.+. ..|... ..+. +-..+.++.+++| +...-|.|.+| +..+|++.++.-.-
T Consensus 408 ~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 42 122333322221 222221 1112 2233344444444 34456667666 46789999999888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 526 HQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 526 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.-+.+..| ++.+|..++-++....+|++|..+++.+
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 88888888 8999999999999999999999999864
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.75 E-value=0.00071 Score=63.89 Aligned_cols=101 Identities=14% Similarity=0.023 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (580)
....+...|++++|++.|++.++. .| +...|..+..+|...|++++|+..++++++. .+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345567788999999999999885 45 5577778888888999999999999987652 233466788888889999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 041384 484 GKIEDACKVVSTM-PMKPSTRILSSLV 509 (580)
Q Consensus 484 g~~~~A~~~~~~~-~~~p~~~~~~~l~ 509 (580)
|++++|+..|++. ...|+......++
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999887 4556554444333
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=4.1e-05 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=24.5
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 95 ISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125 (580)
Q Consensus 95 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 125 (580)
.+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.001 Score=65.61 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
++..+..+.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++.....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344555554444455666666666666666666 455666666666666666666666666555443
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=97.74 E-value=0.00041 Score=55.21 Aligned_cols=89 Identities=8% Similarity=0.038 Sum_probs=71.7
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 041384 476 YVDLLGKSGKIEDACKVVSTMP-MK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
...-+...|++++|..+|+-+. .. -+...|..|...+...++++.|+..+..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444557888888888887763 23 366677788888888889999999999988888888888999999999999999
Q ss_pred HHHHHHHHHHh
Q 041384 554 GAEEVWRVMRA 564 (580)
Q Consensus 554 ~A~~~~~~~~~ 564 (580)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99998887766
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0029 Score=57.79 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=41.4
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHhhCC--CCC--hhHHHHHHHHhhhcCChHHHHHHHHhCC---CC-----CCHH-HHHH
Q 041384 442 SACNHA-GLVKEAETLFNNVMKEKKI--ALA--IEHYACYVDLLGKSGKIEDACKVVSTMP---MK-----PSTR-ILSS 507 (580)
Q Consensus 442 ~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-----p~~~-~~~~ 507 (580)
..|... |+++.|++.|+++..-... .+. ..++..++..+.+.|++++|.++|++.. .. .+.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 5555555555554431111 111 2334455556666666666666666541 01 1111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
.+-.+...||...|...+++....+|
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22234445666666666666666654
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.002 Score=63.62 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=94.8
Q ss_pred CCcchHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHHHH
Q 041384 397 RDFVSWTTLISGYGF--H---GYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHA--------GLVKEAETLFNNVMK 462 (580)
Q Consensus 397 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 462 (580)
.|...|...+.+... . +..+.|..+|++..+. .|+. ..+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344555555555332 2 2366888888888884 6754 4444443333221 122333444443222
Q ss_pred hhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
....+.+...+..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1224445567777777777889999999999998 46788889999999999999999999999999999999886
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.00015 Score=49.14 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 476 YVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
+...+.+.|++++|++.|+++ ...| +...+..+...+...|++++|...++++.+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 3445 566788888889999999999999999999998875
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00066 Score=50.23 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSACRIHGRLE 519 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~ 519 (580)
..+...|++++|...++++++. .+.+...+..+...+...|++++|.+.++.. .. +.+...+..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344445555555555543321 1112233444455555555555555555544 11 223345555556666666666
Q ss_pred HHHHHHHHHHhcCC
Q 041384 520 VAEMLAHQLIEAEP 533 (580)
Q Consensus 520 ~A~~~~~~~~~~~~ 533 (580)
.|...+++..+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655544
No 176
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.045 Score=50.46 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHH
Q 041384 273 MHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHG 352 (580)
Q Consensus 273 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 352 (580)
+..+...|. ...|.++......|+...|-..+.+++..++|++-..+-.. +-++..|..++.+|.+.|+..+|
T Consensus 184 i~~li~~~~-~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 184 IRKLIEMGQ-EKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHCCC-HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 333344444 45555555555555555555555555555555544433211 11223444445555555554444
Q ss_pred HHHHH
Q 041384 353 LGVHC 357 (580)
Q Consensus 353 ~~~~~ 357 (580)
..+..
T Consensus 257 ~~yI~ 261 (319)
T PF04840_consen 257 SKYIP 261 (319)
T ss_pred HHHHH
Confidence 44443
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.00091 Score=49.01 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccC--------ChHHHHHHHHHHHHhCCCCchhHHHH
Q 041384 303 SIIRGYSQSGDLSEAMKLFSRMRLERI-EPNSVTLLAILSSCTRQS--------FLSHGLGVHCYIMKAGLNFDVSIGNA 373 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (580)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+...+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345566677999999999999999999 999999999999887643 35567889999999999999999999
Q ss_pred HHHHhHh
Q 041384 374 LMNMYSK 380 (580)
Q Consensus 374 l~~~~~~ 380 (580)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9987765
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0011 Score=62.61 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=66.6
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh--CCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC----CCcch
Q 041384 328 RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA----RDFVS 401 (580)
Q Consensus 328 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 401 (580)
+.+.+...+..++..+....+++.+..++...+.. ....-+.+..++++.|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455666666666666666666666666666553 2222233334666666666666666665554333 45556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 446 (580)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666666666555555545555555544444444
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.00074 Score=61.37 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK-SGKIEDACKVVSTM--PMKPSTRILSSLVSA 511 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 511 (580)
.+|..+++...+.+..+.|..+|.++.+. ...+..+|...+..-.. .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999997642 23344555555555334 56777799999998 356688899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENA---ANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+.+.|+.+.|..+|+++...-|... .+|...+..=.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876544 68999999999999999999999888764
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00014 Score=49.82 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=31.3
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 482 KSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
..|++++|+++|+++ . .+-+...+..++..|.+.|++++|..+++++....|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555554 1 222444555555555666666666666666666555554444333
No 181
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.53 E-value=0.0012 Score=62.46 Aligned_cols=118 Identities=8% Similarity=0.042 Sum_probs=92.6
Q ss_pred CCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC-C-----CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041384 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMVI-R-----NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 235 (580)
+.+......+++.+....+++.+..++-+... | -..+..++|+.|.+.|..+.++.+++.=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555566667777677777777777666522 1 23355689999999999999999999988899999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHc
Q 041384 236 IVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCEC 279 (580)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (580)
.+|+.+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888777777777666666664
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.53 E-value=0.018 Score=50.99 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPE---NAANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.+..-|.+.|.+..|..-++.+.+..|. ...+...++.+|...|..++|.++.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4456688899999999999999998876 44557788899999999999999877653
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.015 Score=47.09 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC---CHHHHH
Q 041384 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKP---STRILS 506 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~ 506 (580)
.|+...-..|..+....|+..+|...|++.+. --+..|....-.+.++....+++..|...++++. ..| ++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 45554445555666666666666666666442 2233445555555566666666666666665551 111 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
.+.+.+...|...+|+..|+.+..-.|. +......+..+.++|+..+|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 4556666666666666666666665543 222344444555666555554433
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.041 Score=50.31 Aligned_cols=157 Identities=10% Similarity=0.080 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 041384 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL-RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278 (580)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (580)
...+..|...|++..|-.++..+ ...|... |+++.|.+.|++..+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~------------------- 143 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAE------------------- 143 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 34456677777777776666554 3356566 788888887665543
Q ss_pred cCCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhhccCChH
Q 041384 279 CTEALHPARIIFERTKVK--DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE-----PNSV-TLLAILSSCTRQSFLS 350 (580)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~ 350 (580)
+|+.-..+ -...+..+...+.+.|++++|..+|++....... .+.. .|...+-++...|+..
T Consensus 144 ----------~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 144 ----------LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp ----------HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred ----------HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 22221111 1123555677888999999999999988765322 1222 2333444556678888
Q ss_pred HHHHHHHHHHHh--CCCCc--hhHHHHHHHHhHh--cCCHHHHHHHHhcCCCCCcc
Q 041384 351 HGLGVHCYIMKA--GLNFD--VSIGNALMNMYSK--CGSITSSHQIFNEMAARDFV 400 (580)
Q Consensus 351 ~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 400 (580)
.|...++..... ++..+ ......|+.++-. ...++.+..-|+.+.+-|..
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 888888887753 23222 3344455555543 33466666666666655543
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0023 Score=48.92 Aligned_cols=84 Identities=25% Similarity=0.180 Sum_probs=46.6
Q ss_pred HHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhc
Q 041384 478 DLLGKSGKIEDACKVVSTMP---MKP--STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE---NAANYTLLSMVCSES 549 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 549 (580)
.++-..|+.++|+.+|++.. ... ....+..+...+...|++++|+.++++.....|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 34444555555555555441 111 1224445556666666666666666666666555 555555566666666
Q ss_pred CChHHHHHHHHH
Q 041384 550 GNWLGAEEVWRV 561 (580)
Q Consensus 550 g~~~~A~~~~~~ 561 (580)
|+.++|.+.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 666666666544
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0013 Score=58.58 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHH
Q 041384 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP-MKP----STRILSSLVS 510 (580)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~ 510 (580)
|...+....+.|++++|...|+.+++...-.+ ....+..+...|...|++++|...|+.+. ..| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44433333445666666666666544221111 02234445555555555555555555441 111 1223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
.+...|+.+.|...++++.+..|.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44445555555555555555555443
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.47 E-value=0.063 Score=52.26 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHH----------
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPSTR---------- 503 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~---------- 503 (580)
.+...+...+.+...+..|.++|.++-. ...+++.....++|.+|..+-++.+ ..|++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3333333344445555555566555211 2334555556666666666665553 233321
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 504 -ILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 504 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
-|...-.+|.++|+..+|.++++++....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 12223355677888888888888876543
No 188
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0032 Score=52.51 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH-
Q 041384 438 LAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACR- 513 (580)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~- 513 (580)
..+...+...|++++|...|++++.....++ ...++..+..++...|++++|+..+++. ...| ....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3333344444555555555554432111111 1223444444555555555555555444 1122 2233333333333
Q ss_pred ------hcCCHH-------HHHHHHHHHHhcCCCCc
Q 041384 514 ------IHGRLE-------VAEMLAHQLIEAEPENA 536 (580)
Q Consensus 514 ------~~~~~~-------~A~~~~~~~~~~~~~~~ 536 (580)
..|+++ +|...+++.....|++.
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 555555 55556666666666544
No 189
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.003 Score=57.62 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=111.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhhCCCCChhH------------
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS--ACNHAGLVKEAETLFNNVMKEKKIALAIEH------------ 472 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 472 (580)
.++...|+.++|...--...+. .++ ..+..+++ ++...++.+.|...|++.++ ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 4556678888888877776663 221 22333333 34457788888888887554 3344221
Q ss_pred -HHHHHHHhhhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 041384 473 -YACYVDLLGKSGKIEDACKVVSTM-PM-----KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545 (580)
Q Consensus 473 -~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
+..=..-..+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+..+|+.--+.+..++|.-...+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 112223456789999999999887 33 34556677777778889999999999999999999888888889999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCc
Q 041384 546 CSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
+.-.++|++|.+-+++..+..-.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999888765443
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.44 E-value=0.00012 Score=41.44 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 041384 525 AHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
++++++.+|+|+.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.43 E-value=0.06 Score=50.10 Aligned_cols=185 Identities=18% Similarity=0.118 Sum_probs=109.8
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAAR-------DFVSWTTLISGYGF---HGYGEEALQLFLEMQESGVEPDAITVLAILS 442 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 442 (580)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566667777777777766652 11122233445555 7888888888888666556778888887777
Q ss_pred HHhc---------cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCCh----HHHHHHH---HhC-------CCC
Q 041384 443 ACNH---------AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI----EDACKVV---STM-------PMK 499 (580)
Q Consensus 443 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~~-------~~~ 499 (580)
.|-. ....++|...|.+..+ +.|+...--.++..+...|.. .+..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 2346778888887543 345533322333333333431 1222222 111 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 041384 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 571 (580)
.+...+.+++.++.-.|+.+.|.+.++++....|+.-..-..+ +-+.+++.+.+..-.++|
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~-----------~ni~Li~~~~~~~~~~~~ 363 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL-----------ENIKLIRHFRKRPEEPSP 363 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH-----------HHHHHHHHHhcCCCCCCc
Confidence 4555667888999999999999999999999987665422222 335666666655443433
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0038 Score=45.85 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCC--------chhHHHHHHHHHHhcCCCchhHHHH
Q 041384 201 AMISGCIDSQNYDTGIDLFRAMQREGV-KPTRVTLTIVLLACAELRD--------LRNGKAIHGYAYCCGFDFDHHLSAA 271 (580)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 271 (580)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +.....+++.|+..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445666677999999999999999999 9999999999998876532 3345667778888888888888877
Q ss_pred HHHHHHH
Q 041384 272 LMHMYCE 278 (580)
Q Consensus 272 l~~~~~~ 278 (580)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.36 E-value=0.0005 Score=41.95 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.++..+..+|.+.|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999888764
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.085 Score=51.41 Aligned_cols=86 Identities=8% Similarity=0.047 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHH----------
Q 041384 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWT---------- 403 (580)
Q Consensus 334 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------- 403 (580)
.+...+...+.+...+..|-++|..|-+. ..+++.+...+++++|..+-+..++--...|.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 34444444455555666666666665543 34556666777777777777766652111222
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHHc
Q 041384 404 ---TLISGYGFHGYGEEALQLFLEMQES 428 (580)
Q Consensus 404 ---~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (580)
-.-.+|.+.|+-.+|..+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2223455666666666666666543
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0023 Score=53.36 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHHhhC--CCCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-------------
Q 041384 287 RIIFERT--KVKDVVIWSSIIRGYSQ-----SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQ------------- 346 (580)
Q Consensus 287 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 346 (580)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444443 34566677777777654 477888888899999999999999999999988652
Q ss_pred ---CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 347 ---SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 347 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2456789999999999999999999999999977654
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.055 Score=43.90 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHH
Q 041384 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAA----RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP---DAITVL 438 (580)
Q Consensus 366 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~~~~ 438 (580)
|++..-..|..+..+.|+..+|...|++... .|....-.+.++....+++..|...++.+.+.. | ++.+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 3443334444444455555555555444333 244444444445555555555555555554431 2 112233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHH
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (580)
.+.+.+...|++..|..-|+..+. .-|+....-.....+.++|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555555555555555332 23343333334444555555544433
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.30 E-value=0.00065 Score=46.64 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHG-RLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 533 (580)
+..|..+...+...|++++|+..|++. ...| ++..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666777777777777777777766 2333 5567778888888888 68888888888888776
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.28 E-value=0.013 Score=44.94 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhh
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLG 481 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 481 (580)
+..++-..|+.++|+.+|++..+.|+.... ..+..+.+.+...|++++|..++++.+.+..-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666778888888888888887766543 4566677778888888888888888665322111 2222233445667
Q ss_pred hcCChHHHHHHHHh
Q 041384 482 KSGKIEDACKVVST 495 (580)
Q Consensus 482 ~~g~~~~A~~~~~~ 495 (580)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888776644
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.27 E-value=0.0017 Score=60.80 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTR----ILSSLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
...++.+..+|...|++++|+..|++. ...|+.. +|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555443 3344322 2455555555555555555555555554
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.26 E-value=0.00064 Score=48.06 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC---CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAE----PE---NAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+++.+...|...|++++|+..++++.+.. +. -..++..++.++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788888889999999999988887542 22 355688999999999999999999988754
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.27 Score=48.57 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=116.2
Q ss_pred CCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC--------chHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCee
Q 041384 126 VLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFEL--------SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEV 197 (580)
Q Consensus 126 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (580)
.|.+..|..+.......-+++.|+..|-+...-.+++. +.....+=+.+| -|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57888888888777777777777777665543222211 111112222222 3899999999988877764
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 041384 198 SWTAMISGCIDSQNYDTGIDLFRAMQRE-GVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMY 276 (580)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (580)
.|..+.+.|++-...++++.--.. +-..-...++.+...++....++.|.+.+..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 356677778887777766431100 0011134566777777777777777776654221 12344444
Q ss_pred HHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 041384 277 CECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVH 356 (580)
Q Consensus 277 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 356 (580)
.+... ++..+.+-...++ +....-.+...+...|.-++|.+.+-+-. .| ...+..|...+++.+|.++-
T Consensus 833 y~le~-f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 833 YRLEL-FGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHh-hhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 44444 4454444444443 44455566677777777777766554321 11 12345566666666666554
Q ss_pred H
Q 041384 357 C 357 (580)
Q Consensus 357 ~ 357 (580)
+
T Consensus 902 q 902 (1189)
T KOG2041|consen 902 Q 902 (1189)
T ss_pred H
Confidence 4
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0044 Score=56.44 Aligned_cols=257 Identities=12% Similarity=-0.010 Sum_probs=148.5
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHH--H--hCCCC-chhHHHHHHHH
Q 041384 307 GYSQSGDLSEAMKLFSRMRLERIEPNS----VTLLAILSSCTRQSFLSHGLGVHCYIM--K--AGLNF-DVSIGNALMNM 377 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~~ 377 (580)
-+|+.|+......+|+...+.| .-|. .+|..+-.+|...+++++|+++...=. . .|-+. .......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3677788888888888877776 2333 346666677777778888877654311 1 11000 11111223333
Q ss_pred hHhcCCHHHHHHHHhcCCC---------CCcchHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 041384 378 YSKCGSITSSHQIFNEMAA---------RDFVSWTTLISGYGFHGY--------------------GEEALQLFLEMQ-- 426 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~-- 426 (580)
+.-.|.+++|.-.-.+-.. .....+..+...|...|+ ++.|.+.|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555433221111 011233344455543331 233444443321
Q ss_pred --HcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH---HhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC---
Q 041384 427 --ESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVM---KEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM--- 496 (580)
Q Consensus 427 --~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 496 (580)
+.|-.. -...|..|...|.-.|+++.|+...+.-+ ++.|.... ...+..+..++.-.|+++.|.+.+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 212111 11346666677777889999987766422 23333322 456777888899999999999888754
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 497 ----P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE----AE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 497 ----~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+ ........-+|.+.|.-..+++.|+....+=+. ++ .....++.+|+.++...|..++|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 112344556777888777888889888776443 22 34666788999999999999999988766544
No 203
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.16 E-value=0.013 Score=46.70 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=49.1
Q ss_pred HHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 451 (580)
...+...|++++|..+|+-+.. .+..-|..|..++-..|++++|+..|....... +-|+..+-.+..++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 3344455666666666655443 133345555556666666666666666666542 124455555666666666666
Q ss_pred HHHHHHHHHHHh
Q 041384 452 EAETLFNNVMKE 463 (580)
Q Consensus 452 ~a~~~~~~~~~~ 463 (580)
.|.+.|+.++..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 204
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.11 E-value=0.074 Score=40.42 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=88.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHH
Q 041384 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (580)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+=+-..+.| ......++.+|+..|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc----
Confidence 4467788888888888763 4556667666666666666667777776322111111 1123344555554432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 490 CKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 490 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
+.......+..+...|+-++-.+++..+...+..+|.+..-++.+|.+.|+..++.+++.++=+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44456667788889999999999999998877889999999999999999999999999999888874
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.011 Score=52.70 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=50.0
Q ss_pred hhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhcCCh
Q 041384 481 GKSGKIEDACKVVSTMP-MKPST----RILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN---AANYTLLSMVCSESGNW 552 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 552 (580)
.+.|++++|...|+... ..|+. ..+..+...|...|++++|...|+.+.+..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44566666666666652 22332 344556666666666666666666666655543 33444455666666666
Q ss_pred HHHHHHHHHHHhCC
Q 041384 553 LGAEEVWRVMRAKG 566 (580)
Q Consensus 553 ~~A~~~~~~~~~~~ 566 (580)
++|..+++++.+..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666665543
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.4 Score=47.98 Aligned_cols=136 Identities=13% Similarity=0.018 Sum_probs=84.7
Q ss_pred HCCCCCCHhhHHH-----HHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcC---CHHHHHHHHhcCCC
Q 041384 122 LCGFVLKAELLAG-----IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCH---HWLIALRVFEQMVI 193 (580)
Q Consensus 122 ~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 193 (580)
.-|+..+..-|.. ++..+...+.+..|.++-..+...- .....++.....-+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 4567777666654 4677778888889988888764322 112566666666666653 33344455555544
Q ss_pred --CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 194 --RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREG----VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 194 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (580)
....+|..+.+.....|+++-|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 456678888888888999999988876422211 111233455566667777777777666655543
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.14 Score=43.63 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=47.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHH
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-------MKPST-RILSSLVSACRIHGRLEVAEMLAHQLIEAE----PENAANYT 540 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~ 540 (580)
+..+...|.+..++++|-..+.+-. ..|+. ..+...|-.+.-..|+..|+..++.-.+.. |.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3334455566666666555444331 11222 234444555555667777777777655432 55666666
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 041384 541 LLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~ 559 (580)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777666 667777766554
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.06 E-value=0.27 Score=45.95 Aligned_cols=448 Identities=13% Similarity=0.083 Sum_probs=229.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCC---ccchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 49 QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRD---TISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125 (580)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 125 (580)
++-+.+.+. |.|...|-.|+.-|...|..++..+++++|..|- ...|..-+.+=....++.....+|.+......
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444433 6788899999999999999999999999998663 44677777777777889999999998887644
Q ss_pred CCCHhhHHHHHHHhhccCCc------HHHHHHHHHHHHhCCCCC-chHHHhHHHHH---hHhcCCH------HHHHHHHh
Q 041384 126 VLKAELLAGIISLCSQIGEL------ELGRQIHALVIVDGSFEL-SVFVSTALLDL---YSKCHHW------LIALRVFE 189 (580)
Q Consensus 126 ~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~---~~~~~~~------~~a~~~~~ 189 (580)
+...|..-+.-..+.+.. ....+.++-.+.--.+.| +...|+..+.. .-..|.| |...+.+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 444555444433332211 112233333333111333 23334443332 2223333 34444454
Q ss_pred cCCC-C--C-------eehHHHHHHHHH-h------cCChhHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHhcCCC
Q 041384 190 QMVI-R--N-------EVSWTAMISGCI-D------SQNYDTGIDLFRAMQR--EGVKP----TRVTLTIVLLACAELRD 246 (580)
Q Consensus 190 ~~~~-~--~-------~~~~~~li~~~~-~------~~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~~ 246 (580)
++.. | | -..|..=++... + .--+-.|.+.++++.. +|+.. +..|++-+-+. .
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~----s- 260 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART----S- 260 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc----c-
Confidence 4422 1 1 011111111000 0 0012233444444332 12211 11222211110 0
Q ss_pred chhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHH
Q 041384 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV---KDVVIWSSIIRGYSQSGDLSEAMKLFSR 323 (580)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 323 (580)
...=....+.-.+.|+.....+...-|.. +++.... -....|-.--.-+...++-+.|+.....
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y-------------~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r 327 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHY-------------IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER 327 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHH-------------HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 00000111111222222222111111111 1111100 0112222222334455666677666554
Q ss_pred HHHCCCCCCHHHHHHHHHHhh-ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH---------hcCCHHHHHHHHhc
Q 041384 324 MRLERIEPNSVTLLAILSSCT-RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS---------KCGSITSSHQIFNE 393 (580)
Q Consensus 324 m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~ 393 (580)
-... .|+ .+..+.-|. -..+-+.....|+.... .|.+-|. ..|+++.-.+++-+
T Consensus 328 g~~~--sps---L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~k 391 (660)
T COG5107 328 GIEM--SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLK 391 (660)
T ss_pred cccC--CCc---hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHH
Confidence 3221 333 222233232 22333333333333221 0111110 01223222222221
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhH
Q 041384 394 MAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472 (580)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 472 (580)
-..+=...|..++..-.+....+.|..+|.+..+.| +.++...++.++.-++ .|+...|..+|+--+. .++.+..-
T Consensus 392 r~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y 468 (660)
T COG5107 392 RINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLY 468 (660)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHH
Confidence 112334567788888888888899999999999988 5667788888887554 6788899999997665 23333333
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP--MKPS--TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
-+..+.-+.+.++-+.|..+|+... +..+ ...|..++.--..-|+...+..+-+++.+..|....
T Consensus 469 ~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 469 KEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 4556677788999999999998652 2223 468888888888999999999998998888876433
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.06 E-value=0.0027 Score=51.51 Aligned_cols=70 Identities=24% Similarity=0.261 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCCc
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA-----KGLSKSYG 572 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 572 (580)
.....++..+...|++++|+..++++...+|.+...|..++.+|...|+..+|.+.|+++.+ .|+.|+|.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 34566777788999999999999999999999999999999999999999999999988743 47776654
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.05 E-value=0.28 Score=45.99 Aligned_cols=448 Identities=11% Similarity=0.062 Sum_probs=202.3
Q ss_pred CCCchhhHHHHHHHHHccCCCCCCCcch------HHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHH--H
Q 041384 3 SKHFYEQTLHLYKQELHPSGLYSNTAIL------PSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMY--A 74 (580)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~g~~~~~~~~------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 74 (580)
++++..+|.++| .+.... +..++..+ ..++.++- ..+. +.....+....+.- | ...|-.|..++ -
T Consensus 18 kq~~~~esEkif-skI~~e-~~~~~f~lkeEvl~grilnAff-l~nl-d~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 18 KQKKFQESEKIF-SKIYDE-KESSPFLLKEEVLGGRILNAFF-LNNL-DLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHhhhhHHHHHH-HHHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhH-HHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 568889999999 665443 12233333 34455554 3344 55555555555442 2 33444444443 5
Q ss_pred cCCCchHHHHhhccCCCC------------------CccchHHHHHHHHhCCChhHHHHHHHHHHHCCC----CCCHhhH
Q 041384 75 KFSKPESAYQLFDEMPYR------------------DTISWNSIINCFTQNGFYVRSLEMFREMYLCGF----VLKAELL 132 (580)
Q Consensus 75 ~~g~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~ 132 (580)
+.+.+..|.+.|...... |-..-+..+..+...|++.++..+++++.++=. ..+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667888888887654311 111224556777888888888888888766433 3677777
Q ss_pred HHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHh--cC
Q 041384 133 AGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID--SQ 210 (580)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~ 210 (580)
+.++-.+.+. .|-++.+......-.. |-.++-.|.+.=+.-++.. +++. .|.......++....- ..
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHh
Confidence 7755554432 2222222110111111 2222333322111111000 0000 0111111112211111 11
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 041384 211 NYDTGIDLFRAMQREGVKPTRVTL-TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289 (580)
Q Consensus 211 ~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 289 (580)
+..--.+++......-+.|+.... ..+...+.+ +.+++..+-+.+....
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~---------------------------- 289 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK---------------------------- 289 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh----------------------------
Confidence 122223333333333344443222 122222222 3333333322222111
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-------HHhh-c---cCChHHHHHHHHH
Q 041384 290 FERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL-------SSCT-R---QSFLSHGLGVHCY 358 (580)
Q Consensus 290 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-------~~~~-~---~~~~~~a~~~~~~ 358 (580)
.+...+.=+.++..++...++.++...|.+.+.-+.-- .|+...-..++ +..+ . ..+...-+.+|+.
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 00111112345667777778888888888777766533 33332211111 1111 1 1112222334444
Q ss_pred HHHhCCCCchhHHHHHH---HHhHhcCC-HHHHHHHHhcCCC---CCcchHHHHH----HHHHh---cCChHHHHHHHHH
Q 041384 359 IMKAGLNFDVSIGNALM---NMYSKCGS-ITSSHQIFNEMAA---RDFVSWTTLI----SGYGF---HGYGEEALQLFLE 424 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~ 424 (580)
.....+.- ......|+ .-+.+.|. -++|..+++.+.+ .|..+-|... ..|.. ...+.+-+.+-+-
T Consensus 368 ~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44333211 11111222 22334444 6667777776654 2332222211 11211 1233344444444
Q ss_pred HHHcCCCCCH----HHHHHHHHH--HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 041384 425 MQESGVEPDA----ITVLAILSA--CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM 498 (580)
Q Consensus 425 ~~~~g~~p~~----~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 498 (580)
+.+.|++|-. ..-+.|.++ +...|++.++.-.-..+. .+.|++.+|..+.-++....++++|..++..++
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 5566766622 333344433 455777777766555532 366777777777777777777777777777763
Q ss_pred CCCHHHHH
Q 041384 499 KPSTRILS 506 (580)
Q Consensus 499 ~p~~~~~~ 506 (580)
|+...++
T Consensus 523 -~n~~~~d 529 (549)
T PF07079_consen 523 -PNERMRD 529 (549)
T ss_pred -CchhhHH
Confidence 4544443
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.21 Score=44.35 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=39.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-H---HHHHHHHhhccCChHHHHHHHHHHHHhC
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSV-T---LLAILSSCTRQSFLSHGLGVHCYIMKAG 363 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 363 (580)
....+...|++++|...|+++...- |+.. . .-.+..++.+.++++.|...++...+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444567788888888888887653 3322 2 2345567778888888888888877743
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.0033 Score=43.68 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 478 DLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
..|.+.+++++|.++++.+ ...| ++..|......+.+.|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567788888888888877 3334 666777888888899999999999999999998877754443
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.038 Score=48.88 Aligned_cols=110 Identities=18% Similarity=0.096 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CHHHH
Q 041384 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG---KIEDACKVVSTM-PMKP-STRIL 505 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 505 (580)
+-|...|..|...|...|+.+.|..-|.+..+-.|-. +..+..+..++..+. ...++..+|+++ ..+| ++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3377899999999999999999999999977644443 445566666554333 467888999988 3444 77788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
..|...+...|++.+|...++.|.+..|++.. +..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 88888999999999999999999999988776 44443
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.022 Score=52.36 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=80.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
.++..+.-+|.+.+++.+|+...++. . .++|...+-.-..+|...|+++.|+..|+++++..|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35677888899999999999988877 3 456788888888999999999999999999999999999999999988777
Q ss_pred cCChHH-HHHHHHHHHhC
Q 041384 549 SGNWLG-AEEVWRVMRAK 565 (580)
Q Consensus 549 ~g~~~~-A~~~~~~~~~~ 565 (580)
...+++ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 766665 47888888653
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.98 E-value=0.009 Score=49.98 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----------------CCchhHHHHHHHHHHhcCCCchhHHHHHH
Q 041384 210 QNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL----------------RDLRNGKAIHGYAYCCGFDFDHHLSAALM 273 (580)
Q Consensus 210 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (580)
|..+=...-++.|.+-|+.-|..+|+.|++.+=+. .+-+-+..++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444455555555555555555555544331 12233555555555555555555555555
Q ss_pred HHHHHcCC
Q 041384 274 HMYCECTE 281 (580)
Q Consensus 274 ~~~~~~~~ 281 (580)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 55554433
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.092 Score=45.26 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHhcCChHHHHH
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAAN---YTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~ 557 (580)
+..-|.+.|.+..|..-++.+++..|+++.. ...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 5566889999999999999999999886554 6778889999999885543
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.017 Score=49.50 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=97.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHH----
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC---- 475 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 475 (580)
..-+.++..+.-.|.+.-....+.+.++...+-++.....|++.-.+.|+.+.|...|++.-+.. -..+...++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHh
Confidence 45566777777788888889999999987545577778888888899999999999999744433 2333333333
Q ss_pred -HHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 476 -YVDLLGKSGKIEDACKVVSTMP-MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 476 -l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
....|.-+.++.+|...++++. ..| ++...|.-.-...-.|+...|++.++.+.+..|.....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 3344566778889999998884 233 44444544444445788999999999999998874443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.12 Score=44.52 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHH
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--------MKPSTRILSSLVS 510 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~ 510 (580)
.++..+.-.|.+.-....+.++++ ...+.++.....|+..-.+.||.+.|...|++.+ .+-...+......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 334444444555555555555333 3333344444555555555555555555555331 1111122222223
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+.-++++..|...+.+..+.+|.++...+.-+-++.-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555555555555555555555555555555555443
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.69 Score=46.40 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH 515 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 515 (580)
+.+--+.-+...|+..+|.++-.+ . -.||...|..-+.+++..+++++-+++-+..+ ++.-|.-...+|.+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~-F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSD-F----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQ 757 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHh-c----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhc
Confidence 344445556667777777777665 2 24777777777888888888888877777664 245566677788888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
|+.++|...+-+.-. +...+.+|.+.|++.+|.+.-
T Consensus 758 ~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 888888777655422 225677788888888887653
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.45 Score=43.73 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=106.3
Q ss_pred HHHHHHHHHH--cCCCchHHHHhhccCC---CCCccchHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCHhh----HH
Q 041384 65 ISNSLISMYA--KFSKPESAYQLFDEMP---YRDTISWNSIIN--CFTQNGFYVRSLEMFREMYLCGFVLKAEL----LA 133 (580)
Q Consensus 65 ~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~ 133 (580)
.|.+|-.++. -.|+-..|.++-.+-. ..|....-.|+. +-.-.|+++.|.+-|+.|.. |+.| ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 3455555443 3466666666554432 234444434443 23346888888888888865 3333 23
Q ss_pred HHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcC-----CCCCeeh--HHHHHHHH
Q 041384 134 GIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQM-----VIRNEVS--WTAMISGC 206 (580)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~--~~~li~~~ 206 (580)
.|.-...+.|+.+.|++.-+.....- +.-...+...+...+..|+|+.|+++++.- .+++..- -..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 33333456778888877777766653 444566777778888888888888887754 2233221 11122111
Q ss_pred H---hcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCchhHHHHHHHHHHhcCCCc
Q 041384 207 I---DSQNYDTGIDLFRAMQREGVKPTRVTL-TIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265 (580)
Q Consensus 207 ~---~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (580)
. -.-+...|.+.-.+.. .+.||..-- .....++.+.|+..++-.+++.+-+....|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 237 AMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 1 1123444444433322 245554332 2334566777777777777777777665554
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.73 Score=45.77 Aligned_cols=170 Identities=9% Similarity=-0.023 Sum_probs=92.5
Q ss_pred CCChhHHHHHHHHHHcCCCchHHHHhhccCCC-CCccchH--------HH--HHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 041384 60 DADPVISNSLISMYAKFSKPESAYQLFDEMPY-RDTISWN--------SI--INCFTQNGFYVRSLEMFREMYLCGFVLK 128 (580)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--------~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~ 128 (580)
.|-+..|..|...-...-.++.|+..|-+... +...... .+ ...-.--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 57788888887777776777788777765431 1111100 01 111223578888888888776653
Q ss_pred HhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCC----chHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHH
Q 041384 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFEL----SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMIS 204 (580)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 204 (580)
..+....+.||+-...++++. |+-.. -...++.+.+.+.....|++|.+.+..-.. -...+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 234555566777666555432 21111 134677777777777777777777765422 123345
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHH
Q 041384 205 GCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252 (580)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 252 (580)
++.+...+++-..+...+. -+....-.+...+.+.|.-++|.+
T Consensus 831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHH
Confidence 5555555554444443332 233333344445555555544443
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.71 E-value=0.039 Score=52.20 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhcc---------CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh
Q 041384 414 YGEEALQLFLEMQE-SGVEPDA-ITVLAILSACNHA---------GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK 482 (580)
Q Consensus 414 ~~~~a~~~~~~~~~-~g~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (580)
..+.|+.+|.+... ..+.|+- ..|..+..++... .+..+|.++.+++++ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34567777777762 1245543 4555554443321 123334444444332 122334445555555555
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCChHHHHHH
Q 041384 483 SGKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN--YTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 558 (580)
.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++.+++|....+ ....++.|+. ...+.|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 66666666666666 24443 3344445555555666666666666666666653332 3333334443 334455554
Q ss_pred H
Q 041384 559 W 559 (580)
Q Consensus 559 ~ 559 (580)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.5 Score=43.45 Aligned_cols=243 Identities=14% Similarity=0.139 Sum_probs=152.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 041384 310 QSGDLSEAMKLFSRMRLERIEPNS--VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 310 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 387 (580)
-.|+++.|.+-|+.|... |.. -.+..|.-...+.|+.+.|.++-+..-... +.-.-...+.+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 457888888888887632 211 123334444456777777777776665543 22344556777888888888888
Q ss_pred HHHHhcCCC-----CCcc--hHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHH
Q 041384 388 HQIFNEMAA-----RDFV--SWTTLISGYG---FHGYGEEALQLFLEMQESGVEPDAI-TVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 388 ~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 456 (580)
+++++.-.. +++. .--.|+.+-. -.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 888876543 3332 1112222211 11245556655555554 577763 344556778999999999999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHhhhcCChHHH--HH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA--CK--VVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~--~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
++.+-+ ..|.+.++. ...+.+.|+.... .+ -+..|+ +.+..+...+..+....|++..|..-.+.+.+..
T Consensus 286 lE~aWK---~ePHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 286 LETAWK---AEPHPDIAL--LYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHh---cCCChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 998654 445554443 3345567764322 11 223332 3466777788888889999999998888888777
Q ss_pred CCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 041384 533 PENAANYTLLSMVCSES-GNWLGAEEVWRVMRAK 565 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (580)
|... +|..|+++-... |+-.++...+-+..+.
T Consensus 360 pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 7544 477888876555 9999999888776553
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.54 E-value=0.45 Score=41.03 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLERI--EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 362 (580)
....+...|++.+|...|+.+..... +-.....-.++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456778889999999999876631 112334556777888888888888888887774
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.52 E-value=0.071 Score=41.74 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHhc
Q 041384 478 DLLGKSGKIEDACKVVSTMP----MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN---YTLLSMVCSES 549 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 549 (580)
....+.|++++|.+.|+.+. ..| ....-..++.+|.+.|+++.|...+++.+++.|.++.+ +...+-++.+.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34456777777877777773 112 33455677888888899999999999999988776554 44444444444
Q ss_pred CC---------------hHHHHHHHHHHHhCC
Q 041384 550 GN---------------WLGAEEVWRVMRAKG 566 (580)
Q Consensus 550 g~---------------~~~A~~~~~~~~~~~ 566 (580)
.. ..+|..-|+++++.-
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 44 567777777776644
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.47 E-value=0.039 Score=49.75 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=69.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-----
Q 041384 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVVSTM-------PMKPS----- 501 (580)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~----- 501 (580)
.++..++...+.++++++.|+.+++-..-..| ..++..|...|.+..|.++|.-+..+. ..+.-
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666677777777766553222222 345666666677777766665554443 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
....-.|.-++...|....|.+.-+++.++. +........++++|-..|+.|.|..-++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1122344455666676666666666655432 334444566677777777777766666554
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.019 Score=52.77 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
..+++.+...+.+.+++..|++...+.++.+|+|...+..-+.+|...|+++.|+..|+++.+..+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 3467788888999999999999999999999999999999999999999999999999999886654
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.35 E-value=1.2 Score=43.75 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARD---FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS- 442 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~- 442 (580)
+...|..-+..-.+.|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+-- .|+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 34455555666666777777777777665541 1233334444444477777776666655542 233222222222
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----H
Q 041384 443 ACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDAC---KVVSTM-PMKPSTRILSSLVSA-----C 512 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~-----~ 512 (580)
-+...|+++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. .++... ..+-+......+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 234467888888888874432 2 43 222222344455677777666 333333 122222222222211 2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
.-.++.+.|..++.++.+..|++...|..++......+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 33467788888888888888888888888777766655
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.14 Score=45.88 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=96.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHH----HHHHHHhhhcCCh
Q 041384 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHY----ACYVDLLGKSGKI 486 (580)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 486 (580)
..|+..+|...++++.+. .+.|...+.-.-++|...|+...-...+++++. ...++...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345666666677777664 344556666666777777777777777777553 223443333 2344455677888
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 487 EDACKVVSTM-PM-KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE----NAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 487 ~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
++|++.-++. .+ +.|.-...++...+...|+++++.+++.+-...=.. -...|-+.+-.+.+.+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888777776 22 335555666667777778888877776664432111 12235556666777788888888876
Q ss_pred HHHhCCCccCCc
Q 041384 561 VMRAKGLSKSYG 572 (580)
Q Consensus 561 ~~~~~~~~~~~~ 572 (580)
+-+-..++++-+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444444433
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.24 E-value=0.047 Score=50.09 Aligned_cols=263 Identities=10% Similarity=-0.015 Sum_probs=120.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHhhccCCcHHHHHHHHHHHH----hCCCCCchHHHhHHHHH
Q 041384 103 CFTQNGFYVRSLEMFREMYLCGFVLKAE----LLAGIISLCSQIGELELGRQIHALVIV----DGSFELSVFVSTALLDL 174 (580)
Q Consensus 103 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~ 174 (580)
-+++.|+....+.+|+...+.|.. |-. .|..|-.+|.-.+++++|.+++..=+. .|.-.-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 456677777777777777666532 222 234444455555666666665443111 11001112223334444
Q ss_pred hHhcCCHHHHHHHHhc-C------CCC--CeehHHHHHHHHHhcCC--------------------hhHHHHHHHHHHH-
Q 041384 175 YSKCHHWLIALRVFEQ-M------VIR--NEVSWTAMISGCIDSQN--------------------YDTGIDLFRAMQR- 224 (580)
Q Consensus 175 ~~~~~~~~~a~~~~~~-~------~~~--~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~- 224 (580)
+--.|.+++|..+-.+ + ..+ ...++..+...|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445566665543221 1 000 11123333444443332 2334444433211
Q ss_pred ---cC-CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhh
Q 041384 225 ---EG-VKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVI 300 (580)
Q Consensus 225 ---~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 300 (580)
.| --.-...|..+-..|.-.|+++.+....+.-+.. +.++=++.. ....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i-------------------------a~efGDrAa--eRRA 237 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI-------------------------AQEFGDRAA--ERRA 237 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH-------------------------HHHhhhHHH--HHHh
Confidence 11 1112344555666666677888887766554321 111111000 1123
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----hCCCCchhH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRL----ER-IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-----AGLNFDVSI 370 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 370 (580)
+..+..++.-.|+++.|.+.|+.-.. .| -........++...|.-..++++|+.++..-.. ....-....
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44455555666666666666655321 11 111223344555555555666666666554332 112223455
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhc
Q 041384 371 GNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
+-+|..+|...|.-++|+.+.+.
T Consensus 318 cwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 56666666666666666655543
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.21 E-value=1.1 Score=42.13 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRIL-SSLVSA 511 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 511 (580)
..|..++....+....+.|..+|.++.+ .+ +.+++.++++++..++ .|+...|..+|+-- ..-||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4466677777788889999999999555 55 6788999999998765 67888899998765 333555444 666777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPEN--AANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+...|+-..|..+|+...+.-..+ ..+|..++..-..-|+...+..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 788999999999999777654333 66799999988889999888777666654
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.20 E-value=0.076 Score=41.16 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 429 GVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 429 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
...|+..+..+++.+|+..|++..|.++.+...+..+++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567788888888888888888888888888777777777777777777643
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.8 Score=44.20 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (580)
-++..+.+..+.+.+..+.+...+.++..|-.+++.+++.+.++...+...+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 35666777788888888888888888889999999998888666555444443
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.079 Score=40.14 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=47.1
Q ss_pred HhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHhcCCh
Q 041384 479 LLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENA---ANYTLLSMVCSESGNW 552 (580)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~~ 552 (580)
+++..|+++.|++.|.+. . .+.....||.-..++.-+|+.++|+.-++++.++. |... ..|..-+..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555666666655554 1 22355556666666666666666666666666544 2221 1244445555556666
Q ss_pred HHHHHHHHHHHhCC
Q 041384 553 LGAEEVWRVMRAKG 566 (580)
Q Consensus 553 ~~A~~~~~~~~~~~ 566 (580)
+.|..=|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666565554444
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.025 Score=39.83 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
++..+...+...|++++|++.++++.+
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666665544
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.07 E-value=0.88 Score=39.64 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAA---NYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.+.+-|.+.|.+..|..-++.+.+.-|..+. .+..+..+|...|..++|...-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3456678889999999999999988766444 4666777899999999888765544
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.47 Score=42.07 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=67.9
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILS---SLVSACRIHGRLEV 520 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~ 520 (580)
....|++.+|..+|..++.... -+....-.++.+|...|+.+.|..++..++..-...-+. .-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556777777777776554222 224445566777777777777777777775332222222 22233333333332
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
... +++-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 33344556777777777777777777777777766555444
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=0.059 Score=47.05 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEHYACYVDLLGKSGKIEDACKVVSTM----PMKP-STRILSSLV 509 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 509 (580)
.|+.-+. +.+.|++..|...|...++... -.-....+..|..++...|++++|..+|..+ +..| -+..+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 3455667777777777655221 1111334455677777777777777766655 1112 334555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 510 SACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 510 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
....+.|+.++|...|+++.+..|.++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666777777777777777777766554
No 239
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.91 E-value=2.5 Score=43.58 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=23.2
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 345 (580)
+...-.....+....|+.++|....+.+=..| ...+.....++..+.+
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQ 175 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHH
Confidence 44444555556666666665655555543333 2223334444444443
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.065 Score=50.65 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh----hHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI----EHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
+...+..+..+|...|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|+..+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446777777788888888888888887665 34553 34777888888888888888887776
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.87 E-value=1.4 Score=41.37 Aligned_cols=165 Identities=10% Similarity=0.002 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCCCChhHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGV--EP-DAITVLAILSACNH---AGLVKEAETLFNNVMKEKKIALAIEHYA 474 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (580)
+...++-+|....+++..+++.+.+..... .+ ....--...-++.+ .|+.++|++++..++. ....+++.++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHH
Confidence 344566678899999999999999987410 11 12222233445556 8999999999999554 45667788888
Q ss_pred HHHHHhhh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---H-HHHhcC----
Q 041384 475 CYVDLLGK---------SGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGR-LE---VAEMLA---H-QLIEAE---- 532 (580)
Q Consensus 475 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~---~-~~~~~~---- 532 (580)
.++..|.. ....++|+..|.+. ...|+..+--.++..+...|. ++ +..++- . .+.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877642 22478888888877 556665433223333333332 21 222222 1 111222
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
-.+-..+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355567789999999999999999999998763
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.13 Score=44.96 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPD----AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACY 476 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 476 (580)
|+.-+.. .+.|++..|...|...++. .|+ ...+-.|..++...|+++.|..+|..+.++.+-.|. ++.+-.|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5554444 4556688888888887775 332 245566777888888888888888887776655555 3677777
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 041384 477 VDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~ 496 (580)
..+..+.|+.++|..+|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 77888888888888888777
No 243
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=1.6 Score=40.79 Aligned_cols=84 Identities=13% Similarity=-0.028 Sum_probs=48.2
Q ss_pred hHhcCCHHHHHHHHhcCCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCC
Q 041384 378 YSKCGSITSSHQIFNEMAAR-------DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGL 449 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~ 449 (580)
..+.|.+..|.+.|.+...- +...|.....+..+.|+..+|+.--++..+. .|.. ..|..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665542 2234555555566677777777766666542 2211 222233334555677
Q ss_pred HHHHHHHHHHHHHh
Q 041384 450 VKEAETLFNNVMKE 463 (580)
Q Consensus 450 ~~~a~~~~~~~~~~ 463 (580)
|++|++-++.+++.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777776653
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.098 Score=42.34 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-----AGLNFDVSIGN 372 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 372 (580)
....++..+...|+++.|..+.+.+.... +.+...+..+|.++...|+...|.+.|+.+.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556777888999999999999998775 55778999999999999999999999998764 68999877543
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.66 Score=45.86 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHH-HHHHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTMPM------KPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
.+.+.|.++++.+.+ .-|+...|. .-.+.+...|++++|++.|++... +.....+--++..+....++++
T Consensus 247 ~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 355566666666433 223433332 223445556666666666665421 1122334455566677788888
Q ss_pred HHHHHHHHHhcCCCCchHHH-HHHHHHHhcCCh-------HHHHHHHHHHH
Q 041384 521 AEMLAHQLIEAEPENAANYT-LLSMVCSESGNW-------LGAEEVWRVMR 563 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~ 563 (580)
|...+.++.+.+.-+...|. ..+-++...|+. ++|.+++.+.-
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888877655444443 344456667777 77777777653
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.79 E-value=0.62 Score=35.66 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=46.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (580)
+....+..+..+..+|.-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33345556777888888888888888877543 778888888888899999988888888888877753
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.78 E-value=1.3 Score=39.18 Aligned_cols=191 Identities=19% Similarity=0.157 Sum_probs=86.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHh
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAA-----RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS-ACN 445 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~-~~~ 445 (580)
......+...+++..+...+..... .....+......+...+++..+...+.........+ ......... .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 3334444444444444444443321 122233334444444444555555555555432121 111111111 455
Q ss_pred ccCCHHHHHHHHHHHHHhhCC--CCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHH
Q 041384 446 HAGLVKEAETLFNNVMKEKKI--ALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPS--TRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~ 520 (580)
..|+++.|...+.+... ... ......+......+...++.+.+...+.+.. ..++ ...+..+...+...++++.
T Consensus 142 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 142 ELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 55556666655555422 110 0112222222333445555666665555552 2222 3445555555555556666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|...+.......|.....+..+...+...|.++++...+++...
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666655444445555554455556666655555444
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.60 E-value=0.13 Score=39.87 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHH
Q 041384 125 FVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDL 174 (580)
Q Consensus 125 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (580)
..|+..+..+++.+++..|++..|.++++...+.-+++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666666666666666666666666666665554455555556555543
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=0.94 Score=36.23 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
....++..+...+.+......++.+...+ ..+....+.++..|++.+ .......++. ..+.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456666666677777788888777765 356667777777777653 3444444442 12223334466666
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 481 GKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIH-GRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
.+.+-++++.-++.+++. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777777642 22222333333 677777777665 345666776666554
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=95.51 E-value=0.43 Score=38.47 Aligned_cols=86 Identities=10% Similarity=-0.010 Sum_probs=48.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCCh
Q 041384 408 GYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (580)
-+...|++++|..+|+-+.-. .| |..-+..|..+|-..+++++|+..|.....-. .-|+..+-....+|...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCH
Confidence 344566677777777666653 23 33444455555555677777777766543311 12233334456666666777
Q ss_pred HHHHHHHHhCC
Q 041384 487 EDACKVVSTMP 497 (580)
Q Consensus 487 ~~A~~~~~~~~ 497 (580)
+.|...|+...
T Consensus 122 ~~A~~~f~~a~ 132 (165)
T PRK15331 122 AKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHH
Confidence 76666666553
No 251
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.49 E-value=0.15 Score=44.40 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=78.1
Q ss_pred HHHHHHHHhhCC--CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--------
Q 041384 283 LHPARIIFERTK--VKDVVIWSSIIRGYSQ-----SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS-------- 347 (580)
Q Consensus 283 ~~~a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 347 (580)
+-..+..|.... +.|-.+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334455566555 4566677777766643 4567777778899999999999999999999886633
Q ss_pred --------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 348 --------FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 348 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
+-+-++.++++|...|+.||-.+-..|++++++.+-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 344578999999999999999999999999988765
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.9 Score=38.51 Aligned_cols=149 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCCh
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (580)
......|++.+|..+|....... +-+......+..++...|+.+.|..++..+-. .--.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~-~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL-QAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888877752 22446666777888888888888888886321 11111111122233444455544
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHH
Q 041384 487 EDACKVVSTMPMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 487 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
.+...+-++....| |...-..+...+...|+.+.|.+.+-.+.+.+ -.+...-..++..+.-.|.-+.+..
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 44444444443355 66666778888888899999888877777655 5577778888888877775554433
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.27 E-value=0.059 Score=30.32 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 505 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
|..+...+...|++++|++.++++.+++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444445555555555555555555555554
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.22 E-value=0.88 Score=44.98 Aligned_cols=116 Identities=19% Similarity=0.082 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHhhCCC--CChhHHHHHHHHhhhcCChHHH
Q 041384 413 GYGEEALQLFLEMQESGVEPDAITVLAI-LSACNHAGLVKEAETLFNNVMKEKKIA--LAIEHYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 489 (580)
...+.|.++++.+.+. .|+...|... .+.+...|+.++|++.|+++.....-- .....+.-+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3566677777777764 5665554433 334555777777777777644311111 1122344455566677777777
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHH--HHhcCCH-------HHHHHHHHHHHh
Q 041384 490 CKVVSTMP-MKPSTRILSSLVSA--CRIHGRL-------EVAEMLAHQLIE 530 (580)
Q Consensus 490 ~~~~~~~~-~~p~~~~~~~l~~~--~~~~~~~-------~~A~~~~~~~~~ 530 (580)
.+.|..+. .......+-..+.+ +...|+. ++|.++++++-.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777773 22223333223322 2345555 666666666543
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.086 Score=39.96 Aligned_cols=57 Identities=21% Similarity=0.054 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.-++...|+.+.|++.|.+.+..-|.++++|+.-+.++--+|+.++|..=+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999888764
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.06 E-value=0.052 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
+|..+...+...|++++|+..++++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555553
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.01 E-value=0.86 Score=43.67 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHH
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-MKP---STRILSSLVSACRIHGRLEVAEMLAHQLIEAE-PENAANY 539 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 539 (580)
-..+..++.+.|+.++|++.++++- ..| .......|+.++...+.+.++..++.+.-+.. |+++...
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 3446666667777777777777772 222 22355667777777777777777777765543 4555443
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.98 E-value=3.3 Score=44.34 Aligned_cols=138 Identities=16% Similarity=0.091 Sum_probs=62.9
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAE 454 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 454 (580)
++.-.+.|.+.+|..++..=.+.-...|.+...-+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334445555555544433222223444444444455555555555544322 112345555666666666
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041384 455 TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528 (580)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 528 (580)
.+..++-. +-.--..+-..|+.-+...++.-+|-++..+....|.. .+..+++...+++|.++....
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 66555211 11111112244555566666666666666555323221 122334444555555544443
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.95 E-value=2.9 Score=38.21 Aligned_cols=17 Identities=6% Similarity=-0.263 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q 041384 512 CRIHGRLEVAEMLAHQL 528 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~ 528 (580)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44667777777777654
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=94.92 E-value=1.9 Score=41.30 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=93.9
Q ss_pred CHHHHHHHHhcCC---CCC---cchHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 041384 383 SITSSHQIFNEMA---ARD---FVSWTTLISGYGFH---------GYGEEALQLFLEMQESGVEPDAITVLAILSACNHA 447 (580)
Q Consensus 383 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 447 (580)
..+.|..+|.+.. +-| ...|..+..++... ....+|.++.++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4577888888887 433 33455444443221 23456777777777754 44778888888877888
Q ss_pred CCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVST-MPMKPST---RILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~---~~~~~l~~~~~~~~~~~~A~ 522 (580)
++++.|...|+++. .+.|+ ...|......+.-.|+.++|.+.+++ +...|.. ......+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999854 35566 44555566666778999999999988 4556643 3344445566654 467777
Q ss_pred HHHHHH
Q 041384 523 MLAHQL 528 (580)
Q Consensus 523 ~~~~~~ 528 (580)
.++-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 777553
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.88 E-value=2.1 Score=41.12 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=69.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 041384 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM--KPST--RILSSLVSACR 513 (580)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~~~~~ 513 (580)
..+..++.+.|+.++|++.+.+++++........+...|+.+|...+.+.++..++.+... -|.. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3456667789999999999999887554333456778899999999999999999988741 2333 34554443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhcCCCCch
Q 041384 514 IHGR---------------LEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 514 ~~~~---------------~~~A~~~~~~~~~~~~~~~~ 537 (580)
..++ -..|.+.+.++.+.+|.-+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3333 13466788888887766544
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.79 E-value=0.46 Score=37.32 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPE---NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
-.....+.|++++|++.|+.+....|. ...+-..|+.+|.+.|++++|...++++++..+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 344455789999999999999998876 4456778999999999999999999999998764
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.75 E-value=0.75 Score=44.77 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=87.6
Q ss_pred HcCCCchHHHH------hhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHH
Q 041384 74 AKFSKPESAYQ------LFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELEL 147 (580)
Q Consensus 74 ~~~g~~~~A~~------~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 147 (580)
.-.|+++++.+ ++..++ ....+.++.-+-+.|..+.|+++..+-. .-+....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34567777433 333332 4456777777777888888877754322 22344556677777
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 041384 148 GRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGV 227 (580)
Q Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 227 (580)
|.++.+. ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 7766442 34666888888888888888888888877653 66677777778887777777666655532
Q ss_pred CCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 041384 228 KPTRVTLTIVLLACAELRDLRNGKAIHG 255 (580)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (580)
++....++.-.|+.++..+++.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445555566666555543
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.71 E-value=0.073 Score=30.54 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788889999999999999988854
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.44 Score=42.84 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=93.9
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHH----HHHHHHHHhcCCH
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRIL----SSLVSACRIHGRL 518 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~----~~l~~~~~~~~~~ 518 (580)
...|+..+|-..++++++ ..+.|...++..-+++.-.|+.+.....++++- -.||.+.| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356788888889999775 567788888888888999999888888888873 23444322 3444556788999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 519 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
++|++..+++.+++|.+.-+...++.++...|+..++.+..++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999999999999999999999999998765
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.51 E-value=1 Score=43.90 Aligned_cols=156 Identities=15% Similarity=0.034 Sum_probs=94.0
Q ss_pred HHhHhcCCHHHHHHHHh--cCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 041384 376 NMYSKCGSITSSHQIFN--EMAA-RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452 (580)
Q Consensus 376 ~~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 452 (580)
....-.++++++.+..+ ++.. -.....+.++.-+.+.|.++.|+++.+.-.. -.+...+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 34445677777655554 2221 1233467777777778888888775433211 1233456788888
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
|.++.++ .++...|..|.+...++|+++-|++.|++.. -+..|+-.|...|+.+.-.++.+.+...+
T Consensus 337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776544 2366688888888888999999998888875 45666667777888877777777776655
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
. ++....++.-.|+.++..+++.+
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 33334445566888888887765
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.51 E-value=1.5 Score=35.52 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=77.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHH--HHHhhhcCC
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY--VDLLGKSGK 485 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 485 (580)
+.+.+..++|+.-|..+.+.|...=+ .............|+...|...|.++-+...++.-..-...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667789999999998887644322 112223334567888899999999854432222111111111 224567788
Q ss_pred hHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 486 IEDACKVVSTMPMK--P-STRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 486 ~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
+++...-.+.+..+ | ....-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888777777322 2 334556777777888888888888888776
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.44 E-value=8.6 Score=41.40 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=27.4
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAARDFVSW---TTLISGYGFHGYGEEALQLFLEMQ 426 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~ 426 (580)
+.+|..+|++.+|+.+..++...-.... ..|+.-+...+++-+|-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3455555666666666665554322222 445555555666656655555544
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.41 E-value=4.8 Score=38.35 Aligned_cols=150 Identities=9% Similarity=-0.036 Sum_probs=79.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHh-hCCCCChhHH
Q 041384 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP---DAITVLAILSACNHAGLVKEAETLFNNVMKE-KKIALAIEHY 473 (580)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 473 (580)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-...+-..|+..+|...++..++. .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 33467777788888888888888888877643211 2333333445566778888888888776551 1111111111
Q ss_pred HHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 474 ACYVDLLGKSGKIEDACKV-VSTMPMKPSTRILSSLVSACRIH------GRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
..+...+.. ..+..... ........-...+..+..-+... ++.+++...++.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7788899999999999998888888887766
Q ss_pred Hhc
Q 041384 547 SES 549 (580)
Q Consensus 547 ~~~ 549 (580)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 553
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.33 E-value=0.1 Score=31.58 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
|.++..++.+|.+.|++++|+++++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 356889999999999999999999999887653
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.23 Score=41.02 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=67.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALA-----IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRILSSLVSACRI 514 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 514 (580)
.-+...|++++|..-|..++.. .++. ...|..-..++.+.+.++.|+.-..+. .+.|. ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4577889999999998887752 2332 223444455677778888887766655 33342 2333333456777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
...++.|++-|+++.+.+|....+-..++..
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7888888888888888888777665555544
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=0.31 Score=43.48 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
++..++..+...|+.+.+.+.++++ ... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555555555555555544 122 2444555555555555555555555555443
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=7.6 Score=39.68 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=74.1
Q ss_pred hHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 041384 165 VFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244 (580)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 244 (580)
..+...+++.+...|++++|-...-.|...+..-|...+..+...++......++ .......+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-
Confidence 3456667777777788888877777777777777777776666666655443332 221122345567767666655
Q ss_pred CCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 041384 245 RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM 324 (580)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 324 (580)
.+. ..+++...+. +++......++++ ...-+++..+ +...-..|+..|...+++..|+.++-..
T Consensus 468 ~~~---~~F~e~i~~W--p~~Lys~l~iisa----------~~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 SDV---KGFLELIKEW--PGHLYSVLTIISA----------TEPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHH---HHHHHHHHhC--ChhhhhhhHHHhh----------cchHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222 2222222221 1111111111111 1111111111 2222334788888899999998888776
Q ss_pred H
Q 041384 325 R 325 (580)
Q Consensus 325 ~ 325 (580)
+
T Consensus 532 k 532 (846)
T KOG2066|consen 532 Q 532 (846)
T ss_pred c
Confidence 5
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.14 E-value=0.8 Score=40.19 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=63.5
Q ss_pred CCCeehHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------------CchhHH
Q 041384 193 IRNEVSWTAMISGCID-----SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR----------------DLRNGK 251 (580)
Q Consensus 193 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 251 (580)
++|..+|-..+..+.. .+.++-...-++.|.+-|+.-|..+|..|+..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566666655543 2445555566777788888888888888887765432 234466
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 041384 252 AIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289 (580)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 289 (580)
.++++|...|+-||..+-..+++++++.+-......++
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 77788888888888877777777777766544444443
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.01 E-value=2.6 Score=33.69 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 041384 339 ILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381 (580)
Q Consensus 339 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (580)
++..+...+.......+++.+...+ ..++...+.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3333444444555555555555444 24444555555555543
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.87 E-value=0.13 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..+..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999987754
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=0.61 Score=37.46 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHh---hhcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 472 HYACYVDLL---GKSGKIEDACKVVSTMP-MKPSTRILS-SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 472 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+.+.|++.+ .+.++.+++..+++.+. ..|...... .-...+...|++.+|+++|+.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 445555443 46778889988888883 556554332 3344567889999999999998888888888888888888
Q ss_pred HhcCChH
Q 041384 547 SESGNWL 553 (580)
Q Consensus 547 ~~~g~~~ 553 (580)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 7777654
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=0.49 Score=37.25 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=41.2
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 041384 482 KSGKIEDACKVVSTMP-MKPSTRIL-SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
..++++++..+++.+. ..|+..-. ..-...+...|++.+|.++++.+.+..+..+..-..++.++.-.|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4566666666666662 34433222 122333456677777777777776666666665666666666666543
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.58 E-value=3.5 Score=33.77 Aligned_cols=135 Identities=12% Similarity=0.069 Sum_probs=70.8
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 041384 49 QLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128 (580)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 128 (580)
+.+..+.+.+++|+...+..+++.+.+.|++.....++..-.-+|.......+-.+.. ....+.++=-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk------ 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK------ 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH------
Confidence 4455555677888888888888888888887777766655443333332222221111 11222222222211
Q ss_pred HhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHh
Q 041384 129 AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCID 208 (580)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 208 (580)
++. ..+..+++.+...|++-+|.++.+.....+......++.+..+
T Consensus 87 -------------------------RL~---------~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 87 -------------------------RLG---------TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred -------------------------Hhh---------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 110 0123344455566666666666666544444455556666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 041384 209 SQNYDTGIDLFRAMQRE 225 (580)
Q Consensus 209 ~~~~~~a~~~~~~m~~~ 225 (580)
.++...-..+++-..++
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66655555555554443
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.56 E-value=3.4 Score=39.40 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP----ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
....+|..++..+++.|.++.|...+.++...++ ..+.+...-++.+...|+.++|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999887652 256667777888889999999999998887733
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.54 E-value=0.14 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888554
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.53 E-value=0.16 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+|..++.+|...|++++|++.+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 568999999999999999999999988754
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=20 Score=42.06 Aligned_cols=248 Identities=12% Similarity=0.039 Sum_probs=132.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH
Q 041384 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385 (580)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 385 (580)
.-....|++..|..-|+.+.+.+ ++...+++.++......+.++...-..+-.....-+-....++.-+.+-.+.++++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchh
Confidence 34556788888999999888664 33366777777777777777766654443333221111222233344446677777
Q ss_pred HHHHHHhcCCCCCcchHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCC--------C-HHHHHHHHHHHhccCCHHH
Q 041384 386 SSHQIFNEMAARDFVSWTTL--ISGYGFHG--YGEEALQLFLEMQESGVEP--------D-AITVLAILSACNHAGLVKE 452 (580)
Q Consensus 386 ~A~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~g~~p--------~-~~~~~~l~~~~~~~~~~~~ 452 (580)
....... ..+..+|... +..+.+.. +.-.-.+..+.+++.-+.| + ...|..++..+.-.. .+
T Consensus 1536 ~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~- 1610 (2382)
T KOG0890|consen 1536 LLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LE- 1610 (2382)
T ss_pred hhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HH-
Confidence 7766665 4444555544 22222222 2111222333333321121 0 022333333222110 01
Q ss_pred HHHHHHHHHHhhCCCCC------hhHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCC
Q 041384 453 AETLFNNVMKEKKIALA------IEHYACYVDLLGKSGKIEDACKVVSTM----PMKP-----STRILSSLVSACRIHGR 517 (580)
Q Consensus 453 a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~ 517 (580)
...+. ..++.++ ...|..-+..-....+..+-+--+++. ...| -..+|....+..+..|.
T Consensus 1611 --~~~~~---l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1611 --NSIEE---LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred --HHHHH---hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 11111 1122222 222222222212222223322222222 1122 24578899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 518 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
++.|...+-.+.+.+ -+.++...+..+...|+...|..++++..+..
T Consensus 1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999888887777 45667888899999999999999999988654
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=11 Score=39.01 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=81.1
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCch
Q 041384 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (580)
....+-+.+.|++++|...+-+-..--.. ..+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 33445556778888887776554322111 24566677777777777888888888763 5555667888888888888
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 041384 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325 (580)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 325 (580)
+-.++.+...+.....|..+ .+..+.+.+= .+.|..+-..... +......+ +-..+++++|++.+..+.
T Consensus 449 kL~efI~~~~~g~~~fd~e~---al~Ilr~sny-l~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCDKGEWFFDVET---ALEILRKSNY-LDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCCCcceeeeHHH---HHHHHHHhCh-HHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 77666655431111112221 2222222222 3333333222222 22222223 334577888888887763
No 285
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.27 E-value=1.2 Score=36.91 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
....|.+++|...++...+.+- .+.....-++++...|+-++|+.-|++....+
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3444555555554444322111 12223344455555555555555555554443
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.15 E-value=5.6 Score=34.89 Aligned_cols=218 Identities=21% Similarity=0.133 Sum_probs=140.7
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 041384 313 DLSEAMKLFSRMRLERIE-PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-GLNFDVSIGNALMNMYSKCGSITSSHQI 390 (580)
Q Consensus 313 ~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 390 (580)
....+...+......... .....+......+...+....+...+...... ........+......+...++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433211 12445555666666666666666666665543 3334445555555666666777777777
Q ss_pred HhcCCCC--Cc-chHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 391 FNEMAAR--DF-VSWTTLIS-GYGFHGYGEEALQLFLEMQESGVEP----DAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 391 ~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
+...... +. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7766552 21 22333333 67888999999999998855 333 234444444456778899999999998665
Q ss_pred hhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 463 EKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPS-TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 463 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
..+. ....+..+...+...++++.|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 --LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2223 46677788888889999999999988873 3444 455555666666777899999999999998887
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.96 E-value=1.7 Score=34.95 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=72.0
Q ss_pred HHHHHHHHHH---HhccCCHHHHHHHHHHHHHhhCCCCChhHHH-HHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 041384 434 AITVLAILSA---CNHAGLVKEAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTMP-MKPSTRILSSL 508 (580)
Q Consensus 434 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 508 (580)
..+.+.|+.. -...++.+.+..++..+. -..|...... .-...+.+.|++.+|+.+|+++. ..|....-..|
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445555544 456889999999999843 3455533222 23345678999999999999995 34555556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
+..|....+-..=....+++.+.++ ++.+ ..++..+........|.+
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~-d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGA-DPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCC-ChHH-HHHHHHHHHhccccchhh
Confidence 6666655444444555566666554 3332 234444445455444444
No 288
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.86 E-value=0.24 Score=27.78 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 505 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
|..+...|...|++++|...+++..+.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44444555555555555555555555544
No 289
>PRK09687 putative lyase; Provisional
Probab=92.50 E-value=8.2 Score=35.17 Aligned_cols=137 Identities=11% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCChhHHHH
Q 041384 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG-LVKEAETLFNNVMKEKKIALAIEHYAC 475 (580)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 475 (580)
++..+-...+.++.+.++ ..++..+-.+.+ .+|...-...+.++.+.+ +...+...+..++. .++..+...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444444555555554 345555555444 234444444444444432 12334444444332 234444555
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.+.++.+.|+. .|+..+-+.-..++ .....+.++...|+. +|+..+.++.+.+| |..+-....+++
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 55666666653 33333333311223 223455666666664 56666777666665 444444444443
No 290
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.35 E-value=9.1 Score=35.32 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC-------CCcc-----
Q 041384 338 AILSSCTRQSFLSHGLGVHCYIMKAG-----LNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-------RDFV----- 400 (580)
Q Consensus 338 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~----- 400 (580)
++-.++...+.++++++.|+...+.. ......++..|...|.+..+.++|.-+..+..+ .|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666677777877777766521 122355677777778777777776655443322 2322
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 401 -SWTTLISGYGFHGYGEEALQLFLEMQE----SGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 401 -~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
....|..++...|+...|.+.-++..+ .|-+|- ......+.+.|...|+.+.|..-|+.++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 222344556667777777776666543 233332 13344566677778888887777777554
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.10 E-value=9.6 Score=35.01 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CC----CchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHH
Q 041384 212 YDTGIDLFRAMQREGVKPTRVTLTIVLLACAE--LR----DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHP 285 (580)
Q Consensus 212 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 285 (580)
+++.+++++.|.+.|++-+..+|.+....... .. ....+..+++.|++.-+-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34566788899999998888887664443333 22 23456666666666533211
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCC----hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCC--hHHHHHHHH
Q 041384 286 ARIIFERTKVKDVVIWSSIIRGYSQSGD----LSEAMKLFSRMRLERIEPNS--VTLLAILSSCTRQSF--LSHGLGVHC 357 (580)
Q Consensus 286 a~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~ 357 (580)
.++-..+..++.. ..++ .+.++..|+.+.+.|+..+. ...+.++..+..... ..++.++++
T Consensus 138 ---------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 138 ---------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred ---------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1122233333322 2222 35677788888887766543 344455544433333 447888888
Q ss_pred HHHHhCCCCchhHHHHHH
Q 041384 358 YIMKAGLNFDVSIGNALM 375 (580)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~ 375 (580)
.+.+.|+++....|..+.
T Consensus 207 ~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHcCCccccccccHHH
Confidence 999999888877766554
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.85 E-value=0.38 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 540 TLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..++.++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444445555555555554444
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.85 E-value=4.4 Score=33.86 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhh--CCCCChhHHHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILSACNHAGLVKEAETLFNNVMKEK--KIALAIEHYACY 476 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l 476 (580)
.+..+..-|.+.|+.+.|++.|.++.+....|.. ..+..+++.....+++..+.....++-... +-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666777777777777777777766444433 345566667777777777777766632211 111111111111
Q ss_pred HH--HhhhcCChHHHHHHHHhC
Q 041384 477 VD--LLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 477 ~~--~~~~~g~~~~A~~~~~~~ 496 (580)
.. .+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 223466777777777665
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=6.8 Score=32.73 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHH
Q 041384 417 EALQLFLEMQESGVEPDAITVL--AILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDAC 490 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 490 (580)
+.....+.+....-....-++. .+...+...+++++|...++..+. .+.| ...--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455555565531111112222 233456778889999888887543 1122 111223556677889999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 491 KVVSTMPMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 491 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
..++....+- .......-.+.+...|+-++|...|+++.+.++
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 9998775221 222344456678899999999999999998873
No 295
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.78 E-value=7.4 Score=34.70 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+++.....|...|.+.+|.++-++++..+|-+...+-.+...+...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555667789999999999999999999999999999999999999998888888877643
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=1.9 Score=38.57 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=72.0
Q ss_pred hCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-Cc-----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 041384 362 AGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-DF-----VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI 435 (580)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 435 (580)
.|.+.+..+...++..-....+++.+...+-++... +. .+-...++.+. .-++++++.++..=+.-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 455555555566666666667777777777766642 11 11112222222 336788999988888999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKK 465 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 465 (580)
++..+++.+.+.+++.+|.++...++...-
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776443
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.22 E-value=7.1 Score=31.83 Aligned_cols=118 Identities=10% Similarity=0.078 Sum_probs=63.8
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHhccCC
Q 041384 378 YSKCGSITSSHQIFNEMAARDFVSWTTLI-----SGYGFHGYGEEALQLFLEMQESGVEPDAI-TVLAI--LSACNHAGL 449 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~l--~~~~~~~~~ 449 (580)
+.+.++.++|+.-|..+.+.+.-.|..|. ......|+...|...|++.-...-.|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34556667777777776666555555443 23455666777777777766542223221 11111 123445666
Q ss_pred HHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
++......+. +...+-+.-...-..|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvep-La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEP-LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhh-ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 6666666665 322333333334445555556677777777777665
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.08 E-value=0.37 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.087 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
.....++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777664
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.98 E-value=0.047 Score=44.01 Aligned_cols=85 Identities=13% Similarity=0.285 Sum_probs=61.6
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChh
Q 041384 32 SVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYV 111 (580)
Q Consensus 32 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 111 (580)
.+++.+...+.. ......++.+...+...+....+.++..|++.++.+...++++... ..-...++..+.+.|.++
T Consensus 12 ~vi~~~~~~~~~-~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQP-EELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-G-GGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHH
Confidence 345556666666 7777888888877766778899999999999988899999888433 244456777777777777
Q ss_pred HHHHHHHHH
Q 041384 112 RSLEMFREM 120 (580)
Q Consensus 112 ~a~~~~~~m 120 (580)
.+.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 777777665
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.96 E-value=0.38 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 505 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
+-.+..++.+.|++++|.+.++++.+..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4457788889999999999999999999874
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.90 E-value=13 Score=34.19 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 416 EEALQLFLEMQESGVEPDA--ITVLAILSACNHAGL--VKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++. +++.++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~-l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA-LKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH-HHHcCCccccccccHHHH
Confidence 5566777777777776633 333333333322222 4467777777 556788877766665543
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.87 E-value=0.63 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.72 E-value=8.2 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=19.7
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 041384 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAIL 340 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 340 (580)
++...+..++..+.+.|++. .+..+...++-+|+......+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 34444555555555555433 233444445555555544443
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.67 E-value=0.53 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888889999999988888765
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.61 E-value=13 Score=33.89 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHH
Q 041384 401 SWTTLISGYGFHGYG---EEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 476 (580)
+...++.+|...+.. ++|..+++.+... .|+ +..+..-+..+.+.++.+.+.+.+.+|+...+ .....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHH
Confidence 445566666665543 3455566666543 343 34555556666667788888888888776333 122233333
Q ss_pred HHHh---hhcCChHHHHHHHHhC---CCCCCHH-HHH-HHH---HHHHhcCC------HHHHHHHHHHHHhc--CCCCch
Q 041384 477 VDLL---GKSGKIEDACKVVSTM---PMKPSTR-ILS-SLV---SACRIHGR------LEVAEMLAHQLIEA--EPENAA 537 (580)
Q Consensus 477 ~~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~-~l~---~~~~~~~~------~~~A~~~~~~~~~~--~~~~~~ 537 (580)
+..+ .... ...|...++.+ ...|... ... .++ ....+.++ .+...++++.+.+. .|-++.
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3333 3222 33444444444 1233222 111 111 11122222 34444445533332 233333
Q ss_pred H---HHH----HHHHHHhcCChHHHHHHHHHH
Q 041384 538 N---YTL----LSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 538 ~---~~~----l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+ ... -+..+++.++|++|.+.++-.
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3 222 244567899999999998754
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=11 Score=32.80 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+..+.+.+.+...+.+|-..+.+-.... +.--..+...+-+|....++..|...++.--.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 34455567777788877766655543221 33333466666677778899999988876433
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.50 E-value=20 Score=35.69 Aligned_cols=120 Identities=18% Similarity=0.100 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSA- 511 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~- 511 (580)
.+|...++--...|+.+.+.-+|+..+- ....-...|-..+.-....|+.+-|..++.... ..|+......+-.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5666666666777777777777776432 111223345555555555677777776666552 22222222222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
+-..|+++.|..+++...+.-|....+-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 233567777777777777666665555555555556677777666
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.46 E-value=17 Score=34.94 Aligned_cols=127 Identities=7% Similarity=0.011 Sum_probs=83.0
Q ss_pred HHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC---CCeehHHHHHHHHHhcCCh
Q 041384 136 ISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI---RNEVSWTAMISGCIDSQNY 212 (580)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 212 (580)
|.-....||+-.|-+-+...++.-+-.|+.. ......+...|+++.+...+..... ....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 3334456777766555555554431334433 3334456778999999998877633 3666778889999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCc
Q 041384 213 DTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265 (580)
Q Consensus 213 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (580)
+.|..+-.-|....+. +...........-..|-++++...|+++...+.+.+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999999988877654 333333333334455778888888888876554433
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.43 E-value=10 Score=32.27 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
+|..|++.+...|+.++|..+|+-.+
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35556666666666666666665443
No 310
>PRK09687 putative lyase; Provisional
Probab=90.43 E-value=14 Score=33.75 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG-KIEDACKVVSTMPMKPSTRILSSLVSA 511 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~ 511 (580)
+..+-...+.++.+.++ ..+...+-.+++ .++..+-..-+.++.+.+ +..++...+..+-..++..+-...+.+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 44444455555555554 334444444343 233334444444444432 133444444444335555555556666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+.+.|+ ..|+..+-+..+.+. .....+.++.+.|.- +|...+.++.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 666555 344444444433221 234455555566653 45555555554
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.39 E-value=0.91 Score=41.01 Aligned_cols=100 Identities=14% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHG 516 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 516 (580)
-.+-|.++|.+++|+..|...+. ..| +..++..-..+|.+..++..|+.=.+... ...-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999998664 334 66666667778888888876665444432 1111223444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
...+|.+-++.++++.|.+...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 88888888899999999866543333
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.31 E-value=10 Score=32.21 Aligned_cols=164 Identities=14% Similarity=0.039 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcc-hHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAARDFV-SWTTLIS--GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
+.+||-+.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+...-.. .|+...-...+-.-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--DPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 567777777778889999999999888775442 2322222 233457888888777776654 33222111111112
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH-HhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCC
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD-LLGKSGKIEDACKVVSTMPM------KPSTRILSSLVSACRIHGR 517 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~~ 517 (580)
...-++.+|..-+.+-. ...+..-|...+- .|.-.=..+.+.+-...-.. +.=..+|.-+.+-+...|+
T Consensus 177 E~k~dP~~A~tnL~qR~----~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 EQKLDPKQAKTNLKQRA----EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HhhCCHHHHHHHHHHHH----HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 23446666665554411 1233333433332 22211112222222211110 0113567778888999999
Q ss_pred HHHHHHHHHHHHhcCCCCch
Q 041384 518 LEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 518 ~~~A~~~~~~~~~~~~~~~~ 537 (580)
.++|..+|+-+...+.-|-.
T Consensus 253 ~~~A~~LfKLaiannVynfV 272 (297)
T COG4785 253 LDEATALFKLAVANNVYNFV 272 (297)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 99999999999887654433
No 313
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.04 E-value=0.63 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 540 TLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888888999999999988888654
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.04 E-value=6.6 Score=37.55 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=71.1
Q ss_pred HHhcCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChH
Q 041384 409 YGFHGYGEEALQLF-LEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487 (580)
Q Consensus 409 ~~~~~~~~~a~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (580)
....|+...|-+-+ ..++...-.|+...... ..+...|+++.+.+.+..+ + .-+.....+...+++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~-~-~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDV-E-KIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhch-h-hhhcCCchHHHHHHHhhhchhhHH
Confidence 34456666555443 33444322333333322 3345678888887777763 2 233445556777777777788888
Q ss_pred HHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 488 DACKVVSTMP-MK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 488 ~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
+|...-.-|. .+ .++.............|-++++...++++..++|+.
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877776662 11 233333333344455677778888888888777653
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.00 E-value=3.9 Score=32.39 Aligned_cols=93 Identities=10% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHHHH---HhccCCHHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHH
Q 041384 434 AITVLAILSA---CNHAGLVKEAETLFNNVMKEKKIALA---IEHYACYVDLLGKSGKIEDACKVVSTMPMKP-STRILS 506 (580)
Q Consensus 434 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~ 506 (580)
....+.|++. -...++.+++..++..+- -+.|. ..++. ...+...|++.+|+++|++....+ ....-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~k 81 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGK 81 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHH
Confidence 3444555543 345889999999999843 34454 44443 345678999999999999996443 444444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcC
Q 041384 507 SLVSACRIH-GRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 507 ~l~~~~~~~-~~~~~A~~~~~~~~~~~ 532 (580)
.|...|... ||. .=......+.+.+
T Consensus 82 AL~A~CL~al~Dp-~Wr~~A~~~le~~ 107 (153)
T TIGR02561 82 ALLALCLNAKGDA-EWHVHADEVLARD 107 (153)
T ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhC
Confidence 555445443 433 3333344444433
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.91 E-value=1.5 Score=37.09 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHH
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA---ANYTLLSM 544 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 544 (580)
+.+..+..+.+.+.+++|+...+.- +.+| |...-..++..+|-.|++++|..-++-+-+..|... ..|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566777888888888877654 4455 556677788888999999999888888888877643 34555554
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.47 E-value=11 Score=31.68 Aligned_cols=92 Identities=17% Similarity=0.050 Sum_probs=54.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHh
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPDA-----ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLL 480 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 480 (580)
.-+...|++++|..-|.+.++. ++|.. ..|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 4466778888888888887775 33322 2233333456677777777777766554 3333 11222234466
Q ss_pred hhcCChHHHHHHHHhC-CCCCCH
Q 041384 481 GKSGKIEDACKVVSTM-PMKPST 502 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~~p~~ 502 (580)
.+...+++|+.=|.++ ...|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 7777777777777666 344543
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.40 E-value=2.6 Score=30.32 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
.-++.+-++.+....+.|++......+++|.+.+++..|.++++- ++ .....+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~-vK-~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEA-IK-DKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-HH-HHccCchhhHHHHHH
Confidence 335556667777777899999999999999999999999999997 44 122224445665553
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.37 E-value=4.3 Score=36.45 Aligned_cols=77 Identities=8% Similarity=0.085 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----hCCCCchhHHHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-----AGLNFDVSIGNAL 374 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 374 (580)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667778888888888888888888764 55777888888888888888888888887765 6788887766555
Q ss_pred HHH
Q 041384 375 MNM 377 (580)
Q Consensus 375 ~~~ 377 (580)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 320
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.22 E-value=0.54 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=21.2
Q ss_pred HHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHH
Q 041384 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIAL 185 (580)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (580)
++.++.. |.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 667777888888888888877775
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.20 E-value=3.3 Score=29.83 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
..-|++....+.+++|++.+|+..|+++++-....-..+...|..+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 46799999999999999999999999999988865544445565554
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.96 E-value=2.4 Score=30.90 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
+..+-++.+....+.|++......+++|.+.+++..|.++++-+....+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555666677777899999999999999999999999999998433333 33436776664
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.75 E-value=3.7 Score=29.96 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
-.-|++.+..+.+++|++.+|+..|+++++-+...-.+....|..+++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 467999999999999999999999999999998766554446666553
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.72 E-value=1.3 Score=36.26 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 519 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
++|+.-|++++.++|+...++..++.+|...
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555443
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.71 E-value=13 Score=31.45 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=53.7
Q ss_pred hhhcCChHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHhcCCh
Q 041384 480 LGKSGKIEDACKVVSTMPMKP---STRILSSLVSACRIHGRLEVAEMLAHQLIEAE----PENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 552 (580)
..+.|+ ++|.+.|-.++..| ++.....|+ .|....|.++++.++-+++++. ..|+.++..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 56777777764333 334444444 4445678999999999999875 33789999999999999999
Q ss_pred HHHH
Q 041384 553 LGAE 556 (580)
Q Consensus 553 ~~A~ 556 (580)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.32 E-value=35 Score=35.53 Aligned_cols=233 Identities=6% Similarity=-0.122 Sum_probs=104.1
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 041384 311 SGDLSEAMKLFSRMRLER-IEPNSV--TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS 387 (580)
Q Consensus 311 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 387 (580)
..+.+.|..++....... ..+... ....+.......+..+++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344566777776653332 222221 22222222222222444544444433221 2333334444444566777777
Q ss_pred HHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHHHHh
Q 041384 388 HQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA-ETLFNNVMKE 463 (580)
Q Consensus 388 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 463 (580)
...+..|... ...-..-+..++...|+.++|...|+.+.. ..+ .|..|... +.|..-.- .........
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~- 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDS- 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCchhh-
Confidence 7777666541 222333455565556777777777776532 111 22222211 11110000 000000000
Q ss_pred hCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHH
Q 041384 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PENAANYT 540 (580)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~ 540 (580)
.+... .--.-+..+...|+...|...+..+....+......+.....+.|..+.++....+....+ -.-|..|.
T Consensus 404 -~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 -ALTQG--PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred -hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00000 0112234556678888888777766434555555666666667777777776665443211 01122344
Q ss_pred HHHHHHHhcCChHHHH
Q 041384 541 LLSMVCSESGNWLGAE 556 (580)
Q Consensus 541 ~l~~~~~~~g~~~~A~ 556 (580)
..+..+.+.-.++.+.
T Consensus 481 ~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 481 DEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 4444444444455444
No 327
>PRK10941 hypothetical protein; Provisional
Probab=88.18 E-value=3.6 Score=36.95 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..+.+-.+|.+.++++.|+++.+.+....|+++.-+...+-+|.+.|.+..|..=++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566677888888888888888888888888888888888888888888888777776644
No 328
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.51 E-value=19 Score=31.67 Aligned_cols=73 Identities=12% Similarity=0.027 Sum_probs=46.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 041384 307 GYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (580)
.-.+.|++++|...|+.+..+. -+-...+...++.++.+.++.+.|....++..+.-......-|...|.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3457788999999998887653 122345566667777788888888888888777433333333444444443
No 329
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.06 E-value=2.8 Score=30.30 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCCh
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE--NAANYTLLSMVCSESGNW 552 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 552 (580)
|......+...+...|+++.|.+.+-.+.+.++. +...-..++.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4445555555566666666666666666555533 344455555555555543
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.85 E-value=19 Score=35.91 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=21.2
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+-|.+.
T Consensus 649 ~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 445555555544431 12233555555555555555555555443
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.71 E-value=8.7 Score=32.14 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHHHH
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS--VTLLAILSSCTRQSFLSHGLGVHCYIMK 361 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 361 (580)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|..+.-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35777888999999999999999999887655544 3466778888888888888888777665
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=2 Score=38.53 Aligned_cols=102 Identities=6% Similarity=0.026 Sum_probs=72.6
Q ss_pred hCCCCChhHHHHHHHHHHcCCCchHHHHhhccCC-CCC-----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 041384 57 SGSDADPVISNSLISMYAKFSKPESAYQLFDEMP-YRD-----TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAE 130 (580)
Q Consensus 57 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 130 (580)
.|.+.+..+...++..-....+++.+...+-++. .|+ ..+-.+.++.+. .-++++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3455566666666666666778888888776665 221 112222333333 346778888888888889999999
Q ss_pred hHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 041384 131 LLAGIISLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 131 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
+++.+|+.+.+.+++..|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887765
No 333
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.00 E-value=2 Score=27.16 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
.+.-++.+.|++++|.+..+.+++..|.|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566788999999999999999999999988543
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.85 E-value=1.9 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+..++.++...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555555555555555443
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=3.2 Score=35.69 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.=+-.+.+.++++.+..--.++++..|+.......++........+++|+..+++.
T Consensus 49 nralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 49 NRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33334445555666666666666666666666666666666666666666666555
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.49 E-value=2.1 Score=25.11 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
.+++.+...|...|++++|+.+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888887753
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.10 E-value=11 Score=37.39 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHH
Q 041384 76 FSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALV 155 (580)
Q Consensus 76 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 155 (580)
.|+++.|-.++-.++++ ..+.+++.+-++|..++|+++- +|+.-- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 45566665555555422 3334444444555555555431 122111 12223445555555544331
Q ss_pred HHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 041384 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFR 220 (580)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (580)
.+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHH
Confidence 2333455555555555555555555554322 3344444444444443333333
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.72 E-value=53 Score=34.11 Aligned_cols=65 Identities=12% Similarity=-0.007 Sum_probs=42.8
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCc-------HHHHHHHHHHHHh
Q 041384 93 DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL-------ELGRQIHALVIVD 158 (580)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~ 158 (580)
|...-=.+|-.+.+.|++++|.++..+.... .......|...+..+....+. +....-+++..+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3334445788899999999999999665543 556677888889988876432 2444555555444
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.71 E-value=0.72 Score=37.06 Aligned_cols=53 Identities=9% Similarity=0.121 Sum_probs=30.1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHh
Q 041384 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFN 392 (580)
Q Consensus 340 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 392 (580)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455555666666666666655545556666666666666655555555555
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.38 E-value=14 Score=27.02 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 041384 45 HFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCG 124 (580)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 124 (580)
++|.-+-+++...+-. ...+--.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+.+..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 7777777777665422 222222334557888999999999999999999998887663 5666666666677776665
Q ss_pred CCCCHhhH
Q 041384 125 FVLKAELL 132 (580)
Q Consensus 125 ~~~~~~~~ 132 (580)
.|....|
T Consensus 99 -~p~lq~F 105 (115)
T TIGR02508 99 -DPRLQTF 105 (115)
T ss_pred -CHHHHHH
Confidence 3333333
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.20 E-value=56 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=25.9
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 041384 196 EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL 244 (580)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 244 (580)
...| ++|-.|.+.|++++|.++..+.... .......+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3344 3455667777777777777444332 344445566666666554
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.18 E-value=2.2 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
..+..+...+...|+++.|...+++..+..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988765
No 343
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.15 E-value=20 Score=28.62 Aligned_cols=91 Identities=10% Similarity=0.149 Sum_probs=63.0
Q ss_pred HHHhCCCCChh--HHHHHHHHHHcCCCchHHHHhhccCC---------CCCccchHHHHHHHHhCCC-hhHHHHHHHHHH
Q 041384 54 ALKSGSDADPV--ISNSLISMYAKFSKPESAYQLFDEMP---------YRDTISWNSIINCFTQNGF-YVRSLEMFREMY 121 (580)
Q Consensus 54 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 121 (580)
|.+.+..++.. ..|+++.-....+++....++++.+. ..+..+|++++.+..+... --.+..+|..|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444442 44677777777777777777777664 2356678888888866555 345678888888
Q ss_pred HCCCCCCHhhHHHHHHHhhccCC
Q 041384 122 LCGFVLKAELLAGIISLCSQIGE 144 (580)
Q Consensus 122 ~~~~~~~~~~~~~ll~~~~~~~~ 144 (580)
+.+.++++.-|..++.++.+...
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Confidence 87888888888888888776533
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.77 E-value=25 Score=29.80 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=56.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH---hCCCCchhHHHHHHHHhHhcCCH
Q 041384 308 YSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK---AGLNFDVSIGNALMNMYSKCGSI 384 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 384 (580)
..+.|+ +.|...|-.+...+.--++.... .+..|....+.+++.+++....+ .+-.+|+..+.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 67888888887777554444444 44445557888899988888776 33367888889999999888888
Q ss_pred HHHH
Q 041384 385 TSSH 388 (580)
Q Consensus 385 ~~A~ 388 (580)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 345
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.55 E-value=56 Score=33.45 Aligned_cols=249 Identities=14% Similarity=0.072 Sum_probs=135.1
Q ss_pred HHhCCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 041384 308 YSQSGDLSEAMKLFSRMRL-------ERIEPNSVTLLAILSSCTRQS-----FLSHGLGVHCYIMKAGLNFDVSIGNALM 375 (580)
Q Consensus 308 ~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 375 (580)
+....+.+.|+..|+.... .|.++ ....+..+|.+.. +.+.|..++....+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 4456677888888877765 44222 3344444554432 56678888888877773 4433332222
Q ss_pred HHhHh-cCCHHHHHHHHhcCCCC-CcchHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 041384 376 NMYSK-CGSITSSHQIFNEMAAR-DFVSWTTLISGYG----FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449 (580)
Q Consensus 376 ~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 449 (580)
..... ..+...|.++|...... ....+-.+...|. ...+...|..++.+.-+.| .|-...-...+..+.. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22222 24567888888876653 3333333333332 2347788888888888877 4443332333333444 66
Q ss_pred HHHHHHHHHHHHHhhCCCCChhHHHHHHHHh---hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCH
Q 041384 450 VKEAETLFNNVMKEKKIALAIEHYACYVDLL---GK----SGKIEDACKVVSTMPMKPSTRILSSLVSACRIH----GRL 518 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~ 518 (580)
++.+.-.+.. .+..+.......-..+.... .. ..+.+.+...+.+...+-+......+...|..- .++
T Consensus 413 ~~~~~~~~~~-~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 413 YDTALALYLY-LAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred ccHHHHHHHH-HHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCCh
Confidence 6665555554 22233332222111122111 11 224556666666665455555555555554332 357
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 041384 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSES---GNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 519 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 566 (580)
+.|...+.++.... +.....++..+-.. ..+..|.+++++..+.+
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 77888888777766 66666666655332 12677888887776643
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.35 E-value=15 Score=26.78 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 041384 144 ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223 (580)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 223 (580)
..++|..|-+.+...+ .....+-.+-+..+...|++++|..+.+.+..||...|-+|... +.|-.+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 4566777777766554 22333444455667888999999999999988898888776543 5666677777777776
Q ss_pred HcCCCCCHHHHH
Q 041384 224 REGVKPTRVTLT 235 (580)
Q Consensus 224 ~~~~~p~~~~~~ 235 (580)
..|- |...+|.
T Consensus 96 ~sg~-p~lq~Fa 106 (115)
T TIGR02508 96 ASGD-PRLQTFV 106 (115)
T ss_pred hCCC-HHHHHHH
Confidence 6653 4444443
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.11 E-value=7.2 Score=30.31 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHhhhcCC---hHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 467 ALAIEHYACYVDLLGKSGK---IEDACKVVSTMP--MKPS--TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
.++..+--.+..++.+..+ ..+.+.+++++- -.|+ ....--|.-++.+.++++.++++.+.+++..|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 5666666667777776655 445566776662 2232 2234455667788888888888888888888887763
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.60 E-value=6.5 Score=35.85 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=57.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (580)
-..-|.+.|.+++|+..|.+.... .| |++++..-..+|.+..++..|..=...++. . -...+.+|.+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHH
Confidence 466789999999999999998874 67 889998888999999999888877776543 1 13355666665
Q ss_pred CChHHHHHHH
Q 041384 484 GKIEDACKVV 493 (580)
Q Consensus 484 g~~~~A~~~~ 493 (580)
+.-.+++...
T Consensus 172 ~~AR~~Lg~~ 181 (536)
T KOG4648|consen 172 MQARESLGNN 181 (536)
T ss_pred HHHHHHHhhH
Confidence 5444443333
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.93 E-value=37 Score=29.53 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=15.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
...+++.+|+.+|++.....-+|+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchH
Confidence 4556777777777777665544433
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.92 E-value=4.4 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMV 545 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
|+.+.|..+++++....|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888888877653
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.41 E-value=48 Score=29.91 Aligned_cols=143 Identities=13% Similarity=-0.006 Sum_probs=67.8
Q ss_pred HHHHhCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHhhccCCcH-H----HHHHHHHHHHhC-CCCCchHHHhHH
Q 041384 102 NCFTQNGFYVRSLEMF----REMYLCGFVLKAELLAGIISLCSQIGELE-L----GRQIHALVIVDG-SFELSVFVSTAL 171 (580)
Q Consensus 102 ~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~----a~~~~~~~~~~~-~~~~~~~~~~~l 171 (580)
..+.+.++...|.++- +-+.+.+++++......++..+...+.-+ . ..+...+- +.+ ...-|......+
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~ 96 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLL 96 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHH
Confidence 3455566655544443 33334566666666566655554443211 1 22223333 222 133467788889
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHH
Q 041384 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGK 251 (580)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 251 (580)
...|.+.|++.+|...|-.-..++...+-.++......|...++ |...-. .+--|...++...|.
T Consensus 97 a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 97 AEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLCLGNLRDAN 161 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHHTTBHHHHH
T ss_pred HHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHHhcCHHHHH
Confidence 99999999999998877554433333332233333333333222 111112 223355567777777
Q ss_pred HHHHHHHHh
Q 041384 252 AIHGYAYCC 260 (580)
Q Consensus 252 ~~~~~~~~~ 260 (580)
..+....+.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666544
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.96 E-value=5 Score=27.74 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=18.7
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHH
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACK 491 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 491 (580)
...+.++|+..|..+++...-+++ -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554442222222 1223334444444444444433
No 353
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.88 E-value=23 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 520 VAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 520 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.+..+|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8889999988755 66888899999999999999999999886
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.78 E-value=51 Score=29.85 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChH
Q 041384 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-----RDFVSWTTLISGYGFHGYGE 416 (580)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 416 (580)
.++..+...++..+++.+++..-.++++.... .|...|..+|......|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 44444445555555555555555555554332 24455555555555555543
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.73 E-value=47 Score=29.46 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=130.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh-----CCCCchhH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLE---RI--EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA-----GLNFDVSI 370 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 370 (580)
.-.++..+.+.+++++.+..|++|..- .+ .-+..+.+.++.....+.+.+.-..+++.-.+. +-..=-.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344667777888888888888777421 11 234456677777777777766666666543331 10111112
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCCC--------C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAAR--------D-------FVSWTTLISGYGFHGYGEEALQLFLEMQESG-VEPDA 434 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~ 434 (580)
-+.|...|...|++.+..+++.++... | ...|..-|..|...++-.+-..++++...-. --|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 245667788888888888888877541 1 1356667778887777777777777665421 23444
Q ss_pred HHHHHHHHHH-----hccCCHHHHHHHHHHHHHhh---CCCCCh--hHHHHHHHHhhhcCC----hHHHHHHHHhCCCCC
Q 041384 435 ITVLAILSAC-----NHAGLVKEAETLFNNVMKEK---KIALAI--EHYACYVDLLGKSGK----IEDACKVVSTMPMKP 500 (580)
Q Consensus 435 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p 500 (580)
.... +++-| .+.|.+++|-.-|-++.+.. |.+-.. --|-.|...+.+.|- -++|.. .+..|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 4333 34433 56788888865555546532 222222 224455566666551 111110 01335
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
.......|+.+|.. ++..+-+++++.-.+.--.+|.+
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHH
Confidence 55666788888854 56666666555443333334443
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.71 E-value=24 Score=26.16 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=51.1
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 041384 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (580)
....++|..|.+.+...+ .....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|--+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 345678888888887776 3344445555666788888888855555556677777766543 467777777777777
Q ss_pred HHHcC
Q 041384 222 MQREG 226 (580)
Q Consensus 222 m~~~~ 226 (580)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.62 E-value=89 Score=32.58 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=29.8
Q ss_pred hcCChhHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHh--cCCCchhHHHHHHHHH
Q 041384 208 DSQNYDTGIDLFRAMQREG---------VKPTRVTLTIVLLACA--ELRDLRNGKAIHGYAY 258 (580)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 258 (580)
+.+.++++.+.++.+.... -.|...++..+++.++ ..|+++.+...++.+.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455667777776664321 1345566666666553 4566667766665554
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.56 E-value=21 Score=30.95 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CC----CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 504 ILSSLVSACRIHGRLE-------VAEMLAHQLIEAE--PE----NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
.+..+.+.|...|+.+ .|.+.|+++.+.. |. ...+...++....+.|++++|.+.|.++...+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4555666777777744 4555555555443 22 34567788889999999999999999988765433
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.18 E-value=18 Score=31.48 Aligned_cols=56 Identities=9% Similarity=-0.045 Sum_probs=31.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 510 SACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 510 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
..+...|++-++++--..++...|.|..+|..-+.+.+..=+..+|..=|+..++.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33444555555666666666666666666666665555555555555555555443
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.13 E-value=51 Score=29.56 Aligned_cols=199 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
+.+-..+.+++++|+..+.++...|+..+..+. ..-..+...+...|...|+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----------------------------nEqE~tvlel~~lyv~~g~ 60 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----------------------------NEQEATVLELFKLYVSKGD 60 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----------------------------hHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHhcCCC--------CCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHhccCC
Q 041384 384 ITSSHQIFNEMAA--------RDFVSWTTLISGYGFHG-YGEEALQLFLEMQESGVEPDAITVLA-----ILSACNHAGL 449 (580)
Q Consensus 384 ~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~-----l~~~~~~~~~ 449 (580)
...-.+......+ +......+|+.-+.... .++..+.+.....+-..+-+...... ++..+.+.|.
T Consensus 61 ~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~ 140 (421)
T COG5159 61 YCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK 140 (421)
T ss_pred cchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCHHHHHHHHHH--HHhcC
Q 041384 450 VKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVVSTMP-------MKPSTRILSSLVSA--CRIHG 516 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~--~~~~~ 516 (580)
+.+|+.+...++.+..--.| ...+-.=-.+|-...++.++..-+.... .+|....-.-|+.+ .|...
T Consensus 141 YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~ 220 (421)
T COG5159 141 YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDR 220 (421)
T ss_pred HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccc
Q ss_pred CHHHHHHHHHHHHh
Q 041384 517 RLEVAEMLAHQLIE 530 (580)
Q Consensus 517 ~~~~A~~~~~~~~~ 530 (580)
++..|-..|-++.+
T Consensus 221 dyktA~SYF~Ea~E 234 (421)
T COG5159 221 DYKTASSYFIEALE 234 (421)
T ss_pred cchhHHHHHHHHHh
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.12 E-value=1.6 Score=39.71 Aligned_cols=85 Identities=18% Similarity=0.069 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTR-ILSSLVSACRIHGRLEVAEM 523 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~ 523 (580)
..|.++.|++.|...++ --++....|..-..++.+.++...|++=+... .+.||.. -|-.-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 44555555555555332 11222333333344444555555555444433 2333321 22222223333455555555
Q ss_pred HHHHHHhcC
Q 041384 524 LAHQLIEAE 532 (580)
Q Consensus 524 ~~~~~~~~~ 532 (580)
.+..+.+++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555544
No 362
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.53 E-value=56 Score=31.45 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=31.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHHHH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDAI--TVLAILSACN--HAGLVKEAETLFNNVMK 462 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 462 (580)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33566777777777777765 444443 3334444443 35567777777776443
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.87 E-value=53 Score=28.60 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 041384 516 GRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~ 534 (580)
.|.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4445555556666666654
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.81 E-value=19 Score=27.54 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
.+-|++.....-+++|.+.+|+..|.++++-....-++...+|-.++
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46799999999999999999999999999998876655444555554
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.78 E-value=8.7 Score=26.59 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=32.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHH---HHHHHHHhcCChHHHHHH
Q 041384 514 IHGRLEVAEMLAHQLIEAEPENAANYT---LLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~ 558 (580)
..++.++|+..++.+++..++.+.-|. .++.+|...|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887766555544 455567778888887776
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.49 E-value=85 Score=30.73 Aligned_cols=192 Identities=13% Similarity=0.010 Sum_probs=90.1
Q ss_pred ccCCCCCCCcc--hHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCCchHHHHhhccCCCC--
Q 041384 19 HPSGLYSNTAI--LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPV--ISNSLISMYAKFSKPESAYQLFDEMPYR-- 92 (580)
Q Consensus 19 ~~~g~~~~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 92 (580)
...|..|+... -.+.|..++..++. + +.+.+.+.|..|+.. ....-+...+..|+.+.+..+++.-...
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~-~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 96 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDS-E----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCH-H----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccc
Confidence 34566655432 34445555556665 4 444555566555432 1123344556778888877777654321
Q ss_pred --CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCc---h
Q 041384 93 --DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL--LAGIISLCSQIGELELGRQIHALVIVDGSFELS---V 165 (580)
Q Consensus 93 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 165 (580)
+..-.+ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.| ..++ .
T Consensus 97 ~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g-~~~~~~d~ 166 (413)
T PHA02875 97 VFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHK-ACLDIEDC 166 (413)
T ss_pred cccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcC-CCCCCCCC
Confidence 111222 33333445554 44555556665554321 123344445566665544443 333 2222 1
Q ss_pred HHHhHHHHHhHhcCCHHHHHHHHhcCCCCCee---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 041384 166 FVSTALLDLYSKCHHWLIALRVFEQMVIRNEV---SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT 230 (580)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 230 (580)
.-. +-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..++
T Consensus 167 ~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 167 CGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 122 2233445556666666666554333221 1123344344455543 3344445565554
No 367
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.96 E-value=83 Score=30.36 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=15.9
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcCCC
Q 041384 169 TALLDLYSKCHHWLIALRVFEQMVI 193 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (580)
+.++.-|...|+..+|.+..+++..
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC
Confidence 3455566667777777777666644
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.91 E-value=6 Score=23.87 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=13.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 041384 100 IINCFTQNGFYVRSLEMFREMYLC 123 (580)
Q Consensus 100 li~~~~~~~~~~~a~~~~~~m~~~ 123 (580)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555555555555555555543
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.60 E-value=18 Score=26.35 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHHHHhcCC----CC-----chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 514 IHGRLEVAEMLAHQLIEAEP----EN-----AANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+.||+..|.+.+.+..+... .. ......++......|++++|.+.+++.++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556555555554443221 11 12233455555566666666666665543
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.52 E-value=49 Score=27.52 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 518 LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 518 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+++|...|+++.+.+|.|......|- .. .+|-++..++.+.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe-~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE-MA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH-HH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH-HH------HhhHHHHHHHHHHHh
Confidence 56777777788888888887444443 22 246666666655543
No 371
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.16 E-value=87 Score=30.23 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=17.8
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHH
Q 041384 97 WNSIINCFTQNGFYVRSLEMFREMY 121 (580)
Q Consensus 97 ~~~li~~~~~~~~~~~a~~~~~~m~ 121 (580)
-|-++..|...|+..+|.+..+++.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~ 241 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELG 241 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhC
Confidence 4556677778888877777777664
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.07 E-value=95 Score=30.64 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
|....-+++..+..+..+.-+..+-.+|..-| .+...|..++.+|... ..+.-..+|+.+.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445567777777777777778888887663 4566777778877776 556667777777765532 3333344444
Q ss_pred HhHhcCCHHHHHHHHhcC
Q 041384 377 MYSKCGSITSSHQIFNEM 394 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~ 394 (580)
.|-+ ++.+.+...|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4444 6666666666554
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.26 E-value=18 Score=25.73 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHH
Q 041384 47 GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSL 114 (580)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 114 (580)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5667888888874 333444444433346688999999999988 88888888898888877655443
No 374
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=1.2e+02 Score=31.59 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhc
Q 041384 63 PVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141 (580)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 141 (580)
......+|.-+.-.|++++|-...-.|...+..-|..-+..+...+....... -+.....+.++..|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 34566677777777888888777777776777777766666666655543322 23333333556666666666554
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.03 E-value=8.4 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
....++-++.+.|++++|.++.+.+++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4567788899999999999999999886543
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.64 E-value=26 Score=34.78 Aligned_cols=84 Identities=18% Similarity=0.076 Sum_probs=44.0
Q ss_pred cCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 041384 483 SGKIEDACKVVSTM-PMKP--STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 483 ~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
.|+...|.+.+... ...| .......|.....+.|-...|-.++.+.+.+....|-++..++++|....+++.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45555555555444 2222 22233444455555555555555555555555555555555666666666666666666
Q ss_pred HHHHhCC
Q 041384 560 RVMRAKG 566 (580)
Q Consensus 560 ~~~~~~~ 566 (580)
+...+..
T Consensus 700 ~~a~~~~ 706 (886)
T KOG4507|consen 700 RQALKLT 706 (886)
T ss_pred HHHHhcC
Confidence 5555443
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.22 E-value=1.6e+02 Score=32.49 Aligned_cols=254 Identities=7% Similarity=-0.097 Sum_probs=116.5
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCch
Q 041384 289 IFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDV 368 (580)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 368 (580)
+...+..+++.+-...+..+.+.+..+ +...+..... .++...-...+.++...+........+..+.+. +|.
T Consensus 626 L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~ 698 (897)
T PRK13800 626 LAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDP 698 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCH
Confidence 333344555555555555555555433 3333333332 233333333333333322111111222222221 344
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 041384 369 SIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448 (580)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 448 (580)
.+-...+.++...+.- ....+...+..+|...-...+.++...+..+. +..... .++...-.....++...+
T Consensus 699 ~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 699 VVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 4444445555433211 12234444555666555556666655544321 122221 455555555556665555
Q ss_pred CHHH-HHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 449 LVKE-AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 449 ~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
..+. +...+..+++ .++...-...+.++...|..+.+...+..+...++..+-...+.++...+.. ++...+..
T Consensus 771 ~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~ 845 (897)
T PRK13800 771 AGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALVE 845 (897)
T ss_pred cccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHHH
Confidence 4332 2333333232 2445566666777777776554433343333355655556666666666542 34444444
Q ss_pred HHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 528 LIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 528 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+.+ .++..+-...+.++.+.+.-..+...+..+.+
T Consensus 846 ~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 432 33455555666666554333455555555544
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.92 E-value=16 Score=36.13 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=75.9
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEM 523 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~ 523 (580)
..|+...|...+..++.......++. ...|...+.+.|-..+|-.++... . ..-.+.++..+.+++.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 47888999998888665333333332 445677777888888888877655 2 23445677788899999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHH
Q 041384 524 LAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
.|+++.+..|+++.+-..|..+-+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999998887766544
No 379
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.87 E-value=97 Score=29.37 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=66.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCC------CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chH
Q 041384 474 ACYVDLLGKSGKIEDACKVVSTMPMKP------ST--RILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN-------AAN 538 (580)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 538 (580)
..|.+.+..+|++++|..++.+.+... .. ....--++.|.-.+|+-.|.-+.+++....-++ ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346677788899999998888874221 11 111222456778889999988888887654222 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 041384 539 YTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (580)
|..++....+.+.|-.+-+.++..-..|..+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 77788888888899999999988877664433
No 380
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=70.30 E-value=95 Score=29.04 Aligned_cols=81 Identities=16% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhCC---CCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 451 KEAETLFNNVMKEKKI---ALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 451 ~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
+.|.+.|+..+..... ..++.....+.....+.|+.++-..+++.....++...-..++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 4455555554432111 2333344444444555555444444444443344555555555555555555555555555
Q ss_pred HHhc
Q 041384 528 LIEA 531 (580)
Q Consensus 528 ~~~~ 531 (580)
+...
T Consensus 227 ~l~~ 230 (324)
T PF11838_consen 227 LLSN 230 (324)
T ss_dssp HHCT
T ss_pred HcCC
Confidence 5553
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.14 E-value=1.2e+02 Score=30.05 Aligned_cols=171 Identities=9% Similarity=0.084 Sum_probs=80.5
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
|.....+++..++...++.-+..+-.++.. .+...|..++.+|... ..+.-..+|+++.+. .-|......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 333444555555555555555555555443 3445566666666666 345566666666654 22333333222222
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCC------hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALA------IEHYACYVDLLGKSGKIEDACKVVSTMP----MKPSTRILSSLVSACRI 514 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~ 514 (580)
...++.+.+..+|.+++. .+.|. ...|..|...- ..+.+....+..++. ...-...+..+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 333566666666666443 12221 11233332211 223444444443332 11222333444445555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
..++++|+++++.+++.+..|..+.-.++.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 666677777776666666555544444443
No 382
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.03 E-value=9 Score=32.89 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=33.5
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 480 LGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
..+.|+.+.|.+++.+. ...| +...|..+...-.+.|+++.|.+.+++..+++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34556666666666555 2223 4455655555556666666666666666666665544
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.59 E-value=38 Score=25.18 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=50.7
Q ss_pred cchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 041384 41 QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120 (580)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 120 (580)
... ++|..+.+++...+. -...+--..+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 20 HcH-~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCH-QEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-H-HHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 344 889999999888764 222232333455788899999966666666788888877655 4677777777777777
Q ss_pred HHCC
Q 041384 121 YLCG 124 (580)
Q Consensus 121 ~~~~ 124 (580)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 384
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.17 E-value=75 Score=27.42 Aligned_cols=56 Identities=20% Similarity=0.051 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (580)
.+.-++.+.+.+..++++...++-++. +| |..+-..++..++-.|+|++|..-++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 444566677777778888777776665 34 556666777777788888888777665
No 385
>PRK12798 chemotaxis protein; Reviewed
Probab=68.92 E-value=1.1e+02 Score=29.37 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHhcCCCC----CcchHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCCHH
Q 041384 381 CGSITSSHQIFNEMAAR----DFVSWTTLISGY-GFHGYGEEALQLFLEMQESGVEPDAIT----VLAILSACNHAGLVK 451 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~g~~p~~~~----~~~l~~~~~~~~~~~ 451 (580)
.|+.++|.+.+..+... ....|-.|+.+- ....++.+|+++|+..+-. -|.... ..--+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 47777777777766642 333455555543 3445788888888887653 554432 333334456788888
Q ss_pred HHHHHHHHHHHhhCCCCChhHHH-HHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYA-CYVDLLGKSG---KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
++..+-..-++.....|-..-|. .+...+.+.+ ..+.-..++..|.-.-....|..+.+.-.-.|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87777666555555555543333 2333333333 3445555666664233445788888888888999988888888
Q ss_pred HHhcCCCCc----h--HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 528 LIEAEPENA----A--NYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 528 ~~~~~~~~~----~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+..+...+. . .|... +-.-..++++|.+.++.+-...
T Consensus 283 A~~L~~~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~ 325 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGA--ALVASDDAESALEELSQIDRDK 325 (421)
T ss_pred HHHhccCCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhh
Confidence 887652211 1 12222 2233556777777776654433
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.70 E-value=38 Score=26.07 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 418 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
..+-++.+..-.+.|++......+++|.+.+++..|.++|+- ++ ....+....|..++ ++-..++++++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~-iK-~K~g~~k~~Y~y~v---------~elkpvl~ELG 136 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEA-IK-DKCGAQKQVYPYYV---------KELKPVLNELG 136 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHH-HH-HhcccHHHHHHHHH---------HHHHHHHHHhC
Confidence 344455666667899999999999999999999999999998 54 23333333455554 34445555554
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.88 E-value=24 Score=26.59 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=24.6
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 485 KIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 485 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
+++++.+.+.+-. -|..|+..|...|..++|++++.+..+
T Consensus 28 ~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3444544444332 466677777777777777777777665
No 388
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.86 E-value=85 Score=27.56 Aligned_cols=20 Identities=30% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~ 459 (580)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33344444555555555443
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.86 E-value=2.8e+02 Score=33.56 Aligned_cols=105 Identities=17% Similarity=0.093 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCC--------CHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKP--------STRI 504 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--------~~~~ 504 (580)
.+|....+.....|.++.|...+-.+.+ .+ .| ..+-..++.+...|+...|+.++++.- ..| .+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e-~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE-SR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 5677777777778888888877766444 22 23 345556777888888888888887651 111 1222
Q ss_pred HHHHHHH--------H-HhcCC--HHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 505 LSSLVSA--------C-RIHGR--LEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 505 ~~~l~~~--------~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
-|..+.. | ...|+ .+..+..+.++.+..|.....+..++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222222 1 12333 24556677777777776555555555
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.60 E-value=1.6e+02 Score=30.69 Aligned_cols=111 Identities=6% Similarity=-0.024 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhCCCCCch--HHHhHHHHHhH-hcCCHHHHHHHHhcCC----CCCee-----hHHHHHHHHHhcCChhHH
Q 041384 148 GRQIHALVIVDGSFELSV--FVSTALLDLYS-KCHHWLIALRVFEQMV----IRNEV-----SWTAMISGCIDSQNYDTG 215 (580)
Q Consensus 148 a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~a 215 (580)
|.+.++.+.+...++|.. .++-.+...+. ...+++.|+..+++.. +++.. .-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555433244433 34555666655 5677888888877651 11111 1224455565555544 7
Q ss_pred HHHHHHHHHc----CCCCCHHHHHHH-HHHHhcCCCchhHHHHHHHHHH
Q 041384 216 IDLFRAMQRE----GVKPTRVTLTIV-LLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 216 ~~~~~~m~~~----~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 259 (580)
...+++..+. +..+-...|..+ +..+...++...|.+.++.+..
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~ 167 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQ 167 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777776553 111222233333 2222223677777777666554
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.37 E-value=42 Score=23.91 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHH
Q 041384 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTG 215 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 215 (580)
..|+.+.|.+++..++ +....|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5555666666666666554443
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.78 E-value=1.8e+02 Score=31.01 Aligned_cols=216 Identities=15% Similarity=0.043 Sum_probs=114.5
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHH-HhHhcCCHHHHHHHHhcCCC--------CCcchHHHHH
Q 041384 343 CTRQSFLSHGLGVHCYIMKAGLNFDVS-------IGNALMN-MYSKCGSITSSHQIFNEMAA--------RDFVSWTTLI 406 (580)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~ 406 (580)
.....++.+|..+..++...-..|+.. .++.+-. .....|+++.|.++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888877776633232211 2222211 22346888888877665443 2556777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHH--HHHhccCC--HHHHHHHHHHHHHhhCCCC-----ChhHHH
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPDAITVL---AIL--SACNHAGL--VKEAETLFNNVMKEKKIAL-----AIEHYA 474 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~---~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~ 474 (580)
.+..-.|++++|..+.....+..-.-+...+. .+. ..+..+|. +.+....+...-....... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887766542223333222 222 23555673 3333333333211111111 123333
Q ss_pred HHHHHhhhcCChHHHHHHHHhC----C-CCCCH--HH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHH---H
Q 041384 475 CYVDLLGKSGKIEDACKVVSTM----P-MKPST--RI--LSSLVSACRIHGRLEVAEMLAHQLIEAEPEN--AANY---T 540 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~----~-~~p~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~---~ 540 (580)
.+..++.+ .+.+..-.... . ..|.. .. +..|+......|+.++|...++++......+ ...| .
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 33332222211 1 22322 22 2366777788999999999999988765222 1111 1
Q ss_pred HHH--HHHHhcCChHHHHHHHHH
Q 041384 541 LLS--MVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 541 ~l~--~~~~~~g~~~~A~~~~~~ 561 (580)
..+ ..-...|+.++|...+.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222 223457899888887766
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.44 E-value=18 Score=32.61 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 041384 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWR 560 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (580)
+.|+.++|..+|+.+..+.|.++.++..++......++.-+|-+++-
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 44555555555555555555555555555554444444444444443
No 394
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.36 E-value=1.7e+02 Score=30.51 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=102.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchh
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSV----------TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVS 369 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 369 (580)
+-..++-.|-...+++...++.+.+..- ||.. .|.-.+.---+.|+-++|+...-.+.+..-+..+.
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 3444555666667777777777776533 3221 12222222234566666666655555532222221
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhc
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAI---TVLAILSACNH 446 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---~~~~l~~~~~~ 446 (580)
+||-+|+ +|+.|- +-+.|...+..+.|.++|++.-+ +.|+.. .+..|+.+-.+
T Consensus 280 -------m~Cl~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 280 -------MYCLCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred -------eeeeech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 2333332 122211 11223344556778888888776 477653 34444433221
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
.++.-.++-.- | -.|-..+++.|.+++..++|+-.. .+.+-.-++|+.+|.+..+
T Consensus 336 --~Fens~Elq~I-----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 336 --HFENSLELQQI-----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred --hccchHHHHHH-----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHHH
Confidence 12222221111 1 123445678888888888886431 2333445788999999999
Q ss_pred HHHhcCCCCchHHHHHHH
Q 041384 527 QLIEAEPENAANYTLLSM 544 (580)
Q Consensus 527 ~~~~~~~~~~~~~~~l~~ 544 (580)
.|.++.|+....-..+..
T Consensus 391 ~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 391 MMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHhccCCceehHHHHHHH
Confidence 999999887765544433
No 395
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.01 E-value=67 Score=25.69 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=52.2
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcC---------CCCCeehHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041384 169 TALLDLYSKCHHWLIALRVFEQM---------VIRNEVSWTAMISGCIDSQN-YDTGIDLFRAMQREGVKPTRVTLTIVL 238 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (580)
+.++.-....+.+.....+++.+ ...+...|+.++.+..+..- ---+..+|+-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444444445555555555444 12356678888888866655 345677888888888888999999999
Q ss_pred HHHhcCCCc
Q 041384 239 LACAELRDL 247 (580)
Q Consensus 239 ~~~~~~~~~ 247 (580)
.++.+....
T Consensus 123 ~~~l~g~~~ 131 (145)
T PF13762_consen 123 KAALRGYFH 131 (145)
T ss_pred HHHHcCCCC
Confidence 888775433
No 396
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.90 E-value=92 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCCch
Q 041384 520 VAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 520 ~A~~~~~~~~~~~~~~~~ 537 (580)
.|++...++.+-+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466777777777776555
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.60 E-value=27 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 499 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
.|++.++..++.++...|+.++|.+...++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555555555555555
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.04 E-value=44 Score=26.65 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=45.1
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
.+.|.++.+-|+ ...............|++.-|.++.+.+...+|+|.......+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345555555554 3334444556667889999999999999999999999999998888776643
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.82 E-value=64 Score=29.01 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHh----
Q 041384 100 IINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY---- 175 (580)
Q Consensus 100 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 175 (580)
=|++++..+++.+++...-+--+.--+.-+.....=|-.|.+.++...+.++-..-.+.. -..+..-|.+++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHHH
Confidence 367788888888777665554332212222333333445667777766666655544432 122222244444333
Q ss_pred -HhcCCHHHHHHHH
Q 041384 176 -SKCHHWLIALRVF 188 (580)
Q Consensus 176 -~~~~~~~~a~~~~ 188 (580)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 3446666666555
No 400
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.48 E-value=1.4e+02 Score=29.17 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCChhH--HHHHHHHHHcCCCchHHHHhhccCCCCCcc--chHHHHHHHHhCCChhHHHHHH
Q 041384 50 LHCTALKSGSDADPVI--SNSLISMYAKFSKPESAYQLFDEMPYRDTI--SWNSIINCFTQNGFYVRSLEMF 117 (580)
Q Consensus 50 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~ 117 (580)
+++.+.+.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 3444555676665432 233444556677777666666543333221 1123344555667766554444
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.58 E-value=1.2e+02 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 041384 303 SIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIM 360 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 360 (580)
.....|..+|.+.+|.++-+....-+ +.+...+-.++..+...|+--.+..-++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33455666677777776666665443 4455556666666666666555554444443
No 402
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=63.51 E-value=69 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 520 VAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 520 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+..++|..|.+.+ ..-+..|...+..+...|++.+|.++++.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3577888887765 55777788899999999999999998863
No 403
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.67 E-value=1.1e+02 Score=27.67 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=43.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh----
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK---- 380 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 380 (580)
|.+++.-|+|.+++...-+--+.--+........-|-.|.+.+.+..+.++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777665443322111112223333344456666666666666655553333333335555544432
Q ss_pred -cCCHHHHHHHH
Q 041384 381 -CGSITSSHQIF 391 (580)
Q Consensus 381 -~g~~~~A~~~~ 391 (580)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555554
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.48 E-value=36 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=22.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041384 105 TQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137 (580)
Q Consensus 105 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 137 (580)
.+.|-..++..++++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777776666654
No 405
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.72 E-value=1.8e+02 Score=28.51 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcC---CCCCcchHHHHH
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEM---AARDFVSWTTLI 406 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~ 406 (580)
..+......++..+ .|+...+..+++.....+...+... ...++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~----------------v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLEL----------------LEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHH----------------HHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555543 6888888888877654422222221 22222211 112223344455
Q ss_pred HHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 041384 407 SGYGF---HGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG 448 (580)
Q Consensus 407 ~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 448 (580)
.++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55544 4789999999999999998887766666666655544
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.97 E-value=76 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRL 326 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 326 (580)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888889999999999988876
No 407
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.49 E-value=10 Score=34.21 Aligned_cols=82 Identities=5% Similarity=-0.039 Sum_probs=60.4
Q ss_pred hCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSS-LVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
..+.-|+..|...+..-.+.|.+.+.-.++.+. . .+.++..|-. ...-+...++++.+..+|.+.++.+|.+|..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 445667777777777666777788888888777 2 3346666643 333456788999999999999999999999888
Q ss_pred HHHHH
Q 041384 541 LLSMV 545 (580)
Q Consensus 541 ~l~~~ 545 (580)
.....
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
Confidence 76653
No 408
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=44 Score=29.86 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+=.++.+.++++.|....++....+|.++.-+.--+-+|.+.|-+.-|++-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3345567778888888888888888888887777777788888888888777776544
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.21 E-value=68 Score=23.31 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=32.1
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC--H--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh
Q 041384 410 GFHGYGEEALQLFLEMQE----SGVEPD--A--ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~----~g~~p~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (580)
.+.|++..|.+.+.+..+ .+..+. . .....+.......|++++|...+++.++-..-.-|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 455667777555555433 221111 1 222233445566788888888888776543333333
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.02 E-value=50 Score=28.11 Aligned_cols=57 Identities=14% Similarity=0.013 Sum_probs=41.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
+.......+.+......+.+.+-....|++.++..++..+...|+.++|.+..+++.
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333345666666666655555555677888889999999999999999988888873
No 411
>PRK10941 hypothetical protein; Provisional
Probab=56.74 E-value=1.5e+02 Score=26.84 Aligned_cols=77 Identities=10% Similarity=-0.050 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
.+.+-.+|.+.++++.|+.+.+.+... .|+ +.-+.--.-.|.+.|.+..|..=++..++...-.|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 345556677777777777777777773 454 33444445556777777777777776665555555555555444444
No 412
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.51 E-value=2.1e+02 Score=28.03 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHH
Q 041384 228 KPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK---VKDVVIWSSI 304 (580)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l 304 (580)
..+......++..+ .|+...+..+++.+...+...+ .+....++.... ..+...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It-----------------~~~v~~~~~~~~~~~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT-----------------LELLEEALQKRAARYDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC-----------------HHHHHHHHhhhhhccCCCccHHHHH
Confidence 44555555554433 6788787777776654322222 222222222111 1122233344
Q ss_pred HHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 041384 305 IRGYSQ---SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR 345 (580)
Q Consensus 305 ~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 345 (580)
+.++.+ .++.+.|+..+..|.+.|..|....-..++.++..
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 444444 57899999999999999877776555555555433
No 413
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.49 E-value=33 Score=31.15 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHH-HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC-YVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLV 509 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 509 (580)
|+..|...+..-.+.|.+.+.-.++.+.++. .+.++..|-. ...-|...++++.+..+|.+. ...| ++..|-...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 5555666666556677888888888887763 3344444432 223455678888888888876 3333 455564443
No 414
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.09 E-value=1.7e+02 Score=26.79 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=8.7
Q ss_pred HHHHHHHHhhccCChHH
Q 041384 335 TLLAILSSCTRQSFLSH 351 (580)
Q Consensus 335 ~~~~ll~~~~~~~~~~~ 351 (580)
+|..++.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45555555555555443
No 415
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.88 E-value=2.6e+02 Score=28.80 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=83.9
Q ss_pred HHhCCChhHHHHHHHHHHH-------CCCCCCHhhHHHHHHHhhccC-----CcHHHHHHHHHHHHhCCCCCchHHHhHH
Q 041384 104 FTQNGFYVRSLEMFREMYL-------CGFVLKAELLAGIISLCSQIG-----ELELGRQIHALVIVDGSFELSVFVSTAL 171 (580)
Q Consensus 104 ~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l 171 (580)
+...+|.+.|+..|+...+ .| .+....-+-.+|.+.. +...|..++....+.| .|+.......
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 3456678888888888766 44 3334444555554432 5667888888888877 5555444333
Q ss_pred HHHhHh-cCCHHHHHHHHhcCCCC-CeehHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 041384 172 LDLYSK-CHHWLIALRVFEQMVIR-NEVSWTAMISGCI----DSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR 245 (580)
Q Consensus 172 ~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 245 (580)
+..... ..+...|.++|...... ...++-.+..+|. -..+...|..++++..+.| .|....-...+..+.. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 333333 24567777777766433 2222222222222 2235677777777777776 3332322333333444 6
Q ss_pred CchhHHHHHHHHHHhcCC
Q 041384 246 DLRNGKAIHGYAYCCGFD 263 (580)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~ 263 (580)
+.+.+...+..+.+.|..
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 666666655555555433
No 416
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.74 E-value=13 Score=35.75 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=66.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCChh-HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 041384 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIE-HYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRILSSLVSACRIHGR 517 (580)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 517 (580)
+......+.++.|..++.++++ ..|+.. .|..=..++.+.+++..|+.=+.++ +..|+ ...|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4456677888999999988765 556533 3333346777888887777654444 44453 2344444556667778
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 518 LEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 518 ~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
+.+|...|+......|+++.+-..+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 88888888888888888887554443
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.68 E-value=1.1e+02 Score=24.25 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 539 YTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
...|+-++++.|+|++++.+++.+.+
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444455555555544444443
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=54.48 E-value=2.3e+02 Score=28.11 Aligned_cols=242 Identities=10% Similarity=0.018 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc------CChHHHHHHHHHHHH-hCCCC-chhHHHHHHHHhHhcCCHH-H
Q 041384 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQ------SFLSHGLGVHCYIMK-AGLNF-DVSIGNALMNMYSKCGSIT-S 386 (580)
Q Consensus 316 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~-~ 386 (580)
....+|++..+. -|+...+...|..|... ..+.....+++.... .+..+ ....|..+.-.+....... -
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334556555433 44555555555555322 234444455554444 22222 3445555555555544433 3
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcC-ChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHH-HHHHHHHHHH
Q 041384 387 SHQIFNEMAARDFVSWTTLISGYGFHG-YGEE-ALQLFLEMQESGVEPDAITVLAILSACNHAGL-VKE-AETLFNNVMK 462 (580)
Q Consensus 387 A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~ 462 (580)
|..+..+....+...|-.-+....+.. +++- -.+++...+..-..+-...++... .|+ ... ...++-.+..
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 444443555555555555444444221 1111 112222333221122222233222 122 111 1122222233
Q ss_pred hhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M-KPSTRILSSLVSACR--IHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
..+-......-+.+++.+.+.|-..+|..++..+. . +|+...+..++..-. ..-+...+...++.+..-...++..
T Consensus 453 s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 453 SVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred HhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 23222223344567788888899999999988873 3 457777777776532 2234778888899888766678888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 539 YTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|......-...|..+-+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777766678888887777766654
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.47 E-value=3.2e+02 Score=29.73 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHhhccCCh--HHHHHHHHHHHHhCCCCchhHHHHHH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRL---ERIEPNSVTLLAILSSCTRQSFL--SHGLGVHCYIMKAGLNFDVSIGNALM 375 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~ 375 (580)
|..|+..|...|+.++|+++|.+..+ ..-.--...+..++.-+.+.+.. +-.+++-....+........++...-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred HHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 041384 376 NMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL------ 449 (580)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~------ 449 (580)
.--+.+=..+.+...+ .....+-+...++.+....-.++..-.+.++..|...=+
T Consensus 587 ~~~~~sis~~~Vl~~l-------------------~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYL-------------------KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCCHHHHHHHh-------------------hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Q ss_pred -----------HHHHHHHHHHHHHhhCCCCC--------hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 041384 450 -----------VKEAETLFNNVMKEKKIALA--------IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVS 510 (580)
Q Consensus 450 -----------~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 510 (580)
.+.....++. .....|. ...|....-.+.+.|+.++|+.++-..-
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~---s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L------------- 711 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLES---SDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL------------- 711 (877)
T ss_pred hccccchhhhHHHHHHHHhhh---hcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh-------------
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
+|++.|........+..+.+...|..+...|..
T Consensus 712 -----~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 712 -----DDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred -----cchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.87 E-value=39 Score=22.29 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 041384 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVM 461 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (580)
+...++++.++.. +-|-.--..++.++...|++++|.++++++.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444432 3344444455666666677777766666643
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.75 E-value=2.1e+02 Score=27.41 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHH
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAETLFNNV 460 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 460 (580)
.|..+.+.|-+..|+++.+-+.+....-|+......|+.| .+.++++-.+++.+..
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4567788899999999998888864333666666677765 4577888788887763
No 422
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.19 E-value=1.5e+02 Score=31.53 Aligned_cols=161 Identities=14% Similarity=0.034 Sum_probs=86.6
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKE 452 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 452 (580)
++|..+.+.|-.+-|+.+.+.=. + -.......|+.+.|++....+ -|..++..|...-..+|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~-----t---RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER-----T---RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc-----h---heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHH
Confidence 34444555555555555443221 1 112234456666666554332 255667777777777788777
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 453 AETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
|+..|+. .+ .|+.|.-.|.-.|+.++-.++..-.+...|..+.. ..+ .-.|+.++-..+++..-
T Consensus 691 aEm~yQ~-~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~--qna-lYl~dv~ervkIl~n~g--- 754 (1202)
T KOG0292|consen 691 AEMCYQR-TK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF--QNA-LYLGDVKERVKILENGG--- 754 (1202)
T ss_pred HHHHHHH-hh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH--HHH-HHhccHHHHHHHHHhcC---
Confidence 7777777 33 24555556667777777766666554444433221 111 12466666555554421
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
.-+-.|.. ....|.-++|.++.++..+.++.
T Consensus 755 -~~~laylt----a~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 755 -QLPLAYLT----AAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred -cccHHHHH----HhhcCcHHHHHHHHHhhccccCC
Confidence 12222222 22567777788777777665443
No 423
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.92 E-value=1.4e+02 Score=27.81 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
..|+.-..+-.-.|++..|+.-..+++..+|.+..+|..=+.++....++.+|....++
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 34444444444556666777777777777777777777666666666665555544443
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.39 E-value=30 Score=22.83 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.....++.+|...|++++|.++++++.+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3355666777777777777777776643
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.31 E-value=1.2e+02 Score=23.72 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHH
Q 041384 417 EALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (580)
.+.++|..|.+.|+--.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 667777777776655533 4555666666667777777777664
No 426
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.79 E-value=1.5e+02 Score=25.00 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CC----CchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAE-----------PE----NAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
-+++..|.+.-++.++..+++.+.+.. |. .-.+.+..+..+.+.|..+.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 456667778888888888888887643 22 223466677788899999999998873
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.76 E-value=34 Score=29.64 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=41.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 041384 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS 501 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 501 (580)
...+.++.+.|.+++.+++. -.+-....|-.+...-.+.|+++.|.+-+++. ++.|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34567888888888888654 22334667777888888899999998888877 44554
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.50 E-value=58 Score=20.06 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041384 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 442 (580)
.+.|-..++...+++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766665554
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.22 E-value=1.8e+02 Score=25.66 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHH
Q 041384 414 YGEEALQLFLEMQESGVEPDAIT-VLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 414 ~~~~a~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~ 456 (580)
+++.|+..|.+.+. +.|+..+ |+.=+-.+.+..+++.+..=
T Consensus 25 ~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~d 66 (284)
T KOG4642|consen 25 RYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEED 66 (284)
T ss_pred hhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhh
Confidence 44455554444444 3444422 22233333444444444433
No 430
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=50.12 E-value=45 Score=19.39 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+|..|+..-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888888999998888877655
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.57 E-value=1.1e+02 Score=29.56 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-------cC-CCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIE-------AE-PENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.|++..+-.||+..|+++++.+.- .- +-..+++..++-+|...++|.+|++.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544321 01 224455666666666666666666666544
No 432
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.36 E-value=3.2e+02 Score=28.26 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (580)
...|..-+..+...++.. ...++.+..+-...+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 334555444444433322 444455444433445556667777777777777777777765543221 2345556666
Q ss_pred hHhcCCHHHHHHHHhcCC
Q 041384 378 YSKCGSITSSHQIFNEMA 395 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~ 395 (580)
+.++|+...+..+-+.+.
T Consensus 448 ~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HH----------------
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 777777766655555443
No 433
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.23 E-value=1.9e+02 Score=29.92 Aligned_cols=63 Identities=8% Similarity=-0.026 Sum_probs=27.1
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (580)
+...-.-++..|.+.|-.+.|.++.+.+-.+-+ ...-|...+..+.+.++...+..+-..+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455566677777777777777766554422 234566666667777776666655555443
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.04 E-value=36 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 041384 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLT 235 (580)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 235 (580)
-||..|....+.|++++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46778888888888888888888888887754444443
No 435
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=48.91 E-value=87 Score=27.63 Aligned_cols=79 Identities=6% Similarity=0.132 Sum_probs=49.4
Q ss_pred hhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHhcCChHHHH
Q 041384 481 GKSGKIEDACKVVSTMPM-KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEP---ENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
|-.|+++++++.++.++. .-|...+...+.--++-|.++...-++.+..-..+ -.|...+.++......|+.--..
T Consensus 21 CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip~ 100 (267)
T PF05476_consen 21 CLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIPS 100 (267)
T ss_pred HhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCHH
Confidence 446677777777777742 23555555555555566777777777777665543 36667777777777777655444
Q ss_pred HHH
Q 041384 557 EVW 559 (580)
Q Consensus 557 ~~~ 559 (580)
+++
T Consensus 101 ql~ 103 (267)
T PF05476_consen 101 QLY 103 (267)
T ss_pred HHH
Confidence 443
No 436
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.71 E-value=51 Score=18.84 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=8.7
Q ss_pred HHHHHHHhcCChHHHHHH
Q 041384 541 LLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~ 558 (580)
.++-.+..+|++++|+++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555555555555
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.97 E-value=1.9e+02 Score=26.53 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh----------cCCHHHH
Q 041384 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK----------CGSITSS 387 (580)
Q Consensus 318 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 387 (580)
.++++.|...++.|.-..+..+.-.+.+.=.+..++.+|+.+...... |..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888888888888877777777777788888888877753322 4445544442 3555555
Q ss_pred HHHHhcCCCCC
Q 041384 388 HQIFNEMAARD 398 (580)
Q Consensus 388 ~~~~~~~~~~~ 398 (580)
.++++.-...|
T Consensus 338 mkLLQ~yp~td 348 (370)
T KOG4567|consen 338 MKLLQNYPTTD 348 (370)
T ss_pred HHHHhcCCCCC
Confidence 55555544333
No 438
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.56 E-value=2.1e+02 Score=29.50 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCC------CeehHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 041384 170 ALLDLYSKCHHWLIALRVFEQMVIR------NEVSWTAMISGCIDSQNYD------TGIDLFRAMQREGVKPTRVTLTIV 237 (580)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 237 (580)
+|..+|...|++-.+.++++..... =...||..|+...+.|.++ .|.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 4555555555555555555554221 1235666666666666653 222333222 255677778777
Q ss_pred HHHHhcCCCchhHHHHHHHHH
Q 041384 238 LLACAELRDLRNGKAIHGYAY 258 (580)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~ 258 (580)
+.+.....+.....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766555333333333343333
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.41 E-value=40 Score=30.66 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 337 (580)
-|+..|....+.||+++|+.++++.++.|+.--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36677888888888888888888888887655545543
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.24 E-value=74 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=12.9
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNNV 460 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~ 460 (580)
+...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444566666666666666664
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.00 E-value=93 Score=24.99 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 041384 118 REMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 118 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
+.+.+.|.++++.-. .++..+...++.-.|.++++.+.+.+
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 334444444433322 23333344444455555555555544
No 442
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.83 E-value=3.1e+02 Score=27.15 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=65.0
Q ss_pred HhccCCHHHHHHHHHHH--HHhhCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-----
Q 041384 444 CNHAGLVKEAETLFNNV--MKEKKIALA-----IEHYACYVDLLGKSGKIEDACKVVSTMP----------MKPS----- 501 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~--~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~----- 501 (580)
+.-.|++.+|.+++... -+..|...+ ...+|.+.-...+.|.+..+..+|.+.- ++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34467777777776541 011222222 2223555555556666655555554431 2221
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 502 -----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 502 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
-...-...-.|...|++-.|.+.|.+.......||..|..++.+|+..
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122233455677889999999999999999999999999999998764
No 443
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.71 E-value=2.3e+02 Score=25.47 Aligned_cols=187 Identities=11% Similarity=0.075 Sum_probs=119.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhccCChHHHHHHHHHHHH---h--CCCCchhHHHHHHHHhHhc
Q 041384 310 QSGDLSEAMKLFSRMRLERIEPNS---VTLLAILSSCTRQSFLSHGLGVHCYIMK---A--GLNFDVSIGNALMNMYSKC 381 (580)
Q Consensus 310 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~ 381 (580)
+...+++|+.-|.+..+..-.-.. .....++....+.+++++....+.++.. + ....+....|++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344688888888887765322223 3455677888899999999988888764 2 2234566778888877777
Q ss_pred CCHHHHHHHHhcCCC-----CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CC-------HHHHHHHH
Q 041384 382 GSITSSHQIFNEMAA-----RDFV----SWTTLISGYGFHGYGEEALQLFLEMQESGVE----PD-------AITVLAIL 441 (580)
Q Consensus 382 g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~----p~-------~~~~~~l~ 441 (580)
.+.+--..+++.-.+ +|.. +-.-|...|...+.+.+...++.++...--. -| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 776666655553221 2222 3345667777777787877888777643111 11 24577777
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH----HHhhhcCChHHHHH-HHHhC
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV----DLLGKSGKIEDACK-VVSTM 496 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~ 496 (580)
..|..+.+-.....++++.+.-..-.|.+.....+- ....+.|++++|.. +|+..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 888888888888888888766555556655444332 23456788887754 44433
No 444
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.14 E-value=2.3e+02 Score=25.44 Aligned_cols=70 Identities=4% Similarity=0.023 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 041384 501 STRILSSLVSACRIHGRLE-VAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (580)
+-..|..--......|+.. +-+++.+.|.+.+..|-.+|..--+++...+.++.-+.+..++++.++.++
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 4444433333333344444 445566666666666666666666666666666666666666666554433
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.78 E-value=84 Score=26.25 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=13.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.|.+.|.+++|.+++++..+ +|++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 45555555555555555555 444443
No 446
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.58 E-value=2.6e+02 Score=25.79 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 216 IDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277 (580)
Q Consensus 216 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (580)
.++++.|.+.++.|.-.++.-+.-.+.+.=.+.++..+|+.+...... +..++..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHH
Confidence 467777777888888888877777777877888888888887653322 555555555
No 447
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.50 E-value=1.6e+02 Score=30.01 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 505 LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 505 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
...|.-.|....+.|.|.++++++.+.+|.++-.-..+..+....|.-++|...+.....
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 344444556666777777777777777777766666666666677777777776665544
No 448
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.48 E-value=61 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCC
Q 041384 48 LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP 90 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 90 (580)
.++|+.....|+..|+.+|..++..+.-+=-++...+++..|.
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3789998999999999999999998888888888888888775
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.34 E-value=29 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 041384 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSS 342 (580)
Q Consensus 310 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 342 (580)
..|.-..|..+|++|.+.|-+||. ++.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345667799999999999988886 4455543
No 450
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.58 E-value=4.5e+02 Score=28.32 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 041384 172 LDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQ 223 (580)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 223 (580)
-..|...|+++.|.++-+.-+..-...+-.-...|...+++..|-+++.++.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3456677888888877655411111122233455666777888888877763
No 451
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.43 E-value=2.2e+02 Score=26.38 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=9.6
Q ss_pred HhhccCChHHHHHHHHHHHH
Q 041384 342 SCTRQSFLSHGLGVHCYIMK 361 (580)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~ 361 (580)
+..+.|+..+|.+.++.+.+
T Consensus 284 CARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhh
Confidence 33345555555555554443
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.11 E-value=1.5e+02 Score=23.85 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=27.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 041384 220 RAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280 (580)
Q Consensus 220 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (580)
..+++.|++++..-. .++..+...++.-.|..+++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333444444433322 233444444444555555555555555555544444445555444
No 453
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.98 E-value=2.3e+02 Score=24.88 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 381 CGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEM 425 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (580)
.+++++|.+.+-.-.-.. .--.-++.++...|+.+.|+.+++..
T Consensus 91 ~~~~~~A~~~L~~ps~~~-~~~~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIP-WFPDKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred hHhHHHHHHHhCCCCCCc-ccHHHHHHHHHHCCChhHHHHHHHhc
Confidence 445555555553321110 11123555555556666666665553
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.88 E-value=1.6e+02 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHhccCCHHHHHHHHHH
Q 041384 443 ACNHAGLVKEAETLFNN 459 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~ 459 (580)
.|.+.|.+++|.+++++
T Consensus 120 VCm~~g~Fk~A~eiLkr 136 (200)
T cd00280 120 VCMENGEFKKAEEVLKR 136 (200)
T ss_pred HHHhcCchHHHHHHHHH
Confidence 34555555555555555
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.75 E-value=97 Score=22.72 Aligned_cols=38 Identities=18% Similarity=0.003 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
..|.-.|.+.|+.+.|.+-|+.=..+.|.+......|.
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 34555567777777777777777777777777655554
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.69 E-value=86 Score=26.00 Aligned_cols=16 Identities=6% Similarity=-0.126 Sum_probs=7.4
Q ss_pred CcHHHHHHHHHHHHhC
Q 041384 144 ELELGRQIHALVIVDG 159 (580)
Q Consensus 144 ~~~~a~~~~~~~~~~~ 159 (580)
+.-.|.++++.+.+.+
T Consensus 40 ~hlSa~eI~~~L~~~~ 55 (169)
T PRK11639 40 GAISAYDLLDLLREAE 55 (169)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3334444444444444
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.74 E-value=5e+02 Score=28.04 Aligned_cols=216 Identities=13% Similarity=0.020 Sum_probs=102.1
Q ss_pred HhcCCHHHHHHHHhcC----CCCCee-------hHHHHH-HHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 041384 176 SKCHHWLIALRVFEQM----VIRNEV-------SWTAMI-SGCIDSQNYDTGIDLFRAMQRE----GVKPTRVTLTIVLL 239 (580)
Q Consensus 176 ~~~~~~~~a~~~~~~~----~~~~~~-------~~~~li-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 239 (580)
....++++|..++.++ ..++.. .|+.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4456677777666654 222211 333332 2234467777777777665543 12334455556666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHH-----HHHHcCCCHHHHH--HHHhhCC-----C-----CChhhHH
Q 041384 240 ACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH-----MYCECTEALHPAR--IIFERTK-----V-----KDVVIWS 302 (580)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~a~--~~~~~~~-----~-----~~~~~~~ 302 (580)
+..-.|++++|..+.....+..-..+...+..... .+...|+ ...+. ..|.... . .-..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-VARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677888888877777666543333333322221 1222332 11111 1111110 0 1122344
Q ss_pred HHHHHHHhCCChhHHHHHHHH----HHHCCCCCCHHHH--HHHHHHhhccCChHHHHHHHHHHHHhCCCCc----hhHHH
Q 041384 303 SIIRGYSQSGDLSEAMKLFSR----MRLERIEPNSVTL--LAILSSCTRQSFLSHGLGVHCYIMKAGLNFD----VSIGN 372 (580)
Q Consensus 303 ~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 372 (580)
.++.++.+ .+.+..-... .......|-...+ ..++......|+.++|...+.++......+. ...-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 2222222221 1112122222222 2566677778899999888888877333332 11111
Q ss_pred HHHH--HhHhcCCHHHHHHHHhcCC
Q 041384 373 ALMN--MYSKCGSITSSHQIFNEMA 395 (580)
Q Consensus 373 ~l~~--~~~~~g~~~~A~~~~~~~~ 395 (580)
..+. .....|+.+.+.....+-.
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1122 2234667666666655533
No 458
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.31 E-value=2.4e+02 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA 434 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 434 (580)
...+.++..+...|+++.|-++|.-+.... ..|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDi 75 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDI 75 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCCh
Confidence 456778888888899999999888888752 3344
No 459
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.18 E-value=2.6e+02 Score=24.50 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGV-EPDAITVL--AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
+|.|+--|.-...+.+|.+.|..-..-.. .+|..++. .-+......|+.+.|...... +...-+..|...+-.|..
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~-l~PeiLd~n~~l~F~Lq~ 107 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ-LNPEILDTNRELFFHLQQ 107 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH-hChHHHccchhHHHHHHH
Q ss_pred H----hhhcCChHHHHHHHHh
Q 041384 479 L----LGKSGKIEDACKVVST 495 (580)
Q Consensus 479 ~----~~~~g~~~~A~~~~~~ 495 (580)
. +.+.|..++|+++.+.
T Consensus 108 q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 108 LHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=4.2e+02 Score=26.97 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN-HAGLVKEAETLFNNV 460 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 460 (580)
|..+.+.|-+.-|+++.+-+.+....-|+.....+|+.|+ +..++.--+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4556677888888888887777543336666777777654 466777777777763
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.02 E-value=1.4e+02 Score=24.84 Aligned_cols=35 Identities=3% Similarity=-0.183 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 041384 246 DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280 (580)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (580)
+.-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444455555544444444444444444444444
No 462
>PRK09857 putative transposase; Provisional
Probab=39.96 E-value=1.8e+02 Score=26.82 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
.++.-..+.++.++-.++++.+.+..|.......+++.-+.+.|.-++++++.++|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344433456666666777777766666666666677887877887788888888888887653
No 463
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=5.4e+02 Score=28.13 Aligned_cols=119 Identities=11% Similarity=0.023 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 041384 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGV 430 (580)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 430 (580)
.|..+-..|.... +.++.++.+.|..-.-.+.++.-.+.|.. -.....+.-.+.|.++..-=-
T Consensus 1165 da~klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~kw~d 1227 (1304)
T KOG1114|consen 1165 DAVKLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELLKWLD 1227 (1304)
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHHHHhh
Confidence 3555555555443 56677776665432222223222222211 011123344445555443211
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCCh
Q 041384 431 EPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKI 486 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (580)
.-|..++..-.......|++..+.+++.+++++.+-.++...+..++..+...|--
T Consensus 1228 ~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1228 ASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred cCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 22445555555556677888888888888888888888888887777777666644
No 464
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.60 E-value=3.1e+02 Score=25.27 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhcCChHHH
Q 041384 472 HYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A 489 (580)
.|..|+.+++.+|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466677777777765544
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.80 E-value=1.5e+02 Score=26.56 Aligned_cols=55 Identities=9% Similarity=-0.133 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.+..-|.+.|++++|..+++.+.... .....+...+..++.+.|+.++...+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444555566666666665553221 11333344555566666666666555433
No 466
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.75 E-value=78 Score=22.52 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCCh
Q 041384 48 LQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 110 (580)
..+++.+.+.|+ .+.... -...+..-+.+.|.++++.++.++..+|..+..++-..|..
T Consensus 19 ~~v~~~L~~~~V-lt~~~~---e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 19 KYLWDHLLSRGV-FTPDMI---EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred HHHHHHHHhcCC-CCHHHH---HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 346666666664 222221 22223445677777777777777777777777777766543
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.56 E-value=91 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCC
Q 041384 99 SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144 (580)
Q Consensus 99 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 144 (580)
.++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3455565666667777777777777666666665555555555544
No 468
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.35 E-value=4.7e+02 Score=27.07 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHhhccCCCCC-ccchHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 041384 61 ADPVISNSLISMYAKFSKPESAYQLFDEMPYRD-TISWNSIINCFTQNGFYVRSLEMFREMYLCGF 125 (580)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 125 (580)
+....+..|+..+.. =+.+...++++++.. . ...+..+++++...|-......+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455566777765544 356667777776654 3 56778888888888877666666666655443
No 469
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.08 E-value=1.2e+02 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHHHhC
Q 041384 550 GNWLGAEEVWRVMRAK 565 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~ 565 (580)
|....|.+-|.++...
T Consensus 59 G~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 59 GELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4455666666665543
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.02 E-value=3.8e+02 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.554 Sum_probs=10.3
Q ss_pred HHHHhHhcCCHHHHHHHHhcC
Q 041384 374 LMNMYSKCGSITSSHQIFNEM 394 (580)
Q Consensus 374 l~~~~~~~g~~~~A~~~~~~~ 394 (580)
+...|..+|+++.|.+.|.+.
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhh
Confidence 344444555555555555543
No 471
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=37.67 E-value=4.3e+02 Score=26.38 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=36.2
Q ss_pred CCcchHHHHHHhhcccchhHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHcCCCchHHHHhhccCC
Q 041384 26 NTAILPSVIKACAYAQTHQHFGLQLHCTALKSG-SDADPVISNSLISMYAKFSKPESAYQLFDEMP 90 (580)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 90 (580)
|...+...+..|.+.+.+ .....+|..|+... ..|+.+++.+. .-|-.+.+++.|..+|....
T Consensus 104 D~~lW~~yi~f~kk~~~~-~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTY-GEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGL 167 (568)
T ss_pred CHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHh
Confidence 666677777766666656 66666777766553 34444444332 22334444777777766544
No 472
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.45 E-value=3.9e+02 Score=26.76 Aligned_cols=107 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhc
Q 041384 8 EQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFD 87 (580)
Q Consensus 8 ~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 87 (580)
++..+.+++.+...|+..+...+..+.+... |+. +.|..+++++...+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~--Gd~-RdAL~lLeq~i~~~--~~~it~~~V~~~l-------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGD--GSV-RDMLSFMEQAIVFT--DSKLTGVKIRKMI-------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--ChH-HHHHHHHHHHHHhC--CCCcCHHHHHHHh--------------
Q ss_pred cCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 041384 88 EMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135 (580)
Q Consensus 88 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 135 (580)
.-.+......++.+....+....|+.++++|.+.|..|.......+
T Consensus 244 --g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 244 --GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred --CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 473
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.43 E-value=3.3e+02 Score=24.95 Aligned_cols=48 Identities=19% Similarity=0.025 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG---------------NWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 567 (580)
+.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 55666666666666655 33344444 444444 55666666666555543
No 474
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.96 E-value=1.7e+02 Score=21.53 Aligned_cols=24 Identities=33% Similarity=0.189 Sum_probs=14.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
...|.-.|.+.|+.+.|.+-|+.-
T Consensus 75 HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 75 HAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHh
Confidence 444555566666666666666544
No 475
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.88 E-value=5e+02 Score=26.90 Aligned_cols=58 Identities=5% Similarity=0.009 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 041384 268 LSAALMHMYCECTEALHPARIIFERTKVKD-VVIWSSIIRGYSQSGDLSEAMKLFSRMRLER 328 (580)
Q Consensus 268 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 328 (580)
.+..++..+.... .+....++..... . ...+..++++....|-......+.+.+....
T Consensus 312 ~f~~lv~~lR~~~--~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 312 KFLRLVRLLRTLS--EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 3444444443332 4444455444433 2 4566667777777776554444444444433
No 476
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.80 E-value=1.6e+02 Score=21.23 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
-+++..+.+|.|......++..+...|++++|.+.+-++.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555555555555555555556665555555555444
No 477
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.76 E-value=4e+02 Score=25.76 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLER--IEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK 361 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 361 (580)
.+..+...|..+|+++.|++.|.+.++-- .+-....+..+|....-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667778888899999988888854331 111223344555555667777766666655554
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=36.44 E-value=1.1e+02 Score=21.80 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChh
Q 041384 178 CHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213 (580)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (580)
..+.+.+.++++.++.++..+|..+..++-..|...
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 344566666666666666666666666666555443
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.13 E-value=4e+02 Score=25.56 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC--CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHH-
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKK--IALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSS- 507 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~- 507 (580)
-..++..+-..|..+|+.+.|.+++++++-..+ ..|. +..+.. -...|. .++. ..-|...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCc--------cccCCccccchHHHHHH
Confidence 456777777788888898888888887653111 0000 000000 000010 0011 1124444443
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 041384 508 --LVSACRIHGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCS-ESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 508 --l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 564 (580)
.+..+.+.|-+..|.++.+-+..++|. ||......++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455678889999999999999999998 8887777777654 56788878887776654
No 480
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.04 E-value=52 Score=31.98 Aligned_cols=90 Identities=16% Similarity=0.059 Sum_probs=74.4
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 041384 477 VDLLGKSGKIEDACKVVSTM-PMKPSTRIL-SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
+.-+...++++.|..++.++ ...|+-..| ..=..++.+.+++..|+.=+.++.+.+|.....|..-+.++.+.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44556778899999999888 567755444 3334788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 041384 555 AEEVWRVMRAKG 566 (580)
Q Consensus 555 A~~~~~~~~~~~ 566 (580)
|...|+......
T Consensus 91 A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 91 ALLDLEKVKKLA 102 (476)
T ss_pred HHHHHHHhhhcC
Confidence 999998866543
No 481
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.73 E-value=4.6e+02 Score=26.12 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (580)
-+.++....+...+.+-.+-......+++.....-.+.++..|++.+|.+++-. .++.+.||
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 344555666666666666666655567777777888889999999999987654 45665555
No 482
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=35.49 E-value=10 Score=21.23 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=11.0
Q ss_pred CCccCCceeEEEe
Q 041384 566 GLSKSYGFSRIEN 578 (580)
Q Consensus 566 ~~~~~~~~~~~~~ 578 (580)
++.-+|+.+|+++
T Consensus 10 ~~~~dp~vswle~ 22 (43)
T PF08195_consen 10 SYDMDPDVSWLEV 22 (43)
T ss_pred cccCCCCccHHHh
Confidence 6778899999986
No 483
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.14 E-value=1.4e+02 Score=29.09 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=30.5
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 491 KVVSTMPMKPST--RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 491 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
.+|....++|.. -++..-+..+.+.+++..|-.+.+++++++|+..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 345555555533 3556667777899999999999999999988653
No 484
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.95 E-value=3.6e+02 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 430 VEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 430 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
-.++..+...++..++..++|..-.++|+......+...|...|..+++.....|+..-..++.++-
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 3455556666666666666666666666664433344455556666666666666666666655543
No 485
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.41 E-value=2.1e+02 Score=27.75 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHhccCCHHHHHHHHHHHHHhh--
Q 041384 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAI----------------TVLAILSACNHAGLVKEAETLFNNVMKEK-- 464 (580)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 464 (580)
..++.++....++.+.++..+. |..|+.. +...|++.++-.||+..|+++++.+--..
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~----~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~ 154 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKR----GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKG 154 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhc----cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccch
Confidence 3345555655555554443333 3455443 24556777888999999999988731111
Q ss_pred ---CCC-CChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 465 ---KIA-LAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 465 ---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
.++ -.+.++..+.-+|.-.+++.+|.+.|...-
T Consensus 155 l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 155 LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 125567778888888999999999887753
No 486
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.30 E-value=4.6e+02 Score=25.72 Aligned_cols=238 Identities=10% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHH
Q 041384 238 LLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEA 317 (580)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 317 (580)
+.++...| +.+...+-......-.+.... ....++....+ ......+.+.+..++.........++...+...-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~--~aa~al~~~~~-~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~ 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVA--CAALALLAQED-ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHH--HHHHHHhccCC-hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC
Q 041384 318 MKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR 397 (580)
Q Consensus 318 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 397 (580)
..+...+. .++.......+.++...+ ..+...+....+ .++..+-...+.+++..+..+..-.+..-....
T Consensus 120 ~~L~~~L~----~~~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~ 190 (410)
T TIGR02270 120 PWLEPLLA----ASEPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDS 190 (410)
T ss_pred HHHHHHhc----CCChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCC
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
|...-..-+.+....|. ..|...+..... .|+......+...+...|.. ++...+...+++.. +-...+
T Consensus 191 ~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d~~------vr~~a~ 259 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQAAA------TRREAL 259 (410)
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCch-hHHHHHHHHhcChh------hHHHHH
Q ss_pred HHhhhcCChHHHHHHHHhCCCCC
Q 041384 478 DLLGKSGKIEDACKVVSTMPMKP 500 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~p 500 (580)
.++.+.|+...+.-+.+.+...+
T Consensus 260 ~AlG~lg~p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHHcCCcchHHHHHHHhcCcH
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.99 E-value=2.5e+02 Score=31.63 Aligned_cols=122 Identities=16% Similarity=0.053 Sum_probs=85.2
Q ss_pred HHHhccCCHHHHHH------HHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCC-CHHHH
Q 041384 442 SACNHAGLVKEAET------LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP---------MKP-STRIL 505 (580)
Q Consensus 442 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~ 505 (580)
..+...|.+.++.+ ++...+. .-.++....|..+...+.+.|+.++|+..-.+.. ..| +...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~-~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMG-VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhh-hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 34455666666666 6665333 2234557778899999999999999998877652 223 33455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEA--------EPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
..+...+...++...|...+.++... .|+...+...+...+...++++.|.++++.+.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56665666667788888888877653 255666677777777777999999999998876
No 488
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.73 E-value=6.1e+02 Score=26.96 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 415 GEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 415 ~~~a~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
.++....+.... ..|+..+......++... .|+...++.++++++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345555555444 457777887777777654 6899999999987554
No 489
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.71 E-value=1.1e+02 Score=20.14 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041384 104 FTQNGFYVRSLEMFREMYLCGFVLKAELLAGIIS 137 (580)
Q Consensus 104 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 137 (580)
+...|++-+|-++++++-.....+....+..+|.
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 3456777777777777654333333444444443
No 490
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.66 E-value=1.2e+02 Score=23.31 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhcCChHHHHH
Q 041384 538 NYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~ 557 (580)
++..|..++...|++++++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 34445555555555555443
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.56 E-value=1.3e+02 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=29.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCc
Q 041384 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247 (580)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (580)
.++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566667777777777776666666666666666555543
No 492
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.45 E-value=4e+02 Score=24.84 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHh---hCCCCChhHHHHHHH-Hhh----hcCChHHHHHHHHhCC---CCCCHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAIEHYACYVD-LLG----KSGKIEDACKVVSTMP---MKPSTR 503 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~-~~~----~~g~~~~A~~~~~~~~---~~p~~~ 503 (580)
........-|++.|+.+.|.+.+.+..+. .|.+.|+..+..-+- .|. -...+++|..++++-+ .+....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34445556677788888877777765442 355555443322111 111 1233555666666553 112223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
+|..+- |....++++|-.+|-......
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 333221 234456777777666665554
No 493
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.09 E-value=6.5e+02 Score=27.14 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 415 GEEALQLFLEMQ-ESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 415 ~~~a~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
.++..+.+++.. ..|+..+......+.. ...|+...|+.++++++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 455666666654 3566667776666654 357889999999887553
No 494
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=32.83 E-value=2.3e+02 Score=21.85 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=46.3
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLA 525 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 525 (580)
..|.+++|..-+.++|......|...+|..-. -|...+..|..++...|++++++...
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~G----------------------FDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDG----------------------FDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHH----------------------HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhccccc----------------------HHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34566666666666665544445433332110 12233444555556666665554444
Q ss_pred HHHH-------hcCCCCchHHH----HHHHHHHhcCChHHHHHHHHHH
Q 041384 526 HQLI-------EAEPENAANYT----LLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 526 ~~~~-------~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+..+ +++.+....|. .-+.++...|+.++|...|++.
T Consensus 79 ~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 79 DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4333 33444444333 3445677788999988888654
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.64 E-value=4.3e+02 Score=25.74 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--------hHhcCCHHHHHHHHhcCCC
Q 041384 325 RLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM--------YSKCGSITSSHQIFNEMAA 396 (580)
Q Consensus 325 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~ 396 (580)
....+.||..+.+.+...++..-..+-...+|+...+.+- |-...+-+++-. -.+...-+++.++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 3456789998888888887777778888888888887763 333333333211 1345567889999988875
Q ss_pred ----CCcchHHHHHHHHH
Q 041384 397 ----RDFVSWTTLISGYG 410 (580)
Q Consensus 397 ----~~~~~~~~l~~~~~ 410 (580)
.|+.-+-.|...|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 35556666666554
No 496
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.48 E-value=3.8e+02 Score=24.22 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhcCCCch-hHH
Q 041384 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF----RAMQREGVKPTRVTLTIVLLACAELRDLR-NGK 251 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 251 (580)
+++++++|.+++.. =...+.+.|+...|-++- +...+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45666666666532 133455566655554443 33334456666665555555554433211 233
Q ss_pred HHHHHHHHhc-----CCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC
Q 041384 252 AIHGYAYCCG-----FDFDHHLSAALMHMYCECTEALHPARIIFERTK 294 (580)
Q Consensus 252 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 294 (580)
.+.+.+++.. ...++.....+...|.+.++ +..|+..|-...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~-~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGN-YYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT--HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHHhcC
Confidence 3444433321 22355666677777777777 666666554443
No 497
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.39 E-value=91 Score=23.92 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccC
Q 041384 98 NSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIG 143 (580)
Q Consensus 98 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 143 (580)
..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455666666667777777777777666666655544445444444
No 498
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.31 E-value=4.2e+02 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=12.1
Q ss_pred HhhHHHHHHHhhccCCcHHHHHHHHHHHH
Q 041384 129 AELLAGIISLCSQIGELELGRQIHALVIV 157 (580)
Q Consensus 129 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 157 (580)
...-..++.+++...+.+...++++.+..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33344444444444444444444444444
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.28 E-value=92 Score=20.84 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=17.0
Q ss_pred CCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhC
Q 041384 127 LKAELLAGIISLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
|....++.++...+...-.+.+...+.++.+.|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445555555555555555555555555555
No 500
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.25 E-value=2.1e+02 Score=25.22 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=23.6
Q ss_pred HHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCc
Q 041384 503 RILSSLVSACR---------IHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 503 ~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
..|..+...+. ..++...|...++++.+++|.-.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34555555553 34577889999999999887633
Done!