Query 041384
Match_columns 580
No_of_seqs 634 out of 3302
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-41 6.5E-46 348.0 39.4 483 73-568 63-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.7E-40 1.3E-44 338.5 33.7 484 26-548 83-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1E-26 3.5E-31 224.8 42.9 374 101-551 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 8.6E-29 2.9E-33 242.4 21.8 184 299-483 27-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 6.6E-29 2.2E-33 243.2 19.4 209 10-243 9-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-25 3.4E-30 217.8 40.2 328 199-566 36-369 (388)
7 2gw1_A Mitochondrial precursor 99.9 7.7E-24 2.6E-28 213.0 34.3 439 96-567 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 2E-23 7E-28 209.8 33.4 406 130-566 7-445 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.5E-22 8.6E-27 203.1 38.0 430 94-564 25-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5.1E-22 1.7E-26 196.0 35.3 337 195-570 25-415 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 3.8E-21 1.3E-25 189.8 32.5 366 162-555 23-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-20 4.2E-25 190.7 33.6 440 63-541 25-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 3.9E-23 166.3 33.2 311 198-547 5-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.1E-18 7.1E-23 164.5 31.6 300 231-567 3-337 (359)
15 3hym_B Cell division cycle pro 99.8 3.8E-18 1.3E-22 160.6 30.5 250 301-553 59-322 (330)
16 3hym_B Cell division cycle pro 99.8 5.4E-18 1.9E-22 159.5 28.3 266 296-566 20-300 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 1.3E-15 4.6E-20 158.3 46.5 383 128-557 984-1376(1630)
18 2xm6_A Protein corresponding t 99.8 2.2E-16 7.5E-21 156.9 39.9 366 128-548 38-452 (490)
19 2ooe_A Cleavage stimulation fa 99.8 3.9E-16 1.3E-20 156.8 39.5 422 117-566 2-493 (530)
20 2xm6_A Protein corresponding t 99.8 8E-16 2.7E-20 152.9 40.3 362 149-567 27-434 (490)
21 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.5E-19 151.0 49.7 469 30-560 842-1340(1630)
22 1b89_A Protein (clathrin heavy 99.8 5.8E-17 2E-21 151.0 26.7 371 74-524 14-410 (449)
23 1b89_A Protein (clathrin heavy 99.8 1.9E-17 6.6E-22 154.2 22.0 286 177-496 15-308 (449)
24 1fch_A Peroxisomal targeting s 99.8 3E-17 1E-21 157.1 24.3 260 297-562 63-356 (368)
25 4eqf_A PEX5-related protein; a 99.8 3.1E-17 1.1E-21 156.7 22.5 261 297-561 64-352 (365)
26 4g1t_A Interferon-induced prot 99.8 8.8E-16 3E-20 152.2 33.4 356 166-577 95-471 (472)
27 3cv0_A Peroxisome targeting si 99.8 4.2E-17 1.4E-21 153.2 22.2 262 297-563 20-313 (327)
28 2ooe_A Cleavage stimulation fa 99.8 4E-15 1.4E-19 149.4 37.5 203 297-534 271-495 (530)
29 3mkr_A Coatomer subunit epsilo 99.8 5.1E-17 1.7E-21 148.7 21.2 270 274-558 7-287 (291)
30 3mkr_A Coatomer subunit epsilo 99.8 1.2E-15 4E-20 139.6 28.8 248 305-567 6-266 (291)
31 4eqf_A PEX5-related protein; a 99.7 1.1E-16 3.9E-21 152.8 21.4 232 332-566 64-311 (365)
32 1fch_A Peroxisomal targeting s 99.7 1.1E-16 3.9E-21 153.0 19.8 256 308-566 35-315 (368)
33 3uq3_A Heat shock protein STI1 99.7 6.4E-15 2.2E-19 133.0 22.6 216 338-566 10-237 (258)
34 2pl2_A Hypothetical conserved 99.7 2.9E-15 1E-19 130.9 18.7 195 365-563 2-212 (217)
35 3cv0_A Peroxisome targeting si 99.7 1.8E-14 6.1E-19 135.2 25.5 265 93-395 20-313 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 8.4E-17 2.9E-21 162.1 8.4 150 162-312 124-286 (1134)
37 4g1t_A Interferon-induced prot 99.7 6.5E-14 2.2E-18 138.8 28.6 385 96-543 53-471 (472)
38 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-17 2.1E-21 163.0 6.6 147 63-210 127-286 (1134)
39 3uq3_A Heat shock protein STI1 99.6 9.7E-15 3.3E-19 131.8 19.6 236 299-545 6-256 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 2.3E-13 7.9E-18 132.9 29.8 376 135-565 9-421 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.7E-14 1.6E-18 128.7 21.7 242 309-559 16-269 (275)
42 3u4t_A TPR repeat-containing p 99.6 6.1E-14 2.1E-18 127.7 19.8 246 300-550 5-269 (272)
43 1ouv_A Conserved hypothetical 99.6 5.7E-13 1.9E-17 121.3 26.0 225 297-567 5-253 (273)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.6E-18 124.5 20.9 196 370-567 39-240 (252)
45 2vq2_A PILW, putative fimbrial 99.6 1.8E-13 6.3E-18 120.4 21.5 197 368-566 8-212 (225)
46 2q7f_A YRRB protein; TPR, prot 99.6 7.4E-14 2.5E-18 124.7 16.7 196 368-566 23-223 (243)
47 2ho1_A Type 4 fimbrial biogene 99.6 1E-12 3.4E-17 118.0 23.9 209 298-541 37-248 (252)
48 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-12 7.3E-17 126.1 28.0 213 33-257 9-243 (452)
49 1ouv_A Conserved hypothetical 99.5 1.8E-12 6.3E-17 117.9 24.8 232 265-537 5-257 (273)
50 2h6f_A Protein farnesyltransfe 99.5 6.6E-13 2.3E-17 125.5 22.3 246 298-549 97-366 (382)
51 3u4t_A TPR repeat-containing p 99.5 4.3E-13 1.5E-17 122.0 20.5 230 335-568 5-253 (272)
52 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-13 3.9E-18 123.5 16.0 216 298-549 23-240 (243)
53 3sf4_A G-protein-signaling mod 99.5 3.6E-13 1.2E-17 130.5 20.4 266 298-564 9-335 (406)
54 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-13 3.1E-17 111.9 20.2 166 398-567 4-172 (184)
55 2pl2_A Hypothetical conserved 99.5 6.2E-13 2.1E-17 116.0 19.5 205 297-528 4-211 (217)
56 2vq2_A PILW, putative fimbrial 99.5 2E-12 7E-17 113.7 22.8 200 340-542 15-222 (225)
57 4a1s_A PINS, partner of inscut 99.5 1.3E-13 4.4E-18 133.9 16.4 263 301-564 51-371 (411)
58 4e6h_A MRNA 3'-END-processing 99.5 1.4E-10 4.8E-15 117.1 38.5 226 315-546 326-584 (679)
59 3ro2_A PINS homolog, G-protein 99.5 2.9E-13 9.9E-18 127.4 17.7 265 301-566 8-333 (338)
60 2h6f_A Protein farnesyltransfe 99.5 8.2E-13 2.8E-17 124.8 19.6 227 334-566 98-349 (382)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.6E-13 1.9E-17 121.5 17.1 219 344-567 16-246 (275)
62 4abn_A Tetratricopeptide repea 99.5 4.9E-13 1.7E-17 131.5 15.9 191 367-561 101-317 (474)
63 4e6h_A MRNA 3'-END-processing 99.5 4.9E-10 1.7E-14 113.1 37.3 216 351-568 327-573 (679)
64 3sf4_A G-protein-signaling mod 99.5 1E-12 3.5E-17 127.3 15.8 153 401-553 189-364 (406)
65 3ulq_A Response regulator aspa 99.4 5.2E-12 1.8E-16 121.1 18.2 224 341-565 111-368 (383)
66 3nf1_A KLC 1, kinesin light ch 99.4 4.2E-13 1.4E-17 124.7 10.2 237 298-565 27-307 (311)
67 3ulq_A Response regulator aspa 99.4 4.9E-11 1.7E-15 114.3 23.4 229 304-532 109-369 (383)
68 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 4.1E-16 104.9 16.7 168 367-537 4-176 (184)
69 3as5_A MAMA; tetratricopeptide 99.4 9.4E-12 3.2E-16 105.6 16.0 163 402-567 11-175 (186)
70 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4.2E-16 119.9 18.3 276 199-533 51-374 (411)
71 2ond_A Cleavage stimulation fa 99.4 1.2E-10 4E-15 107.8 23.8 219 315-537 33-276 (308)
72 2ond_A Cleavage stimulation fa 99.4 6E-11 2E-15 109.8 21.7 214 350-568 33-273 (308)
73 4gyw_A UDP-N-acetylglucosamine 99.4 1.1E-11 3.8E-16 126.7 18.1 162 399-564 9-173 (723)
74 1hz4_A MALT regulatory protein 99.4 6.5E-10 2.2E-14 106.1 28.6 261 304-564 20-321 (373)
75 3ro2_A PINS homolog, G-protein 99.4 2.7E-11 9.3E-16 113.7 18.2 278 200-534 9-335 (338)
76 4i17_A Hypothetical protein; T 99.3 4.8E-11 1.6E-15 105.1 17.4 193 367-568 6-212 (228)
77 3nf1_A KLC 1, kinesin light ch 99.3 4.8E-12 1.7E-16 117.5 11.0 238 265-534 26-310 (311)
78 4abn_A Tetratricopeptide repea 99.3 3.7E-11 1.3E-15 118.1 16.7 179 384-567 84-289 (474)
79 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.9E-15 102.0 18.8 205 330-546 4-224 (228)
80 3q15_A PSP28, response regulat 99.3 1.3E-10 4.3E-15 111.2 18.6 221 343-564 111-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.2E-15 96.5 18.2 168 368-538 8-180 (186)
82 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6E-15 105.2 15.3 222 344-565 12-281 (283)
83 3q15_A PSP28, response regulat 99.2 5.8E-09 2E-13 99.6 24.9 227 305-531 108-365 (378)
84 3mv2_B Coatomer subunit epsilo 99.2 6.1E-09 2.1E-13 93.1 21.6 161 401-566 102-283 (310)
85 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-09 1.1E-13 92.9 19.8 64 507-570 152-218 (225)
86 3qky_A Outer membrane assembly 99.1 1.5E-09 5.2E-14 97.7 17.2 183 368-567 15-226 (261)
87 2fo7_A Synthetic consensus TPR 99.1 1.6E-09 5.4E-14 86.1 15.2 127 438-566 5-133 (136)
88 3edt_B KLC 2, kinesin light ch 99.1 3.3E-09 1.1E-13 96.6 18.4 208 297-532 42-282 (283)
89 1qqe_A Vesicular transport pro 99.1 9.4E-10 3.2E-14 100.7 14.0 201 348-563 32-267 (292)
90 1qqe_A Vesicular transport pro 99.1 2.2E-09 7.6E-14 98.2 16.4 201 342-544 46-282 (292)
91 3qky_A Outer membrane assembly 99.1 2.7E-09 9.3E-14 96.0 16.4 205 330-555 12-251 (261)
92 1hz4_A MALT regulatory protein 99.1 6.8E-08 2.3E-12 92.0 26.5 88 409-496 225-319 (373)
93 4gyw_A UDP-N-acetylglucosamine 99.1 1.3E-09 4.5E-14 111.4 14.6 162 367-532 8-175 (723)
94 2pzi_A Probable serine/threoni 99.0 1.6E-09 5.6E-14 111.4 13.9 168 379-551 402-583 (681)
95 4ga2_A E3 SUMO-protein ligase 99.0 3.3E-10 1.1E-14 91.9 6.9 139 409-551 7-149 (150)
96 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.1E-13 80.9 15.7 132 401-535 3-136 (136)
97 3qou_A Protein YBBN; thioredox 99.0 8E-09 2.7E-13 94.1 16.2 176 384-564 102-283 (287)
98 3rjv_A Putative SEL1 repeat pr 99.0 3.7E-08 1.3E-12 85.1 19.0 162 397-567 16-199 (212)
99 2vsy_A XCC0866; transferase, g 99.0 9.1E-09 3.1E-13 104.1 16.7 159 381-543 2-169 (568)
100 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.6E-14 88.9 8.0 125 440-567 3-131 (150)
101 3mv2_B Coatomer subunit epsilo 99.0 1.6E-08 5.6E-13 90.3 16.1 182 352-541 85-292 (310)
102 2r5s_A Uncharacterized protein 99.0 9.8E-09 3.4E-13 85.9 13.3 158 402-564 9-172 (176)
103 3gyz_A Chaperone protein IPGC; 98.9 4.1E-09 1.4E-13 84.9 10.0 98 470-567 36-135 (151)
104 4gco_A Protein STI-1; structur 98.9 1E-08 3.5E-13 80.0 11.3 108 435-544 14-123 (126)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.9E-08 1.3E-12 85.2 16.1 129 401-535 8-154 (213)
106 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.6E-11 86.3 27.5 203 315-530 196-412 (493)
107 4gco_A Protein STI-1; structur 98.9 2E-08 6.7E-13 78.4 12.1 102 466-567 8-112 (126)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 4.1E-08 1.4E-12 90.5 15.7 219 311-558 4-254 (307)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 1.4E-08 4.9E-13 93.6 12.4 197 345-563 3-222 (307)
110 2qfc_A PLCR protein; TPR, HTH, 98.9 1.1E-07 3.8E-12 87.0 18.0 162 402-564 78-265 (293)
111 2pzi_A Probable serine/threoni 98.9 9.3E-09 3.2E-13 105.8 11.9 152 410-566 402-564 (681)
112 3u3w_A Transcriptional activat 98.9 3.7E-07 1.3E-11 83.4 21.6 160 405-564 81-265 (293)
113 3urz_A Uncharacterized protein 98.9 5.4E-08 1.9E-12 83.8 14.7 160 371-535 7-190 (208)
114 2vsy_A XCC0866; transferase, g 98.9 4.7E-08 1.6E-12 98.8 16.3 151 413-567 3-159 (568)
115 2vgx_A Chaperone SYCD; alterna 98.8 1.2E-08 4.3E-13 82.2 9.2 94 472-565 23-118 (148)
116 3urz_A Uncharacterized protein 98.8 8.1E-08 2.8E-12 82.7 14.7 159 404-567 9-188 (208)
117 1a17_A Serine/threonine protei 98.8 9.7E-08 3.3E-12 78.8 14.4 128 435-564 14-145 (166)
118 3qou_A Protein YBBN; thioredox 98.8 2.9E-07 9.8E-12 83.8 18.3 163 330-495 114-280 (287)
119 3dra_A Protein farnesyltransfe 98.8 1.3E-06 4.3E-11 79.1 22.2 230 309-543 43-300 (306)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.3E-07 4.4E-12 82.7 15.3 187 334-537 5-219 (225)
121 3dra_A Protein farnesyltransfe 98.8 5.4E-06 1.9E-10 75.0 25.3 213 348-564 48-286 (306)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.6E-07 8.8E-12 80.0 15.7 131 371-502 9-154 (213)
123 1p5q_A FKBP52, FK506-binding p 98.7 1.4E-07 4.8E-12 87.9 14.4 128 436-563 149-292 (336)
124 2e2e_A Formate-dependent nitri 98.7 3.8E-08 1.3E-12 82.4 9.6 127 409-538 20-151 (177)
125 2uy1_A Cleavage stimulation fa 98.7 9.9E-06 3.4E-10 79.4 28.0 202 350-564 196-412 (493)
126 1na0_A Designed protein CTPR3; 98.7 2.5E-07 8.4E-12 71.9 13.5 115 434-550 9-125 (125)
127 2xcb_A PCRH, regulatory protei 98.7 8.1E-08 2.8E-12 76.9 10.8 89 476-564 24-114 (142)
128 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.6E-12 73.7 12.4 117 434-552 12-130 (131)
129 2lni_A Stress-induced-phosphop 98.7 1.7E-07 5.8E-12 73.9 12.5 116 434-551 16-133 (133)
130 2kck_A TPR repeat; tetratricop 98.7 1.1E-07 3.9E-12 72.3 10.9 100 470-569 6-110 (112)
131 3upv_A Heat shock protein STI1 98.7 1.2E-07 4E-12 74.2 11.1 94 472-565 6-101 (126)
132 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.4E-12 79.0 11.7 154 66-223 9-171 (176)
133 3rjv_A Putative SEL1 repeat pr 98.7 7E-07 2.4E-11 77.0 16.6 162 368-534 18-200 (212)
134 2c2l_A CHIP, carboxy terminus 98.7 4.5E-08 1.5E-12 88.7 9.4 188 368-565 4-199 (281)
135 1hxi_A PEX5, peroxisome target 98.7 1E-07 3.5E-12 73.7 9.8 96 472-567 19-116 (121)
136 3q49_B STIP1 homology and U bo 98.6 3.9E-07 1.3E-11 72.3 12.2 93 472-564 11-105 (137)
137 3gyz_A Chaperone protein IPGC; 98.6 5.1E-07 1.7E-11 72.5 12.8 105 430-536 31-138 (151)
138 3sz7_A HSC70 cochaperone (SGT) 98.6 2.7E-07 9.3E-12 76.0 11.1 110 433-544 10-121 (164)
139 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-06 4.5E-11 79.8 16.6 161 371-531 78-266 (293)
140 1elw_A TPR1-domain of HOP; HOP 98.6 5.1E-07 1.7E-11 69.3 11.9 106 436-543 6-113 (118)
141 3u3w_A Transcriptional activat 98.6 7E-06 2.4E-10 74.9 21.4 158 374-531 81-266 (293)
142 2lni_A Stress-induced-phosphop 98.6 4.3E-07 1.5E-11 71.5 11.3 101 467-567 13-115 (133)
143 4gcn_A Protein STI-1; structur 98.6 1.9E-07 6.6E-12 72.9 8.9 93 473-565 11-112 (127)
144 3gw4_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 74.2 15.5 153 411-564 4-175 (203)
145 4f3v_A ESX-1 secretion system 98.6 8.5E-07 2.9E-11 78.2 13.7 123 441-566 109-238 (282)
146 2vgx_A Chaperone SYCD; alterna 98.6 1.7E-07 5.9E-12 75.4 8.6 108 431-540 17-127 (148)
147 1na0_A Designed protein CTPR3; 98.6 6.8E-07 2.3E-11 69.3 11.9 98 470-567 9-108 (125)
148 2fbn_A 70 kDa peptidylprolyl i 98.6 7E-07 2.4E-11 76.2 12.9 96 471-566 89-187 (198)
149 2dba_A Smooth muscle cell asso 98.6 8.9E-07 3.1E-11 71.2 12.7 111 433-546 27-143 (148)
150 4f3v_A ESX-1 secretion system 98.6 7.2E-07 2.5E-11 78.7 12.5 137 403-544 106-249 (282)
151 1elw_A TPR1-domain of HOP; HOP 98.5 1.8E-06 6E-11 66.2 13.0 98 470-567 4-103 (118)
152 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.7E-11 73.4 12.1 123 444-568 20-147 (177)
153 2vyi_A SGTA protein; chaperone 98.5 8E-07 2.7E-11 69.6 10.6 99 469-567 11-111 (131)
154 3upv_A Heat shock protein STI1 98.5 1.4E-06 4.8E-11 67.9 11.5 110 435-546 5-122 (126)
155 2dba_A Smooth muscle cell asso 98.5 3.4E-06 1.2E-10 67.7 14.2 100 468-567 26-130 (148)
156 2xcb_A PCRH, regulatory protei 98.5 1E-06 3.5E-11 70.4 10.8 107 435-543 19-127 (142)
157 2hr2_A Hypothetical protein; a 98.5 8.2E-07 2.8E-11 70.5 9.4 107 436-565 13-131 (159)
158 3gw4_A Uncharacterized protein 98.5 2.1E-06 7.1E-11 73.5 12.9 153 380-532 4-177 (203)
159 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.8E-11 68.8 10.1 103 440-542 8-116 (129)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 2.1E-06 7.3E-11 70.5 12.0 92 401-496 13-105 (164)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.6E-06 8.8E-11 83.1 13.9 93 470-562 317-412 (457)
162 3q7a_A Farnesyltransferase alp 98.4 0.00024 8.3E-09 64.9 25.5 174 307-485 63-257 (349)
163 3q49_B STIP1 homology and U bo 98.4 2.7E-06 9.3E-11 67.3 11.2 113 432-546 7-126 (137)
164 1a17_A Serine/threonine protei 98.4 3.1E-06 1.1E-10 69.6 11.8 97 471-567 14-112 (166)
165 3k9i_A BH0479 protein; putativ 98.4 4E-07 1.4E-11 69.9 5.8 90 447-537 3-96 (117)
166 3q7a_A Farnesyltransferase alp 98.4 4E-05 1.4E-09 70.1 19.5 213 347-564 68-330 (349)
167 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.4E-11 67.9 9.2 109 435-546 5-122 (131)
168 3rkv_A Putative peptidylprolyl 98.4 1.5E-06 5.1E-11 71.3 9.1 103 434-536 11-131 (162)
169 3ro3_A PINS homolog, G-protein 98.4 2.1E-06 7.1E-11 70.3 9.9 130 436-565 11-158 (164)
170 4b4t_Q 26S proteasome regulato 98.4 1.2E-05 4E-10 78.2 16.8 163 402-564 58-244 (434)
171 2if4_A ATFKBP42; FKBP-like, al 98.3 1.1E-06 3.7E-11 81.9 8.8 151 400-570 180-333 (338)
172 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.3E-11 85.0 10.0 117 442-560 14-134 (477)
173 2c2l_A CHIP, carboxy terminus 98.3 4.6E-06 1.6E-10 75.4 12.1 111 433-545 3-115 (281)
174 1elr_A TPR2A-domain of HOP; HO 98.3 3.7E-06 1.3E-10 65.7 9.1 94 402-496 7-105 (131)
175 1ihg_A Cyclophilin 40; ppiase 98.3 8.1E-06 2.8E-10 76.9 12.5 89 470-558 273-363 (370)
176 2kck_A TPR repeat; tetratricop 98.2 5.9E-06 2E-10 62.5 9.6 99 436-536 8-111 (112)
177 2fbn_A 70 kDa peptidylprolyl i 98.2 1.1E-05 3.6E-10 68.7 12.0 65 503-567 89-153 (198)
178 2xev_A YBGF; tetratricopeptide 98.2 2.3E-05 8E-10 61.0 13.1 92 475-566 7-106 (129)
179 1p5q_A FKBP52, FK506-binding p 98.2 5E-06 1.7E-10 77.4 10.5 98 470-567 147-261 (336)
180 1hxi_A PEX5, peroxisome target 98.2 6.8E-06 2.3E-10 63.3 9.4 96 439-536 22-119 (121)
181 4gcn_A Protein STI-1; structur 98.2 1.9E-05 6.4E-10 61.4 11.9 59 402-462 11-70 (127)
182 3k9i_A BH0479 protein; putativ 98.2 1.8E-06 6.1E-11 66.2 5.7 85 482-566 2-91 (117)
183 3rkv_A Putative peptidylprolyl 98.2 6.1E-06 2.1E-10 67.6 9.3 94 473-566 14-127 (162)
184 3ma5_A Tetratricopeptide repea 98.2 1.1E-05 3.8E-10 59.6 9.3 66 500-565 5-70 (100)
185 3n71_A Histone lysine methyltr 98.1 6E-06 2E-10 80.2 9.4 123 444-566 319-465 (490)
186 3dss_A Geranylgeranyl transfer 98.1 0.00061 2.1E-08 62.0 21.9 129 309-441 40-186 (331)
187 3dss_A Geranylgeranyl transfer 98.1 0.00052 1.8E-08 62.4 21.3 214 350-567 47-306 (331)
188 2l6j_A TPR repeat-containing p 98.1 1.6E-06 5.4E-11 65.7 4.1 92 470-561 4-103 (111)
189 4b4t_Q 26S proteasome regulato 98.1 6.1E-05 2.1E-09 73.1 16.1 158 407-564 12-203 (434)
190 3bee_A Putative YFRE protein; 98.1 2.5E-05 8.6E-10 56.3 9.4 73 499-572 3-78 (93)
191 2kat_A Uncharacterized protein 98.1 1.4E-05 4.7E-10 60.9 8.5 64 501-564 18-81 (115)
192 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.5E-10 64.0 10.1 132 401-532 11-159 (164)
193 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.6E-10 63.5 8.0 112 401-543 13-143 (159)
194 1na3_A Designed protein CTPR2; 98.0 2.7E-05 9.2E-10 56.1 8.7 80 471-550 10-91 (91)
195 1dce_A Protein (RAB geranylger 98.0 0.00023 8E-09 70.9 18.1 167 384-554 45-244 (567)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.7E-05 9.1E-10 75.9 10.2 114 435-567 269-382 (457)
197 1zu2_A Mitochondrial import re 98.0 7.3E-06 2.5E-10 64.9 5.0 85 483-567 15-122 (158)
198 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.4E-10 74.6 7.6 117 434-567 179-295 (338)
199 1ihg_A Cyclophilin 40; ppiase 98.0 2.7E-05 9.2E-10 73.3 9.7 115 434-567 223-338 (370)
200 2l6j_A TPR repeat-containing p 97.9 5.3E-05 1.8E-09 57.0 8.8 68 501-568 3-70 (111)
201 1klx_A Cysteine rich protein B 97.9 0.00018 6E-09 56.7 11.4 90 476-567 31-128 (138)
202 1wao_1 Serine/threonine protei 97.8 6.8E-05 2.3E-09 73.3 10.4 93 475-567 11-105 (477)
203 1na3_A Designed protein CTPR2; 97.8 0.00012 4.1E-09 52.6 8.4 67 501-567 8-74 (91)
204 1dce_A Protein (RAB geranylger 97.7 0.00092 3.2E-08 66.6 17.1 153 412-568 42-224 (567)
205 3n71_A Histone lysine methyltr 97.7 0.0002 6.8E-09 69.6 10.9 125 408-532 318-465 (490)
206 2kc7_A BFR218_protein; tetratr 97.5 0.00033 1.1E-08 51.3 7.9 79 476-562 6-87 (99)
207 2kat_A Uncharacterized protein 97.5 0.00056 1.9E-08 51.7 9.2 65 470-534 19-85 (115)
208 1klx_A Cysteine rich protein B 97.5 0.002 6.7E-08 50.6 12.6 112 413-533 9-128 (138)
209 3lvg_A Clathrin heavy chain 1; 97.5 1.3E-05 4.5E-10 74.3 -0.3 238 62-319 53-325 (624)
210 1zu2_A Mitochondrial import re 97.4 0.00018 6E-09 57.0 5.5 74 487-567 63-149 (158)
211 1wy6_A Hypothetical protein ST 97.4 0.022 7.4E-07 42.7 15.6 141 409-568 17-157 (172)
212 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.5E-09 52.6 5.2 58 509-566 7-65 (99)
213 3ma5_A Tetratricopeptide repea 97.3 0.00093 3.2E-08 49.0 8.2 63 398-462 6-69 (100)
214 3qww_A SET and MYND domain-con 97.2 0.00058 2E-08 65.1 7.4 82 483-564 311-410 (433)
215 3lvg_A Clathrin heavy chain 1; 97.2 3E-05 1E-09 72.0 -1.4 237 164-419 53-324 (624)
216 3ly7_A Transcriptional activat 97.2 0.012 4E-07 53.9 15.0 64 501-565 276-339 (372)
217 3ly7_A Transcriptional activat 97.1 0.006 2.1E-07 55.7 12.7 150 385-537 181-345 (372)
218 3qwp_A SET and MYND domain-con 97.1 0.0011 3.8E-08 63.3 8.3 87 478-564 295-399 (429)
219 3u64_A Protein TP_0956; tetrat 97.1 0.0027 9.1E-08 55.5 9.3 88 486-573 179-277 (301)
220 1pc2_A Mitochondria fission pr 97.1 0.0019 6.5E-08 50.5 7.5 92 448-541 12-110 (152)
221 3qww_A SET and MYND domain-con 97.0 0.0049 1.7E-07 58.8 11.9 94 446-539 310-424 (433)
222 3qwp_A SET and MYND domain-con 96.9 0.007 2.4E-07 57.8 11.6 98 443-540 296-414 (429)
223 3mkq_A Coatomer beta'-subunit; 96.9 0.029 1E-06 59.2 17.7 191 306-554 607-801 (814)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.013 4.6E-07 43.0 8.6 75 469-543 4-87 (104)
225 3bee_A Putative YFRE protein; 96.5 0.021 7.1E-07 40.8 9.1 68 468-535 4-76 (93)
226 1pc2_A Mitochondria fission pr 96.5 0.015 5.2E-07 45.4 8.5 66 500-565 30-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.4 0.027 9.2E-07 41.3 9.4 69 433-501 4-78 (104)
228 1qsa_A Protein (soluble lytic 96.4 0.93 3.2E-05 45.2 28.7 113 414-530 229-347 (618)
229 3mkq_A Coatomer beta'-subunit; 96.2 0.046 1.6E-06 57.6 13.7 130 372-528 633-762 (814)
230 3mkq_B Coatomer subunit alpha; 96.1 0.37 1.3E-05 38.7 15.1 102 378-497 15-116 (177)
231 1wy6_A Hypothetical protein ST 96.0 0.31 1.1E-05 36.6 13.7 68 297-365 90-157 (172)
232 3mkq_B Coatomer subunit alpha; 95.6 0.56 1.9E-05 37.6 14.1 130 406-562 12-141 (177)
233 4h7y_A Dual specificity protei 95.4 0.06 2.1E-06 41.4 7.4 109 433-544 12-136 (161)
234 4ady_A RPN2, 26S proteasome re 95.3 3.4 0.00012 43.0 27.8 282 276-565 384-696 (963)
235 1nzn_A CGI-135 protein, fissio 95.2 0.052 1.8E-06 40.7 6.5 98 442-541 9-113 (126)
236 3u64_A Protein TP_0956; tetrat 95.1 0.039 1.3E-06 48.3 6.4 76 416-496 180-266 (301)
237 1nzn_A CGI-135 protein, fissio 95.1 0.27 9.1E-06 36.9 10.0 65 500-564 33-102 (126)
238 4h7y_A Dual specificity protei 95.1 0.17 5.7E-06 39.0 8.9 51 516-566 74-124 (161)
239 4gns_B Protein CSD3, chitin bi 94.9 0.5 1.7E-05 48.1 14.5 54 509-562 344-397 (754)
240 1y8m_A FIS1; mitochondria, unk 94.8 0.42 1.4E-05 36.5 10.4 73 467-539 36-114 (144)
241 4ady_A RPN2, 26S proteasome re 94.2 6.1 0.00021 41.2 27.7 250 307-564 383-657 (963)
242 3o48_A Mitochondria fission 1 94.2 0.28 9.5E-06 36.9 8.1 74 465-538 35-114 (134)
243 2ff4_A Probable regulatory pro 93.9 0.16 5.5E-06 47.7 8.1 69 504-572 173-246 (388)
244 3ffl_A Anaphase-promoting comp 93.3 0.49 1.7E-05 37.3 8.4 62 436-497 65-149 (167)
245 2wpv_A GET4, UPF0363 protein Y 92.1 6.3 0.00022 35.2 17.0 170 64-259 34-216 (312)
246 3ffl_A Anaphase-promoting comp 91.9 0.85 2.9E-05 36.0 8.1 122 429-562 13-148 (167)
247 4b4t_P 26S proteasome regulato 91.7 6.2 0.00021 37.7 15.8 202 312-527 30-263 (445)
248 3o48_A Mitochondria fission 1 91.3 1.5 5.1E-05 33.1 8.5 68 499-566 37-108 (134)
249 1y8m_A FIS1; mitochondria, unk 90.8 4.3 0.00015 31.0 10.7 69 499-567 36-108 (144)
250 1v54_E Cytochrome C oxidase po 90.6 1.2 4.3E-05 31.4 7.0 63 414-478 25-87 (109)
251 3lpz_A GET4 (YOR164C homolog); 90.6 9.3 0.00032 34.4 18.8 170 64-259 36-215 (336)
252 1v54_E Cytochrome C oxidase po 90.5 2 6.7E-05 30.4 7.9 58 487-544 27-87 (109)
253 2wpv_A GET4, UPF0363 protein Y 90.5 9.1 0.00031 34.1 20.9 149 145-305 13-172 (312)
254 3lpz_A GET4 (YOR164C homolog); 90.2 10 0.00034 34.2 22.4 150 146-307 13-176 (336)
255 4fhn_B Nucleoporin NUP120; pro 90.2 22 0.00076 38.8 20.3 139 135-281 818-986 (1139)
256 1qsa_A Protein (soluble lytic 89.3 19 0.00064 35.9 35.4 339 163-527 70-438 (618)
257 1zbp_A Hypothetical protein VP 89.0 0.65 2.2E-05 40.0 5.7 59 479-537 6-66 (273)
258 2uwj_G Type III export protein 88.7 4.7 0.00016 28.3 8.7 79 41-124 20-98 (115)
259 1zbp_A Hypothetical protein VP 88.0 8.9 0.00031 33.1 11.9 119 408-537 6-135 (273)
260 3esl_A Checkpoint serine/threo 87.3 8 0.00027 31.7 10.7 51 517-567 94-146 (202)
261 2uwj_G Type III export protein 87.2 5.4 0.00018 28.0 8.1 87 143-235 20-106 (115)
262 3txn_A 26S proteasome regulato 86.8 20 0.00068 33.3 15.8 163 334-496 20-207 (394)
263 2p58_C Putative type III secre 86.5 5 0.00017 28.2 7.7 79 41-124 21-99 (116)
264 2ff4_A Probable regulatory pro 86.0 3.6 0.00012 38.5 9.5 70 302-372 175-249 (388)
265 2p58_C Putative type III secre 85.7 7.5 0.00026 27.4 9.2 88 142-235 20-107 (116)
266 2y69_E Cytochrome C oxidase su 85.5 4.1 0.00014 30.6 7.4 61 416-478 70-130 (152)
267 2y69_E Cytochrome C oxidase su 84.6 10 0.00036 28.5 9.1 48 497-544 83-130 (152)
268 4gns_B Protein CSD3, chitin bi 83.7 38 0.0013 34.6 16.1 60 469-528 612-681 (754)
269 4fhn_B Nucleoporin NUP120; pro 83.0 12 0.00041 40.9 13.3 60 504-563 901-965 (1139)
270 4a1g_A Mitotic checkpoint seri 82.2 15 0.00053 28.5 9.8 49 521-569 84-134 (152)
271 3ltm_A Alpha-REP4; protein eng 80.6 23 0.00079 29.2 18.6 18 432-449 155-172 (211)
272 1wdy_A 2-5A-dependent ribonucl 80.1 27 0.00091 30.3 12.7 19 70-88 43-61 (285)
273 4b4t_P 26S proteasome regulato 79.8 43 0.0015 31.8 20.7 159 297-459 55-243 (445)
274 2wvi_A Mitotic checkpoint seri 79.7 20 0.00069 28.3 9.8 46 521-566 79-126 (164)
275 3ltj_A Alpharep-4; protein eng 79.4 24 0.00083 28.8 18.9 85 372-461 94-178 (201)
276 3kea_A K1L; tropism, ANK repea 78.0 19 0.00066 31.6 10.9 168 3-189 8-182 (285)
277 4b4t_R RPN7, 26S proteasome re 74.2 10 0.00036 35.9 8.4 61 436-496 133-194 (429)
278 4b4t_R RPN7, 26S proteasome re 74.2 28 0.00095 32.9 11.3 61 198-258 133-195 (429)
279 1wdy_A 2-5A-dependent ribonucl 71.5 49 0.0017 28.5 12.1 181 69-265 8-213 (285)
280 3txn_A 26S proteasome regulato 68.3 76 0.0026 29.4 21.1 33 533-567 313-345 (394)
281 3ltj_A Alpharep-4; protein eng 67.6 48 0.0017 26.9 18.6 140 62-210 27-166 (201)
282 3eu9_A Huntingtin-interacting 64.1 19 0.00064 30.3 7.3 40 51-90 25-66 (240)
283 3esl_A Checkpoint serine/threo 63.1 61 0.0021 26.5 10.2 56 413-469 93-149 (202)
284 1k1a_A B-cell lymphoma 3-encod 62.8 58 0.002 27.2 10.3 83 35-119 14-101 (241)
285 3ltm_A Alpha-REP4; protein eng 62.4 63 0.0022 26.4 18.4 81 61-145 31-111 (211)
286 3kea_A K1L; tropism, ANK repea 59.8 42 0.0014 29.4 9.0 18 72-89 37-54 (285)
287 3bqo_A Telomeric repeat-bindin 59.8 48 0.0016 26.9 7.9 71 486-556 94-171 (211)
288 2nsz_A Programmed cell death p 58.3 33 0.0011 25.8 6.7 63 168-230 10-77 (129)
289 3eu9_A Huntingtin-interacting 58.1 22 0.00075 29.9 6.7 15 74-88 17-31 (240)
290 4aez_C MAD3, mitotic spindle c 56.4 49 0.0017 27.6 7.8 31 502-532 150-180 (223)
291 2qx5_A Nucleoporin NIC96; mRNA 56.4 1.7E+02 0.0058 29.4 18.5 41 99-140 157-197 (661)
292 3hra_A Ankyrin repeat family p 53.4 47 0.0016 26.8 7.8 51 73-128 12-66 (201)
293 2qx5_A Nucleoporin NIC96; mRNA 53.1 1.9E+02 0.0065 29.0 18.5 17 546-562 548-564 (661)
294 2ion_A PDCD4, programmed cell 52.3 26 0.00089 27.3 5.4 63 168-230 12-79 (152)
295 2zu6_B Programmed cell death p 51.2 1.3E+02 0.0045 26.7 10.4 72 199-271 169-242 (307)
296 3eiq_C Programmed cell death p 50.7 1.5E+02 0.005 27.1 12.3 63 372-434 221-288 (358)
297 4ets_A Ferric uptake regulatio 50.3 31 0.0011 27.2 5.6 72 7-80 13-86 (162)
298 4g8k_A 2-5A-dependent ribonucl 50.2 89 0.003 28.0 9.7 52 32-89 27-82 (337)
299 1n11_A Ankyrin; clathrin, BAND 49.9 62 0.0021 30.4 9.0 324 170-526 16-365 (437)
300 1oyz_A Hypothetical protein YI 48.3 1.3E+02 0.0045 25.9 21.7 18 397-414 204-221 (280)
301 1ug3_A EIF4GI, eukaryotic prot 48.3 53 0.0018 29.8 7.7 61 168-228 14-78 (339)
302 2nsz_A Programmed cell death p 47.8 59 0.002 24.3 6.6 61 372-432 11-76 (129)
303 3jxi_A Vanilloid receptor-rela 47.6 24 0.00082 30.3 5.2 55 203-257 9-72 (260)
304 4b4t_S RPN3, 26S proteasome re 46.6 47 0.0016 32.0 7.1 68 470-537 231-305 (523)
305 3jxi_A Vanilloid receptor-rela 46.3 42 0.0014 28.7 6.6 92 101-193 9-118 (260)
306 4b4t_S RPN3, 26S proteasome re 44.9 1E+02 0.0035 29.7 9.1 115 435-561 232-366 (523)
307 2d2s_A Exocyst complex compone 43.5 76 0.0026 26.9 7.3 30 467-496 88-117 (235)
308 4a1g_A Mitotic checkpoint seri 42.8 1.2E+02 0.004 23.6 9.3 53 416-469 82-135 (152)
309 1ya0_A SMG-7 transcript varian 42.5 92 0.0032 30.0 8.6 49 513-561 163-211 (497)
310 4gq2_M Nucleoporin NUP120; bet 42.0 1.9E+02 0.0066 30.7 11.8 86 440-531 816-926 (950)
311 1oyz_A Hypothetical protein YI 41.0 1.7E+02 0.0059 25.1 22.9 24 508-532 241-264 (280)
312 2wvi_A Mitotic checkpoint seri 40.6 1.3E+02 0.0045 23.6 8.6 53 416-469 77-130 (164)
313 2fe3_A Peroxide operon regulat 40.2 56 0.0019 25.1 5.6 59 120-180 13-71 (145)
314 2fe3_A Peroxide operon regulat 40.0 86 0.0029 24.0 6.7 59 222-281 13-71 (145)
315 2ion_A PDCD4, programmed cell 39.9 51 0.0017 25.6 5.3 61 372-432 13-78 (152)
316 3b7b_A Euchromatic histone-lys 39.4 1.4E+02 0.0048 24.7 8.8 203 36-259 17-235 (237)
317 3ljn_A Hypothetical protein; a 38.5 60 0.002 29.6 6.6 48 283-330 66-113 (364)
318 3ygs_P Procaspase 9; apoptosis 37.7 92 0.0031 21.8 5.9 37 382-418 51-87 (97)
319 3ygs_P Procaspase 9; apoptosis 37.5 41 0.0014 23.7 4.0 62 50-113 26-87 (97)
320 3bu8_A Telomeric repeat-bindin 37.2 61 0.0021 26.7 5.3 46 486-531 88-143 (235)
321 4aez_C MAD3, mitotic spindle c 36.5 1.9E+02 0.0064 24.2 8.7 53 416-469 131-184 (223)
322 1k1a_A B-cell lymphoma 3-encod 36.0 1.8E+02 0.0063 23.9 10.8 27 203-229 13-39 (241)
323 2p1h_A APAF-1, apoptotic prote 35.7 63 0.0022 22.4 4.8 60 47-110 24-83 (94)
324 3l6a_A Eukaryotic translation 34.9 2.7E+02 0.0091 25.5 13.6 26 335-360 14-39 (364)
325 3hra_A Ankyrin repeat family p 34.5 1.3E+02 0.0046 23.9 7.6 37 50-87 54-93 (201)
326 2d2s_A Exocyst complex compone 34.2 1.6E+02 0.0056 24.8 7.9 31 499-529 88-118 (235)
327 2xig_A Ferric uptake regulatio 33.2 79 0.0027 24.4 5.5 59 120-180 18-76 (150)
328 1wgl_A TOLL-interacting protei 32.7 24 0.00083 22.1 1.9 47 523-571 11-58 (59)
329 2o03_A Probable zinc uptake re 32.4 89 0.003 23.4 5.5 46 99-144 15-60 (131)
330 3eyy_A Putative iron uptake re 32.4 81 0.0028 24.1 5.4 15 145-159 33-47 (145)
331 2xig_A Ferric uptake regulatio 32.2 1.3E+02 0.0045 23.1 6.6 59 222-281 18-76 (150)
332 1n11_A Ankyrin; clathrin, BAND 31.8 1.4E+02 0.0047 28.0 8.2 295 202-527 17-333 (437)
333 2crb_A Nuclear receptor bindin 31.2 72 0.0025 22.0 4.0 21 507-527 20-40 (97)
334 4ets_A Ferric uptake regulatio 31.0 64 0.0022 25.4 4.6 60 120-181 24-85 (162)
335 2zu6_B Programmed cell death p 30.7 2.8E+02 0.0097 24.5 11.7 57 168-224 6-66 (307)
336 2r9g_A AAA ATPase, central reg 30.4 2.2E+02 0.0076 23.2 9.6 59 410-470 25-88 (204)
337 2w57_A Ferric uptake regulatio 29.8 1.9E+02 0.0065 22.2 7.4 61 322-383 6-67 (150)
338 3b7b_A Euchromatic histone-lys 29.7 2.1E+02 0.0073 23.5 8.3 17 207-223 218-234 (237)
339 1wty_A Hypothetical protein TT 29.5 1.2E+02 0.0041 22.2 5.7 68 414-487 3-70 (119)
340 3mwm_A ZUR, putative metal upt 29.4 83 0.0028 23.9 4.9 43 99-141 18-60 (139)
341 1mzb_A Ferric uptake regulatio 27.7 1.6E+02 0.0054 22.1 6.3 59 120-180 9-68 (136)
342 1bd8_A P19INK4D CDK4/6 inhibit 27.6 1.8E+02 0.0062 21.9 7.0 15 176-190 109-123 (156)
343 2o03_A Probable zinc uptake re 27.1 1.3E+02 0.0045 22.4 5.7 47 201-247 15-61 (131)
344 2fu4_A Ferric uptake regulatio 26.4 1.4E+02 0.0049 19.7 7.7 61 220-281 6-67 (83)
345 3bge_A Predicted ATPase; struc 26.1 2.7E+02 0.0091 22.7 8.0 40 410-449 18-57 (201)
346 2pnn_A Transient receptor pote 26.1 97 0.0033 26.6 5.5 51 206-256 20-79 (273)
347 2rfa_A Transient receptor pote 25.9 2E+02 0.0067 23.7 7.4 23 137-159 159-181 (232)
348 2w57_A Ferric uptake regulatio 25.8 1.1E+02 0.0037 23.6 5.1 61 119-181 7-68 (150)
349 3aji_A 26S proteasome non-ATPa 24.8 2.8E+02 0.0097 22.6 8.2 174 2-190 14-194 (231)
350 3l6a_A Eukaryotic translation 24.7 4E+02 0.014 24.3 9.8 27 169-195 16-42 (364)
351 3eyy_A Putative iron uptake re 24.2 1.5E+02 0.0051 22.6 5.5 34 247-280 33-66 (145)
352 3d5l_A Regulatory protein RECX 24.0 3.1E+02 0.011 22.8 8.4 172 320-501 35-211 (221)
353 1bpo_A Protein (clathrin); cla 23.7 4.8E+02 0.016 24.8 11.7 26 370-395 363-388 (494)
354 2keb_A DNA polymerase subunit 23.7 1.9E+02 0.0066 20.2 7.3 61 417-477 27-89 (101)
355 3bu8_A Telomeric repeat-bindin 23.6 93 0.0032 25.6 4.2 48 450-497 88-141 (235)
356 4gq2_M Nucleoporin NUP120; bet 23.4 3.8E+02 0.013 28.4 10.2 53 68-121 815-867 (950)
357 3ljn_A Hypothetical protein; a 23.1 1.8E+02 0.0062 26.2 7.0 80 480-561 180-266 (364)
358 3ph0_C ASCG; type III secretio 23.0 1.4E+02 0.0047 18.4 3.8 40 517-556 21-60 (61)
359 2cfu_A SDSA1; SDS-hydrolase, l 22.9 2.1E+02 0.0071 28.8 7.7 62 486-550 436-497 (658)
360 1oai_A Nuclear RNA export fact 22.8 74 0.0025 19.9 2.8 24 142-165 33-56 (59)
361 3ctd_A Putative ATPase, AAA fa 22.6 3.2E+02 0.011 22.5 8.6 66 403-469 36-109 (213)
362 3mwm_A ZUR, putative metal upt 22.4 1.2E+02 0.004 23.0 4.6 41 203-243 20-60 (139)
363 1ug3_A EIF4GI, eukaryotic prot 22.2 1.8E+02 0.0062 26.2 6.6 65 199-264 14-79 (339)
364 3mv2_A Coatomer subunit alpha; 21.5 4.4E+02 0.015 23.5 13.7 60 492-565 195-256 (325)
365 2etb_A Transient receptor pote 21.1 3.6E+02 0.012 22.4 8.8 92 203-296 6-116 (256)
366 1mzb_A Ferric uptake regulatio 21.0 2.7E+02 0.0091 20.8 7.6 60 221-281 8-68 (136)
367 2pnn_A Transient receptor pote 20.6 3E+02 0.01 23.4 7.6 18 174-191 107-124 (273)
368 2dod_A Transcription elongatio 20.4 1.3E+02 0.0046 20.3 3.9 30 449-479 15-44 (82)
369 3qil_A Clathrin heavy chain 1; 20.4 49 0.0017 24.3 1.8 62 73-142 16-77 (125)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-41 Score=348.04 Aligned_cols=483 Identities=8% Similarity=-0.069 Sum_probs=402.5
Q ss_pred HHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHH
Q 041384 73 YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIH 152 (580)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 152 (580)
+.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+...+.+.|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888888888888999999999999999999999999999985 5678899999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC-------------------CeehHHHHHHHHHhcCChh
Q 041384 153 ALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-------------------NEVSWTAMISGCIDSQNYD 213 (580)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 213 (580)
+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 141 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 141 TKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 98865 3678899999999999999999999999965433 3778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCchhHH--HH-HHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHH
Q 041384 214 TGIDLFRAMQREGVKPT-RVTLTIVLLACAELRDLRNGK--AI-HGYAYCCGFDFDHHLSAALMHMYCECTEALHPARII 289 (580)
Q Consensus 214 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 289 (580)
+|.++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...++..++..|.+.|+ ++.|..+
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE-LRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch-HHHHHHH
Confidence 9999999999864 43 444555544444333222211 11 4444444555556667777888888999 9999999
Q ss_pred HhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc
Q 041384 290 FERTKV--KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD 367 (580)
Q Consensus 290 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 367 (580)
|+.+.. ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999887 789999999999999999999999999998775 4467789999999999999999999999999664 567
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 88999999999999999999999998764 467799999999999999999999999999863 44779999999999
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-------PMKPS--TRILSSLVSACRIH 515 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 515 (580)
.+.|++++|.++|+++++. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999997753 3446788999999999999999999999988 33676 68999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
|++++|++.++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999886543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-40 Score=338.49 Aligned_cols=484 Identities=10% Similarity=-0.004 Sum_probs=326.3
Q ss_pred CCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCC--CCCccchHHHHHH
Q 041384 26 NTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMP--YRDTISWNSIINC 103 (580)
Q Consensus 26 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 103 (580)
+...++.++..+.+.|++ +.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+. +++..+++.++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQY-KCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCc-hHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 344455555555555555 5555555555533 3444555555555555555555555555552 4455555555555
Q ss_pred HHhCCChhHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHH
Q 041384 104 FTQNGFYVRSLEMFREMYLC---------------GFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168 (580)
Q Consensus 104 ~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (580)
|.+.|++++|+.+|+++... +..++..+|+.++.++.+.|++++|.+.|+++.+.+ +.+...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 55555555555555532111 111223444444444444444444444444444433 2233333
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCch
Q 041384 169 TALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR 248 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (580)
..+...+...+..+.+. ...+. +..+...+..+...+|+.++..|.+.|+++
T Consensus 238 ~~l~~~~~~~~~~~~~~--~~~l~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDL--VLKLN--------------------------YSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHHHHTTCSCHHHHHHH--HHHSC--------------------------THHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HHHHHhhcccchhHHHH--HHhcC--------------------------CcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 33333222221111110 00000 222222222333333444444444444555
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 041384 249 NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK---VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMR 325 (580)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 325 (580)
+|.++++.+.+. +++..++..++..+.+.|+ .+.|..+|+++. ..+..+++.++.++.+.|++++|..+++++.
T Consensus 290 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 290 RAEDYLSSINGL--EKSSDLLLCKADTLFVRSR-FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555554444433 2444444445555555555 555544444432 2366788889999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchH
Q 041384 326 LERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSW 402 (580)
Q Consensus 326 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 402 (580)
+.. +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH
Confidence 654 5578889999999999999999999999998864 44678999999999999999999999998764 477899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---CCCCC--hhHHHHHH
Q 041384 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK---KIALA--IEHYACYV 477 (580)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~ 477 (580)
+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++++.. +..|+ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999863 4478999999999999999999999999977632 66777 78999999
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 478 DLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
.+|.+.|++++|.++++++. .+.+..+|..++.+|.+.|++++|.+.++++.+.+|.++..+..++.+|..
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999982 344889999999999999999999999999999999999999999987743
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1e-26 Score=224.78 Aligned_cols=374 Identities=14% Similarity=0.113 Sum_probs=247.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCC
Q 041384 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180 (580)
Q Consensus 101 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (580)
...+.+.|++++|+..++.+.+.. +.+...+..+...+...|+++.|...++...+.. |.+..++..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 344556666666666666665542 1233344444455555666666666666655553 4455555555555555555
Q ss_pred HHHHHHHHhcCC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 041384 181 WLIALRVFEQMV--IR-NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYA 257 (580)
Q Consensus 181 ~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (580)
+++|...|+++. .| +..+|..+..++.+.|++++|.+.|+++.+. .|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------- 133 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD--------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT---------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------------
Confidence 555555555441 12 2334444555555555555555555544433 122
Q ss_pred HHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 041384 258 YCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLL 337 (580)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 337 (580)
+...+..+...+...|++++|...|+++.+.. +.+..++.
T Consensus 134 ---------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 173 (388)
T 1w3b_A 134 ---------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWS 173 (388)
T ss_dssp ---------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ---------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 12223334444555555666666666555442 22345555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC
Q 041384 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGY 414 (580)
Q Consensus 338 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 414 (580)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++... .+..++..+...+...|+
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 56666666666666666666666543 23455566666666777777777777665543 245677788888888899
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 041384 415 GEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVV 493 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (580)
+++|+..++++.+. .| +..++..+...+.+.|++++|...++++++. .+.+..++..++..+.+.|++++|.+.+
T Consensus 253 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 253 IDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998885 45 5678888999999999999999999997763 4556788889999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 041384 494 STM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551 (580)
Q Consensus 494 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+++ ...| +..++..++..+.+.|++++|...++++.+..|.++.++..++.++...|+
T Consensus 329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 887 3334 577899999999999999999999999999999999999999998877664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.6e-29 Score=242.42 Aligned_cols=184 Identities=14% Similarity=0.194 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC---------hHHHHHHHHHHHHhCCCCchh
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF---------LSHGLGVHCYIMKAGLNFDVS 369 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 369 (580)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEMAA----RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACN 445 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 445 (580)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999975 6999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc
Q 041384 446 HAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS 483 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (580)
+.|++++|.+++++ |++.+..|+..||+.++..++..
T Consensus 187 ~~g~~d~A~~ll~~-Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQR-LRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHH-HHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHH-HHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999 56699999999999999988763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.6e-29 Score=243.24 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=165.5
Q ss_pred HHHHHHHHHccCCCCCCC-cchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhcc
Q 041384 10 TLHLYKQELHPSGLYSNT-AILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDE 88 (580)
Q Consensus 10 a~~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 88 (580)
+..+. +.+.+.++.+.+ ..++.+|.+|++.|++ +.|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~-~~~~~k~~~~spe~~l~~~id~c~k~G~~-~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 9 SENLS-RKAKKKAIQQSPEALLKQKLDMCSKKGDV-LEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCH-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred HHHHH-HHHHHhcccCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 33444 777777766554 4688899999999999 99999999999999999999999999999988765432
Q ss_pred CCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHH
Q 041384 89 MPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVS 168 (580)
Q Consensus 89 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 168 (580)
.+.++++.|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.| +.||..+|
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty 143 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSY 143 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccee
Confidence 2345578899999999999999999999999999999999999999999999999 88888888
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcC----CCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 169 TALLDLYSKCHHWLIALRVFEQM----VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (580)
+.+|.+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..++.
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888777 5567778888888888888888888888888888888888888887777765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1e-25 Score=217.77 Aligned_cols=328 Identities=13% Similarity=0.055 Sum_probs=262.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCE 278 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (580)
+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...++.+.+..
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 97 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK----------------- 97 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----------------
Confidence 3334444455555555555555544431 2344455555555555555555555555544322
Q ss_pred cCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 041384 279 CTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCY 358 (580)
Q Consensus 279 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 358 (580)
+.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+.
T Consensus 98 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 98 ----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1244567778888889999999999999998764 23445677788888999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 041384 359 IMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DA 434 (580)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~ 434 (580)
+.+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++.... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99874 44678889999999999999999999998875 34567888999999999999999999999885 55 56
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSAC 512 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 512 (580)
.++..+...+...|++++|...++++++. .+.+..++..++..+.+.|++++|.+.++++. .+.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 88899999999999999999999997762 23346789999999999999999999999983 456788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.+.|++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.7e-24 Score=212.96 Aligned_cols=439 Identities=9% Similarity=-0.030 Sum_probs=258.5
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHh
Q 041384 96 SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLY 175 (580)
Q Consensus 96 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (580)
.+......+.+.|++++|+..|+++.+.+ |+..++..+..++...|+++.|...++.+++.+ |.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 45556677777888888888888887754 677778778888888888888888888887765 55667777777777
Q ss_pred HhcCCHHHHHHHHhcCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHH
Q 041384 176 SKCHHWLIALRVFEQMVI---RNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKA 252 (580)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 252 (580)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-.........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------ 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC------
Confidence 788888888777776622 23333344444443333333333333332222222222211110000000000
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh---CCChhHHHHHHHHHHH--
Q 041384 253 IHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQ---SGDLSEAMKLFSRMRL-- 326 (580)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-- 326 (580)
.|+.......+..+..... . .....| +...+......+.. .|++++|...|+++.+
T Consensus 158 ----------~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 219 (514)
T 2gw1_A 158 ----------LPSVTSMASFFGIFKPELT-F-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219 (514)
T ss_dssp ----------CCCHHHHHHHHTTSCCCCC-C-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred ----------CchhHHHHHHHhhcCHHHH-H-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Confidence 1111100000000000000 0 000001 12233333333333 6777777777777765
Q ss_pred ---CCCC--------CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCC
Q 041384 327 ---ERIE--------PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395 (580)
Q Consensus 327 ---~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 395 (580)
..-. .+..++..+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2111 12345666666777777777777777777766533 6666777777777777777777777655
Q ss_pred C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhH
Q 041384 396 A---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472 (580)
Q Consensus 396 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 472 (580)
. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++. .+.+...
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 374 (514)
T 2gw1_A 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV 374 (514)
T ss_dssp TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH
Confidence 4 245567777777777777777777777777642 224566777777777777777777777776542 2234556
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP----MKPS----TRILSSLVSACRI---HGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
+..++..+.+.|++++|...++++. ..++ ...+..+...+.. .|++++|...++++.+..|.++.++..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 7777777777777777777777662 1122 3367777777777 777777777777777777777777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 542 LSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
++.+|.+.|++++|.+.++++.+...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 77777777777777777777766543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-23 Score=209.85 Aligned_cols=406 Identities=7% Similarity=-0.096 Sum_probs=277.3
Q ss_pred hhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCC---CCCeehHHHHHHHH
Q 041384 130 ELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV---IRNEVSWTAMISGC 206 (580)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 206 (580)
..+......+.+.|+++.|...++.+++.. |+..++..+..++.+.|++++|...|+++. ..+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 345556667778888888888888888865 477788888888888888888888888762 23556777788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHH
Q 041384 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286 (580)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 286 (580)
...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------- 149 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------------- 149 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh-------------
Confidence 888888888888888777642 333333333333322222222222221111111111110000000
Q ss_pred HHHHhhC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhh---ccCChHHHHHHHHHHHH-
Q 041384 287 RIIFERT-KVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCT---RQSFLSHGLGVHCYIMK- 361 (580)
Q Consensus 287 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~- 361 (580)
...... ..|+..... .+........... ...-+.+...+......+. +.|++++|...++.+.+
T Consensus 150 -~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 150 -ERKDKQENLPSVTSMA----SFFGIFKPELTFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp --------CCCCHHHHH----HHHTTSCCCCCCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred -HHHhhccCCchhHHHH----HHHhhcCHHHHHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 000000 011111111 1111111000000 0000122344444444444 48999999999999988
Q ss_pred ----hCC--------CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 041384 362 ----AGL--------NFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLISGYGFHGYGEEALQLFLEMQE 427 (580)
Q Consensus 362 ----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (580)
... +.+..++..+...+...|++++|...++++.+ |+...+..+...+...|++++|...++++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 311 23466788889999999999999999998765 4466788899999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHH
Q 041384 428 SGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRIL 505 (580)
Q Consensus 428 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 505 (580)
.. +.+...+..+...+...|++++|...++++++ ..+.+...+..++..+...|++++|...++++. .+.+...+
T Consensus 299 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 299 LD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp TC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred cC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHH
Confidence 52 33668888999999999999999999999775 233457788999999999999999999999882 34467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch------HHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAA------NYTLLSMVCSE---SGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 566 (580)
..+...+...|++++|...++++.+..|.++. .+..++.++.. .|++++|.+.++++.+..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999888765 89999999999 999999999999998754
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.5e-22 Score=203.08 Aligned_cols=430 Identities=11% Similarity=0.030 Sum_probs=211.7
Q ss_pred ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHH
Q 041384 94 TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLD 173 (580)
Q Consensus 94 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (580)
...|..+...+.+.|++++|+..|+++.+.. +.++.++..+..++...|+++.|.+.++.+++.. |.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 4456777788888888888888888888764 3367788888888888888888888888888876 667788888888
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcCCCc
Q 041384 174 LYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQRE------GVKPTRVTLTIVLLACAELRDL 247 (580)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~ 247 (580)
++...|++++|...|+.+ ..+....+..+..+...+....|...++.+... ...|+.......+ ...+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcCh
Confidence 888889999998888644 222222233344555566667788888887543 1234443333222 22222
Q ss_pred hhHHHHHHHHHHhcCCCchh-HHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 041384 248 RNGKAIHGYAYCCGFDFDHH-LSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRL 326 (580)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 326 (580)
+.+...+.... ...+... ....+...+...+. ......|++++|..+++++.+
T Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 177 HLEVSSVNTSS--NYDTAYALLSDALQRLYSATDE------------------------GYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp HHHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHH------------------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhh------------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 22111110000 0000000 11111111100000 000011234444444444443
Q ss_pred CCCCCC--------HHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--
Q 041384 327 ERIEPN--------SVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA-- 396 (580)
Q Consensus 327 ~~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 396 (580)
.. |+ ..++..+...+...|++++|...++...+.. |+...+..+...+...|++++|...++++.+
T Consensus 231 ~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 231 AN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 31 22 1123333334444455555555555544432 2244444444445555555555555544432
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHH
Q 041384 397 -RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475 (580)
Q Consensus 397 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 475 (580)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++. .+.+...+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 383 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTF 383 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 233344445555555555555555555554431 112344444555555555555555555554431 1222334444
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-C---C----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch
Q 041384 476 YVDLLGKSGKIEDACKVVSTMP-M---K----PSTRILSSLVSACRIH----------GRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-~---~----p~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+...+...|++++|...++++. . . .....+..+...+... |++++|+..++++.+..|.++.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 5555555555555555554431 0 0 0111122333344444 5555555555555555555555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
++..++.+|.+.|++++|.+.+++..+
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555555444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.1e-22 Score=196.01 Aligned_cols=337 Identities=11% Similarity=0.017 Sum_probs=247.8
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHH
Q 041384 195 NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274 (580)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (580)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------
Confidence 34456666667777777777777777766542 235666666677777777777777777666554321
Q ss_pred HHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHH-----------
Q 041384 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS----VTLLAI----------- 339 (580)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l----------- 339 (580)
+...+..+...|...|++++|...|+++.+. .|+. ..+..+
T Consensus 93 ----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 93 ----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHH
Confidence 3344555666666777777777777777654 3332 333333
Q ss_pred -HHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh
Q 041384 340 -LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYG 415 (580)
Q Consensus 340 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 415 (580)
...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344777888888888888888764 45677788888888999999999988888764 4667888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHh
Q 041384 416 EEALQLFLEMQESGVEPDA-ITVLAI------------LSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLL 480 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 480 (580)
++|+..++++... .|+. ..+..+ ...|...|++++|...|+++++.....|. ...+..++.++
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999875 4543 444444 78889999999999999997763222221 44788899999
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH------------HH
Q 041384 481 GKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM------------VC 546 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~ 546 (580)
.+.|++++|+..++++ . .+.+...|..++.+|...|++++|...++++.+..|.++.++..++. .|
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 9999999999999987 3 34478899999999999999999999999999999999999999984 45
Q ss_pred HhcC-----ChHHHHHHHHH-HHhCCCccC
Q 041384 547 SESG-----NWLGAEEVWRV-MRAKGLSKS 570 (580)
Q Consensus 547 ~~~g-----~~~~A~~~~~~-~~~~~~~~~ 570 (580)
...| +.+++.+.+++ ..+..+.+.
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 5555 66677888776 455444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.8e-21 Score=189.77 Aligned_cols=366 Identities=10% Similarity=-0.023 Sum_probs=236.1
Q ss_pred CCchHHHhHHHHHhHhcCCHHHHHHHHhcCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041384 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQMV---IRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVL 238 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (580)
|.+...+..++..+.+.|++++|..+|+++. ..+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 3444555555555555566666655555542 2244455555566666666666666666655542 12345555555
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCCch---hHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 041384 239 LACAELRDLRNGKAIHGYAYCCGFDFDH---HLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLS 315 (580)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (580)
..+.+.|++++|...++.+.+.... +. ..+..+...+.. ..+..+...+...|+++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------------------~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM--------------------QRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHcCCHH
Confidence 6666666666666666665543221 11 222222222111 11223344566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCC
Q 041384 316 EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMA 395 (580)
Q Consensus 316 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 395 (580)
+|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888877653 4466777778888888888888888888877753 4456777888888888888888888888775
Q ss_pred C--C-CcchHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCCHHHHHH
Q 041384 396 A--R-DFVSWTTL------------ISGYGFHGYGEEALQLFLEMQESGVEPD-----AITVLAILSACNHAGLVKEAET 455 (580)
Q Consensus 396 ~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~ 455 (580)
. | +...+..+ ...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4 2 33334333 78888999999999999999885 454 3467788888999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----
Q 041384 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSA------------CRIHG----- 516 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~~----- 516 (580)
.++++++. .+.+...+..++.+|...|++++|...++++ ...| +...+..+..+ |...|
T Consensus 317 ~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 99997652 2345788889999999999999999999888 4556 45566655533 22333
Q ss_pred CHHHHHHHHHH-HHhcCCCCch----------HHHHHHHHHHhcCChHHH
Q 041384 517 RLEVAEMLAHQ-LIEAEPENAA----------NYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 517 ~~~~A~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A 555 (580)
+.+++.+.+++ ..+..|++.. .+..+..+|...|+.+++
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 55677888876 5666665322 345555555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.2e-20 Score=190.69 Aligned_cols=440 Identities=9% Similarity=-0.007 Sum_probs=306.7
Q ss_pred hhHHHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 041384 63 PVISNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLC 139 (580)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 139 (580)
...+..+...+.+.|++++|.+.|+++. +.+...|..+..++.+.|++++|+..|++..+.+ +.+..++..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 3456667777788888888888888764 3467778888888888888888888888887754 23566777778888
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC------CeehHHHHHHHHHhcCChh
Q 041384 140 SQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR------NEVSWTAMISGCIDSQNYD 213 (580)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~ 213 (580)
...|+++.|...++.+ ... |+. ....+..+...+....|...++++... ........+..+....+.+
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN---GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHcCCHHHHHHHHHHH-hcC---CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 8888888888888633 222 111 111233344455556777777776432 2223344455566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-HHhcC--------CCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHH
Q 041384 214 TGIDLFRAMQREGVKPTRVTLTIVLL-ACAEL--------RDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALH 284 (580)
Q Consensus 214 ~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (580)
.+...+..... ..|....+...+. .+... +++++|..+++.+.+.... +...+..+
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~------------ 242 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA------------ 242 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH------------
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH------------
Confidence 65554433322 2222222222222 22221 2445555555554433221 11111111
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCC
Q 041384 285 PARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL 364 (580)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 364 (580)
..++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...++.+.+..
T Consensus 243 -------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 123455666788899999999999999876 5668888899999999999999999999999875
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041384 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL 441 (580)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~ 441 (580)
+.+..++..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 385 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFA 385 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 44678889999999999999999999998765 356789999999999999999999999999863 33567888999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhc----------CChHHHHHHHHhCC--CCCCHHHH
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKS----------GKIEDACKVVSTMP--MKPSTRIL 505 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~ 505 (580)
..+...|++++|...++++++.....++ ...+..+...+.+. |++++|...++++. .+.+...+
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999998764322222 22344556777777 99999999999883 34467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
..+...+.+.|++++|...++++.+..|.+......
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999999999988876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.2e-18 Score=166.25 Aligned_cols=311 Identities=11% Similarity=0.024 Sum_probs=181.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277 (580)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (580)
.+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+....
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 69 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-------------- 69 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------
Confidence 44555666667777777777777766542 224556666666666677777777666666554211
Q ss_pred HcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HH
Q 041384 278 ECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP----NSVTLLAI------------LS 341 (580)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l------------l~ 341 (580)
+...+..+...+...|++++|...+++..+. .| +...+..+ ..
T Consensus 70 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 70 -------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp -------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555555666666677777777666644 33 22222222 35
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHH
Q 041384 342 SCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 418 (580)
.+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5566677777777777666654 33455666666666667777777666666544 2445666666666777777777
Q ss_pred HHHHHHHHHcCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHhhhc
Q 041384 419 LQLFLEMQESGVEPD-AITVL------------AILSACNHAGLVKEAETLFNNVMKEKKIALAI--EHYACYVDLLGKS 483 (580)
Q Consensus 419 ~~~~~~~~~~g~~p~-~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 483 (580)
...+++..+. .|+ ...+. .+...+...|++++|...++++++.....+.. ..+..+..++...
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 7777776664 332 22222 12444666667777777766655422111111 2233455666666
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 484 GKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 484 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
|++++|...+++.. .+.+...+..+...+...|++++|...++++.+.+|.++.++..+..+..
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66666666666652 22355566666666666666666666666666666666666666655543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.1e-18 Score=164.47 Aligned_cols=300 Identities=10% Similarity=0.001 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHh
Q 041384 231 RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ 310 (580)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 310 (580)
...+..+...+...|++++|...++.+.+... .+...+..+...+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---------------------------------~~~~~~~~~a~~~~~ 49 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP---------------------------------DNYIAYYRRATVFLA 49 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---------------------------------ccHHHHHHHHHHHHH
Confidence 44566667777788888888888777765432 245567778888889
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC--CchhHHHHH------------HH
Q 041384 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN--FDVSIGNAL------------MN 376 (580)
Q Consensus 311 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~ 376 (580)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.... .+...+..+ ..
T Consensus 50 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998764 346778899999999999999999999999876420 244444444 57
Q ss_pred HhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEA 453 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 453 (580)
.+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999998765 366788899999999999999999999999862 34678899999999999999999
Q ss_pred HHHHHHHHHhhCCCCChhHHH------------HHHHHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhc
Q 041384 454 ETLFNNVMKEKKIALAIEHYA------------CYVDLLGKSGKIEDACKVVSTM-PMKPS-T----RILSSLVSACRIH 515 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~ 515 (580)
...++++++... .+...+. .++..+.+.|++++|...++++ ...|+ . ..+..+...+...
T Consensus 208 ~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 999999776322 2222222 2366789999999999999987 23343 3 2355678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999988654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.8e-18 Score=160.64 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=174.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS-FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (580)
+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++...+.. +.+...+..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334444455555666666665555442 223445555555555555 5666666666555443 234555666666677
Q ss_pred hcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 041384 380 KCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 380 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 456 (580)
..|++++|...++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777766554 234566667778888888888888888888752 33567788888888889999999999
Q ss_pred HHHHHHhhC-------CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 457 FNNVMKEKK-------IALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 457 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
++++++... .+....++..+..+|...|++++|...+++.. .+.+...+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888766321 13345678888889999999999999888872 334677888899999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHH-HhcCChH
Q 041384 528 LIEAEPENAANYTLLSMVC-SESGNWL 553 (580)
Q Consensus 528 ~~~~~~~~~~~~~~l~~~~-~~~g~~~ 553 (580)
+.+..|.++..+..++.++ ...|+.+
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999888 4556544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.4e-18 Score=159.54 Aligned_cols=266 Identities=13% Similarity=0.062 Sum_probs=229.8
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 041384 296 KDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALM 375 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 375 (580)
.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356677788888999999999999999998764 3445566677788899999999999999999865 45677888899
Q ss_pred HHhHhcC-CHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 041384 376 NMYSKCG-SITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451 (580)
Q Consensus 376 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 451 (580)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998765 356789999999999999999999999999863 334577778899999999999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCCHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M----------KPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
+|...++++++ ..+.+...+..++..+...|++++|...++++. . +.+..++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999765 234457788999999999999999999998772 1 3346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|+..++++.+..|.++.++..++.++...|++++|.+.++++.+..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999876654
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.3e-15 Score=158.31 Aligned_cols=383 Identities=10% Similarity=0.080 Sum_probs=275.1
Q ss_pred CHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCC-CCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHH
Q 041384 128 KAELLAGIISLCSQIGELELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGC 206 (580)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 206 (580)
++.-.....++|...|.+.++.+++++++-.+. +..+....+.++.+..+. +..+...+..+...-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 444456667778888888888888888875432 223455666677666666 4455666655554222 45567778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHH
Q 041384 207 IDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPA 286 (580)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 286 (580)
...|.+++|..+|++.. -.....+.++ ...+++++|.++.++. .++.+|..+..++...|+ +++|
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~-~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM-VKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC-HHHH
Confidence 88888899988888752 1112222222 2567788887777654 346778888888888888 8888
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC
Q 041384 287 RIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF 366 (580)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 366 (580)
...|.+. .|...|..++.++.+.|++++|.+.|...++.. +++...+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 8888765 567778888889999999999999988776654 33333345888888888877544432 1 34
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 446 (580)
+...+..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|.-+..+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5566667888888899999999999885 48888999999999999999888876 355788888888888
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIH--GRLEVAE 522 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--~~~~~A~ 522 (580)
.|++..|...... +..++..+..++..|.+.|.+++|+.+++.. ...| ....|..+...|.+. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888876553 3345666778999999999999999999776 3333 445666666666654 4566666
Q ss_pred HHHHHHHhcCC-----CCchHHHHHHHHHHhcCChHHHHH
Q 041384 523 MLAHQLIEAEP-----ENAANYTLLSMVCSESGNWLGAEE 557 (580)
Q Consensus 523 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 557 (580)
+.|..-....| .++..|..++-.|.+.|+++.|..
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66665555444 577889999999999999999884
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=2.2e-16 Score=156.95 Aligned_cols=366 Identities=11% Similarity=-0.004 Sum_probs=247.3
Q ss_pred CHhhHHHHHHHhhc----cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHh----cCCHHHHHHHHhcCCCC-Ceeh
Q 041384 128 KAELLAGIISLCSQ----IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSK----CHHWLIALRVFEQMVIR-NEVS 198 (580)
Q Consensus 128 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~ 198 (580)
++..+..+-..+.. .++++.|...+++..+.| +...+..|...|.. .++.++|...|++.... +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44444444444444 566666666666665544 33455555555555 56666666666655332 4445
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhcCCCchhHHH
Q 041384 199 WTAMISGCID----SQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE----LRDLRNGKAIHGYAYCCGFDFDHHLSA 270 (580)
Q Consensus 199 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (580)
+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...++...+.|
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--------- 181 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--------- 181 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 5555555655 566777777777666553 34445555555544 556666666666555432
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 041384 271 ALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQ----SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR- 345 (580)
Q Consensus 271 ~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 345 (580)
+...+..+...|.. .++.++|...|++..+.| +...+..+...+..
T Consensus 182 --------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 232 (490)
T 2xm6_A 182 --------------------------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG 232 (490)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred --------------------------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 33334444445554 677888888888777654 44555566666654
Q ss_pred ---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhc-----
Q 041384 346 ---QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK----CGSITSSHQIFNEMAA-RDFVSWTTLISGYGFH----- 412 (580)
Q Consensus 346 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~----- 412 (580)
.++.++|..+++...+.+ ++..+..+...|.. .++.++|...|++..+ .+...+..+...|...
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Confidence 678888888888777654 34455566666666 7888888888887765 3556777777777776
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh----cCC
Q 041384 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG---LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK----SGK 485 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 485 (580)
+++++|+..+++..+.| +...+..+...+...| ++++|.+.|++..+ . .+...+..+...|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998864 4556666777776655 78999999999765 2 356678888888888 889
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 041384 486 IEDACKVVSTMPMKPSTRILSSLVSACRI----HGRLEVAEMLAHQLIEAEPE---NAANYTLLSMVCSE 548 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 548 (580)
+++|...|++.....++..+..+...|.. .++.++|...++++.+.+|+ ++.....++..+..
T Consensus 383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999988434567788888888887 89999999999999999854 77777777765543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=3.9e-16 Score=156.82 Aligned_cols=422 Identities=8% Similarity=-0.011 Sum_probs=285.8
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--C
Q 041384 117 FREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R 194 (580)
Q Consensus 117 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 194 (580)
|++..+.. +-+...|..++.. .+.|+++.|..+++++++.. |.+...|..++..+.+.|++++|..+|++... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 34444432 2367788888874 67899999999999998874 77888899999999999999999999998744 4
Q ss_pred CeehHHHHHHHH-HhcCChhHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHhc---------CCCchhHHHHHHHHH
Q 041384 195 NEVSWTAMISGC-IDSQNYDTGID----LFRAMQRE-GVKP-TRVTLTIVLLACAE---------LRDLRNGKAIHGYAY 258 (580)
Q Consensus 195 ~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 258 (580)
+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 555666666433 34677777665 66665543 5444 34455555554433 567888888888887
Q ss_pred HhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH------HHCC---C
Q 041384 259 CCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRM------RLER---I 329 (580)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~~---~ 329 (580)
+.........+..........+. ..+..+ +. ...+++..|..++..+ .+.. +
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~--~~~~~~---------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI--HLAKKM---------------IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH--HHHHHH---------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch--hHHHHH---------------HH--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 73111111222222111111110 011111 10 1234456666666552 2211 2
Q ss_pred CCCH--------HHHHHHHHHhhc----cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHhHh-------cCCHH-
Q 041384 330 EPNS--------VTLLAILSSCTR----QSFL----SHGLGVHCYIMKAGLNFDVSIGNALMNMYSK-------CGSIT- 385 (580)
Q Consensus 330 ~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 385 (580)
+|+. ..|...+..... .++. .++..+|+...... +.++..|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 4431 334443332221 1232 36777888888753 4567788888887775 68887
Q ss_pred ------HHHHHHhcCCC---C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCCHHHH
Q 041384 386 ------SSHQIFNEMAA---R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD-A-ITVLAILSACNHAGLVKEA 453 (580)
Q Consensus 386 ------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~~~~~~a 453 (580)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999998764 3 4668889999999999999999999999984 664 3 4788888888889999999
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 454 ETLFNNVMKEKKIALAIEHYACYVDL-LGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
..+|+++++.. +.+...+...+.. +...|+.++|..+|++. ...| ++..|..++..+.+.|+.++|..+|+++..
T Consensus 376 ~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999977532 2223333332222 34689999999999987 3334 678899999999999999999999999999
Q ss_pred cCCCCch----HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 531 AEPENAA----NYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 531 ~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..|.++. +|...+......|+.+.+..+.+++.+.-
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8876655 78888888888999999999999887643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=8e-16 Score=152.89 Aligned_cols=362 Identities=12% Similarity=0.017 Sum_probs=283.4
Q ss_pred HHHHHHHHHhCCCCCchHHHhHHHHHhHh----cCCHHHHHHHHhcCCC-CCeehHHHHHHHHHh----cCChhHHHHHH
Q 041384 149 RQIHALVIVDGSFELSVFVSTALLDLYSK----CHHWLIALRVFEQMVI-RNEVSWTAMISGCID----SQNYDTGIDLF 219 (580)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 219 (580)
...+....+.| +...+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|.+.|
T Consensus 27 ~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 27 LEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 34444444433 56667777777777 7888889888887643 356677778888887 88888899888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 041384 220 RAMQREGVKPTRVTLTIVLLACAE----LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKV 295 (580)
Q Consensus 220 ~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 295 (580)
++..+.| +...+..+...|.. .+++++|...++...+.|
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------------------- 145 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------------------------------- 145 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------
Confidence 8887764 45556666666666 677888888877766553
Q ss_pred CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCc
Q 041384 296 KDVVIWSSIIRGYSQ----SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR----QSFLSHGLGVHCYIMKAGLNFD 367 (580)
Q Consensus 296 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 367 (580)
+...+..+...|.. .++.++|...|++..+.| +...+..+...+.. .++.++|..+++...+.+ +
T Consensus 146 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 218 (490)
T 2xm6_A 146 -RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---D 218 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---C
Confidence 23334445555555 778999999999998875 56777777777776 899999999999998875 4
Q ss_pred hhHHHHHHHHhHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041384 368 VSIGNALMNMYSK----CGSITSSHQIFNEMAA-RDFVSWTTLISGYGF----HGYGEEALQLFLEMQESGVEPDAITVL 438 (580)
Q Consensus 368 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~ 438 (580)
+..+..+...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+.
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~ 295 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQY 295 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHH
Confidence 5667777777876 8899999999998766 466677778888887 899999999999998764 456666
Q ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHH
Q 041384 439 AILSACNHA-----GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG---KIEDACKVVSTMPMKPSTRILSSLVS 510 (580)
Q Consensus 439 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~ 510 (580)
.+...+... +++++|...+++..+ .+ +...+..+...|...| +.++|++.|++.....++..+..+..
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 371 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGN 371 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 899999999999765 33 3456777888887766 78999999998854467888999999
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 041384 511 ACRI----HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE----SGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 511 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (580)
.|.. .+++++|...++++.+.+ ++.++..|+..|.. .+++++|...|++..+.+.
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9988 899999999999999865 68889999999998 8999999999999988774
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.3e-14 Score=151.00 Aligned_cols=469 Identities=12% Similarity=0.093 Sum_probs=327.8
Q ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCC-chHHHHh---hccC------CCCCcc----
Q 041384 30 LPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSK-PESAYQL---FDEM------PYRDTI---- 95 (580)
Q Consensus 30 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~---~~~~------~~~~~~---- 95 (580)
...++..+-+..++ .....+++.-...| ..++.++|+|...|...++ ++.-+.- ++.. .++|+.
T Consensus 842 ~~~lv~~~ekrnrL-kll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 842 TDELVAEVEKRNRL-KLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHH
Confidence 34444444455555 55566667666666 6788999999999987654 3332210 0000 011111
Q ss_pred ------chHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCC--CCchHH
Q 041384 96 ------SWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSF--ELSVFV 167 (580)
Q Consensus 96 ------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 167 (580)
.-.-||+..-+++-+...-+.+ .++ -|+..|..++. .+-+.-+++.++..... + ..++.-
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~aryl---v~r---~d~~lW~~vl~-----~~n~~RR~Lidqv~a~a-L~e~~~Pee 987 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYL---VRR---KDPELWGSVLL-----ESNPYRRPLIDQVVQTA-LSETQDPEE 987 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHH---HHh---cCHHHHHHHhc-----CCcHHHHHHHHHHHHhh-cccccCHHH
Confidence 1223444444444433221111 111 25555655552 12223334555544332 1 223444
Q ss_pred HhHHHHHhHhcCCHHHHHHHHhcCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 168 STALLDLYSKCHHWLIALRVFEQMVIR------NEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLAC 241 (580)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 241 (580)
....+..|...|.+.+|++++++..-. +...-+.++.+..+. +..+..+...++... + ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 566778888999999999999998432 234566677777777 567777777665522 1 23366778
Q ss_pred hcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 041384 242 AELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLF 321 (580)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 321 (580)
...|.+++|..+|++.. ......+.++. ..++ ++.|.++.++. .+..+|..+..++...|++++|...|
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~n-ldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGN-LDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhh-HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88999999999999852 11222233333 4455 88888888766 35778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcch
Q 041384 322 SRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVS 401 (580)
Q Consensus 322 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 401 (580)
.+. -|...|..++.+|.+.|++++|.+++...++.. +++...+.++.+|++.+++++...+. ..++...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 663 567788899999999999999999999888765 33333445889999999999755554 3456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (580)
|..+...|...|++++|...|... ..|..+...+.+.|+++.|.+.++++ .+..+|..+..+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHh
Confidence 888999999999999999999985 47899999999999999999999984 34578999999999
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc--CChHHHHHHH
Q 041384 482 KSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES--GNWLGAEEVW 559 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 559 (580)
..|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.++|.+...|..++.+|.+. ++..++.++|
T Consensus 1262 e~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999877753 456667779999999999999999999999999999999998888887764 3555555555
Q ss_pred H
Q 041384 560 R 560 (580)
Q Consensus 560 ~ 560 (580)
.
T Consensus 1340 ~ 1340 (1630)
T 1xi4_A 1340 W 1340 (1630)
T ss_pred H
Confidence 4
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=5.8e-17 Score=151.03 Aligned_cols=371 Identities=12% Similarity=0.101 Sum_probs=134.7
Q ss_pred HcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHH
Q 041384 74 AKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHA 153 (580)
Q Consensus 74 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 153 (580)
.+.|+.++|.+.++++..| ..|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567788888888888655 48888888888888888888888642 577788888888888888888888777
Q ss_pred HHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041384 154 LVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVT 233 (580)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 233 (580)
...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..
T Consensus 86 ~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 76664 34477788888889999998888877753 66678888888888888888888888866 46
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 041384 234 LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGD 313 (580)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (580)
|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+ ++.|......+. .++.....++..|.+.|+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE-FRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC-HHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCc-HHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 788888888888888887777665 134444444455554444 444433333222 222223334445555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh--cCCHHHHHHHH
Q 041384 314 LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSK--CGSITSSHQIF 391 (580)
Q Consensus 314 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~ 391 (580)
+++|..+++... ... +....+|+-+.-+|++ .+++.+..+.|
T Consensus 223 ~eEai~lLe~aL-----------------------------------~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAAL-----------------------------------GLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHT-----------------------------------TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----------------------------------CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 555555555444 322 2233333333333332 23333444444
Q ss_pred hcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH---HHHHHHHHH
Q 041384 392 NEMAA--------RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK---EAETLFNNV 460 (580)
Q Consensus 392 ~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~ 460 (580)
..-.. .+...|.-+...|...++++.|.. .|.+. +|+...-....+...+..+.+ +|..++-.
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~- 340 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE- 340 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-
Confidence 32221 145677777778888888887765 34443 233222222223333333333 23333221
Q ss_pred HHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041384 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-------------MKPSTRILSSLVSACRIHGRLEVAEML 524 (580)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------~~p~~~~~~~l~~~~~~~~~~~~A~~~ 524 (580)
..|. .++.|+.++...=+...+..+|++.. ...+..+-.++-..|....|++.-...
T Consensus 341 -----~~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 341 -----FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp -----HCGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----cCHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 1222 25556666665666666666666553 112233334455555666666544433
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.9e-17 Score=154.23 Aligned_cols=286 Identities=10% Similarity=0.008 Sum_probs=128.4
Q ss_pred hcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHH
Q 041384 177 KCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGY 256 (580)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (580)
+.|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5566777777777775443 777788888888888888877754 25666777777788778888888887766
Q ss_pred HHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 041384 257 AYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTL 336 (580)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 336 (580)
..+. .+++.+...++.+|.+.|+ +..+.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNR-LAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------------C-HHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 6653 3346667777788888877 7777766653 56668888888899999999999998876 368
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 041384 337 LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGE 416 (580)
Q Consensus 337 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (580)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888889999999988888877 367888888899999999999977766654 44444556888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhhCCCC------ChhHHHHHHHHhhhcCChHH
Q 041384 417 EALQLFLEMQESGVEPDAITVLAILSACNH--AGLVKEAETLFNNVMKEKKIAL------AIEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 488 (580)
+|+.+++...... +-....|+-+.-++++ .++..+.++.|.. +-+++| +...|..++..|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999998887643 3344556655555554 4455555555543 234555 46678888888899999998
Q ss_pred HHHHHHhC
Q 041384 489 ACKVVSTM 496 (580)
Q Consensus 489 A~~~~~~~ 496 (580)
|....-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 88766554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=3e-17 Score=157.06 Aligned_cols=260 Identities=13% Similarity=-0.008 Sum_probs=217.2
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567788888999999999999999998774 4567788888889999999999999999988875 456778888899
Q ss_pred HhHhcCCHHHHHHHHhcCCCC---CcchHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCC---CHH
Q 041384 377 MYSKCGSITSSHQIFNEMAAR---DFVSWTT---------------LISGYGFHGYGEEALQLFLEMQESGVEP---DAI 435 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~ 435 (580)
+|...|++++|...++++... +...+.. .+..+...|++++|...++++.+. .| +..
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~ 218 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPD 218 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHH
Confidence 999999999999999877652 2222211 133344889999999999999986 44 478
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACR 513 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 513 (580)
++..+...+...|++++|...++++++. .+.+...+..++..+...|++++|+..++++ . .+.+...+..+...+.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999997763 2345778999999999999999999999987 2 3446788999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 514 IHGRLEVAEMLAHQLIEAEPEN-----------AANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+.|++++|...++++.+..|.+ ..+|..++.+|...|++++|..++++.
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999998877 889999999999999999999987643
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.1e-17 Score=156.72 Aligned_cols=261 Identities=11% Similarity=-0.018 Sum_probs=215.9
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998775 4577889999999999999999999999999875 456788999999
Q ss_pred HhHhcCCHHHHHHHHhcCCCCC-------------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAARD-------------FVSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PDAITVLAILS 442 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~ 442 (580)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999886521 123344578899999999999999999986321 15788999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 041384 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 520 (580)
.+...|++++|...++++++. .+.+..++..++.+|...|++++|+..|+++ ...| +..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998763 3445778999999999999999999999988 3344 57889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 521 AEMLAHQLIEAEPE------------NAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 521 A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
|...++++.+..|. +..+|..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998866 477899999999999999999887765
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=8.8e-16 Score=152.24 Aligned_cols=356 Identities=10% Similarity=-0.049 Sum_probs=176.2
Q ss_pred HHHhHHHHHhHhcCCHHHHHHHHhcC-------CCC----CeehHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCH-
Q 041384 166 FVSTALLDLYSKCHHWLIALRVFEQM-------VIR----NEVSWTAMISGCID--SQNYDTGIDLFRAMQREGVKPTR- 231 (580)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~----~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~- 231 (580)
.+|+.+..+|...|++++|...+++. ..+ ...++..+..++.. .+++++|++.|++..+. .|+.
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~ 172 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNP 172 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCH
Confidence 34555555555555555555555433 111 12234333334433 34567777777776654 3332
Q ss_pred HHHHHHHHH---HhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 041384 232 VTLTIVLLA---CAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGY 308 (580)
Q Consensus 232 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 308 (580)
..+..+..+ +...++.++|...+++.++.... +..++..+...+... +
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~----------------------------~ 223 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKM----------------------------R 223 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHC----------------------------C
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHH----------------------------H
Confidence 222222222 33445556666666655554322 111121121111111 1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH
Q 041384 309 SQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH 388 (580)
Q Consensus 309 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 388 (580)
...+++++|...+++..... +.+...+..+...+...|++++|...++...+.. +-+..++..+..+|...+....+
T Consensus 224 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~- 300 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN- 300 (472)
T ss_dssp ------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh-
Confidence 13355666777776665543 3445566667777777777777777777766653 23444455554444322111110
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 041384 389 QIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468 (580)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 468 (580)
.. . ..........+.++.|...+++..+.. +.+..++..+...+...|++++|...|+++++ ....+
T Consensus 301 ----~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~ 367 (472)
T 4g1t_A 301 ----LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTP 367 (472)
T ss_dssp ----C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCH
T ss_pred ----HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCC
Confidence 00 0 000001111223567777777777642 22445667777788888888888888888665 22222
Q ss_pred Ch--hHHHHHHH-HhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 469 AI--EHYACYVD-LLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 469 ~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.. ..+..+.. .+...|+.++|+..|++. .+.|+..... +....+..++++..+.+|.++.+|..++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~ 438 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAF 438 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 12222322 234678888888888776 4556543322 22345667788888999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCccCCceeEEE
Q 041384 545 VCSESGNWLGAEEVWRVMRAKGLSKSYGFSRIE 577 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 577 (580)
+|...|++++|++.+++.++.+.......+|++
T Consensus 439 ~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 439 LQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999998877666677763
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=4.2e-17 Score=153.19 Aligned_cols=262 Identities=8% Similarity=-0.078 Sum_probs=217.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677788889999999999999988764 4467788888889999999999999999998874 446778888899
Q ss_pred HhHhcCCHHHHHHHHhcCCCC---CcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAAR---DFVSWTTL--------------IS-GYGFHGYGEEALQLFLEMQESGVEPDAITVL 438 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 438 (580)
.|...|++++|...++++... +...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999887652 22333333 22 3677889999999999999863 33678899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHG 516 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~ 516 (580)
.+...+...|++++|...++++++. .+.+...+..++..+...|++++|...++++ . .+.+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999997763 2345778899999999999999999999987 2 3446788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 517 RLEVAEMLAHQLIEAEPE------------NAANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
++++|...++++.+..|. ++..+..++.++...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999998 78899999999999999999999987543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=4e-15 Score=149.42 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=124.5
Q ss_pred ChhhHHHHHHHHHh-------CCChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 041384 297 DVVIWSSIIRGYSQ-------SGDLS-------EAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA 362 (580)
Q Consensus 297 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 362 (580)
+...|......+.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45566666665554 67766 67777776664211223455555555555666666666666665553
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 041384 363 GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAIL 441 (580)
Q Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~ 441 (580)
.|+.. ...|..++..+.+.|++++|..+|++..+. .| +...|....
T Consensus 351 --~p~~~-----------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 351 --EDIDP-----------------------------TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp --SSSCH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred --cccCc-----------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 22110 024444555555566666677777666654 23 223332222
Q ss_pred HH-HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHh
Q 041384 442 SA-CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP----MKPS--TRILSSLVSACRI 514 (580)
Q Consensus 442 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~ 514 (580)
.. +...|++++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|++.. ..|+ ...|...+.....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 22 234778888888888877643 2346677778888888888888888887762 1221 3377777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 041384 515 HGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~ 534 (580)
.|+.+.+..+.+++.+..|.
T Consensus 476 ~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SSCHHHHHHHHHHHHHHTHH
T ss_pred cCCHHHHHHHHHHHHHHCch
Confidence 89999998888888888774
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=5.1e-17 Score=148.69 Aligned_cols=270 Identities=10% Similarity=-0.002 Sum_probs=207.0
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCh
Q 041384 274 HMYCECTEALHPARIIFERTKVKDV----VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFL 349 (580)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 349 (580)
.-....|. ...+....+.....++ .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~-y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGS-YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTC-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHH-HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 34455677 8888888877654432 23455678999999999998866542 356777888888899999999
Q ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 041384 350 SHGLGVHCYIMKAGLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES 428 (580)
Q Consensus 350 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (580)
++|.+.++.+...+..| ++..+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999998877545 566677777889999999999999998 456778888899999999999999999999886
Q ss_pred CCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHH
Q 041384 429 GVEPDAITV---LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STR 503 (580)
Q Consensus 429 g~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 503 (580)
.|+.... ..++..+...|++++|..+|+++++. .+.+...++.+..++.+.|++++|...++++ ...| ++.
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4654322 12334445668999999999997763 4567788888999999999999999999887 3344 677
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 041384 504 ILSSLVSACRIHGRLEV-AEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
++..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 88888888888888865 57888999999999888654 34455555555543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.2e-15 Score=139.60 Aligned_cols=248 Identities=10% Similarity=0.076 Sum_probs=200.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLERIEPNS--VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG 382 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 382 (580)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999988876533 4443 3556678899999999999976654 24667888888999999999
Q ss_pred CHHHHHHHHhcCCC----C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 383 SITSSHQIFNEMAA----R-DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 383 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
+.++|.+.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 455677778899999999999999987 457788888999999999999999999
Q ss_pred HHHHHhhCCCCChhHH---HHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 458 NNVMKEKKIALAIEHY---ACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
+++++. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++.+.|++++|+..++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 997763 2553211 223344556689999999999983 45678899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Q 041384 533 PENAANYTLLSMVCSESGNWLG-AEEVWRVMRAKGL 567 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 567 (580)
|.++.++..++.++...|+.++ +.++++++.+..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999976 5788898887654
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.1e-16 Score=152.78 Aligned_cols=232 Identities=9% Similarity=0.002 Sum_probs=196.2
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHH
Q 041384 332 NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISG 408 (580)
Q Consensus 332 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 408 (580)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...+..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 45788899999999999999999999998875 356789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDA-----------ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|...++++++.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 3432 2233457788999999999999999887543333688899999
Q ss_pred HHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 041384 478 DLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 555 (580)
..|...|++++|++.++++. .+.+..+|..+...|...|++++|+..++++.+..|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999882 3457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 041384 556 EEVWRVMRAKG 566 (580)
Q Consensus 556 ~~~~~~~~~~~ 566 (580)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987754
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.1e-16 Score=153.01 Aligned_cols=256 Identities=11% Similarity=0.038 Sum_probs=204.0
Q ss_pred HHhCCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 308 YSQSGDLSEAMK-LFSRMRLERI-EP--NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 308 ~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
+...|++++|.. .+++...... .| +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 7776543321 11 34567788889999999999999999999875 4577888999999999999
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH---------------HHHHH
Q 041384 384 ITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA-ITVLA---------------ILSAC 444 (580)
Q Consensus 384 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~---------------l~~~~ 444 (580)
+++|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+. ..+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998765 46678999999999999999999999999985 3433 22211 23334
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
...|++++|...++++++.....++..++..++..|.+.|++++|+..++++. .+.+...+..++..+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999987744333357889999999999999999999999872 3446789999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..++++.+..|.++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999987754
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.4e-15 Score=132.99 Aligned_cols=216 Identities=12% Similarity=-0.005 Sum_probs=143.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-C-------cchHHHHHH
Q 041384 338 AILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-D-------FVSWTTLIS 407 (580)
Q Consensus 338 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~l~~ 407 (580)
.+...+...|++++|...++...+.. .+...+..+..+|...|++++|...+++..+ | + ...+..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33334444444444444444444433 3344444444444444444444444444332 1 1 345666777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChH
Q 041384 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (580)
.+...|++++|...+++..+. .|+.. .+...|++++|...++++++ ..+.+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHH
Confidence 777777777777777777774 45532 34556777888888887554 22334566777788888888888
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 488 DACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 488 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+|...+++.. .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.++...|++++|.+.+++..+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888772 34467788888888888899999999999998888888888888999998999999999888887664
Q ss_pred C
Q 041384 566 G 566 (580)
Q Consensus 566 ~ 566 (580)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 4
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2.9e-15 Score=130.86 Aligned_cols=195 Identities=13% Similarity=0.003 Sum_probs=155.2
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 041384 365 NFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAI 440 (580)
Q Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l 440 (580)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677778888888999999999999998765 35567888899999999999999999999986 45 56788888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 041384 441 LSACNHA-----------GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPSTRILSSL 508 (580)
Q Consensus 441 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 508 (580)
...+... |++++|+..++++++. .+-+...+..+..+|...|++++|+..|++.. ...++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8889999 9999999999997762 22346778889999999999999999999872 12788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
...+...|++++|+..++++.+.+|.++.++..++.++...|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998753
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.8e-14 Score=135.16 Aligned_cols=265 Identities=9% Similarity=-0.067 Sum_probs=175.4
Q ss_pred CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHH
Q 041384 93 DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALL 172 (580)
Q Consensus 93 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 172 (580)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 44556677777888888888888888887753 2356677777777888888888888888887765 55667777777
Q ss_pred HHhHhcCCHHHHHHHHhcCCC--C-CeehHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041384 173 DLYSKCHHWLIALRVFEQMVI--R-NEVSWTAM--------------IS-GCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234 (580)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (580)
..+...|++++|...++++.. | +...+..+ .. .+...|++++|.+.++++.+.. +.+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 777788888888777776522 1 22222222 11 2555666777777777766542 2245566
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 041384 235 TIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDL 314 (580)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (580)
..+...+...|++++|...++.+.+... .+...+..+...+...|++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP---------------------------------DDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC---------------------------------CcHHHHHHHHHHHHHcCCH
Confidence 6666666666776666666666544321 2344566677777777888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC-----------chhHHHHHHHHhHhcCC
Q 041384 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF-----------DVSIGNALMNMYSKCGS 383 (580)
Q Consensus 315 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~ 383 (580)
++|...+++..+.. +.+..++..+...+...|++++|...++...+..... +...+..+..++.+.|+
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 88888887776653 3456677777777777888888888887777643221 45666677777777777
Q ss_pred HHHHHHHHhcCC
Q 041384 384 ITSSHQIFNEMA 395 (580)
Q Consensus 384 ~~~A~~~~~~~~ 395 (580)
.++|..++++..
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 777777776544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.4e-17 Score=162.06 Aligned_cols=150 Identities=10% Similarity=0.047 Sum_probs=121.9
Q ss_pred CCchHHHhHHHHHhHhcCCHHHHHHHHhcC-------CCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 041384 162 ELSVFVSTALLDLYSKCHHWLIALRVFEQM-------VIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTL 234 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (580)
..-..+|++||++|++.|++++|.++|++| ..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999765 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCc-hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC-----ChhhHHHHHHHH
Q 041384 235 TIVLLACAELRDL-RNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVK-----DVVIWSSIIRGY 308 (580)
Q Consensus 235 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~ 308 (580)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+- ++..++++.....+ .+.+...|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v-L~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV-LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH-HHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH-HHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999885 7889999999999999999999988888777655 56665554444321 133444455566
Q ss_pred HhCC
Q 041384 309 SQSG 312 (580)
Q Consensus 309 ~~~~ 312 (580)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=6.5e-14 Score=138.77 Aligned_cols=385 Identities=14% Similarity=0.015 Sum_probs=197.4
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHhhccCCcHHHHHHHHHHHHhC-----CC-
Q 041384 96 SWNSIINCFTQNGFYVRSLEMFREMYLC-----G--FVL-KAELLAGIISLCSQIGELELGRQIHALVIVDG-----SF- 161 (580)
Q Consensus 96 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~- 161 (580)
.||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++++.+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444444444455555555544443221 0 111 23345555555555555555555555544321 00
Q ss_pred CCchHHHhHHHHHhHhc--CCHHHHHHHHhcCC--CC-CeehHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 041384 162 ELSVFVSTALLDLYSKC--HHWLIALRVFEQMV--IR-NEVSWTAMISG---CIDSQNYDTGIDLFRAMQREGVKPTRVT 233 (580)
Q Consensus 162 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~--~~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 233 (580)
.....++..+..++... +++++|+..|++.. .| +...+..+..+ +...++.++|++.+++..+.+. .+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHH
Confidence 11233444444444333 35667777776652 23 33333333333 3456777888888888776532 23444
Q ss_pred HHHHHHHHh----cCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 041384 234 LTIVLLACA----ELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTKVKDVVIWSSIIRGYS 309 (580)
Q Consensus 234 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 309 (580)
+..+...+. ..++.++|.+.++...+... .+...+..+...|.
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---------------------------------~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---------------------------------GVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCS---------------------------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---------------------------------cHHHHHHHHHHHHH
Confidence 444444433 34566777777766655432 24456677778888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 041384 310 QSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389 (580)
Q Consensus 310 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 389 (580)
..|++++|...+++..+.. +-+..++..+..++...+.. ..... . ..........+..+.|..
T Consensus 259 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~ 321 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVA 321 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHH
Confidence 8999999999999887663 33445555554444221110 00000 0 000001111233566777
Q ss_pred HHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH-HHhccCCHHHHHHHHHHHHHh
Q 041384 390 IFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA--ITVLAILS-ACNHAGLVKEAETLFNNVMKE 463 (580)
Q Consensus 390 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 463 (580)
.+++..+ .+...+..+...+...|++++|+..|++..+....|.. ..+..+.. .....|++++|+..|+++++
T Consensus 322 ~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~- 400 (472)
T 4g1t_A 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK- 400 (472)
T ss_dssp HHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 7766543 45678889999999999999999999999885433222 12233332 23578999999999999775
Q ss_pred hCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 464 KKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
+.|+........ ..+.++++.. . .+.++.+|..+...|...|++++|++.++++++.+|.+|.+...
T Consensus 401 --i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 401 --INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 455543322222 2233333333 1 34577899999999999999999999999999999988887665
Q ss_pred HH
Q 041384 542 LS 543 (580)
Q Consensus 542 l~ 543 (580)
++
T Consensus 470 ~G 471 (472)
T 4g1t_A 470 NG 471 (472)
T ss_dssp --
T ss_pred CC
Confidence 54
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.2e-17 Score=163.01 Aligned_cols=147 Identities=7% Similarity=-0.007 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHcCCCchHHHHhhccCC-------CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 041384 63 PVISNSLISMYAKFSKPESAYQLFDEMP-------YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGI 135 (580)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 135 (580)
..+||+||++|++.|++++|.++|+.|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 689999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCc-HHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC-----CeehHHHHHHHHHhc
Q 041384 136 ISLCSQIGEL-ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR-----NEVSWTAMISGCIDS 209 (580)
Q Consensus 136 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~ 209 (580)
|.++++.|.. +.|.+++++|.+.| +.||..+|+.++....+.+-++.+.++...+..+ ...+.+.|.+.|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 9999999985 78999999999999 9999999999998877765555555554444221 233444555666554
Q ss_pred C
Q 041384 210 Q 210 (580)
Q Consensus 210 ~ 210 (580)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.7e-15 Score=131.80 Aligned_cols=236 Identities=10% Similarity=-0.032 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCC--CCc----hhHHH
Q 041384 299 VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGL--NFD----VSIGN 372 (580)
Q Consensus 299 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 372 (580)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456778888999999999999999998887 7788999999999999999999999999887432 122 57888
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHH
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVK 451 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~ 451 (580)
.+...|...|++++|...|++..+.+.. ...+...|++++|...++++... .| +...+..+...+...|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 8999999999999999999988763222 34566778899999999999985 45 4477888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
+|...++++++. .+.+...+..+..+|...|++++|...+++.. .+.+...+..+...+...|++++|...++++.
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999997763 23457788999999999999999999999882 34467889999999999999999999999999
Q ss_pred hcC------CCCchHHHHHHHH
Q 041384 530 EAE------PENAANYTLLSMV 545 (580)
Q Consensus 530 ~~~------~~~~~~~~~l~~~ 545 (580)
+.. |.+..++..+..+
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhChhhcCCCchHHHHHHHHHh
Confidence 998 8888877776654
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=2.3e-13 Score=132.94 Aligned_cols=376 Identities=10% Similarity=0.015 Sum_probs=201.4
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCH---HHHHHHHhcCCCCCeehHHHHHHHHHhcC-
Q 041384 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW---LIALRVFEQMVIRNEVSWTAMISGCIDSQ- 210 (580)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~- 210 (580)
+...+.+.|++++|.+++.+..+.| +...+..|...|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 3445556678888888888877766 233445566666667777 88888888886666677777777555555
Q ss_pred ----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCch---hHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC--
Q 041384 211 ----NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLR---NGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE-- 281 (580)
Q Consensus 211 ----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 281 (580)
++++|+..|++..+.|... .+..+...|...+..+ .+.+.+....+.|. ......+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 6788999998888865432 4445555555444333 33333333333332 2222222222222221
Q ss_pred -CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---ChHHHHHHHH
Q 041384 282 -ALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS---FLSHGLGVHC 357 (580)
Q Consensus 282 -~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~ 357 (580)
..+.+..++......++. .+..+...+...| +.++|...|+
T Consensus 159 ~~~~~a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 122222233333322333 4444444444455 5555555555
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhc----CCHHHHHHHHhcCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHcCC
Q 041384 358 YIMKAGLNFDVSIGNALMNMYSKC----GSITSSHQIFNEMAARDFVSWTTLISG-Y--GFHGYGEEALQLFLEMQESGV 430 (580)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~g~ 430 (580)
...+.| +++...+..+...|... ++.++|...|++....++..+..|... + ...+++++|+..|++..+.|
T Consensus 204 ~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 204 AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 555554 23333333344444333 566667766666553344555556555 3 35678888888888887765
Q ss_pred CCCHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCC
Q 041384 431 EPDAITVLAILSACNHAG-----LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK----SGKIEDACKVVSTMPMKPS 501 (580)
Q Consensus 431 ~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~ 501 (580)
+......|...|. .| ++++|...|++.. +-+......|...|.. ..+.++|...|++....-+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 5556666666665 44 8888888888743 3445566667766665 3478888888887743445
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 502 TRILSSLVSACRI----HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 502 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
......|...|.. ..+.++|...++++.+.+++.+......+......++.++|..+.++..+.
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5566666666653 457888888888888877655544444443334455777777777766553
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=4.7e-14 Score=128.65 Aligned_cols=242 Identities=9% Similarity=-0.041 Sum_probs=194.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH
Q 041384 309 SQSGDLSEAMKLFSRMRLERIE---PNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSIT 385 (580)
Q Consensus 309 ~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 385 (580)
...|++++|+..++++.+.... .+..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999876421 135678888889999999999999999999875 446788899999999999999
Q ss_pred HHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 386 SSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 386 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
+|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++.+.
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998775 36778999999999999999999999999985 56655555555666778999999999988766
Q ss_pred hhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 463 EKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKPS-----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
. .+++...+ .++..+...++.++|...+++.. ..|+ ...+..+...+...|++++|...++++.+.+|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 33444444 47777888888999999998873 2232 57888999999999999999999999999999886
Q ss_pred hHHHHHHHHHHhcCChHHHHHHH
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
..+ +.++...|++++|++.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 654 56777889999998876
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=6.1e-14 Score=127.70 Aligned_cols=246 Identities=9% Similarity=-0.043 Sum_probs=173.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFD--VSIGNALMNM 377 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 377 (580)
.+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455667778888888888888887663 23344677777788888888888888888877332222 2346777888
Q ss_pred hHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 041384 378 YSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEA 453 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a 453 (580)
+...|++++|...|++..+ .+...+..+...|...|++++|+..+++..+. .| +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887654 35567888888888888888888888888775 44 455666666344445588888
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCCHHH
Q 041384 454 ETLFNNVMKEKKIALAIEHYACYVDLLGKSGK---IEDACKVVSTMP----MKPS------TRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~~~~~~ 520 (580)
...++++++. .+.+...+..+..++...|+ +++|...+++.. ..|+ ...+..+...|...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888887652 22335666677777777777 666777766651 1233 2467778888889999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
|...++++.+.+|.++.++..+.......+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999998888877665443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=5.7e-13 Score=121.26 Aligned_cols=225 Identities=11% Similarity=-0.047 Sum_probs=141.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR----QSFLSHGLGVHCYIMKAGLNFDVSIGN 372 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 372 (580)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3444555555555666666666666655542 223344444444444 455555555555444433
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGF----HGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-- 446 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-- 446 (580)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444555555555 666666777766666643 55666666666666
Q ss_pred --cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 041384 447 --AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK----SGKIEDACKVVSTMPMKPSTRILSSLVSACRI----HG 516 (580)
Q Consensus 447 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 516 (580)
.+++++|...+++.++ .+ +...+..+...|.. .+++++|...|++.....+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 7777777777777554 22 34455666666666 77777777777766323355667777777777 78
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSE----SGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (580)
++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888887765 6677788888887 7888888888888777654
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.1e-13 Score=124.47 Aligned_cols=196 Identities=8% Similarity=-0.105 Sum_probs=126.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH 446 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 446 (580)
.+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 334444444555555555555554432 233455556666666667777777777666642 2245666666677777
Q ss_pred cCCHHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIAL-AIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEM 523 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~ 523 (580)
.|++++|..+++++++ .+..| +...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777554 22333 35556667777777777777777777662 23356667777777777788888888
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 524 LAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.++++.+..|.+...+..++.++...|++++|.++++++.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 88887777777777777777777778888888887777766543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.8e-13 Score=120.44 Aligned_cols=197 Identities=12% Similarity=0.015 Sum_probs=143.5
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555566666666666666665443 234466667777777788888888888777652 33566777777888
Q ss_pred hcc-CCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 041384 445 NHA-GLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 445 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
... |++++|...++++++ .+..|+ ...+..++.++...|++++|...++++. .+.+...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888665 222232 5667778888888888888888887762 23356778888888888888888
Q ss_pred HHHHHHHHHhcCC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 521 AEMLAHQLIEAEP-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 521 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|...++++.+..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 8888888888888 888888888888888888888888888876544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=7.4e-14 Score=124.72 Aligned_cols=196 Identities=14% Similarity=0.064 Sum_probs=113.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 33444445555555666665555555443 234455556666666666666666666666542 22455666666666
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
...|++++|...++++++. .+.+...+..++..+...|++++|...++++. .+.+...+..+...+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 6677777777777765542 22345556666666777777777777766652 2335566666777777777777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 523 MLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777777777777777777777777777777777766544
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1e-12 Score=118.05 Aligned_cols=209 Identities=13% Similarity=0.002 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (580)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 3445555666666666666666666665442 2234445555555555555555555555544432 1
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 041384 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 456 (580)
.+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233455566666777777777777777776633345 346677777788888888888888
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
++++++.. +.+...+..++..+...|++++|...++++ . .+.+...+..+...+...|+.++|.+.++++.+..|.
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 88866532 334667788888888889999998888887 2 3346677888888899999999999999999999999
Q ss_pred CchHHHH
Q 041384 535 NAANYTL 541 (580)
Q Consensus 535 ~~~~~~~ 541 (580)
++.....
T Consensus 242 ~~~~~~~ 248 (252)
T 2ho1_A 242 SLEYQEF 248 (252)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 8876543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2.1e-12 Score=126.08 Aligned_cols=213 Identities=10% Similarity=0.002 Sum_probs=117.6
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCc---hHHHHhhccCCCCCccchHHHHHHHHhCC-
Q 041384 33 VIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKP---ESAYQLFDEMPYRDTISWNSIINCFTQNG- 108 (580)
Q Consensus 33 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~- 108 (580)
+...+.+.|++ +.|..+|+...+.|. +..+..|...|...|+. ++|.+.|++....+...+..|...+...+
T Consensus 9 la~~~~~~g~~-~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDT-VTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCH-HHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 44556678899 999999999988873 33444555666667877 89999999887667777887777566655
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCCc---HHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCC-
Q 041384 109 ----FYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGEL---ELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH- 180 (580)
Q Consensus 109 ----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 180 (580)
++++|+..|++..+.|.. ..+..+-..|...+.. ..+.+.+......| +......|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence 678999999999887643 3555666666554443 33455555555444 34455566666666663
Q ss_pred ---HHHHHHHHhcCCCCCeehHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----CCchhH
Q 041384 181 ---WLIALRVFEQMVIRNEVSWTAMISGCIDSQ---NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAEL----RDLRNG 250 (580)
Q Consensus 181 ---~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a 250 (580)
.+.+..+++.....+..++..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++.++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444555555555555667777777777777 77778888777777653 3333333344444332 345555
Q ss_pred HHHHHHH
Q 041384 251 KAIHGYA 257 (580)
Q Consensus 251 ~~~~~~~ 257 (580)
...|+..
T Consensus 237 ~~~~~~a 243 (452)
T 3e4b_A 237 QALLEKI 243 (452)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.8e-12 Score=117.85 Aligned_cols=232 Identities=11% Similarity=-0.059 Sum_probs=162.4
Q ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 041384 265 DHHLSAALMHMYCECTEALHPARIIFERTKVK-DVVIWSSIIRGYSQ----SGDLSEAMKLFSRMRLERIEPNSVTLLAI 339 (580)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 339 (580)
+...+..+...+...++ .+.|...|++...+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKD-FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45667778888888898 99999999876644 56678888889999 999999999999998876 67777777
Q ss_pred HHHhhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 041384 340 LSSCTR----QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYG 415 (580)
Q Consensus 340 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (580)
...+.. .+++++|...++...+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 777877 888888888888777654 334444444444330 0005566
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh----cCChH
Q 041384 416 EEALQLFLEMQESGVEPDAITVLAILSACNH----AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK----SGKIE 487 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 487 (580)
++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+ .+ +...+..+...|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 66666666666643 44555555566655 6777777777777554 22 34556667777777 77777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCch
Q 041384 488 DACKVVSTMPMKPSTRILSSLVSACRI----HGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 488 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+|...+++.....+...+..+...|.. .+++++|...++++.+.+|+++.
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 777777766322235667777777777 78888888888888888876544
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=6.6e-13 Score=125.46 Aligned_cols=246 Identities=9% Similarity=0.015 Sum_probs=202.3
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSF-LSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
...|+.+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|+..++...+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467778888899999999999999998774 3456788888889999996 999999999999876 447788899999
Q ss_pred HhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc-cCCHH
Q 041384 377 MYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNH-AGLVK 451 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~~~~~ 451 (580)
++...|++++|...|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999998876 46678999999999999999999999999986 45 66888888888888 56657
Q ss_pred HH-----HHHHHHHHHhhCCCCChhHHHHHHHHhhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 041384 452 EA-----ETLFNNVMKEKKIALAIEHYACYVDLLGKSG--KIEDACKVVSTMPMKP-STRILSSLVSACRIHG------- 516 (580)
Q Consensus 452 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 516 (580)
+| +..++++++. .+-+...|..+..++...| ++++|++.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 5788887752 2334667888888888888 6899999988875444 5677888888888764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCchHHHHHHHHHHhc
Q 041384 517 --RLEVAEMLAHQL-IEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 517 --~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 549 (580)
..++|+.+++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 899999999999888776543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=4.3e-13 Score=122.00 Aligned_cols=230 Identities=10% Similarity=-0.027 Sum_probs=187.1
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcc----hHHHHHHH
Q 041384 335 TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFV----SWTTLISG 408 (580)
Q Consensus 335 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 408 (580)
.+......+...|++++|...++...+.. +.+...+..+..+|...|++++|...+++..+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556778889999999999999999865 34555788888899999999999999998766 3333 38889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 488 (580)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++++++. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863 335688999999999999999999999996652 33446677777734445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chHHHHHHHHHHhcCChHHH
Q 041384 489 ACKVVSTM-PMKP-STRILSSLVSACRIHGR---LEVAEMLAHQLIEAE---PEN-----AANYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 489 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 555 (580)
|.+.|+++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3344 56788888888888888 888999999998765 432 25788999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 041384 556 EEVWRVMRAKGLS 568 (580)
Q Consensus 556 ~~~~~~~~~~~~~ 568 (580)
.+.++++.+..+.
T Consensus 241 ~~~~~~al~~~p~ 253 (272)
T 3u4t_A 241 DAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCcc
Confidence 9999999886643
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.1e-13 Score=123.45 Aligned_cols=216 Identities=11% Similarity=0.062 Sum_probs=138.9
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNM 377 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (580)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~------------ 88 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-S------------ 88 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C------------
Confidence 3445555566666666666666666665432 2234445455555555555555555555444432 1
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 89 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 89 -------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 234456666677777788888888888877753 335677778888888889999999998
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
+++++. .+.+...+..++..+...|++++|...++++. .+.+..++..+...+...|++++|...++++.+..|.+
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 887653 23456678888888999999999999988872 34467788999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhc
Q 041384 536 AANYTLLSMVCSES 549 (580)
Q Consensus 536 ~~~~~~l~~~~~~~ 549 (580)
+..+..+.......
T Consensus 227 ~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 227 MLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHTC-----
T ss_pred HHHHHHHHHHHhhc
Confidence 99888776654433
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.6e-13 Score=130.48 Aligned_cols=266 Identities=13% Similarity=0.008 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHh----CCCC-ch
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN----SVTLLAILSSCTRQSFLSHGLGVHCYIMKA----GLNF-DV 368 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 368 (580)
...+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++..... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3345556667788888888888888887763 223 245667777888888888888888876652 2122 25
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHH
Q 041384 369 SIGNALMNMYSKCGSITSSHQIFNEMAA-----RD----FVSWTTLISGYGFHGY--------------------GEEAL 419 (580)
Q Consensus 369 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 419 (580)
.++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5667777888888899888888887654 12 2367778888888888 88888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHH
Q 041384 420 QLFLEMQES----GVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDAC 490 (580)
Q Consensus 420 ~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 490 (580)
..+++..+. +..|. ..++..+...+...|++++|...++++++...-.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888776542 11121 246777778888899999999998887653222222 336778888888999999998
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHhcCChHHHH
Q 041384 491 KVVSTMP----MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN------AANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 491 ~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 556 (580)
..+++.. ..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888762 1112 4567788888889999999999999888765332 567888899999999999999
Q ss_pred HHHHHHHh
Q 041384 557 EVWRVMRA 564 (580)
Q Consensus 557 ~~~~~~~~ 564 (580)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888755
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=8.9e-13 Score=111.93 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=143.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHH
Q 041384 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACY 476 (580)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 476 (580)
+...|..+...|...|++++|++.|++..+. .| +..++..+..++...|++++|...+..+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4557888889999999999999999998885 45 5678888889999999999999999986652 33446667778
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 041384 477 VDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
...+...++++.|...+.+.. .+.+...+..+...+.+.|++++|++.++++.+.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998872 344678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 041384 555 AEEVWRVMRAKGL 567 (580)
Q Consensus 555 A~~~~~~~~~~~~ 567 (580)
|++.+++.++..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987653
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=6.2e-13 Score=115.99 Aligned_cols=205 Identities=17% Similarity=0.086 Sum_probs=107.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45566667777777888888888888777553 3455667777777777777777777777777654 334555555665
Q ss_pred HhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 041384 377 MYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAET 455 (580)
Q Consensus 377 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~ 455 (580)
++...+.. ... .+...|++++|+..+++..+. .| +...+..+..++...|++++|+.
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH
Confidence 55555000 000 001115555555555555553 33 33445555555555555555555
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041384 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQL 528 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 528 (580)
.|+++++. . .+...+..+..+|...|++++|+..|++. ...| +...+..+...+...|++++|+..+++.
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55554442 2 34445555555555555555555555554 1222 4445555555555555655555555543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2e-12 Score=113.68 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=130.6
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhc-CCh
Q 041384 340 LSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFH-GYG 415 (580)
Q Consensus 340 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~ 415 (580)
...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+ .+...+..+...+... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 333333444444444444333322 12233444444444455555555555544432 2344566667777777 788
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 041384 416 EEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVS 494 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (580)
++|...++++.+.+..|+ ...+..+...+...|++++|...++++++. .+.+...+..++..+...|++++|...++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888887776333443 466777778888888888888888886652 23346677788888888888888888888
Q ss_pred hCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 495 TMP--MK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 495 ~~~--~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
++. .+ .+...+..+...+...|+.+.|..+++.+.+..|.++.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 772 23 4666777777788899999999999999999999988866544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.3e-13 Score=133.91 Aligned_cols=263 Identities=11% Similarity=-0.023 Sum_probs=204.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHHHHh----C-CCCchhHH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNS----VTLLAILSSCTRQSFLSHGLGVHCYIMKA----G-LNFDVSIG 371 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 371 (580)
+..+...+...|++++|...|++..+.+ +.+. ..+..+...+...|++++|...+++..+. + .+.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4445667889999999999999988764 2233 46777888889999999999999987763 1 12245677
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAAR---------DFVSWTTLISGYGFHGY-----------------GEEALQLFLEM 425 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 425 (580)
..+...|...|++++|...+++..+- ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 78888999999999999998876541 23477888889999999 99999998887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 426 QES----GVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 426 ~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
.+. +..| ...++..+...+...|++++|...++++++...-.++ ..++..+...|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 2122 2256778888899999999999999997663222222 337788999999999999999999877
Q ss_pred C-CC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 497 P-MK---P----STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE------NAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 497 ~-~~---p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
. .. . ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 11 1 2467788899999999999999999999886533 3457889999999999999999999988
Q ss_pred Hh
Q 041384 563 RA 564 (580)
Q Consensus 563 ~~ 564 (580)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=1.4e-10 Score=117.07 Aligned_cols=226 Identities=10% Similarity=-0.028 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhc
Q 041384 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGL-GVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNE 393 (580)
Q Consensus 315 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 393 (580)
+.+..+|++..... +-+...|...+.-+...|+.+.|. .+++..... ++.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556777776542 345666767777777788888886 999888764 345666777788888888999999999887
Q ss_pred CCC-------------CC------------cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-
Q 041384 394 MAA-------------RD------------FVSWTTLISGYGFHGYGEEALQLFLEMQES-GVEPDAITVLAILSACNH- 446 (580)
Q Consensus 394 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~- 446 (580)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 764 21 235777788888889999999999999875 2 1223334333222223
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-MKP----STRILSSLVSACRIHGRLEVA 521 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A 521 (580)
.++.+.|.++|+..++. .+.+...+..+++.....|+.+.|..+|++.. ..| ....|...+.--.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35589999999998875 34455667788888888999999999999873 223 335788888888899999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 522 EMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
..+.+++.+..|+++. ...+++-|
T Consensus 561 ~~v~~R~~~~~P~~~~-~~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK-LEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHSTTCCH-HHHHHHHT
T ss_pred HHHHHHHHHhCCCCcH-HHHHHHHh
Confidence 9999999999998765 33334333
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=2.9e-13 Score=127.35 Aligned_cols=265 Identities=13% Similarity=0.016 Sum_probs=203.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHh----CCCC-chhHH
Q 041384 301 WSSIIRGYSQSGDLSEAMKLFSRMRLERIEPN----SVTLLAILSSCTRQSFLSHGLGVHCYIMKA----GLNF-DVSIG 371 (580)
Q Consensus 301 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 371 (580)
+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...++...+. +..+ ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344567788999999999999988764 223 356778888889999999999999887652 2222 35677
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHH
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAA-----RD----FVSWTTLISGYGFHGY--------------------GEEALQLF 422 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 422 (580)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7888889999999999999887654 12 2377888888999999 99999998
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHH
Q 041384 423 LEMQES----GVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVV 493 (580)
Q Consensus 423 ~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 493 (580)
++..+. +..| ....+..+...+...|++++|...++++++.....++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 886542 2122 1246777888899999999999999987653222222 347788899999999999999999
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHH
Q 041384 494 STMP----MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE------NAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 494 ~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
++.. ..++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8762 1122 457788889999999999999999999876533 2457889999999999999999999
Q ss_pred HHHHhCC
Q 041384 560 RVMRAKG 566 (580)
Q Consensus 560 ~~~~~~~ 566 (580)
++..+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9987753
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=8.2e-13 Score=124.82 Aligned_cols=227 Identities=7% Similarity=0.031 Sum_probs=192.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC-HHHHHHHHhcCCC---CCcchHHHHHHHH
Q 041384 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS-ITSSHQIFNEMAA---RDFVSWTTLISGY 409 (580)
Q Consensus 334 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 409 (580)
..|..+...+...|++++|+..++.+.+.. +-+...|+.+..++...|+ +++|...|+++.. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999875 4567888999999999997 9999999998876 3667899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh-cCChH
Q 041384 410 GFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK-SGKIE 487 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 487 (580)
...|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++++. .+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999996 55 6788999999999999999999999998862 23357788999999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC--------
Q 041384 488 DA-----CKVVSTM-PMKP-STRILSSLVSACRIHG--RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG-------- 550 (580)
Q Consensus 488 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 550 (580)
+| +..+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777766 3445 6778999999998888 689999999998 888999999999999999975
Q ss_pred -ChHHHHHHHHHH-HhCC
Q 041384 551 -NWLGAEEVWRVM-RAKG 566 (580)
Q Consensus 551 -~~~~A~~~~~~~-~~~~ 566 (580)
.+++|+++++++ .+.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 358999999998 5544
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=5.6e-13 Score=121.46 Aligned_cols=219 Identities=11% Similarity=-0.068 Sum_probs=179.5
Q ss_pred hccCChHHHHHHHHHHHHhCC---CCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHH
Q 041384 344 TRQSFLSHGLGVHCYIMKAGL---NFDVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEE 417 (580)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 417 (580)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456889999999999998632 12567888899999999999999999998765 356789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-
Q 041384 418 ALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM- 496 (580)
Q Consensus 418 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 496 (580)
|+..++++.+.. +.+...+..+...+...|++++|...++++++ ..|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999862 33678899999999999999999999999776 2344444444555667789999999999776
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 497 P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE----NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 497 ~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
. .+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2 33444444 4777778888999999999999887764 478899999999999999999999999988654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=4.9e-13 Score=131.52 Aligned_cols=191 Identities=7% Similarity=-0.076 Sum_probs=152.3
Q ss_pred chhHHHHHHHHhHhcCCH-HHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSI-TSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILS 442 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 442 (580)
+...+..+...|...|++ ++|...|++..+ .+...|..+...|...|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 444555555555555666 666666555443 23456777778888888888888888888874 577788888888
Q ss_pred HHhcc---------CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc--------CChHHHHHHHHhCC-CCC----
Q 041384 443 ACNHA---------GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS--------GKIEDACKVVSTMP-MKP---- 500 (580)
Q Consensus 443 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~p---- 500 (580)
.+... |++++|+..++++++. .+.+...+..+..+|... |++++|+..|++.. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999997763 234467788888888888 89999999998883 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+...|..+...|...|++++|+..++++.+.+|.++.++..++.++...|++++|.+.+++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788999999999999999999999999999999999999999999999999999976543
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=4.9e-10 Score=113.12 Aligned_cols=216 Identities=10% Similarity=0.005 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH-HHHhcCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 351 HGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSH-QIFNEMAA--R-DFVSWTTLISGYGFHGYGEEALQLFLEMQ 426 (580)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (580)
.+..+|++....- +....+|...+..+...|+.++|. .+|++... | +...|...+....+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556677777653 457788888888888899998996 99988765 3 44567778888889999999999999998
Q ss_pred HcCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc-C
Q 041384 427 ESGV---------EPD------------AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS-G 484 (580)
Q Consensus 427 ~~g~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 484 (580)
.... .|+ ...|...+....+.|+.+.|.++|..+++.. ..+....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCC
Confidence 6410 142 2357777777778899999999999987641 112334444444443444 4
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHH
Q 041384 485 KIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE---NAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 485 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
+.+.|.++|+... .+.+...|...+......|+.+.|..+|+++....|+ ....|..++..-.+.|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5999999999882 3446677788888888899999999999999998873 5677888888888999999999999
Q ss_pred HHHHhCCCc
Q 041384 560 RVMRAKGLS 568 (580)
Q Consensus 560 ~~~~~~~~~ 568 (580)
+++.+.-+.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999886553
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1e-12 Score=127.27 Aligned_cols=153 Identities=13% Similarity=-0.042 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hh
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGV-EPD----AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IE 471 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 471 (580)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++++...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 566677777777888888877777664310 122 236777778888888999998888886652211111 45
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCch
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTMP----MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAE------PENAA 537 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~ 537 (580)
++..+...|...|++++|...+++.. ..++ ..++..+...|...|++++|...++++.+.. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 67788888889999999988887762 1122 4577788889999999999999999988763 33466
Q ss_pred HHHHHHHHHHhcCChH
Q 041384 538 NYTLLSMVCSESGNWL 553 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~ 553 (580)
++..++.++...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 7888899998888763
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=5.2e-12 Score=121.13 Aligned_cols=224 Identities=11% Similarity=-0.048 Sum_probs=144.7
Q ss_pred HHhhccCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHhHhcCCHHHHHHHHhcCCC-----CC-----cchHHHH
Q 041384 341 SSCTRQSFLSHGLGVHCYIMKA----GLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAA-----RD-----FVSWTTL 405 (580)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 405 (580)
..+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344556666666666655542 1111 234555556666666666666666555432 11 2356677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHh---hCC-CCChhHHHHH
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGV-EPDA----ITVLAILSACNHAGLVKEAETLFNNVMKE---KKI-ALAIEHYACY 476 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l 476 (580)
...|...|++++|+..+++..+..- .++. .++..+...|...|++++|...++++++- .+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777888888888888777664310 1111 46777778888888888888888886652 133 3335667788
Q ss_pred HHHhhhcCChHHHHHHHHhCC------CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 477 VDLLGKSGKIEDACKVVSTMP------MKP-STRILSSLVSACRIHGR---LEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~------~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
...|.+.|++++|...+++.. ..| ....+..+...+...|+ .++|+.++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 888888888888888887762 112 12234667777778888 67777777765 22344566788899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 041384 547 SESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (580)
...|++++|.+.+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999888653
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=4.2e-13 Score=124.72 Aligned_cols=237 Identities=13% Similarity=0.055 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHh------CC
Q 041384 298 VVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-------RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKA------GL 364 (580)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 364 (580)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++...+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346677777888888888888888887652 11223345666666777777777777777766543 11
Q ss_pred CC-chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHH
Q 041384 365 NF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES------GVEP-DAIT 436 (580)
Q Consensus 365 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~~p-~~~~ 436 (580)
.| ...++..+...|...| ++++|...+++..+. +-.| ....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g-------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRG-------------------------------KYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTT-------------------------------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcC-------------------------------cHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11 2333444444444444 444444444444432 1112 2244
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhh-----C-CCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----------CCC
Q 041384 437 VLAILSACNHAGLVKEAETLFNNVMKEK-----K-IALAIEHYACYVDLLGKSGKIEDACKVVSTMP----------MKP 500 (580)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 500 (580)
+..+...+...|++++|..+++++++.. + .+....++..+..+|...|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555566666666666666666654420 1 11123445566666666666666666665541 011
Q ss_pred CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 501 ST-------RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 501 ~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.. ..+..+...+...+.+.++...++......|..+.++..++.+|...|++++|.+++++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 112222233344556666777777777777888888999999999999999999999887653
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4.9e-11 Score=114.33 Aligned_cols=229 Identities=7% Similarity=0.002 Sum_probs=177.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHh--CCC----CchhHHH
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLER-IEPN----SVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GLN----FDVSIGN 372 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~ 372 (580)
....+...|++++|...+++..+.- -.++ ..++..+...+...|+++.|...+.+..+. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4456778899999999999886531 1122 356778888889999999999999988862 111 1245677
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCC-----CCc----chHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 041384 373 ALMNMYSKCGSITSSHQIFNEMAA-----RDF----VSWTTLISGYGFHGYGEEALQLFLEMQES----GVEP-DAITVL 438 (580)
Q Consensus 373 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~ 438 (580)
.+...|...|++++|...+++..+ ++. .++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999987764 111 37888999999999999999999998762 3324 347788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhC---CCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKK---IALAIEHYACYVDLLGKSGK---IEDACKVVSTMPMKPS-TRILSSLVSA 511 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 511 (580)
.+...+...|++++|...+++.++-.. .+.....+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999999776322 22223346778888999999 9999999999864443 3467789999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~ 532 (580)
|...|++++|...++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=1.2e-11 Score=104.87 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=135.5
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSA 443 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~ 443 (580)
++.+|..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|+..++...... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677777888888888888888887654 355678888888889999999999998888752 3355677777788
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSACRIHGRLEVA 521 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A 521 (580)
+...++++.|...+.++.+. .+.+...+..+..+|.+.|++++|++.|++. .. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999986652 3345677888999999999999999999887 33 44678899999999999999999
Q ss_pred HHHHHHHHhcCCCCch
Q 041384 522 EMLAHQLIEAEPENAA 537 (580)
Q Consensus 522 ~~~~~~~~~~~~~~~~ 537 (580)
+..++++++.+|.++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 9999999999987653
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=9.4e-12 Score=105.60 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG 481 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (580)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344445555555555555555554431 224455555666666666666666666665442 2233455566666666
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 041384 482 KSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVW 559 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (580)
..|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677777766666652 23466777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 041384 560 RVMRAKGL 567 (580)
Q Consensus 560 ~~~~~~~~ 567 (580)
+++.+...
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 98876543
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=1.2e-11 Score=119.87 Aligned_cols=276 Identities=12% Similarity=0.020 Sum_probs=163.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHH
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPT-R----VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALM 273 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (580)
+..+...+...|++++|...|++..+.+ |+ . ..+..+...+...|++++|...++++.+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3345566777888888888888877752 33 2 356666777777788888877776654321
Q ss_pred HHHHHcCCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhhcc
Q 041384 274 HMYCECTEALHPARIIFERTK--VKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE----RI-EPNSVTLLAILSSCTRQ 346 (580)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~ 346 (580)
.... ......+..+...|...|++++|...+++..+. +- .....++..+...+...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0000 012234666677788888888888888776543 11 11223455566666666
Q ss_pred CC-----------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC--CcchHHHHHH
Q 041384 347 SF-----------------LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR--DFVSWTTLIS 407 (580)
Q Consensus 347 ~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~ 407 (580)
|+ +++|...+++..+. ......+ ....+..+..
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHH
Confidence 66 55555555544321 0000000 1124455555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC----ChhHHHHHHH
Q 041384 408 GYGFHGYGEEALQLFLEMQESGV-EPD----AITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL----AIEHYACYVD 478 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~ 478 (580)
.+...|++++|+..+++..+... .++ ...+..+...+...|++++|...++++++...-.. ...++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666544210 011 12566667777777777777777776554221111 1455667777
Q ss_pred HhhhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041384 479 LLGKSGKIEDACKVVSTMP-M---KP----STRILSSLVSACRIHGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 533 (580)
.|...|++++|...+++.. . .+ ...++..+...|...|++++|...++++.+..+
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 7777888888777777662 0 01 134667778888888888888888888887664
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=1.2e-10 Score=107.80 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 041384 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCT-------RQSFL-------SHGLGVHCYIMKAGLNFDVSIGNALMNMYSK 380 (580)
Q Consensus 315 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (580)
++|...|++..... +-+...|..+...+. ..|++ ++|..+|+...+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888777653 345556666655554 34665 7788888777763223355677777778888
Q ss_pred cCCHHHHHHHHhcCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 041384 381 CGSITSSHQIFNEMAA--R-DFV-SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC-NHAGLVKEAET 455 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~~~~~~a~~ 455 (580)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887665 2 233 67777777778888888888888887752 22334444333322 23688888888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 456 LFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP----MKP--STRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
+|+++++.. +.+...|..++..+.+.|++++|..+|++.. .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888876633 2346667777777888888888888887772 244 34577777777777888888888888888
Q ss_pred hcCCCCch
Q 041384 530 EAEPENAA 537 (580)
Q Consensus 530 ~~~~~~~~ 537 (580)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88776543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=6e-11 Score=109.75 Aligned_cols=214 Identities=8% Similarity=0.015 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhH-------hcCCH-------HHHHHHHhcCCC---C-CcchHHHHHHHHHh
Q 041384 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYS-------KCGSI-------TSSHQIFNEMAA---R-DFVSWTTLISGYGF 411 (580)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 411 (580)
++|...|+...... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888753 556777877777765 35886 899999998765 2 44589999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhh-hcCChHH
Q 041384 412 HGYGEEALQLFLEMQESGVEPD-AI-TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLG-KSGKIED 488 (580)
Q Consensus 412 ~~~~~~a~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 488 (580)
.|++++|..+|++..+ +.|+ .. .|..++..+.+.|++++|..+|+++++. .+++...|...+.... ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 4664 33 7888999999999999999999997752 2334445544433322 3799999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 489 ACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA---EPE-NAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 489 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
|.++|++.. .+.+...|..++..+.+.|++++|..+|+++.+. .|. +..+|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999882 3346788999999999999999999999999996 343 6778999999999999999999999999
Q ss_pred HhCCCc
Q 041384 563 RAKGLS 568 (580)
Q Consensus 563 ~~~~~~ 568 (580)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876553
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.1e-11 Score=126.68 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=140.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 399 FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
...|+.|...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|+..|+++++- .+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 356778888888889999999999988885 56 4578888899999999999999999997762 123367888899
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 041384 478 DLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 555 (580)
.+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999887 3444 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 041384 556 EEVWRVMRA 564 (580)
Q Consensus 556 ~~~~~~~~~ 564 (580)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=6.5e-10 Score=106.10 Aligned_cols=261 Identities=12% Similarity=-0.041 Sum_probs=178.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCChHHHHHHHHHHHHhCC-CCc----hhHHHHH
Q 041384 304 IIRGYSQSGDLSEAMKLFSRMRLERIEPNSV----TLLAILSSCTRQSFLSHGLGVHCYIMKAGL-NFD----VSIGNAL 374 (580)
Q Consensus 304 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 374 (580)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345667888888888888877654222322 345556677788899999888888775211 111 2234566
Q ss_pred HHHhHhcCCHHHHHHHHhcCCC-----CC------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 041384 375 MNMYSKCGSITSSHQIFNEMAA-----RD------FVSWTTLISGYGFHGYGEEALQLFLEMQESGVE--P--DAITVLA 439 (580)
Q Consensus 375 ~~~~~~~g~~~~A~~~~~~~~~-----~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~--p--~~~~~~~ 439 (580)
...+...|++++|...+++... .+ ...+..+...+...|++++|...+++..+.... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7778888999988888887653 11 124566777888899999999999888764221 1 1356677
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHH-----HHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYA-----CYVDLLGKSGKIEDACKVVSTMP-MKPS-----TRILSSL 508 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 508 (580)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77888889999999999988665322211111121 23344778899999999998873 2221 2245677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPE------NAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
...+...|++++|...++++.+..+. ...++..++.++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888899999999999988765422 123677788889999999999998887754
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2.7e-11 Score=113.73 Aligned_cols=278 Identities=12% Similarity=0.005 Sum_probs=166.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHH
Q 041384 200 TAMISGCIDSQNYDTGIDLFRAMQREGVKPT-----RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMH 274 (580)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (580)
......+...|++++|...|++..+.+ |+ ...+..+...+...|++++|...++...+....
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------- 75 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----------- 75 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----------
Confidence 344566777888888888888887753 33 355667777778888888888877765432100
Q ss_pred HHHHcCCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCC-
Q 041384 275 MYCECTEALHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERI-EPN----SVTLLAILSSCTRQSF- 348 (580)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~- 348 (580)
.++ . ......+..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 76 ----~~~-~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 76 ----IGD-Q-----------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp ----HTC-H-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----ccc-c-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence 000 0 00123456667778888888888888877653210 112 2255556666666666
Q ss_pred -------------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CCcchHHHHHH
Q 041384 349 -------------------LSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAA--RDFVSWTTLIS 407 (580)
Q Consensus 349 -------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 407 (580)
+++|...++...+. ...... .....+..+..
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~ 191 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGN 191 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHH
Confidence 55555555544321 000000 01124445555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHH
Q 041384 408 GYGFHGYGEEALQLFLEMQESGV-EPD----AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVD 478 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~ 478 (580)
.+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++.++...-..+ ..++..+..
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 271 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 56666666666666666543200 011 235666677777788888888887776542211111 456677777
Q ss_pred HhhhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 479 LLGKSGKIEDACKVVSTMP-M---KP----STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
.|...|++++|...+++.. . .+ ...++..+...+...|++++|...++++.+..+.
T Consensus 272 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8888888888888877662 0 11 1346778888889999999999999998887653
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=4.8e-11 Score=105.12 Aligned_cols=193 Identities=13% Similarity=-0.008 Sum_probs=92.5
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAA----RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPD-AITVLAIL 441 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~ 441 (580)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 334445555555555555555555554432 23334444555555555555555555555543 332 24444555
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCCh-----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAI-----EHYACYVDLLGKSGKIEDACKVVSTM-PMKPS---TRILSSLVSAC 512 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 512 (580)
..+...|++++|...++++++...-.+.. ..|..+...+...|++++|++.|++. ...|+ ...+..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 55555555555555555544321111111 23444444455555555555555544 22333 23344444444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
...| ...++++....+.+...+.... ....|.+++|...+++..+..+.
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 3222 2333444444444333332222 22334459999999998876543
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.8e-12 Score=117.50 Aligned_cols=238 Identities=14% Similarity=0.089 Sum_probs=153.6
Q ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------
Q 041384 265 DHHLSAALMHMYCECTEALHPARIIFERTKV--------K---DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE------ 327 (580)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------ 327 (580)
...++..+...+...|+ .+.|...++.... . ....+..+...|...|++++|...+++....
T Consensus 26 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677888889999999 9999998887653 1 3456788889999999999999999998754
Q ss_pred CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHh------CCCC-chhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCc
Q 041384 328 RIEP-NSVTLLAILSSCTRQSFLSHGLGVHCYIMKA------GLNF-DVSIGNALMNMYSKCGSITSSHQIFNEMAARDF 399 (580)
Q Consensus 328 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 399 (580)
+-.| ...++..+...+...|++++|...++...+. +..| ...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------------------------ 154 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK------------------------------ 154 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------------------------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH------------------------------
Confidence 2223 3457888889999999999999999988763 1111 122
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh------CC
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQES------GVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEK------KI 466 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~ 466 (580)
.+..+...+...|++++|++.++++.+. +..|+ ..++..+...+...|++++|...++++++.. ..
T Consensus 155 -~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 155 -QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp -HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444555555566666666666655543 11232 3466677778888888888888888866421 11
Q ss_pred CCC-hhH------HHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 467 ALA-IEH------YACYVDLLGKSGKIEDACKVVSTMP-MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 467 ~~~-~~~------~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
.+. ... +..+...+...+.+.++...+.... ..| ...++..+...|.+.|++++|...++++.+..|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 111 2222233334455555555665553 233 4567889999999999999999999999887664
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=3.7e-11 Score=118.14 Aligned_cols=179 Identities=13% Similarity=-0.034 Sum_probs=156.3
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 041384 384 ITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYG-EEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFN 458 (580)
Q Consensus 384 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 458 (580)
++++...+++... .+...+..+...+...|++ ++|++.|++..+. .| +...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665443 3567888899999999999 9999999999986 45 57889999999999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhhc---------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--------CCHH
Q 041384 459 NVMKEKKIALAIEHYACYVDLLGKS---------GKIEDACKVVSTM-PM-KPSTRILSSLVSACRIH--------GRLE 519 (580)
Q Consensus 459 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~--------~~~~ 519 (580)
++++ ..|+...+..+...|... |++++|++.+++. .. +.+...|..+..+|... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9765 457778899999999999 9999999999988 33 44678999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 520 VAEMLAHQLIEAEP---ENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 520 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+|+..++++.+.+| .++..|..++.+|...|++++|.+.+++..+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999887653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=1.4e-10 Score=102.04 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=161.6
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---CcchHHHHH
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLI 406 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 406 (580)
..|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+. +...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34667888888999999999999999999999875577777777999999999999999999988763 445788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC---hhHHHH
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEP-DA-------ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA---IEHYAC 475 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 475 (580)
..+...|++++|+..+++..+. .| +. ..|..+...+...|++++|+..|+++++ ..|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999985 45 44 4577778888999999999999999765 3444 567778
Q ss_pred HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 476 YVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+..+|...|+. .++++. ...+...+.... ....+.+++|+..++++.+.+|.++.+...+..+.
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888766543 223321 122344443333 34457789999999999999999999888877654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.3e-10 Score=111.16 Aligned_cols=221 Identities=14% Similarity=-0.004 Sum_probs=138.2
Q ss_pred hhccCChHHHHHHHHHHHHhCC-CC----chhHHHHHHHHhHhcCCHHHHHHHHhcCCC-----CC-----cchHHHHHH
Q 041384 343 CTRQSFLSHGLGVHCYIMKAGL-NF----DVSIGNALMNMYSKCGSITSSHQIFNEMAA-----RD-----FVSWTTLIS 407 (580)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~~ 407 (580)
+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3455566666666655554210 01 233455555666666666666665554432 11 235666777
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHh---hCCCCChhHHHHHHHH
Q 041384 408 GYGFHGYGEEALQLFLEMQES----GVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAIEHYACYVDL 479 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~ 479 (580)
.|...|++++|++.+++..+. +-.+ ...++..+...+...|++++|...++++++- .+.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777778888888777776542 1111 1245667777888888888888888886641 1333336667778888
Q ss_pred hhhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 480 LGKSGKIEDACKVVSTMP----M--KPS-TRILSSLVSACRIHGR---LEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
|.+.|++++|...+++.. . .|. ...+..+...+...++ ..+|+..+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 888888888888887761 1 122 2344555555666777 66777766652 12244555677888999999
Q ss_pred CChHHHHHHHHHHHh
Q 041384 550 GNWLGAEEVWRVMRA 564 (580)
Q Consensus 550 g~~~~A~~~~~~~~~ 564 (580)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.7e-10 Score=96.46 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=142.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSAC 444 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 444 (580)
...+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566778888999999999999988763 55678888999999999999999999998862 34678888889999
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 041384 445 NHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
...|++++|...++++++. .+.+...+..+...+...|++++|...++++. .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999997763 34467788889999999999999999999872 3446788999999999999999999
Q ss_pred HHHHHHHhcCCCCchH
Q 041384 523 MLAHQLIEAEPENAAN 538 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~~ 538 (580)
..++++.+..|.++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988877653
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.8e-10 Score=105.16 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=154.8
Q ss_pred hccCChHHHHHHHHHHHHh-------CCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-----------CcchHHHH
Q 041384 344 TRQSFLSHGLGVHCYIMKA-------GLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-----------DFVSWTTL 405 (580)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 405 (580)
...|++++|...+++..+. ..+....++..+...|...|++++|...++++.+. ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4678888888888877762 22335677888889999999999999998876531 23478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh-----C-CCCChhH
Q 041384 406 ISGYGFHGYGEEALQLFLEMQES------GVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEK-----K-IALAIEH 472 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~------g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 472 (580)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++++.. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1123 34677888888999999999999999877631 1 2223567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP----------MKP-STRILSSLVSACRIHG------RLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~ 535 (580)
+..+..+|...|++++|...+++.. ..+ ....+..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999988762 122 2233333333333322 2334444444443444667
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 536 AANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+.++..++.+|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999988753
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=5.8e-09 Score=99.56 Aligned_cols=227 Identities=8% Similarity=0.037 Sum_probs=172.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCChHHHHHHHHHHHHh--CC---CC-chhHHHH
Q 041384 305 IRGYSQSGDLSEAMKLFSRMRLER-IEPN----SVTLLAILSSCTRQSFLSHGLGVHCYIMKA--GL---NF-DVSIGNA 373 (580)
Q Consensus 305 ~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~~-~~~~~~~ 373 (580)
...+...|++++|...|++..+.. -.++ ..++..+...+...|+++.|...+.+..+. .. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 345678899999999998886542 1133 346777888888999999999999887762 11 11 2456778
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCC-----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 041384 374 LMNMYSKCGSITSSHQIFNEMAA-----RD----FVSWTTLISGYGFHGYGEEALQLFLEMQES----GVEPDAITVLAI 440 (580)
Q Consensus 374 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~~~~~l 440 (580)
+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 88889999999999998887654 12 246778889999999999999999998761 222235778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 041384 441 LSACNHAGLVKEAETLFNNVMKEKKIALA---IEHYACYVDLLGKSGK---IEDACKVVSTMPMKPS-TRILSSLVSACR 513 (580)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~ 513 (580)
...+.+.|++++|...+++.++...-..+ ...+..+...+...|+ +.+|+..+++....|+ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999998764332222 3456677777888888 9999999998754443 346678889999
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 041384 514 IHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~ 531 (580)
..|++++|...++++.+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=6.1e-09 Score=93.12 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-----ChhHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-----AIEHYA 474 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 474 (580)
.+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHH
Confidence 33445555555566666666666554433212 234455555556666666666666665322 223 123333
Q ss_pred HHHHH--hhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCchHH
Q 041384 475 CYVDL--LGKSG--KIEDACKVVSTMP-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEA----------EPENAANY 539 (580)
Q Consensus 475 ~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~ 539 (580)
.|+.+ ....| +..+|..+|+++. ..|+..+-..+..++.+.|++++|++.++.+.+. +|.++.++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 33333 22222 5666666666652 2233222223333555566666666666655443 35556655
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 540 TLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
..++.+....|+ +|.++++++.+..
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 555444445554 5556665555543
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=3.2e-09 Score=92.95 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENA---ANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKS 570 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (580)
.+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...+....
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 456678899999999999999999999876 5699999999999999999999999988776543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=1.5e-09 Score=97.65 Aligned_cols=183 Identities=9% Similarity=-0.058 Sum_probs=99.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCCC---C---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAAR---D---FVSWTTLISGYGFHGYGEEALQLFLEMQESGV-EPD-AITVLA 439 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~-~~~~~~ 439 (580)
...+..+...+.+.|++++|...|+++.+. + ...+..+..+|...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 444444555555566666666666655441 1 23444555555556666666666666555311 111 233444
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041384 440 ILSACNH--------AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSA 511 (580)
Q Consensus 440 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 511 (580)
+..++.. .|++++|...|+++++...- +......+.......++. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4444544 55556666655554442211 111111110000000000 0113556777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPEN---AANYTLLSMVCSES----------GNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 567 (580)
|.+.|++++|+..++++.+..|.+ +..+..++.+|... |++++|...++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 888888888888888888888774 44677888888766 788888888888877543
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.6e-09 Score=86.10 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=85.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 041384 438 LAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIH 515 (580)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 515 (580)
..+...+...|++++|..+++++++. .+.+...+..++..+...|++++|...++++. .+.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34444455555555555555554431 12234444555555555566666665555541 233556677778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 889999999998888888888888889999999999999999988887654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=3.3e-09 Score=96.57 Aligned_cols=208 Identities=15% Similarity=0.094 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHHhC----CC
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE------RIEP-NSVTLLAILSSCTRQSFLSHGLGVHCYIMKAG----LN 365 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~ 365 (580)
...++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...+....+.. .+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3456777778888888888888888887644 2122 23456667777777777777777777665421 00
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHH
Q 041384 366 FDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES------GVEP-DAITVL 438 (580)
Q Consensus 366 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g~~p-~~~~~~ 438 (580)
.++ .....+..+...+...|++++|...+++..+. +-.| ...++.
T Consensus 122 ~~~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 122 FHP----------------------------DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp TCH----------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred CCh----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 000 01124455556666666666666666666553 1133 235677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhh------CCCC-ChhHHHHHHHHhhhcC------ChHHHHHHHHhCC-CCC-CHH
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEK------KIAL-AIEHYACYVDLLGKSG------KIEDACKVVSTMP-MKP-STR 503 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~ 503 (580)
.+...+...|++++|...++++++.. ...+ ....+..+...+...+ .+.++...++... ..| ...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 88888889999999999998876531 1122 2333444443333322 3444555555553 223 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
++..+...|...|++++|...++++.+..
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 78889999999999999999999988653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=9.4e-10 Score=100.71 Aligned_cols=201 Identities=8% Similarity=-0.033 Sum_probs=133.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHH
Q 041384 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-----D----FVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a 418 (580)
++++|...+... ...|...|++++|...|++...- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 33566677777777777655431 1 34677788888888888888
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHH
Q 041384 419 LQLFLEMQESGV---EPD--AITVLAILSACNHA-GLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 419 ~~~~~~~~~~g~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 488 (580)
+..+++..+... .+. ..++..+...|... |++++|+..|+++++-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887765310 111 34677788888885 9999999999987753211111 3467788889999999999
Q ss_pred HHHHHHhCC-CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH-----HHHHHHHHH--hcCCh
Q 041384 489 ACKVVSTMP-MKPST--------RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN-----YTLLSMVCS--ESGNW 552 (580)
Q Consensus 489 A~~~~~~~~-~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~ 552 (580)
|+..|++.. ..|+. ..+..+...+...|++++|+..++++.+..|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998872 22221 146777788888999999999999999988875442 344555554 35678
Q ss_pred HHHHHHHHHHH
Q 041384 553 LGAEEVWRVMR 563 (580)
Q Consensus 553 ~~A~~~~~~~~ 563 (580)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888776543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=2.2e-09 Score=98.20 Aligned_cols=201 Identities=8% Similarity=-0.065 Sum_probs=133.7
Q ss_pred HhhccCChHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-----C----cchHHHHHH
Q 041384 342 SCTRQSFLSHGLGVHCYIMKA----GLNFD-VSIGNALMNMYSKCGSITSSHQIFNEMAAR-----D----FVSWTTLIS 407 (580)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~ 407 (580)
.+...|++++|...+....+. |-+++ ..+|+.+..+|.+.|++++|...+++..+- + ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666655542 21111 345666666777777777777666655431 1 236777888
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC---C----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh-----hHHH
Q 041384 408 GYGFH-GYGEEALQLFLEMQESGVEP---D----AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI-----EHYA 474 (580)
Q Consensus 408 ~~~~~-~~~~~a~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 474 (580)
.|... |++++|+..|++..+. .| + ..++..+...+...|++++|+..|+++++...-.+.. ..+.
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 88886 9999999999988764 22 1 3567788889999999999999999977633222222 1567
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 475 CYVDLLGKSGKIEDACKVVSTM-PMKPSTR------ILSSLVSACR--IHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.+..++...|++++|...|++. ...|+.. .+..++.++. ..+++++|+..++++...+|.+...+..+-.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 7888899999999999999988 3445322 3445556664 4567889999988888887766554444433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=2.7e-09 Score=95.97 Aligned_cols=205 Identities=12% Similarity=0.046 Sum_probs=145.6
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhcCCC--C-C---cch
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVSIGNALMNMYSKCGSITSSHQIFNEMAA--R-D---FVS 401 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 401 (580)
+.+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ | + ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456777788888999999999999999999864221 166788889999999999999999998876 3 2 235
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhH
Q 041384 402 WTTLISGYGF--------HGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH 472 (580)
Q Consensus 402 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 472 (580)
+..+..++.. .|++++|+..|+++.+. .|+. .....+... .... .. . ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~-------~~~~---~~-~--------~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKI-------RELR---AK-L--------ARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHH-------HHHH---HH-H--------HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHH-------HHHH---HH-H--------HHH
Confidence 6777888888 99999999999999985 4543 222111110 0000 00 0 112
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM-PMKPS----TRILSSLVSACRIH----------GRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|+..++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888888888888888877 22333 34667777777765 8999999999999999999865
Q ss_pred H---HHHHHHHHHhcCChHHH
Q 041384 538 N---YTLLSMVCSESGNWLGA 555 (580)
Q Consensus 538 ~---~~~l~~~~~~~g~~~~A 555 (580)
. ...+..++...|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 3 44555555555555443
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=6.8e-08 Score=91.98 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=40.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHh---hCCCCCh-hHHHHHHHHhh
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPD---AITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALAI-EHYACYVDLLG 481 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~ 481 (580)
+...|++++|...+++.......++ ...+..+...+...|++++|...+++++.. .+..++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 3444555555555544443211110 123344445555556666666555554331 1111122 24445555566
Q ss_pred hcCChHHHHHHHHhC
Q 041384 482 KSGKIEDACKVVSTM 496 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~ 496 (580)
..|+.++|...+++.
T Consensus 305 ~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 666666666665554
No 93
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=1.3e-09 Score=111.44 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=130.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 041384 367 DVSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILS 442 (580)
Q Consensus 367 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~ 442 (580)
+...++.+..+|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456677778888888888888888887664 34567888888888899999999999988885 56 4578888888
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 041384 443 ACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 520 (580)
++...|++++|++.|+++++- .+-+...+..+..+|...|++++|++.|++. ...| +...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 899999999999999987762 1234677888999999999999999999887 3455 56788889999999999999
Q ss_pred HHHHHHHHHhcC
Q 041384 521 AEMLAHQLIEAE 532 (580)
Q Consensus 521 A~~~~~~~~~~~ 532 (580)
|.+.++++.+..
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999888887654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=1.6e-09 Score=111.37 Aligned_cols=168 Identities=10% Similarity=-0.054 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHhcCC--------C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 041384 379 SKCGSITSSHQIFNEMA--------A---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNH 446 (580)
Q Consensus 379 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 446 (580)
...|++++|.+.+++.. + .+...+..+...+...|++++|+..+++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666665554 1 23445566666666666666666666666654 33 44556666666666
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEML 524 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~ 524 (580)
.|++++|...|+++++.. +.+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655421 2234556666666666666666 6666655 2223 455666666666666666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCC
Q 041384 525 AHQLIEAEPENAANYTLLSMVCSESGN 551 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
++++.+.+|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=3.3e-10 Score=91.89 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=90.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (580)
+...|++++|+..++..... .|+ ...+..+...|...|++++|+..|+++++. .+-+..+|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 33445666666666665442 332 234445666666777777777777765542 1223556666777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 041384 488 DACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEM-LAHQLIEAEPENAANYTLLSMVCSESGN 551 (580)
Q Consensus 488 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+|+..|++. ...| +...+..+...|.+.|++++|.+ .++++.+.+|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777665 2344 56677778888888888766554 4588888888888888888887777764
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.2e-08 Score=80.87 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++++. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888889999999998888753 335677778888888899999999999986652 234566778888899
Q ss_pred hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 481 GKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
...|++++|.+.++++. .+.+...+..++..+...|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999998872 34467788889999999999999999999999888753
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=8e-09 Score=94.11 Aligned_cols=176 Identities=9% Similarity=-0.026 Sum_probs=139.4
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 384 ITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 384 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
.+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555544445556677788888999999999999999885 55 567888889999999999999999998654
Q ss_pred hhCCCCChhHHH-HHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--ch
Q 041384 463 EKKIALAIEHYA-CYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN--AA 537 (580)
Q Consensus 463 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 537 (580)
..|+..... .....+...++.++|+..+++. . .+.+...+..+...+...|++++|+..++++.+.+|.+ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 234433322 2233466778888888888877 2 34477889999999999999999999999999999987 88
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+..++.++...|+.++|...+++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999887653
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=3.7e-08 Score=85.11 Aligned_cols=162 Identities=11% Similarity=-0.045 Sum_probs=128.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCChhH
Q 041384 397 RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAG----LVKEAETLFNNVMKEKKIALAIEH 472 (580)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 472 (580)
.++..+..+...|...+++++|+..|++..+.| ++..+..+...|.. + ++++|..+|++..+ .+ +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHH
Confidence 355666777777777888888888888888764 56667777777777 6 89999999998654 32 4556
Q ss_pred HHHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 473 YACYVDLLGK----SGKIEDACKVVSTMP-MKPS---TRILSSLVSACRI----HGRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 473 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
+..|...|.. .+++++|+++|++.. ..|+ +..+..|...|.. .++.++|+..++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 789999999998884 3343 7788888888888 78999999999999988 66777899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 041384 541 LLSMVCSES-G-----NWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 541 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 567 (580)
.|+..|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999988764 3 89999999999888774
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=9.1e-09 Score=104.06 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=118.9
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 041384 381 CGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETL 456 (580)
Q Consensus 381 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 456 (580)
.|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+. .| +...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899999988775 24567888889999999999999999999885 45 567888888899999999999999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 041384 457 FNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIH---GRLEVAEMLAHQLIEA 531 (580)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 531 (580)
++++++. .+.+...+..+..+|.+.|++++|.+.+++. ... .+...+..+...+... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9997763 2334677888999999999999999999887 233 4667888888899888 9999999999999999
Q ss_pred CCCCchHHHHHH
Q 041384 532 EPENAANYTLLS 543 (580)
Q Consensus 532 ~~~~~~~~~~l~ 543 (580)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=1.1e-09 Score=88.89 Aligned_cols=125 Identities=9% Similarity=-0.062 Sum_probs=103.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHG 516 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 516 (580)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+...+.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45566778999999999998543 3333 445667899999999999999999988 3444 7789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH-HHHHHhCCC
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV-WRVMRAKGL 567 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 567 (580)
++++|+..++++.+.+|.++.++..++.+|.+.|++++|.+. +++..+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588777554
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=1.6e-08 Score=90.32 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 352 GLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR-----DFVSWTTLISGYGFHGYGEEALQLFLEMQ 426 (580)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (580)
+...+++..+.+ .++...+..+..++...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666655544 444455557777888888888888888876443 33466777888899999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 427 ESGVEP-----DAITVLAILSA--CNHAG--LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 427 ~~g~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
+. .| +..+...+..+ ....| ++..|..+|+++.. ..|+..+...+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 35555556555 33334 89999999999543 23442233344448889999999999987652
Q ss_pred -C-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 498 -M-----------KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 498 -~-----------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
. +.++.++..++......|+ +|.++++++.+..|+++.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 2355666566666666787 8899999999999999986543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=9.8e-09 Score=85.90 Aligned_cols=158 Identities=14% Similarity=0.051 Sum_probs=106.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH-
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL- 479 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 479 (580)
+..+...+...|++++|+..+++..+. .| +...+..+...+...|++++|...++++++.. |+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHH
Confidence 334455566666666676666666553 34 44556666666677777777777777654322 222222222111
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHH
Q 041384 480 LGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN--AANYTLLSMVCSESGNWLGA 555 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 555 (580)
+...+...+|+..+++. ...| +...+..+...+...|++++|+..++++.+.+|.. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11222223456666665 2344 67888999999999999999999999999999874 66899999999999999999
Q ss_pred HHHHHHHHh
Q 041384 556 EEVWRVMRA 564 (580)
Q Consensus 556 ~~~~~~~~~ 564 (580)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=4.1e-09 Score=84.89 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=80.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...+..+...+.+.|++++|+..|++. ... .++..|..+..+|...|++++|+..|+++.+.+|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 445666777777788888888888777 233 467788888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 041384 548 ESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~ 567 (580)
..|++++|+..|++..+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999998877653
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=1e-08 Score=80.02 Aligned_cols=108 Identities=11% Similarity=-0.024 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSAC 512 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 512 (580)
..+......+.+.|++++|+..|+++++. .+.+...|..+..+|.+.|++++|+..+++. .. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44555555566666666666666665441 1223444555555555555555555555554 12 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
...|++++|+..++++++.+|.++.++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555555555555555555555555554443
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=3.9e-08 Score=85.23 Aligned_cols=129 Identities=16% Similarity=-0.002 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
.+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|...++++++. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34556667777788888888777663 557777777777788888888888888876652 233456677777777
Q ss_pred hhcCChHHHHHHHHhCC-CCC-CH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 481 GKSGKIEDACKVVSTMP-MKP-ST----------------RILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
...|++++|+..|++.. ..| +. ..+..+...+...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77888888877777662 122 22 566777777777778888888888777777765
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=1.1e-06 Score=86.27 Aligned_cols=203 Identities=9% Similarity=-0.039 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH-HHHHhc
Q 041384 315 SEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSS-HQIFNE 393 (580)
Q Consensus 315 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 393 (580)
+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..... +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566777766543 344556666666667778888888888888877 334333322 2211111111 111211
Q ss_pred CC------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Q 041384 394 MA------------ARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNH-AGLVKEAETLFNNV 460 (580)
Q Consensus 394 ~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 460 (580)
.. ......|...+..+.+.++.+.|..+|++. .. ..++...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001235666667776778899999999988 32 12233444322222112 33689999999998
Q ss_pred HHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 461 MKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
++..+- +...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 347 l~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 774432 34456667777788899999999999983 3567788888877888999999888888774
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=2e-08 Score=78.41 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=90.7
Q ss_pred CCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 466 IALA-IEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 466 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++.+.|++++|+..++++++.+|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4444 456777889999999999999999987 33 44788999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 543 SMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+.+|...|++++|++.|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999988654
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=4.1e-08 Score=90.46 Aligned_cols=219 Identities=11% Similarity=-0.005 Sum_probs=143.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 041384 311 SGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTR-QSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQ 389 (580)
Q Consensus 311 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 389 (580)
.|++++|..++++..+..- .. +.. .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3566777777776654311 10 111 45666666665543 345666677777777
Q ss_pred HHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCCHHHHHH
Q 041384 390 IFNEMAAR-----D----FVSWTTLISGYGFHGYGEEALQLFLEMQESGV---EPD--AITVLAILSACNHAGLVKEAET 455 (580)
Q Consensus 390 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~p~--~~~~~~l~~~~~~~~~~~~a~~ 455 (580)
.|.+..+- + ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66655431 1 23677778888888899999888888765311 121 2567777788888 99999999
Q ss_pred HHHHHHHhhCCC---C-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 041384 456 LFNNVMKEKKIA---L-AIEHYACYVDLLGKSGKIEDACKVVSTMP-M---KPS----TRILSSLVSACRIHGRLEVAEM 523 (580)
Q Consensus 456 ~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~ 523 (580)
.|+++++-..-. + ...++..+...|.+.|++++|+..|++.. . .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876532111 1 14567888899999999999999998772 1 111 2256666677778899999999
Q ss_pred HHHHHHhcCCCCch-----HHHHHHHHHHhcCChHHHHHH
Q 041384 524 LAHQLIEAEPENAA-----NYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 524 ~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~ 558 (580)
.++++. ..|.... ....++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 8876433 244455555 56777666653
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.4e-08 Score=93.59 Aligned_cols=197 Identities=9% Similarity=-0.044 Sum_probs=149.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 041384 345 RQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLE 424 (580)
Q Consensus 345 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (580)
..|++++|.+++++..+.... . .+...++++.|...|.+ ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899988887764221 1 12225788999888765 46678889999999999988
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 041384 425 MQES----GVEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEK---KIAL-AIEHYACYVDLLGKSGKIEDACKVVST 495 (580)
Q Consensus 425 ~~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (580)
..+. |-.+. ..+|..+...|...|++++|+..+++.++-. +... ...++..+...|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 11111 3578888889999999999999999876532 1111 24577888999988 999999999988
Q ss_pred CC-CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 496 MP-MKP-------STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA------ANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 496 ~~-~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.. ..| ...++..+...+.+.|++++|+..++++.+..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 72 111 145788899999999999999999999998765432 3577788888889999999999999
Q ss_pred HH
Q 041384 562 MR 563 (580)
Q Consensus 562 ~~ 563 (580)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=1.1e-07 Score=86.99 Aligned_cols=162 Identities=6% Similarity=-0.029 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hh
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDA------ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IE 471 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 471 (580)
+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...++++++......+ ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566777888888888888877764211 22 12334555667788999999998887642211112 44
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTMP----MKPS-----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE------NA 536 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 536 (580)
+++.+...|...|++++|+..+++.. ..|+ ..++..+...|...|++++|+..++++.+..+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888888999999999988887762 1222 257888899999999999999999998876422 26
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 041384 537 ANYTLLSMVCSESGNWLGA-EEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 564 (580)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777877643
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=9.3e-09 Score=105.80 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=133.3
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 410 GFHGYGEEALQLFLEMQ--------ESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~--------~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...++++++.. +.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 77899999999999998 4 345 55788888999999999999999999987632 33567888999999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 041384 481 GKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEV 558 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (580)
...|++++|++.|++. ...| +...+..+..++.+.|++++ +..++++.+.+|.++.++..++.++.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998 3444 67889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 041384 559 WRVMRAKG 566 (580)
Q Consensus 559 ~~~~~~~~ 566 (580)
+++..+.+
T Consensus 557 ~~~al~l~ 564 (681)
T 2pzi_A 557 LDEVPPTS 564 (681)
T ss_dssp HHTSCTTS
T ss_pred HHhhcccC
Confidence 99866544
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=3.7e-07 Score=83.44 Aligned_cols=160 Identities=6% Similarity=0.000 Sum_probs=118.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHH
Q 041384 405 LISGYGFHGYGEEALQLFLEMQESG-VEPDAI----TVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYAC 475 (580)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 475 (580)
.+..+...|++++|...+++..+.. ..|+.. .+..+...+...|++++|...++++++...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888887642 112211 2334566677788999999999987762222223 336888
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHH
Q 041384 476 YVDLLGKSGKIEDACKVVSTMP-----M---KP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE------NAANYT 540 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~ 540 (580)
+...|...|++++|+..++++. . .+ ...++..+...|.+.|++++|+..++++.+..+. -+.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988888762 1 11 1247788999999999999999999999876533 267899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 041384 541 LLSMVCSESGN-WLGAEEVWRVMRA 564 (580)
Q Consensus 541 ~l~~~~~~~g~-~~~A~~~~~~~~~ 564 (580)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988754
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=5.4e-08 Score=83.83 Aligned_cols=160 Identities=12% Similarity=0.038 Sum_probs=108.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCCC---CcchHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAAR---DFVSWTT----------------LISGYGFHGYGEEALQLFLEMQESGVE 431 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~g~~ 431 (580)
+......+...|++++|...|++..+. +...|.. +..+|...|++++|+..|++..+. .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 334455667888888888888887653 3345555 777888888888888888888875 4
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC--hHHHHHHHHhCCCCCCH--HHHH
Q 041384 432 P-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK--IEDACKVVSTMPMKPST--RILS 506 (580)
Q Consensus 432 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~ 506 (580)
| +...+..+...+...|++++|...|+++++. .+.+...+..+...|...|+ .+.+...++... .|++ ..+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 5 5577777888888888888888888887652 22345667777777765553 344555666553 3333 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
....++...|++++|+..|+++++..|.+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 45556667788888888888888888763
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=4.7e-08 Score=98.84 Aligned_cols=151 Identities=15% Similarity=0.005 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHH
Q 041384 413 GYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACK 491 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (580)
|++++|+..+++..+. .| +...+..+...+...|++++|...++++++ -.+.+...+..+..+|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5667777777777664 34 456677777777777777777777777654 122335667777777777777777777
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc---CChHHHHHHHHHHHhCC
Q 041384 492 VVSTM-PM-KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES---GNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 492 ~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 566 (580)
.+++. .. +.+...+..+...+.+.|++++|.+.++++.+.+|.++..+..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 77776 22 335567777777777777777777777777777777777777777777777 77777777777776654
Q ss_pred C
Q 041384 567 L 567 (580)
Q Consensus 567 ~ 567 (580)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.2e-08 Score=82.22 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
.+..+...+.+.|++++|+..|++. . .+.+...|..+..++...|++++|+..++++.+.+|.++..+..++.+|...
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3444445555555555555555544 1 2224455555555555556666666666666666666666566666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 041384 550 GNWLGAEEVWRVMRAK 565 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~ 565 (580)
|++++|.+.|++..+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666665555443
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=8.1e-08 Score=82.71 Aligned_cols=159 Identities=9% Similarity=-0.003 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHhccCCHHHHHHHHHHHHHhhCC
Q 041384 404 TLISGYGFHGYGEEALQLFLEMQESGVEPD-AITVLA----------------ILSACNHAGLVKEAETLFNNVMKEKKI 466 (580)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~ 466 (580)
.....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|+++++. .
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3445566778888888888888774 453 345555 777788888888888888887652 2
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGR--LEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
+.+...+..+..+|...|++++|+..|++. ...| +...+..+...|...|+ .+.+...++++....| ....+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence 334667778888888888888888888877 2334 56677777777765543 3445555555543222 22245566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 543 SMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+.++...|++++|+..|++.++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC
Confidence 7777778888888888888776554
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=9.7e-08 Score=78.82 Aligned_cols=128 Identities=8% Similarity=-0.082 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSAC 512 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 512 (580)
..+..+...+...|++++|...++++++. .+.+...+..+..++...|++++|...+++.. .+.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666677778888888888876652 23346667777778888888888888887762 334677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 564 (580)
...|++++|...++++.+..|.+...+..+..+ +...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555554 8888999999999887644
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=2.9e-07 Score=83.75 Aligned_cols=163 Identities=11% Similarity=0.055 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCC--CcchH-HHHH
Q 041384 330 EPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAAR--DFVSW-TTLI 406 (580)
Q Consensus 330 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~l~ 406 (580)
+.+...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...++++... +.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556667777778888888888888887765 345667778888888888889988888888763 32221 1222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (580)
..+...++.++|+..+++..+. .| +...+..+...+...|++++|...+.++++...-..+...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3355667777788888888775 44 55777788888888888888888888877643323335667777777777777
Q ss_pred hHHHHHHHHh
Q 041384 486 IEDACKVVST 495 (580)
Q Consensus 486 ~~~A~~~~~~ 495 (580)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777766654
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.3e-06 Score=79.10 Aligned_cols=230 Identities=8% Similarity=-0.017 Sum_probs=119.0
Q ss_pred HhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh----Hhc
Q 041384 309 SQSGD-LSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS--FLSHGLGVHCYIMKAGLNFDVSIGNALMNMY----SKC 381 (580)
Q Consensus 309 ~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 381 (580)
.+.|. .++|+.++..+...+ +-+...++.--..+...+ +++++++.++.+.... +-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 34444 457888888887663 223344555555555666 7777777777777654 22333444333333 333
Q ss_pred ---CCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----
Q 041384 382 ---GSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGE--EALQLFLEMQESGVEPDAITVLAILSACNHAGL---- 449 (580)
Q Consensus 382 ---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~---- 449 (580)
++++++..+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 556666666665554 23345555555555555555 6666666666542 2244555544444444444
Q ss_pred --HHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHH
Q 041384 450 --VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED-ACKVVSTMP-M----KPSTRILSSLVSACRIHGRLEVA 521 (580)
Q Consensus 450 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~A 521 (580)
++++++.+++++. -.+-+...|+.+...+.+.|+..+ +..+..+.. . ..++..+..++..+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 5555555555443 122334445555555555554322 333444431 1 22444555555555555555555
Q ss_pred HHHHHHHHh-cCCCCchHHHHHH
Q 041384 522 EMLAHQLIE-AEPENAANYTLLS 543 (580)
Q Consensus 522 ~~~~~~~~~-~~~~~~~~~~~l~ 543 (580)
+++++.+.+ .+|.....|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 555555554 4555555444433
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=1.3e-07 Score=82.67 Aligned_cols=187 Identities=9% Similarity=-0.040 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHhcCCHHHHHHHHhcCCC--CC-cc---hHHHH
Q 041384 334 VTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNF--DVSIGNALMNMYSKCGSITSSHQIFNEMAA--RD-FV---SWTTL 405 (580)
Q Consensus 334 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~~l 405 (580)
..+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ |+ .. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455556666777777777777777643221 134555566666667777777776666554 22 11 23333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh---------------
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI--------------- 470 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------- 470 (580)
..++...+.. .+ ..|..+...+...|++++|...|+++++...-.+..
T Consensus 85 g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 85 GLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 3333321100 00 000001111122344555555555543311111110
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTMP-MKPST----RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.....+...|.+.|++++|+..|+++. ..|+. ..+..+..++.+.|+.++|+..++.+....|.+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011346677889999999999999872 33432 46888899999999999999999999988887654
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=5.4e-06 Score=74.96 Aligned_cols=213 Identities=10% Similarity=0.066 Sum_probs=166.0
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC--CHHHHHHHHhcCCCC---CcchHHHHHHHH----Hhc---CCh
Q 041384 348 FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG--SITSSHQIFNEMAAR---DFVSWTTLISGY----GFH---GYG 415 (580)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~ 415 (580)
..++|+...+.+.... +-+..+|+.--.++...| +++++++.++.+... +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457888888888765 345566777777777778 999999999988763 445666655555 455 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC------hH
Q 041384 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK--EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK------IE 487 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 487 (580)
++++.+++++.+.. +-|..++..-...+...|.++ ++++.++++++. .+-+...|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999862 336778877777777788888 999999998763 33456677776666777776 89
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 488 DACKVVSTM-P-MKPSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAE---PENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 488 ~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
++++.++++ . .+-|...|+.+...+.+.|+. +.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998887 3 345888999998888888874 44667888877766 88999999999999999999999999999
Q ss_pred HHh
Q 041384 562 MRA 564 (580)
Q Consensus 562 ~~~ 564 (580)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=2.6e-07 Score=79.97 Aligned_cols=131 Identities=10% Similarity=-0.065 Sum_probs=100.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLV 450 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 450 (580)
+..+...+...|++++|...|++...++...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45566677788888888888888887777888888888888888888888888888753 33567788888888888888
Q ss_pred HHHHHHHHHHHHhhCCCC--------------ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 041384 451 KEAETLFNNVMKEKKIAL--------------AIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPST 502 (580)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 502 (580)
++|...|+++++...-.+ ....+..+..+|...|++++|...|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888765222111 1266778888888888888888888877 455654
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.4e-07 Score=87.91 Aligned_cols=128 Identities=14% Similarity=0.035 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-------------ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCC
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIAL-------------AIEHYACYVDLLGKSGKIEDACKVVSTM-P-MKP 500 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p 500 (580)
.+..+...+...|++++|...|+++++.....+ ....+..+..+|.+.|++++|+..+++. . .+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555555555555555443111110 0356778888888888888888888877 2 334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGA-EEVWRVMR 563 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 563 (580)
+...+..+..+|...|++++|+..|+++++.+|.++.++..++.++...|++++| ...+++|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999998 44566654
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=3.8e-08 Score=82.41 Aligned_cols=127 Identities=9% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH-hhhcCCh-
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL-LGKSGKI- 486 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 486 (580)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++++.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 345567777777777777652 3355677777777777888888888888766532 2245556666666 6667776
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 487 -EDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 487 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 7777777766 2233 45666677777777777777777777777777776553
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=9.9e-06 Score=79.40 Aligned_cols=202 Identities=10% Similarity=-0.034 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 041384 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESG 429 (580)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 429 (580)
+.+..+|+.+.... +.+..+|...+..+.+.|+++.|..++++.... +..... -..|....+.++. ++.+.+.-
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l-~~~y~~~~e~~~~---~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL-SLYYGLVMDEEAV---YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH-HHHHHHHTTCTHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH-HHHHHhhcchhHH---HHHHHHHH
Confidence 45667888877754 556788888888888999999999999976553 222111 1122222222222 23332210
Q ss_pred ---------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhC
Q 041384 430 ---------VEP---DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG-KIEDACKVVSTM 496 (580)
Q Consensus 430 ---------~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 496 (580)
..+ ....|...+....+.++.+.|..+|+++ +..+ .+...|...+..-...+ +.+.|..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 011 1244566666666788899999999996 3221 34444543333333334 699999999887
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 497 P--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 497 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
. .+.++..|...+.-..+.|+.+.|..+++++ +.+...|...+..-...|+.+.+..++++..+
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 3234556677777778899999999999998 34677888888887888999999999888864
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=2.5e-07 Score=71.94 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSA 511 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 511 (580)
...+..+...+...|++++|...++++++. .+.+...+..++..+.+.|++++|...++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 355666667777777788887777776542 22345566777777777888888887777762 23466778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999888888888776554
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=8.1e-08 Score=76.91 Aligned_cols=89 Identities=18% Similarity=0.015 Sum_probs=42.0
Q ss_pred HHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 041384 476 YVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
+...+.+.|++++|+..|++. . .+.+...|..+..++.+.|++++|+..++++.+.+|.++..+..++.+|...|+++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 333444444444444444443 1 12234444444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 041384 554 GAEEVWRVMRA 564 (580)
Q Consensus 554 ~A~~~~~~~~~ 564 (580)
+|.+.+++..+
T Consensus 104 ~A~~~~~~al~ 114 (142)
T 2xcb_A 104 GAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=1.6e-07 Score=73.70 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSA 511 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 511 (580)
...+..+...+...|++++|...++++++. .+.+...+..+...+...|++++|...+++.. .+.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 355666667777778888888888776652 23345667777777788888888888777762 23456788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
+...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=1.7e-07 Score=73.94 Aligned_cols=116 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSA 511 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 511 (580)
...+..+...+...|++++|...++++++ ..+.+...+..+..++...|++++|++.+++.. .+.+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555666666666777777777666543 122345556666666677777777777666652 23356677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 041384 512 CRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGN 551 (580)
Q Consensus 512 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 551 (580)
+...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877664
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=1.1e-07 Score=72.25 Aligned_cols=100 Identities=13% Similarity=-0.034 Sum_probs=83.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE--NAANYTLLSMV 545 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 545 (580)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++.+..|. +..++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4455667777777888888888777762 2346678888999999999999999999999999999 99999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCcc
Q 041384 546 CSES-GNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 546 ~~~~-g~~~~A~~~~~~~~~~~~~~ 569 (580)
+... |++++|.+.+++..+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999988876543
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.2e-07 Score=74.18 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
.+..+...+.+.|++++|+..|++. . .+.+...|..+..++.+.|++++|+..++++.+.+|.++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555555666666666666554 1 2234556666666666677777777777777777777776777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 041384 550 GNWLGAEEVWRVMRAK 565 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~ 565 (580)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 7777777776666553
No 132
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=1.3e-07 Score=78.98 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCchHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-hhc
Q 041384 66 SNSLISMYAKFSKPESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISL-CSQ 141 (580)
Q Consensus 66 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 141 (580)
+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+.. |++..+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3445556677777777777777765 3355667777777777777777777777765542 233322221111 112
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCC--C---CeehHHHHHHHHHhcCChhHHH
Q 041384 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVI--R---NEVSWTAMISGCIDSQNYDTGI 216 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~ 216 (580)
.+....+...++..++.. |.+...+..+...+...|++++|...|+++.. | +...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334566777777664 55667777777777777777777777776632 2 2335666777777777777777
Q ss_pred HHHHHHH
Q 041384 217 DLFRAMQ 223 (580)
Q Consensus 217 ~~~~~m~ 223 (580)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=7e-07 Score=77.02 Aligned_cols=162 Identities=12% Similarity=-0.049 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLISGYGFHG----YGEEALQLFLEMQESGVEPDAITVLAILS 442 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 442 (580)
+..+..+...|...+++++|...|++..+. ++..+..|...|.. + ++++|+++|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 344444555555555555555555554442 34455555555555 4 6777777777776643 5566666666
Q ss_pred HHhc----cCCHHHHHHHHHHHHHhhCCC-CChhHHHHHHHHhhh----cCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 041384 443 ACNH----AGLVKEAETLFNNVMKEKKIA-LAIEHYACYVDLLGK----SGKIEDACKVVSTMP-MKPSTRILSSLVSAC 512 (580)
Q Consensus 443 ~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 512 (580)
.|.. .+++++|..+|++..+ .+.. .....+..|...|.. .+++++|...|++.. ..++...+..|...|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666 7788888888887543 2211 115667777777777 778888888888773 335666677777777
Q ss_pred Hhc-C-----CHHHHHHHHHHHHhcCCC
Q 041384 513 RIH-G-----RLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 513 ~~~-~-----~~~~A~~~~~~~~~~~~~ 534 (580)
... | +.++|...++++.+.+.+
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 543 3 788888888888877643
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=4.5e-08 Score=88.75 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=124.7
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 041384 368 VSIGNALMNMYSKCGSITSSHQIFNEMAA---RDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSA 443 (580)
Q Consensus 368 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~ 443 (580)
...+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555566667777777777777776554 25567777888888888888888888888774 45 55777788888
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCC---ChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIAL---AIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 520 (580)
+...|++++|...|+++++...-.+ ....+..+ ...+...+.. ......+++......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8889999999998888765321111 11111111 1122211211 222233444444444433 3 2688999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 041384 521 AEMLAHQLIEAEPENAANYTLLSMVCSES-GNWLGAEEVWRVMRAK 565 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (580)
|++.++++.+.+|.+......+...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999888888887777776 7889999999987664
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=1e-07 Score=73.69 Aligned_cols=96 Identities=13% Similarity=-0.006 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++.+.+|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677788899999999999887 2344 7788899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 041384 550 GNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 550 g~~~~A~~~~~~~~~~~~ 567 (580)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999877543
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.63 E-value=3.9e-07 Score=72.30 Aligned_cols=93 Identities=10% Similarity=-0.081 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSES 549 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (580)
.+..+...+...|++++|+..|++. . .+.+...+..+...+...|++++|+..++++.+.+|.++..+..++.++...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3334444444444444444444433 1 1223444455555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 041384 550 GNWLGAEEVWRVMRA 564 (580)
Q Consensus 550 g~~~~A~~~~~~~~~ 564 (580)
|++++|...+++..+
T Consensus 91 ~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 91 ESYDEAIANLQRAYS 105 (137)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=5.1e-07 Score=72.53 Aligned_cols=105 Identities=9% Similarity=0.015 Sum_probs=87.6
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 041384 430 VEPD-AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILS 506 (580)
Q Consensus 430 ~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 506 (580)
+.|+ ...+..+...+...|++++|...|+++++. .+.+...|..+..+|...|++++|+..|++. ...| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4553 356777888899999999999999997762 2345778889999999999999999999988 3344 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
.+..+|...|++++|+..|+++.+..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998765
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.62 E-value=2.7e-07 Score=75.98 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVS 510 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 510 (580)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44677888888999999999999999977632 335778888999999999999999999887 3334 6788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
++...|++++|+..++++++..|.++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999998886655543
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.3e-06 Score=79.77 Aligned_cols=161 Identities=10% Similarity=-0.079 Sum_probs=109.6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHhcCCCC---Cc------chHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHH
Q 041384 371 GNALMNMYSKCGSITSSHQIFNEMAAR---DF------VSWTTLISGYGFHGYGEEALQLFLEMQESGV---EPD--AIT 436 (580)
Q Consensus 371 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~---~p~--~~~ 436 (580)
+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334555667777777777777644331 11 1233455666777888889888888775321 111 347
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------CHH
Q 041384 437 VLAILSACNHAGLVKEAETLFNNVMKEKKIALA-----IEHYACYVDLLGKSGKIEDACKVVSTMP-MKP-------STR 503 (580)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~~ 503 (580)
+..+...|...|++++|...++++++-....|+ ..++..+...|...|++++|+..+++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 778888888899999999999887732111222 2577888888899999999988888762 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 041384 504 ILSSLVSACRIHGRLEVA-EMLAHQLIEA 531 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 531 (580)
++..+...|.+.|++++| ...++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 778888889999999999 7778887653
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=5.1e-07 Score=69.27 Aligned_cols=106 Identities=14% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSACR 513 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 513 (580)
.+..+...+...|++++|...+++++.. .+.+...+..+..++...|++++|...+++. .. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444445555555555555555554431 1123334444444444555555555444444 11 123344444444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
..|++++|...++++.+..|.++..+..++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555555555555554444444444443
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=7e-06 Score=74.90 Aligned_cols=158 Identities=10% Similarity=-0.081 Sum_probs=117.6
Q ss_pred HHHHhHhcCCHHHHHHHHhcCCCCCc---------chHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 041384 374 LMNMYSKCGSITSSHQIFNEMAARDF---------VSWTTLISGYGFHGYGEEALQLFLEMQESGVE-PD----AITVLA 439 (580)
Q Consensus 374 l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~----~~~~~~ 439 (580)
.+..+...|++++|..++++...... ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999988887655211 12334666677778999999999999874222 23 236888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhh----CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEK----KIALA-IEHYACYVDLLGKSGKIEDACKVVSTMP-------MKPS-TRILS 506 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 506 (580)
+...|...|++++|...++++++.. +..+. ..++..+...|.+.|++++|+..+++.. ..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999977422 22222 3477889999999999999999988762 1122 56888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 041384 507 SLVSACRIHG-RLEVAEMLAHQLIEA 531 (580)
Q Consensus 507 ~l~~~~~~~~-~~~~A~~~~~~~~~~ 531 (580)
.+...+.+.| ++++|...++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 569999999998764
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=4.3e-07 Score=71.53 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 334667888999999999999999999987 3444 77889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 041384 545 VCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
++...|++++|.+.+++..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999887543
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.9e-07 Score=72.86 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=60.4
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hHHHHHH
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA-------ANYTLLS 543 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~ 543 (580)
+..+...+.+.|++++|+..|++. ...| +...|..+..+|.+.|++++|+..++++++.+|.+. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445556666666666666666655 2233 456666777777777777777777777777665543 2466666
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 041384 544 MVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.++...|++++|++.|++.++.
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777777777776653
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.6e-06 Score=74.20 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=82.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh---CCCC-ChhHHHHHHHHhhhcCCh
Q 041384 411 FHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK---KIAL-AIEHYACYVDLLGKSGKI 486 (580)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 486 (580)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.++.. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11123455555555666666666666666544311 1111 133455556666666666
Q ss_pred HHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----chHHHHHHHHHHhcCC
Q 041384 487 EDACKVVSTMP----MKP-S----TRILSSLVSACRIHGRLEVAEMLAHQLIEAE--PEN----AANYTLLSMVCSESGN 551 (580)
Q Consensus 487 ~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~ 551 (580)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++.+.. ..+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665541 011 1 2345666667777777777777777776543 111 2235677777777788
Q ss_pred hHHHHHHHHHHHh
Q 041384 552 WLGAEEVWRVMRA 564 (580)
Q Consensus 552 ~~~A~~~~~~~~~ 564 (580)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777777776654
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=8.5e-07 Score=78.23 Aligned_cols=123 Identities=12% Similarity=-0.028 Sum_probs=57.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 041384 441 LSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPST----RILSSLVSACRIHG 516 (580)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~ 516 (580)
...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++.+.|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3344455555555555554221 1122113334444455555555555555544222221 23444555555555
Q ss_pred CHHHHHHHHHHHHhcC--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 517 RLEVAEMLAHQLIEAE--PE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5555555555554322 22 23344555555555555555555555555443
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.7e-07 Score=75.44 Aligned_cols=108 Identities=12% Similarity=-0.013 Sum_probs=86.0
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHH
Q 041384 431 EP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSS 507 (580)
Q Consensus 431 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ 507 (580)
.| +...+..+...+...|++++|...|++++.. .+.+...+..+..+|...|++++|+..|++. .. +.++..+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45 3356666777888889999999999887652 2345667788888889999999999998887 23 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAEPENAANYT 540 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 540 (580)
+..++...|++++|+..++++.+..|.++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999999998877533
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=6.8e-07 Score=69.35 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567888899999999999999999883 34467888999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 041384 548 ESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~ 567 (580)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999887654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=7e-07 Score=76.17 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
..+..+..+|...|++++|+..+++. . .+.+...+..+..++...|++++|+..++++.+..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45677777888888888888888776 2 334677888999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 041384 549 SGNWLGAE-EVWRVMRAKG 566 (580)
Q Consensus 549 ~g~~~~A~-~~~~~~~~~~ 566 (580)
.|+.+++. ..++.+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888887 5566665443
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=8.9e-07 Score=71.23 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILS 506 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 506 (580)
+...+..+...+...|++++|...|+++++ ..|+ ...+..+..+|...|++++|+..+++. ... .+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445666666677777777777777777543 3344 455666666666677777777666655 222 2455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
.+...+...|++++|...++++.+..|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666667777777777777766666666665555543
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=7.2e-07 Score=78.67 Aligned_cols=137 Identities=12% Similarity=-0.026 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHh
Q 041384 403 TTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA--IEHYACYVDLL 480 (580)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 480 (580)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777664 35444444555567888888888888876332 11 111 23567788888
Q ss_pred hhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 481 GKSGKIEDACKVVSTMPMK---PS--TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.+.|++++|+..|++.... |. .........++.+.|+.++|...|+++...+|. +.+...|.+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8899999999888887312 43 346677778888999999999999999999998 776666643
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=1.8e-06 Score=66.17 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=82.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456777888888999999999888872 33467788888888888999999999999999999988888999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 041384 548 ESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~ 567 (580)
..|++++|.+.+++..+.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999988877654
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1.1e-06 Score=73.39 Aligned_cols=123 Identities=7% Similarity=0.064 Sum_probs=97.4
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH--
Q 041384 444 CNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSA-CRIHGRL-- 518 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~-- 518 (580)
+...|++++|...+++.++. .+.+...+..+...|...|++++|...|++.. .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888898888887653 23456778888999999999999999998872 23466777888888 7788888
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 519 EVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 519 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
++|+..++++.+.+|.++..+..++.+|...|++++|...++++.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999998887654
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=8e-07 Score=69.65 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 469 AIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45667788899999999999999999872 3447788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 041384 547 SESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~ 567 (580)
...|++++|.+.+++..+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999887654
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.4e-06 Score=67.88 Aligned_cols=110 Identities=9% Similarity=-0.086 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSAC 512 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 512 (580)
..+..+...+...|++++|+..|+++++. .+.+...+..+..+|.+.|++++|+..+++. ... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44555666677777777777777776652 2334566777777777888888888777776 223 3567888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHH
Q 041384 513 RIHGRLEVAEMLAHQLIEAE------PENAANYTLLSMVC 546 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~ 546 (580)
...|++++|+..++++.+.+ |.+..+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999988 88887777776654
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=3.4e-06 Score=67.70 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=79.1
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
.+...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 34666777778888888888888888877 45565 56777778888888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 543 SMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+.++...|++++|.+.+++..+...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888776543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=1e-06 Score=70.35 Aligned_cols=107 Identities=16% Similarity=0.016 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M-KPSTRILSSLVSAC 512 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~ 512 (580)
..+..+...+...|++++|...|+++++. .+.+...|..+..+|.+.|++++|+..|++.. . +.++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44555666777888888888888886652 23356667778888888888888888888772 2 34667788888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLS 543 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 543 (580)
...|++++|+..++++.+..|.++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998887655443
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.47 E-value=8.2e-07 Score=70.48 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHh
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPM-KPSTRILSSLVSACRI 514 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~ 514 (580)
.+......+...|++++|+..|+++++-..-.|+.. .... +.+...|..+..++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------------a~~~~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------------AFDHAGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------------hhhhccchHHHHHHHHHHHHH
Confidence 344455556667777777777777665322222210 0000 0123378888888888
Q ss_pred cCCHHHHHHHHHHHHhc-------CCCCchHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 515 HGRLEVAEMLAHQLIEA-------EPENAANY----TLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.|++++|+..++++++. +|+++..| ...+.++...|++++|++.|++..+.
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888 89998888 99999999999999999999888663
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.1e-06 Score=73.47 Aligned_cols=153 Identities=12% Similarity=-0.029 Sum_probs=93.6
Q ss_pred hcCCHHHHHH---HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHH
Q 041384 380 KCGSITSSHQ---IFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQES----GVEP-DAITVLAILSACNHAGLVK 451 (580)
Q Consensus 380 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~ 451 (580)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345666666666777777777777666541 1122 2345666777777888888
Q ss_pred HHHHHHHHHHHhhCCCC-----ChhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCH
Q 041384 452 EAETLFNNVMKEKKIAL-----AIEHYACYVDLLGKSGKIEDACKVVSTMP----MKPS----TRILSSLVSACRIHGRL 518 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~ 518 (580)
+|...+++.++.....+ ....+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877655321111 13456677777888888888888777652 1112 23456777888888999
Q ss_pred HHHHHHHHHHHhcC
Q 041384 519 EVAEMLAHQLIEAE 532 (580)
Q Consensus 519 ~~A~~~~~~~~~~~ 532 (580)
++|...++++.+..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877653
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=1.1e-06 Score=68.78 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=56.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALA-IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS----TRILSSLVSACR 513 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~ 513 (580)
+...+...|++++|...|+++++.....+. ...+..+..++.+.|++++|...+++. ...|+ ...+..+...+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556667777777777665542211110 134555666666666666666666655 12222 344555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 041384 514 IHGRLEVAEMLAHQLIEAEPENAANYTLL 542 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 542 (580)
..|++++|...++++.+..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 66666666666666666666655544433
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=2.1e-06 Score=70.52 Aligned_cols=92 Identities=9% Similarity=-0.086 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
.+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..++++++. .+.+...+..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444455555555555555555555543 23 3444555555555555555555555554431 11224445555555
Q ss_pred hhhcCChHHHHHHHHhC
Q 041384 480 LGKSGKIEDACKVVSTM 496 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~ 496 (580)
|...|++++|...|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555544
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=2.6e-06 Score=83.07 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=74.6
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...|..+..+|.+.|++++|+..+++. . .+.+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888887 2 33467788999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHH
Q 041384 548 ESGNWLGAEE-VWRVM 562 (580)
Q Consensus 548 ~~g~~~~A~~-~~~~~ 562 (580)
+.|++++|.. .+++|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988764 34444
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=0.00024 Score=64.90 Aligned_cols=174 Identities=9% Similarity=-0.030 Sum_probs=107.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-C-C
Q 041384 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQS-FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC-G-S 383 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 383 (580)
.....+..++|+.++.++...+ +-+...++.--..+...+ .+++++.+++.+.... +-+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555678999999988774 234445555555555566 5888888888888754 34556666655555555 5 7
Q ss_pred HHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---
Q 041384 384 ITSSHQIFNEMAARD---FVSWTTLISGYGFHGYGE--------EALQLFLEMQESGVEPDAITVLAILSACNHAGL--- 449 (580)
Q Consensus 384 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~--- 449 (580)
++++.++++++.+.| ...|+.-.-.+.+.+.++ ++++.++++.+.. .-|...++.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 788888888877644 345554444444444444 7788888887753 2356666666666666654
Q ss_pred ----HHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC
Q 041384 450 ----VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485 (580)
Q Consensus 450 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (580)
++++++.+++++. -.+-|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5677777776654 223344555555555555444
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=2.7e-06 Score=67.32 Aligned_cols=113 Identities=12% Similarity=-0.069 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 041384 432 PDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLV 509 (580)
Q Consensus 432 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 509 (580)
.+...+..+...+...|++++|...|+++++. .+.+...+..+..++...|++++|...+++.. .+.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35567777777788888888888888886652 23346677778888888888888888887762 234677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHH
Q 041384 510 SACRIHGRLEVAEMLAHQLIEAEPE-----NAANYTLLSMVC 546 (580)
Q Consensus 510 ~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~ 546 (580)
..+...|++++|+..++++.+..|. +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876 555555555443
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=3.1e-06 Score=69.57 Aligned_cols=97 Identities=14% Similarity=-0.023 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
..+..+...+...|++++|...|++.. .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 456778888999999999999999872 344778899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 041384 549 SGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 549 ~g~~~~A~~~~~~~~~~~~ 567 (580)
.|++++|.+.+++..+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999987654
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.39 E-value=4e-07 Score=69.93 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHhhC--CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 041384 447 AGLVKEAETLFNNVMKEKK--IALAIEHYACYVDLLGKSGKIEDACKVVSTM-PM-KPSTRILSSLVSACRIHGRLEVAE 522 (580)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~ 522 (580)
.|++++|+..|+++++ .+ .+.+...+..+..+|...|++++|+..|++. .. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555555566655443 11 1122334444555555555555555555544 11 223444444555555555555555
Q ss_pred HHHHHHHhcCCCCch
Q 041384 523 MLAHQLIEAEPENAA 537 (580)
Q Consensus 523 ~~~~~~~~~~~~~~~ 537 (580)
..++++.+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 555555555554444
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=4e-05 Score=70.07 Aligned_cols=213 Identities=9% Similarity=0.040 Sum_probs=152.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC-CHHHHHHHHhcCCCC---CcchHHHHHHHHHhc-C-ChHHHHH
Q 041384 347 SFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG-SITSSHQIFNEMAAR---DFVSWTTLISGYGFH-G-YGEEALQ 420 (580)
Q Consensus 347 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~ 420 (580)
+..++|+++++.+.... +-+..+|+.--..+...| .+++++.+++.+... +..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34567888888888765 345566676666677777 599999999988764 445677666666665 6 8899999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCCHH--------HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC------
Q 041384 421 LFLEMQESGVEP-DAITVLAILSACNHAGLVK--------EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK------ 485 (580)
Q Consensus 421 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 485 (580)
.++++.+. .| |...+..-...+.+.|.++ ++++.++++++. .+-+...|+.....+.+.++
T Consensus 147 ~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 99999985 44 6667666555555555555 899999987762 34466778888888888776
Q ss_pred -hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCc
Q 041384 486 -IEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRL--------------------EVAEMLAHQLIEAE------PENA 536 (580)
Q Consensus 486 -~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------~~~~ 536 (580)
++++++.++++ . .+-|...|+.+-..+.+.|+. ....+....+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888777 3 344778888877777776653 33444444444332 5788
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 537 ANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.++..++++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8899999999999999999999999864
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=1.6e-06 Score=67.94 Aligned_cols=109 Identities=3% Similarity=-0.037 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-C----CCC----HHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP-M----KPS----TRIL 505 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~ 505 (580)
..+..+...+...|++++|...++++++. .+.+...+..+...|...|++++|...+++.. . .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666777778888888888888886652 23345667777777778888888888777762 1 122 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
..+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7777777788888888888888877776 565555555544
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=1.5e-06 Score=71.28 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC----------------CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKK----------------IALAIEHYACYVDLLGKSGKIEDACKVVSTM- 496 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 496 (580)
...+......+.+.|++++|+..|.+++.... .+.....|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35567777888889999999999988765310 0111344555666666666666666666555
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 041384 497 PM-KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 497 ~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 536 (580)
.. +.+...|..+..++...|++++|+..++++++.+|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 22 23455566666666666666666666666666666655
No 169
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.1e-06 Score=70.25 Aligned_cols=130 Identities=12% Similarity=-0.068 Sum_probs=80.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKSGKIEDACKVVSTMP----MKP----STR 503 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~ 503 (580)
++..+...+...|++++|...++++++...-.++ ..++..+...+...|++++|.+.+++.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432111111 1245555556666666666666665541 011 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEP------ENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+..+...+...|++++|...++++.+..+ ....++..++.++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566777788888888888888888876531 23456888999999999999999999887653
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.2e-05 Score=78.18 Aligned_cols=163 Identities=9% Similarity=-0.054 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHh---hCCCCC-hhH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESG-VEPDA----ITVLAILSACNHAGLVKEAETLFNNVMKE---KKIALA-IEH 472 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~ 472 (580)
+..+...|...|++++|.+.+..+...- -.++. ...+.+...+...|+++.|..+++..+.. .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765421 11222 12333444455678899999888876542 222222 456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----ch
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-------MKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAE---PEN----AA 537 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~ 537 (580)
+..++..|...|++++|..++++.. .++ ...++..++..|...|++++|...++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788899999999999999888761 112 23577888899999999999999999988654 222 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 538 NYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 577788888899999999988877654
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.34 E-value=1.1e-06 Score=81.91 Aligned_cols=151 Identities=12% Similarity=-0.024 Sum_probs=81.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 400 VSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
..+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 35666667777788888888888887764 454332 223344444332221 1367888999
Q ss_pred hhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHhcCChHHHH
Q 041384 480 LGKSGKIEDACKVVSTM-PMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV-CSESGNWLGAE 556 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 556 (580)
|.+.|++++|+..+++. ... .+...|..+..+|...|++++|+..|+++.+.+|.++.++..+..+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 333 4678899999999999999999999999999999999999998887 44567788889
Q ss_pred HHHHHHHhCCCccC
Q 041384 557 EVWRVMRAKGLSKS 570 (580)
Q Consensus 557 ~~~~~~~~~~~~~~ 570 (580)
..++++........
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99998877655433
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.6e-06 Score=84.97 Aligned_cols=117 Identities=7% Similarity=-0.066 Sum_probs=92.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLE 519 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 519 (580)
..+.+.|++++|.+.++++++. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888887652 2334667788888888888888888888877 2344 6778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHH
Q 041384 520 VAEMLAHQLIEAEPENAANYTLLSMV--CSESGNWLGAEEVWR 560 (580)
Q Consensus 520 ~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 560 (580)
+|+..++++.+..|.++..+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999888 888999999999988
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=4.6e-06 Score=75.44 Aligned_cols=111 Identities=12% Similarity=-0.083 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVS 510 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 510 (580)
+...+..+...+...|++++|...|+++++. .+.+...+..+..+|.+.|++++|+..+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777888888899999999999987763 2335677888888888899999999888886 3444 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 041384 511 ACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMV 545 (580)
Q Consensus 511 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 545 (580)
++...|++++|+..++++.+.+|.++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 88888999999999999888887765444434433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=3.7e-06 Score=65.75 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCC----hhHHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKI-ALA----IEHYACY 476 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 476 (580)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++.... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444445555555555555555555431 223344444555555555555555555554432111 111 3344445
Q ss_pred HHHhhhcCChHHHHHHHHhC
Q 041384 477 VDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~ 496 (580)
..++...|++++|.+.|++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 55555555555555555544
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.25 E-value=8.1e-06 Score=76.85 Aligned_cols=89 Identities=15% Similarity=0.006 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCS 547 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 547 (580)
...|..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++.+..|.+..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 4445 67788999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHH
Q 041384 548 ESGNWLGAEEV 558 (580)
Q Consensus 548 ~~g~~~~A~~~ 558 (580)
..|+.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888887654
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=5.9e-06 Score=62.46 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP---STRILSSLVSA 511 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 511 (580)
.+..+...+...|++++|...++++++. .+.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3344444555555555555555554431 1223444555555555566666666655554 1222 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 041384 512 CRIH-GRLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 512 ~~~~-~~~~~A~~~~~~~~~~~~~~~ 536 (580)
+... |++++|.+.++++....|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777766543
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=1.1e-05 Score=68.73 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 503 RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
..+..+...+...|++++|+..++++.+..|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 67888899999999999999999999999999999999999999999999999999999887643
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=2.3e-05 Score=61.02 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=63.5
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHH
Q 041384 475 CYVDLLGKSGKIEDACKVVSTMP-MKPS-T---RILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN---AANYTLLSMVC 546 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 546 (580)
.+...+...|++++|...|++.. ..|+ . ..+..+...+...|++++|+..++++.+..|.+ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 45566667777777777777662 2232 2 366667777777777777777777777777777 66677777777
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 041384 547 SESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~ 566 (580)
...|++++|...++++.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777776644
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=5e-06 Score=77.39 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS----------------TRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
...+..+...|.+.|++++|+..|++. ...|+ ...|..+...+.+.|++++|+..++++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556788899999999999999999987 33343 4789999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
|.++.++..++.+|...|++++|+..|+++.+..+
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999987654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=6.8e-06 Score=63.27 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=59.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 041384 439 AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHG 516 (580)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 516 (580)
.+...+.+.|++++|...++++++. .+.+...+..+..++...|++++|+..|++. ...| +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445556666777777777665542 2234555666666677777777777777665 2333 5567777778888888
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 041384 517 RLEVAEMLAHQLIEAEPENA 536 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~ 536 (580)
++++|+..++++++.+|.++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888777654
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=1.9e-05 Score=61.40 Aligned_cols=59 Identities=10% Similarity=-0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 402 WTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
+..+...+.+.|++++|++.|++..+. .| +...|..+..+|...|++++|+..++++++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555666666666666666666653 33 345555566666666666666666666543
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=1.8e-06 Score=66.23 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=65.4
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 041384 482 KSGKIEDACKVVSTM-PM---KP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 482 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
..|++++|+..|++. .. .| +...+..+...|...|++++|+..++++.+.+|.++.++..++.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888877 33 24 44677888888888899999999999998888888888888888888899999999
Q ss_pred HHHHHHHhCC
Q 041384 557 EVWRVMRAKG 566 (580)
Q Consensus 557 ~~~~~~~~~~ 566 (580)
+.+++..+..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888877653
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=6.1e-06 Score=67.58 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=63.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 473 YACYVDLLGKSGKIEDACKVVSTMP-M------------------KP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
+......+.+.|++++|+..|++.. . .| +...|..+..+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3445566667777777777776651 1 11 22456667777777777777777777777777
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|.++.+|..++.+|...|++++|...+++..+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777766654
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.17 E-value=1.1e-05 Score=59.55 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 500 PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
.+...+..+...+...|++++|+..++++.+.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356778888888889999999999999999999999999999999999999999999998887653
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=6e-06 Score=80.19 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred HhccCCHHHHHHHHHHHHHhhC--CCC----ChhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCH-HHHHH
Q 041384 444 CNHAGLVKEAETLFNNVMKEKK--IAL----AIEHYACYVDLLGKSGKIEDACKVVSTMP---------MKPST-RILSS 507 (580)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 507 (580)
+..+|++++|+.++++.++... +.| ...+++.|+..|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888888877665321 112 25567788888888888888888777651 22332 46788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIE-----AEPENAAN---YTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
|...|...|++++|+.+++++++ .+|+++.+ ...+..++...|.+++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886 35666554 5678888889999999999999998754
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00061 Score=61.99 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=66.4
Q ss_pred HhCCChh-HHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCC----------hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 041384 309 SQSGDLS-EAMKLFSRMRLERIEPNSVT-LLAILSSCTRQSF----------LSHGLGVHCYIMKAGLNFDVSIGNALMN 376 (580)
Q Consensus 309 ~~~~~~~-~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 376 (580)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. +++++.+++.+.... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455544 788888888865 454433 3322222211111 455666666666543 334555555444
Q ss_pred HhHhcC--CHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041384 377 MYSKCG--SITSSHQIFNEMAA---RDFVSWTTLISGYGFHGY-GEEALQLFLEMQESGVEPDAITVLAIL 441 (580)
Q Consensus 377 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~g~~p~~~~~~~l~ 441 (580)
++.+.+ .++++..+++.+.+ .|...|+.-.-.+...|. ++++++.++++.+.. +-|...|+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~ 186 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 186 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 454555 35666666666554 244455555555555555 366666666666642 22444444433
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00052 Score=62.42 Aligned_cols=214 Identities=10% Similarity=-0.011 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHhcCCC---CCcchHHHHHHHHHhcC--C
Q 041384 350 SHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS----------ITSSHQIFNEMAA---RDFVSWTTLISGYGFHG--Y 414 (580)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~ 414 (580)
++|+...+.+.... +-+..+|+.--..+...+. ++++..+++.+.. ++..+|+.-.-.+...+ .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46777777777554 2233344433333322222 5778888887765 35567777777777777 4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhc----------
Q 041384 415 GEEALQLFLEMQESGVEPDAITVLAILSACNHAGL-VKEAETLFNNVMKEKKIALAIEHYACYVDLLGKS---------- 483 (580)
Q Consensus 415 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 483 (580)
+++++..++++.+.. +-|...|+.-...+...|. ++++++.++++++. .+-+...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 899999999999863 3366777777777777787 68999999998763 344566676666555544
Q ss_pred ----CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 041384 484 ----GKIEDACKVVSTM-P-MKPSTRILSSLVSACRIH-----------GRLEVAEMLAHQLIEAEPENAANYTLLSMVC 546 (580)
Q Consensus 484 ----g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (580)
+.++++++.+.+. . .+-|...|+-+-..+.+. +.++++++.++++.+..|++.-++..++...
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4578888888877 2 344777887666666554 4578999999999999999866554444322
Q ss_pred ---HhcCChHHHHHHHHHHHhCCC
Q 041384 547 ---SESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 547 ---~~~g~~~~A~~~~~~~~~~~~ 567 (580)
-..|..++....++++.+.++
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HhhcccccHHHHHHHHHHHHHhCc
Confidence 246788899999999887553
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.6e-06 Score=65.71 Aligned_cols=92 Identities=13% Similarity=-0.038 Sum_probs=73.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHH
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN------AANYTL 541 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 541 (580)
...+..+...+...|++++|++.|++. . .+.+...+..+..++...|++++|+..++++.+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777777888888888887776 2 23467788889999999999999999999999999998 778888
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 041384 542 LSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~ 561 (580)
++.++...|++++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888888877765543
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=6.1e-05 Score=73.08 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=116.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh
Q 041384 407 SGYGFHGYGEEALQLFLEMQESGVEPD----------------AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI 470 (580)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (580)
..+...|++++|++.|..+.+...... ...+..+...|...|++++|.+++..+++-.+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777777776421110 1246778899999999999999999876643333322
Q ss_pred ----hHHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 041384 471 ----EHYACYVDLLGKSGKIEDACKVVSTM-------PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAE------ 532 (580)
Q Consensus 471 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 532 (580)
.+.+.+...+...|+.++|..++++. ...+ ...++..++..+...|++++|..+++++...-
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444555667789999999988765 1222 34677889999999999999999999987542
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|....++..++..|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456789999999999999999999998765
No 190
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=2.5e-05 Score=56.26 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 041384 499 KPSTRILSSLVSACRIHGR---LEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSYG 572 (580)
Q Consensus 499 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (580)
++++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+.+|+++.+.... +|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4577788888888865554 699999999999999999999999999999999999999999999998766 554
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.4e-05 Score=60.94 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+...+..+...+...|++++|+..++++.+.+|.++..+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555443
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=2.2e-05 Score=63.96 Aligned_cols=132 Identities=14% Similarity=-0.009 Sum_probs=82.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hh
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGV-EPDA----ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IE 471 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 471 (580)
++..+...+...|++++|+..+++..+... .++. .++..+...+...|++++|...++++++.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344555556666666666666666554210 0111 35566666777777777777777775542211111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 472 HYACYVDLLGKSGKIEDACKVVSTMP----MKP----STRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
.+..+...+...|++++|.+.+++.. ... ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777777888888877776651 011 13456777888888999999999998887654
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=1.3e-05 Score=63.51 Aligned_cols=112 Identities=13% Similarity=-0.064 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 041384 401 SWTTLISGYGFHGYGEEALQLFLEMQESGVEPD--------A-----ITVLAILSACNHAGLVKEAETLFNNVMKEKKIA 467 (580)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (580)
.+......+...|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..++++++-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 4566777888999999999999999985 454 1 25555666666666666666666664431
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 468 LAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS-TRIL----SSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
|++. +..|+ ...| .....++...|++++|+..|++++++.|.+..+...
T Consensus 87 -------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 87 -------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp -------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred -------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 2111 23564 4567 888899999999999999999999999988875544
Q ss_pred HH
Q 041384 542 LS 543 (580)
Q Consensus 542 l~ 543 (580)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=2.7e-05 Score=56.13 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=56.3
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 041384 471 EHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE 548 (580)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (580)
..+..+...+...|++++|+..+++. . .+.+...+..+...+...|++++|+..++++.+.+|.++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34555566666666666666666655 1 233556677777788888888888888888888888888888888877765
Q ss_pred cC
Q 041384 549 SG 550 (580)
Q Consensus 549 ~g 550 (580)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 44
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=0.00023 Score=70.89 Aligned_cols=167 Identities=5% Similarity=-0.086 Sum_probs=129.8
Q ss_pred HHHHHHHHhcCCCC---CcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC-
Q 041384 384 ITSSHQIFNEMAAR---DFVSWTTLISGYGFHGY----------GEEALQLFLEMQESGVEP-DAITVLAILSACNHAG- 448 (580)
Q Consensus 384 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~- 448 (580)
-++|.+.++++... +...|+.-...+...++ ++++++.++++.+. .| +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 45667777766652 33456655555555555 89999999999885 45 6678888777888888
Q ss_pred -CHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 041384 449 -LVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG-KIEDACKVVSTM-PMKP-STRILSSLVSACRIH--------- 515 (580)
Q Consensus 449 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 515 (580)
++++++..++++++. .+-+...|+.-...+.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999998763 3445777887777788888 899999999888 3444 778888887777663
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 041384 516 -----GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLG 554 (580)
Q Consensus 516 -----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 554 (580)
+.++++++.++++...+|.+..+|..+.+.+.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=2.7e-05 Score=75.88 Aligned_cols=114 Identities=6% Similarity=-0.053 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI 514 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 514 (580)
..+..+...+.+.|++++|...|+++++.....++.. -+...+ .. +.....|..+..+|.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~-~~----~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKA-SE----SFLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHH-HH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHH-HH----HHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777655322221100 000000 00 0124678889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..|+++.+...
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999988654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=7.3e-06 Score=64.88 Aligned_cols=85 Identities=7% Similarity=-0.052 Sum_probs=52.2
Q ss_pred cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 483 SGKIEDACKVVSTM-PM-KPSTRILSSLVSACRIHGR----------LEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 483 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
.+.+++|++.+++. .. +.+...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 33444555544444 12 2244455555555554443 457777777777777777777777777777664
Q ss_pred -----------ChHHHHHHHHHHHhCCC
Q 041384 551 -----------NWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 551 -----------~~~~A~~~~~~~~~~~~ 567 (580)
++++|++.|++.++..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 67777777777766543
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.3e-05 Score=74.64 Aligned_cols=117 Identities=13% Similarity=-0.008 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACR 513 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 513 (580)
...+..+...+.+.|++++|...|+++++. .|+.. .+...|+.+++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 456777778888899999999999987652 23321 1234445555544332 247888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 514 IHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 514 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+.|++++|+..++++++.+|.+..++..++.+|...|++++|...|++..+...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999766543
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=2.7e-05 Score=73.28 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041384 434 AITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKP-STRILSSLVSAC 512 (580)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 512 (580)
...+..+...+.+.|++++|+..|+++++.....+ .....+++.. ..| +...|..+...|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------AAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------HHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------cccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 34566777778888888888888888665210000 0001111110 122 456888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|++.+++..+...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999887653
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.3e-05 Score=57.01 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
+...+..+...+...|++++|+..++++.+..|.++.++..++.++...|++++|++.+++..+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45678888999999999999999999999999999999999999999999999999999999876543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00018 Score=56.72 Aligned_cols=90 Identities=10% Similarity=-0.103 Sum_probs=56.3
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh---
Q 041384 476 YVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRI----HGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSE--- 548 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 548 (580)
|...|...+.+++|.+.|++....-++.....|...|.. .+++++|...++++.+. .++.....|+..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444555555555554323455555566666655 56777777777777665 456667777777777
Q ss_pred -cCChHHHHHHHHHHHhCCC
Q 041384 549 -SGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 549 -~g~~~~A~~~~~~~~~~~~ 567 (580)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6777777777777776654
No 202
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=6.8e-05 Score=73.32 Aligned_cols=93 Identities=15% Similarity=0.019 Sum_probs=83.5
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 475 CYVDLLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
.+...+.+.|++++|++.+++. ...| +...|..+..+|.+.|++++|+..++++.+.+|.++.++..++.+|...|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455677899999999999988 3344 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 041384 553 LGAEEVWRVMRAKGL 567 (580)
Q Consensus 553 ~~A~~~~~~~~~~~~ 567 (580)
++|.+.+++..+...
T Consensus 91 ~eA~~~~~~al~~~p 105 (477)
T 1wao_1 91 RAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999988654
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.00012 Score=52.59 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+...+..+...+...|++++|+..++++.+..|.++..+..++.++...|++++|.+.+++..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3567788889999999999999999999999999999999999999999999999999999887653
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=0.00092 Score=66.61 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=123.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHHHHhhCCCCChhHHHHHHHHh
Q 041384 412 HGYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGL----------VKEAETLFNNVMKEKKIALAIEHYACYVDLL 480 (580)
Q Consensus 412 ~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (580)
....++|++.++++... .|+. ..|+.--.++...|+ +++++..++.+++ ..+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 33557889999999985 5654 556655555656666 8999999999876 3345567788777888
Q ss_pred hhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc------
Q 041384 481 GKSG--KIEDACKVVSTM-P-MKPSTRILSSLVSACRIHG-RLEVAEMLAHQLIEAEPENAANYTLLSMVCSES------ 549 (580)
Q Consensus 481 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 549 (580)
.+.| +++++++.++++ . .+.+...|+.-...+.+.| .++++++.++++.+.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 2 4458889999888888999 899999999999999999999999999998774
Q ss_pred --------CChHHHHHHHHHHHhCCCc
Q 041384 550 --------GNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 550 --------g~~~~A~~~~~~~~~~~~~ 568 (580)
+.++++.+.++++....+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC
Confidence 6679999999988775543
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.0002 Score=69.59 Aligned_cols=125 Identities=14% Similarity=-0.027 Sum_probs=86.0
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhh----C--CCCChhHHH
Q 041384 408 GYGFHGYGEEALQLFLEMQES---GVEP---DA-ITVLAILSACNHAGLVKEAETLFNNVMKEK----K--IALAIEHYA 474 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~---g~~p---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~ 474 (580)
.+...|++++|+.++++..+. -+.| +. .+++.|..+|...|++++|..++++++.-. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766543 1222 22 567788888888888888888888765421 1 112256688
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC------CC---CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 475 CYVDLLGKSGKIEDACKVVSTMP------MK---PST-RILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~------~~---p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
.|...|...|++++|+.++++.. .- |+. .+.+.+..++...+.+++|+.++.++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999998888887761 22 333 244566667778889999999999987643
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00033 Score=51.26 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 476 YVDLLGKSGKIEDACKVVSTM-PMKP-STR-ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
....+.+.|++++|+..+++. ...| +.. .+..+...+...|++++|+..++++.+.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999999887 2334 566 78888888999999999999999999999988886632 455
Q ss_pred HHHHHHHHHH
Q 041384 553 LGAEEVWRVM 562 (580)
Q Consensus 553 ~~A~~~~~~~ 562 (580)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666665543
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.51 E-value=0.00056 Score=51.73 Aligned_cols=65 Identities=8% Similarity=-0.097 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTM-P-MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPE 534 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 534 (580)
...+..+...|...|++++|+..|++. . .+.+...|..+...+...|++++|...++++.+..|.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 444555555555666666666655554 1 2234556667777777777777777777777776653
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.51 E-value=0.002 Score=50.59 Aligned_cols=112 Identities=9% Similarity=-0.112 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhh----cCChHH
Q 041384 413 GYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGK----SGKIED 488 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 488 (580)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+ . -+......|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 44444 66777777888899999998665 3 355667778888877 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 041384 489 ACKVVSTMPMKPSTRILSSLVSACRI----HGRLEVAEMLAHQLIEAEP 533 (580)
Q Consensus 489 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 533 (580)
|.++|++....-++.....|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988545677888889888988 8899999999999988764
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.50 E-value=1.3e-05 Score=74.32 Aligned_cols=238 Identities=10% Similarity=0.101 Sum_probs=163.8
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhc
Q 041384 62 DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141 (580)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 141 (580)
.+.+|..|..+..+.+++.+|++-|-+ ..|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 456788899999999999999876654 45788899999999999999999998887766533 44555678889999
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCC------------------------CCCee
Q 041384 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMV------------------------IRNEV 197 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~ 197 (580)
.+++.+-++++. .|+..-.....+-|...|.++.|.-+|..+. ..++.
T Consensus 129 ~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 129 TNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp SCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888776555432 3555555566677777777777777766551 23778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 198 SWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYC 277 (580)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (580)
+|..+-.+|...+.+.-|.-+--.+.-. || ....++..|...|.+++-..+++.-+.. -......|+.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 9999999999999998886665554422 21 2233566688889999888887766521 1345667777887888
Q ss_pred HcCCCHHHHHHHHh----hCCCC-------ChhhHHHHHHHHHhCCChhHHHH
Q 041384 278 ECTEALHPARIIFE----RTKVK-------DVVIWSSIIRGYSQSGDLSEAMK 319 (580)
Q Consensus 278 ~~~~~~~~a~~~~~----~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~ 319 (580)
+-.. +...+.++ ++.-| ....|.-++-.|++-.+++.|..
T Consensus 275 KY~P--eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KFKP--QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSCT--THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hcCH--HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7542 22222222 22222 34567777777777777776643
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.00018 Score=56.97 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 041384 487 EDACKVVSTM-PMKP-STRILSSLVSACRIH-----------GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWL 553 (580)
Q Consensus 487 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 553 (580)
++|+..|++. .+.| +...|..+..+|.+. |++++|+..|+++++++|++......+- ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 4555555554 2333 445566666666554 5899999999999999999876433332 234
Q ss_pred HHHHHHHHHHhCCC
Q 041384 554 GAEEVWRVMRAKGL 567 (580)
Q Consensus 554 ~A~~~~~~~~~~~~ 567 (580)
+|.++.-.+...+.
T Consensus 136 ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 136 KAPQLHAEAYKQGL 149 (158)
T ss_dssp THHHHHHHHHHSSS
T ss_pred hCHhccCccccccc
Confidence 56666655555443
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.41 E-value=0.022 Score=42.68 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=103.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHH
Q 041384 409 YGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED 488 (580)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 488 (580)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+=+ ..|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh----hcCc----------HhhhcHHH
Confidence 34567888888888888763 4566677777766677777777777777322 2222 23444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 041384 489 ACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLS 568 (580)
Q Consensus 489 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (580)
...-+-.+ ..+...++..+..+..+|.-++-..++..+....++++....-++.+|.+.|+..+|.+++.++=+.|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 2355566777888899999999999999987788899999999999999999999999999999998875
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.41 E-value=0.00019 Score=52.62 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAA-NYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
...+...|++++|+..++++.+.+|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455556666666666666666666665 66666666666666666666666655543
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.00093 Score=48.98 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 041384 398 DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEP-DAITVLAILSACNHAGLVKEAETLFNNVMK 462 (580)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (580)
+...+..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445666666677777777777777777664 33 445666677777777777777777776554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.22 E-value=0.00058 Score=65.14 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHhCC------CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hHHHHHHH
Q 041384 483 SGKIEDACKVVSTMP------MK---PS-TRILSSLVSACRIHGRLEVAEMLAHQLIEA-----EPENA---ANYTLLSM 544 (580)
Q Consensus 483 ~g~~~~A~~~~~~~~------~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~ 544 (580)
.|++++|+.++++.. .. |+ ..+++.|..+|...|++++|+.+++++++. +|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666655440 12 22 246788888899999999999999888753 34444 45888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 041384 545 VCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~ 564 (580)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988765
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.21 E-value=3e-05 Score=71.98 Aligned_cols=237 Identities=9% Similarity=0.098 Sum_probs=153.0
Q ss_pred chHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 164 SVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243 (580)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (580)
...+|..|..+..+.+++.+|+..|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 456788888888888888887776643 3455677888888888888888888887666553333 333467778888
Q ss_pred CCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhCC------------------------CCChh
Q 041384 244 LRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTEALHPARIIFERTK------------------------VKDVV 299 (580)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~ 299 (580)
.++..+-++++. .|+..-...+.+-|...|. ++.|+-+|..+. ..++.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~l-YeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM-YDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCC-STTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccC-HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 887766544432 3455455556666666666 666666665543 13667
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 041384 300 IWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYS 379 (580)
Q Consensus 300 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 379 (580)
+|-.+-.+|...+++.-|.-.--.+.- .|| ....++..|...|.+++-+.+++.-.... .....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 888888888888887766544333321 111 12334556777788888777777665321 346677777777776
Q ss_pred hcCCHHHHHHHHhcCCC----C-------CcchHHHHHHHHHhcCChHHHH
Q 041384 380 KCGSITSSHQIFNEMAA----R-------DFVSWTTLISGYGFHGYGEEAL 419 (580)
Q Consensus 380 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 419 (580)
+- ++++..+.++..-. | ....|.-++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 64 45555555544332 2 4567888888888888887665
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.18 E-value=0.012 Score=53.87 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 501 STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
++.++..+...+...|++++|...++++.+++| +...|..++.++.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444444444444444555555555555555553 3344445555555555555555555554443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.14 E-value=0.006 Score=55.73 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=102.1
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cC--CHHHH
Q 041384 385 TSSHQIFNEMAARDFVSWTTLISGYG--FHG---YGEEALQLFLEMQESGVEPDA-ITVLAILSACNH---AG--LVKEA 453 (580)
Q Consensus 385 ~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~---~~--~~~~a 453 (580)
.+....... ...+...|...+.+.. ..+ ...+|..+|++..+. .|+- ..+..+..++.. .+ .....
T Consensus 181 ~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 344343333 3347778888876653 333 457899999999995 6754 566655555431 11 11111
Q ss_pred H---HHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 454 E---TLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 454 ~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
. ..+.........+.+..++..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++.
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 122221111233566778888887788889999999999998 356888888888999999999999999999999
Q ss_pred hcCCCCch
Q 041384 530 EAEPENAA 537 (580)
Q Consensus 530 ~~~~~~~~ 537 (580)
.++|..+.
T Consensus 338 rL~P~~~t 345 (372)
T 3ly7_A 338 NLRPGANT 345 (372)
T ss_dssp HHSCSHHH
T ss_pred hcCCCcCh
Confidence 99997754
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0011 Score=63.31 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=62.3
Q ss_pred HHhhhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hHH
Q 041384 478 DLLGKSGKIEDACKVVSTMP------MKPS----TRILSSLVSACRIHGRLEVAEMLAHQLIEA-----EPENA---ANY 539 (580)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~ 539 (580)
..+.+.|++++|+.++++.. ..|+ ..+++.++.+|...|++++|+.+++++++. +|.++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456667777777666541 1222 246788888888889999998888888753 34444 448
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 540 TLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
+.|+.+|...|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8889999999999999999888755
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.07 E-value=0.0027 Score=55.48 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=66.0
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc-CChHH
Q 041384 486 IEDACKVVSTM-PMKPS---TRILSSLVSACRI-----HGRLEVAEMLAHQLIEAEPE-NAANYTLLSMVCSES-GNWLG 554 (580)
Q Consensus 486 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 554 (580)
...|...+++. .+.|+ ...|..+...|.+ -|+.++|.+.|+++++++|+ +...+..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 34555 4567777777777 48999999999999999996 488899999988884 88999
Q ss_pred HHHHHHHHHhCCCccCCce
Q 041384 555 AEEVWRVMRAKGLSKSYGF 573 (580)
Q Consensus 555 A~~~~~~~~~~~~~~~~~~ 573 (580)
|.+++++.+...+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999888777655653
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0019 Score=50.46 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHH
Q 041384 448 GLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSG---KIEDACKVVSTMP-MK-P--STRILSSLVSACRIHGRLEV 520 (580)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~ 520 (580)
.....+.+.|.+..+ .+ +++..+...+..++++.+ +.++++.++++.- .. | +...+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345666777776443 22 367777777888888877 5668888888772 22 4 34556667777888889999
Q ss_pred HHHHHHHHHhcCCCCchHHHH
Q 041384 521 AEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 521 A~~~~~~~~~~~~~~~~~~~~ 541 (580)
|.+.++.+++.+|.|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999888888775443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.0049 Score=58.79 Aligned_cols=94 Identities=9% Similarity=-0.101 Sum_probs=65.7
Q ss_pred ccCCHHHHHHHHHHHHHhh--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 041384 446 HAGLVKEAETLFNNVMKEK--KIALA----IEHYACYVDLLGKSGKIEDACKVVSTMP---------MKPST-RILSSLV 509 (580)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 509 (580)
..|++++|+.++++.++.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567777777777765532 12222 4567778888888888888887777651 22333 4688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCchHH
Q 041384 510 SACRIHGRLEVAEMLAHQLIEA-----EPENAANY 539 (580)
Q Consensus 510 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~ 539 (580)
..|...|++++|+.+++++++. +|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999998763 57776643
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.007 Score=57.80 Aligned_cols=98 Identities=9% Similarity=0.022 Sum_probs=64.9
Q ss_pred HHhccCCHHHHHHHHHHHHHhh--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCH-HHHH
Q 041384 443 ACNHAGLVKEAETLFNNVMKEK--KIALA----IEHYACYVDLLGKSGKIEDACKVVSTMP---------MKPST-RILS 506 (580)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~ 506 (580)
.+.+.|++++|+.++++.++.. -+.|+ ..+++.++..|...|++++|+.++++.. ..|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777655421 11222 4466677777777777777777776551 22332 4678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQLIE-----AEPENAANYT 540 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 540 (580)
.|...|...|++++|+.+++++.+ .+|+++.+-.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888999999999999999998876 3577776544
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.029 Score=59.15 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=114.4
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 041384 306 RGYSQSGDLSEAMK-LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGSI 384 (580)
Q Consensus 306 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 384 (580)
......++++.|.+ ++.. .|+......++..+.+.|..+.|.++.+.- ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33446778888766 4422 121223366677777788888877665321 1113345677999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 041384 385 TSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEK 464 (580)
Q Consensus 385 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (580)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.... .
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~ 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET-T 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-c
Confidence 99999887664 557899999999999999999999988754 33444445556666665555544322 2
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHH
Q 041384 465 KIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN---AANYTL 541 (580)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 541 (580)
|. ++.-..+|.+.|++++|++++.+ .+++++|..+.+. .+|.. +.+...
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~~~i~~~~~~ 788 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGDNEVNDIVTK 788 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCChHHHHHHHHH
Confidence 21 23344455667777777766554 4566666665543 23322 233444
Q ss_pred HHHHHHhcCChHH
Q 041384 542 LSMVCSESGNWLG 554 (580)
Q Consensus 542 l~~~~~~~g~~~~ 554 (580)
+...+...|+.+.
T Consensus 789 ~~~~L~~~~~~~~ 801 (814)
T 3mkq_A 789 WKENLILNGKNTV 801 (814)
T ss_dssp HHHHHHTTTCHHH
T ss_pred HHHHHHhccchhH
Confidence 4455555665433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.013 Score=42.99 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 041384 469 AIEHYACYVDLLGKSGKIEDACKVVSTMP---------MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539 (580)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 539 (580)
+..-...+...+.+.|++..|...|+... ..+....+..+..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44455678888999999999999988762 113456788999999999999999999999999999998876
Q ss_pred HHHH
Q 041384 540 TLLS 543 (580)
Q Consensus 540 ~~l~ 543 (580)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.021 Score=40.79 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHhhhcCC---hHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 041384 468 LAIEHYACYVDLLGKSGK---IEDACKVVSTM-PMK-PSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPEN 535 (580)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 535 (580)
.+...+..+..++...++ .++|..++++. ... -++..+..+...+.+.|++++|+..|+++.+.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455566666666654443 67777777776 233 466777788888888899999999999998888873
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.46 E-value=0.015 Score=45.40 Aligned_cols=66 Identities=11% Similarity=-0.041 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 500 PSTRILSSLVSACRIHG---RLEVAEMLAHQLIEAE-P-ENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
++..+...+..++++.+ +.++++.+++...+.+ | .+...+..|+-+|++.|++++|+++++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44555555555555554 3445555555555554 3 24455555555555555555555555555443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.027 Score=41.32 Aligned_cols=69 Identities=7% Similarity=0.101 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-----CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 041384 433 DAITVLAILSACNHAGLVKEAETLFNNVMKEKK-----IALAIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPS 501 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 501 (580)
+..-+..+...+...|+++.|...++.+++... -.+...++..|..+|.+.|++++|..+++++ ...|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 344455666777777778888877777665331 1233556777777777788888877777776 24453
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.38 E-value=0.93 Score=45.21 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHH
Q 041384 414 YGEEALQLFLEMQESGVEPDAIT----VLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDA 489 (580)
Q Consensus 414 ~~~~a~~~~~~~~~~g~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (580)
+.+.|...+......+ ..+... ...+.......+...++...+..... ..++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765432 222222 22233333344423445555554322 122322233344444466777777
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041384 490 CKVVSTMPMKP--STRILSSLVSACRIHGRLEVAEMLAHQLIE 530 (580)
Q Consensus 490 ~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 530 (580)
...|+.+...+ ...-.-=+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777775332 222223344556667777777777777764
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.046 Score=57.64 Aligned_cols=130 Identities=14% Similarity=0.014 Sum_probs=70.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 451 (580)
..++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.+. ..+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence 55666666677777776655321 1112234456777777766432 235566777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041384 452 EAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQL 528 (580)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 528 (580)
.|.+.|.+ +++ |..+...|...|+.+...++-+......+ ++.....|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~-~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTN-AHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHH-HTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHH-ccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776 221 34455555556665554444333221111 222333455566666666666553
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.37 Score=38.65 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=52.4
Q ss_pred hHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 041384 378 YSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLF 457 (580)
Q Consensus 378 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (580)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665544 3445666666666666666666666665443 222333344455555444433
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC
Q 041384 458 NNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
+.... .| -++.-...+.-.|+++++.++|.+..
T Consensus 84 ~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 33211 11 13333444555666666666666554
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.05 E-value=0.31 Score=36.61 Aligned_cols=68 Identities=12% Similarity=-0.043 Sum_probs=53.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCC
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLN 365 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (580)
+....+..+..+..+|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 455566677888888998888888888644 33788888888899999999999999998888888754
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.56 Score=37.65 Aligned_cols=130 Identities=13% Similarity=0.062 Sum_probs=88.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCC
Q 041384 406 ISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGK 485 (580)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (580)
.......|+++.|.++.+.+ .+...|..|.......|+++-|...|.+ .+ -+..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~-~~---------D~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT-QH---------SFDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH-TT---------CHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH-hC---------CHHHHHHHHHHhCC
Confidence 34456788999999887664 4678899999999999999999999988 32 15566667777888
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
.+.-.++-+.....- -++.....+.-.|+++++.+++.+.-+ +..-+-.....|-.+.|.++.+++
T Consensus 76 ~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 777665544432121 234444556678999999998876432 222222222357778888888776
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.43 E-value=0.06 Score=41.41 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHHHHhhCCCCChh-HHHHHHHH------hhhcCChHHHHHHHHhCC--
Q 041384 433 DAITVLAILSACNHAGLV------KEAETLFNNVMKEKKIALAIE-HYACYVDL------LGKSGKIEDACKVVSTMP-- 497 (580)
Q Consensus 433 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 497 (580)
|..++-..+....+.|++ ++.+++|++++. .++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667888888877777888 888888888764 4555521 12222211 223467777777777661
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 498 -MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 498 -~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
.+- ...|.....--.++|+.+.|..++.+++...|.+...+...+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 112 5556666666667777777777777777777766665544443
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.26 E-value=3.4 Score=43.04 Aligned_cols=282 Identities=9% Similarity=-0.040 Sum_probs=139.6
Q ss_pred HHHcCCCHHHHHHHHhhCCC----CChh--hHHHHHHHHHhCCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 041384 276 YCECTEALHPARIIFERTKV----KDVV--IWSSIIRGYSQSGDLSEAMKLFSRMRLERI--E-----PNSVTLLAILSS 342 (580)
Q Consensus 276 ~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 342 (580)
....|+ .+.+..+++.... .+.. .=..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 384 lIh~g~-~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 384 VIHKGN-LLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHTSSC-TTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhccCc-hHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 334555 5666666665543 1222 222233345566666677777777654321 1 111112222223
Q ss_pred hhccCC-hHHHHHHHHHHHHhCCCCchh--HHHHHHHHhHhcCCHHHHHHHHhcCCCC-CcchHHHHH--HHHHhcCChH
Q 041384 343 CTRQSF-LSHGLGVHCYIMKAGLNFDVS--IGNALMNMYSKCGSITSSHQIFNEMAAR-DFVSWTTLI--SGYGFHGYGE 416 (580)
Q Consensus 343 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~ 416 (580)
.+..|. -+++.+.+..+....- +... .--++...+.-.|+.+....++..+.+. +......+. -++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2345555555554321 1111 1122333455667777777777655432 222333333 3444678888
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHH---HHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 041384 417 EALQLFLEMQESGVEPDA-ITVL---AILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKV 492 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~-~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (580)
.+..+++.+... .++ .-|. .+.-+|+..|+.....+++..+.. ....++.-...+.-++...|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888887763 333 2232 344567788888777778887554 2223333333333444456666666666
Q ss_pred HHhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCchH-HHHHHHHHHhcCChHH----HHHHHHHHHh
Q 041384 493 VSTMPMK--PSTRILSSLVSACRIHGRL-EVAEMLAHQLIEAEPENAAN-YTLLSMVCSESGNWLG----AEEVWRVMRA 564 (580)
Q Consensus 493 ~~~~~~~--p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~----A~~~~~~~~~ 564 (580)
++.+... |..+.-..+.-+....|.. .++...+..+.. ++++... -...+-+..-.|..+. ..++++++.+
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 6655323 3333333344444444443 577778888764 3332222 1222333444454443 6666666654
Q ss_pred C
Q 041384 565 K 565 (580)
Q Consensus 565 ~ 565 (580)
.
T Consensus 696 ~ 696 (963)
T 4ady_A 696 V 696 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.24 E-value=0.052 Score=40.70 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=66.0
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHh
Q 041384 442 SACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIED---ACKVVSTMP-MK-P--STRILSSLVSACRI 514 (580)
Q Consensus 442 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~ 514 (580)
..-........+.+-|.+... .+. ++..+--.+..++.+..+..+ ++.+++++- .. | .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 333344455566666666443 233 666677777788888776655 888888773 22 3 22345567777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHH
Q 041384 515 HGRLEVAEMLAHQLIEAEPENAANYTL 541 (580)
Q Consensus 515 ~~~~~~A~~~~~~~~~~~~~~~~~~~~ 541 (580)
.|++++|.+.++.+++..|.|..+...
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999988875443
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.14 E-value=0.039 Score=48.28 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCC--ChhHHHHHHHHhhhc-C
Q 041384 416 EEALQLFLEMQESGVEPD---AITVLAILSACNHA-----GLVKEAETLFNNVMKEKKIAL--AIEHYACYVDLLGKS-G 484 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g 484 (580)
..|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++.++ +.| +..++..+.+.+++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcC
Confidence 344555555555 2444 23455555555552 555555555555444 222 133344444444442 4
Q ss_pred ChHHHHHHHHhC
Q 041384 485 KIEDACKVVSTM 496 (580)
Q Consensus 485 ~~~~A~~~~~~~ 496 (580)
+.+++.+.+++.
T Consensus 255 d~~~a~~~L~kA 266 (301)
T 3u64_A 255 NRAGFDEALDRA 266 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.09 E-value=0.27 Score=36.87 Aligned_cols=65 Identities=11% Similarity=-0.074 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041384 500 PSTRILSSLVSACRIHGRLEV---AEMLAHQLIEAE-P-ENAANYTLLSMVCSESGNWLGAEEVWRVMRA 564 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (580)
|+..+-..+.+++.+.++... ++.+++.+.+.+ | .+......|+-++++.|+|++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444555555555444333 555555555544 2 2444455555555555555555555555544
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.09 E-value=0.17 Score=39.01 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 516 GRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 516 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+|.++|.++|+.++.....-+.+|...+..-.++|+...|++++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444444444444443332233344444444444444444444444444433
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.5 Score=48.08 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 509 VSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 509 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
..-|...|+++-|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455677899999999999999999999999999999999999999999988766
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.79 E-value=0.42 Score=36.52 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 041384 467 ALAIEHYACYVDLLGKSGKI---EDACKVVSTM-PMKP--STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANY 539 (580)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 539 (580)
.|+..+--.+..++.+..+. .+++.+++++ ...| .....-.|.-++.+.|++++|.+..+.+++..|.|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56666666666666666643 4566666665 1223 223444566667777777777777777777777776643
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.25 E-value=6.1 Score=41.22 Aligned_cols=250 Identities=12% Similarity=-0.001 Sum_probs=110.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhccCChHHHHHHHHHHHHhCC-------CCchhHHHHH--H
Q 041384 307 GYSQSGDLSEAMKLFSRMRLERIEPNSVTLL--AILSSCTRQSFLSHGLGVHCYIMKAGL-------NFDVSIGNAL--M 375 (580)
Q Consensus 307 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l--~ 375 (580)
+....|+.++++.++......+...+..+-. .+.-+....|..+.+..++.......- .+....-.++ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455666666666666544321122333222 222334455555556666665554321 0111111222 2
Q ss_pred HHhHhcCCHHHHHHHHhcC-CCCCcch--HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHhccC
Q 041384 376 NMYSKCGSITSSHQIFNEM-AARDFVS--WT--TLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAIL--SACNHAG 448 (580)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~~ 448 (580)
-+|.-.++- ++.+.+..+ ...+... .. .|...+.-.|+.+....+++.+.+. .+......+. -++...|
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 222333443 333333333 2333221 11 1222334456666666666665552 2222222222 2344567
Q ss_pred CHHHHHHHHHHHHHhhCCCCChhHHH--HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHH
Q 041384 449 LVKEAETLFNNVMKEKKIALAIEHYA--CYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLV--SACRIHGRLEVAEML 524 (580)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~A~~~ 524 (580)
+.+.+..+.+.+.. ...|....-. .+.-+|+-.|+.....+++..+...++..+-...+ -++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 77777777666332 2223322222 33445667777666666776664333333332222 233345555555555
Q ss_pred HHHHHhcCCCCchHHHH--HHHHHHhcCCh-HHHHHHHHHHHh
Q 041384 525 AHQLIEAEPENAANYTL--LSMVCSESGNW-LGAEEVWRVMRA 564 (580)
Q Consensus 525 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~~ 564 (580)
++.+.+-. ++.+-.. ++.+....|+- .+|..++..+..
T Consensus 617 v~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 55444433 3333332 22233333332 567777777754
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.17 E-value=0.28 Score=36.94 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCCCChhHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 041384 465 KIALAIEHYACYVDLLGKSGKI---EDACKVVSTM-PMKP--STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAAN 538 (580)
Q Consensus 465 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 538 (580)
+-.|+..+--.+..++.+..+. .+++.+++++ ...| ....+-.|.-++.+.|++++|.+..+.+++..|.|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3344555544555555555443 3455555554 1223 22344455556666666666666666666666666553
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.86 E-value=0.16 Score=47.67 Aligned_cols=69 Identities=16% Similarity=0.061 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCCc
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRA-----KGLSKSYG 572 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 572 (580)
....++.++...|++++|+..+..+...+|-+...+..++.+|.+.|+..+|.+.|+++.+ .|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445666777888888888888888888888888888888888888888888888877644 37766654
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.27 E-value=0.49 Score=37.27 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-----------------------CCChhHHHHHHHHhhhcCChHHHHHH
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEKKI-----------------------ALAIEHYACYVDLLGKSGKIEDACKV 492 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (580)
++..+.+++...+++..|...|+++++.... ..+.+.-..+..+|.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3444555556666666666666654432221 11223334456666666777777766
Q ss_pred HHhCC
Q 041384 493 VSTMP 497 (580)
Q Consensus 493 ~~~~~ 497 (580)
++.++
T Consensus 145 Le~Ip 149 (167)
T 3ffl_A 145 LDGIP 149 (167)
T ss_dssp HHTSC
T ss_pred HhcCC
Confidence 66664
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.06 E-value=6.3 Score=35.15 Aligned_cols=170 Identities=8% Similarity=0.010 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHh
Q 041384 64 VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEM----FREMYLCGFVLKAELLAGIISLC 139 (580)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~ 139 (580)
..|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566677778889999999987654 24556677887666554 55566678999998888888877
Q ss_pred hccCCc-----HHHHHHHHHHHHhCC-CCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhc---C
Q 041384 140 SQIGEL-----ELGRQIHALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDS---Q 210 (580)
Q Consensus 140 ~~~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~ 210 (580)
.....- +-..+...+-.+.|. ..-+......+...|.+.|++.+|...|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 664321 223334444444442 2347788899999999999999999887532211334444444333333 3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 211 NYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 211 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (580)
...++- ...-..+ --|...++...|..+++...+
T Consensus 183 ~~~e~d--------------lf~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVA--------------EFFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHH--------------HHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHH--------------HHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 332221 1111122 234456788888887776543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.90 E-value=0.85 Score=35.95 Aligned_cols=122 Identities=11% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCCh-------hHHHHHHHHhhhcCChHHHHHHHHhCC--
Q 041384 429 GVEPDA--ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAI-------EHYACYVDLLGKSGKIEDACKVVSTMP-- 497 (580)
Q Consensus 429 g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 497 (580)
|+.|.. .++..-+..+...|.++.|+-+...++.-.+..|+. .++..+.+++...|++..|...|++.-
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 445533 334444566677777887777777644433333332 244556666667777777776666530
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 041384 498 ---MKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVM 562 (580)
Q Consensus 498 ---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (580)
+.........+. ....... -.. .+.+..+-..++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 010100000000 0000000 000 1223456677999999999999999998854
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.69 E-value=6.2 Score=37.67 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=127.6
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCCchhHHHHHHH----HhHhc
Q 041384 312 GDLSEAMKLFSRMRLE-----RIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNFDVSIGNALMN----MYSKC 381 (580)
Q Consensus 312 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~----~~~~~ 381 (580)
|+++.|++.+..+.+. ...........++..|...++++...+.+..+.+ +|..+. ....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 7789999888776543 2455677788899999999999999888776665 333222 2233333 22233
Q ss_pred CCH--HHHHHHHhcCCC---CCc-------chHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHH
Q 041384 382 GSI--TSSHQIFNEMAA---RDF-------VSWTTLISGYGFHGYGEEALQLFLEMQES--GVEPDA---ITVLAILSAC 444 (580)
Q Consensus 382 g~~--~~A~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~~---~~~~~l~~~~ 444 (580)
... +.-..+.+.+.. .-. .....|...+...|++.+|..++..+... |..+.. ..+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332 233344444433 111 12356788899999999999999998643 222221 4566677889
Q ss_pred hccCCHHHHHHHHHHHHHh-hCC--CCC--hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041384 445 NHAGLVKEAETLFNNVMKE-KKI--ALA--IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLE 519 (580)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 519 (580)
...+++..|..++.++... ... +|+ ...+...+..+...+++.+|.+.|.++ ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 9999999999999985321 112 222 345667777888889999888776554 34444555555
Q ss_pred HHHHHHHH
Q 041384 520 VAEMLAHQ 527 (580)
Q Consensus 520 ~A~~~~~~ 527 (580)
....++..
T Consensus 256 ~~~~~L~~ 263 (445)
T 4b4t_P 256 KWKPVLSH 263 (445)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.32 E-value=1.5 Score=33.06 Aligned_cols=68 Identities=6% Similarity=0.041 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 499 KPSTRILSSLVSACRIHGRL---EVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 499 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
.|+..+-..+.+++.+..+. .+++.+++.+.+.+|. ....+..|+-++.+.|++++|+++.+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45556656666666655543 4566666666666653 45556666666777777777777776666543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.81 E-value=4.3 Score=31.05 Aligned_cols=69 Identities=6% Similarity=0.029 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 499 KPSTRILSSLVSACRIHGRL---EVAEMLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 499 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
.|+..+-..+.+++.+..+. .+++.+++.+.+..|. .......|+-++++.|+|++|+++.+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 46666666777777766543 4677777777776663 555666777777888888888887777776543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.63 E-value=1.2 Score=31.35 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 414 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++- ++. ...+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~-iK~-K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEV-VKD-KAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHH-HTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-HHH-HhcCchhhHHHHHH
Confidence 3445666677777778899999999999999999999999999998 442 23333556777654
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.60 E-value=9.3 Score=34.36 Aligned_cols=170 Identities=9% Similarity=-0.010 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHh
Q 041384 64 VISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMF----REMYLCGFVLKAELLAGIISLC 139 (580)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~ 139 (580)
..|.++..-|.+.+++++|++++-. -...+.+.|....|-++- +-+.+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4667777888999999999987654 245666777776665554 5566678999998888888888
Q ss_pred hccCCcH-HHHHHH----HHHHHhCC-CCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChh
Q 041384 140 SQIGELE-LGRQIH----ALVIVDGS-FELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYD 213 (580)
Q Consensus 140 ~~~~~~~-~a~~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (580)
.....-+ .-..+. .+-.+.|. ..-|......+...|.+.+++.+|...|-.-..+....|..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 7665422 122233 33334331 33567778888899999999999998884222222245544444443333322
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 214 TGIDLFRAMQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 214 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (580)
++ |...-..++ -|...+++..|..+++...+
T Consensus 185 e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 22 122222222 34556677777776665543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.53 E-value=2 Score=30.39 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=44.6
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 487 EDACKVVSTM---PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 487 ~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
=+..+-++.+ ..-|++....+.+++|++.+|+..|+++++-+...-.+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3444444444 467999999999999999999999999999998776555666766653
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.53 E-value=9.1 Score=34.15 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHH----HH
Q 041384 145 LELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDL----FR 220 (580)
Q Consensus 145 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~ 220 (580)
+++..+-++.-++.|.+---...|.++..=|.+.+++++|++++.. -...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 3444444444455552323344666777778888999998887633 23455667887666654 55
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCCc-hhHHHHHHHHHH----hc--CCCchhHHHHHHHHHHHcCCCHHHHHHHHhhC
Q 041384 221 AMQREGVKPTRVTLTIVLLACAELRDL-RNGKAIHGYAYC----CG--FDFDHHLSAALMHMYCECTEALHPARIIFERT 293 (580)
Q Consensus 221 ~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 293 (580)
...+.+++++......++..+..-..- ..-..+++.+++ .| ...++.....+...|.+.++ +..|+..|-..
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~-~~~A~~H~i~~ 160 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF-VYEAERYFMLG 160 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHHHTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHhC
Confidence 556678889988888888877664322 223444444443 22 22466777777777888777 77777665533
Q ss_pred CCCChhhHHHHH
Q 041384 294 KVKDVVIWSSII 305 (580)
Q Consensus 294 ~~~~~~~~~~l~ 305 (580)
...+...+..++
T Consensus 161 ~~~s~~~~a~~l 172 (312)
T 2wpv_A 161 THDSMIKYVDLL 172 (312)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 322333443333
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.23 E-value=10 Score=34.16 Aligned_cols=150 Identities=15% Similarity=0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCCC---CCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHH---
Q 041384 146 ELGRQIHALVIVDGSF---ELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLF--- 219 (580)
Q Consensus 146 ~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--- 219 (580)
++..+-++.-++.|.+ ---..++.++..=|.+.+++++|++++-. -...+.+.|+...|-++-
T Consensus 13 ~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~ll 81 (336)
T 3lpz_A 13 ERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLL 81 (336)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3334444444445422 12234566677778889999999987632 234566677776665554
Q ss_pred -HHHHHcCCCCCHHHHHHHHHHHhcCCCch-hHHHHHHHHHH----hc--CCCchhHHHHHHHHHHHcCCCHHHHHHHHh
Q 041384 220 -RAMQREGVKPTRVTLTIVLLACAELRDLR-NGKAIHGYAYC----CG--FDFDHHLSAALMHMYCECTEALHPARIIFE 291 (580)
Q Consensus 220 -~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 291 (580)
+.+.+.++++|..+...++..+.....-+ .-..+++.+++ .| ..-++.....+...|.+.++ +..|+..|-
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~-~~~Ae~H~i 160 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGE-FEAAEKHLV 160 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHH
Confidence 55566788999988888888877655322 22334444433 23 33456666677777777777 777766664
Q ss_pred hCCCCChhhHHHHHHH
Q 041384 292 RTKVKDVVIWSSIIRG 307 (580)
Q Consensus 292 ~~~~~~~~~~~~l~~~ 307 (580)
....++...+..++.-
T Consensus 161 lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 161 LGTKESPEVLARMEYE 176 (336)
T ss_dssp TSCTTHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHH
Confidence 4333333444444433
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.18 E-value=22 Score=38.78 Aligned_cols=139 Identities=6% Similarity=0.009 Sum_probs=84.9
Q ss_pred HHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCC----C---------------
Q 041384 135 IISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIR----N--------------- 195 (580)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--------------- 195 (580)
++..+...+..+.+.++... .+.+....-.+..+|...|++++|..+|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 44445555666666555443 2334444445667788899999999999876211 0
Q ss_pred -------eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCC
Q 041384 196 -------EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPT----RVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDF 264 (580)
Q Consensus 196 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (580)
..-|..++..+-+.+.++.+.++-+...+..-.-+ ...|..+.+++...+++++|...+-.+.... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 01255666777777777777777666554321111 1246677777888888888877776665433 2
Q ss_pred chhHHHHHHHHHHHcCC
Q 041384 265 DHHLSAALMHMYCECTE 281 (580)
Q Consensus 265 ~~~~~~~l~~~~~~~~~ 281 (580)
...+...++..+|..+.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34566667766666665
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.29 E-value=19 Score=35.95 Aligned_cols=339 Identities=8% Similarity=-0.055 Sum_probs=158.6
Q ss_pred CchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 041384 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACA 242 (580)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 242 (580)
.....-..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+=..|- ........++..+.
T Consensus 70 ~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~ 147 (618)
T 1qsa_A 70 PARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWR 147 (618)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHH
Confidence 3334445556666667777777776665 322333333455566667776666655555443331 22344455555555
Q ss_pred cCCCchh--HHHHHHHHHHhc-----------CCCchhH-HHHHHHHHHHcCCCHHHHHHHHhhCCCCChh---hHHHHH
Q 041384 243 ELRDLRN--GKAIHGYAYCCG-----------FDFDHHL-SAALMHMYCECTEALHPARIIFERTKVKDVV---IWSSII 305 (580)
Q Consensus 243 ~~~~~~~--a~~~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~ 305 (580)
+.|.+.. ...-+..+...| ++++... ...++..+.+ ...+....... .++.. .+...+
T Consensus 148 ~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~----p~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN----PNTVLTFARTT-GATDFTRQMAAVAF 222 (618)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC----GGGHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC----hHhHHHHHhcc-CCChhhHHHHHHHH
Confidence 5444332 222222222222 1122111 1122221111 11111221111 11111 111122
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 041384 306 RGYSQSGDLSEAMKLFSRMRLERIEPNSVTL----LAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKC 381 (580)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 381 (580)
.-+.+ .+.+.|...+....... ..+.... ..+.......+...++...+....... .+.....-.+....+.
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 23333 36788888887776543 2233222 222333344443555666666544332 3333334444445567
Q ss_pred CCHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 041384 382 GSITSSHQIFNEMAARD---FVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFN 458 (580)
Q Consensus 382 g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 458 (580)
|+++.|...|+.|.... .....-+..++...|+.++|..+|+.+... .+ .|..+.. .+.|..-.
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~------ 365 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE------ 365 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC------
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC------
Confidence 88888888888887632 223344566777788888888888887641 11 2333221 11121000
Q ss_pred HHHHhhCCCCC-hh-----HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 459 NVMKEKKIALA-IE-----HYACYVDLLGKSGKIEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 459 ~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
.......+. .. ....-+..+...|....|...|.......+......+.......|..+.++....+
T Consensus 366 --~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 366 --LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp --CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000000000 00 01123445667788888877777663233444444555555667777777655544
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.05 E-value=0.65 Score=40.02 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=39.8
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 479 LLGKSGKIEDACKVVSTM-PMKP-STRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
.+.+.|++++|++....- +..| |...-..++..+|-.|++++|..-++...+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 445677777777766544 3334 6666667777777777777777777777777776444
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.73 E-value=4.7 Score=28.30 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred cchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 041384 41 QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120 (580)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 120 (580)
... ++|.-+-+++...|. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 20 H~H-qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCH-EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCH-HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 344 888888888887764 32232333455788999999999999999999999988766 4677777777777777
Q ss_pred HHCC
Q 041384 121 YLCG 124 (580)
Q Consensus 121 ~~~~ 124 (580)
..+|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 7665
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.98 E-value=8.9 Score=33.08 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=68.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHhhhc
Q 041384 408 GYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA----IEHYACYVDLLGKS 483 (580)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 483 (580)
.+.+.|++++|++.+..-++.. +-|...-..++..+|-.|++++|.+-++...+ ..|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 3456778888888777777652 33666667778888888888888887776443 2333 2233333332
Q ss_pred CChHHHH-HHHHhCC----CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 484 GKIEDAC-KVVSTMP----MKPSTRILSSLVSAC--RIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 484 g~~~~A~-~~~~~~~----~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
+... ++|.--. ......-...++.+. ...|+.++|.++-.++.+..|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222211 111222334444444 3458888888888888877766544
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.26 E-value=8 Score=31.66 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 517 RLEVAEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
+...+..+|..+...+ ..-+..|...+..+...|++.+|.++++.-++.+-
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3455555555555433 34555555555556666666666666655544443
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.21 E-value=5.4 Score=28.02 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=63.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHHH
Q 041384 143 GELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRAM 222 (580)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 222 (580)
...++|..|-+.+...+ . ...+-.+-+..+...|++++|..+.+.+..||...|-+|.. .+.|--+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 45678888888887776 2 44444455566788999999999999999999998887765 4678778887777777
Q ss_pred HHcCCCCCHHHHH
Q 041384 223 QREGVKPTRVTLT 235 (580)
Q Consensus 223 ~~~~~~p~~~~~~ 235 (580)
...|- |....|.
T Consensus 95 a~sg~-p~~q~Fa 106 (115)
T 2uwj_G 95 GGSSD-PALADFA 106 (115)
T ss_dssp HTCSS-HHHHHHH
T ss_pred HhCCC-HHHHHHH
Confidence 76643 4444443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.80 E-value=20 Score=33.32 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCC---chhHHHHHHHHhHhc-CCHHHHHHHHhcCCC---CCcchH---
Q 041384 334 VTLLAILSSCTRQSFLSHGLGVHCYIMK-AGLNF---DVSIGNALMNMYSKC-GSITSSHQIFNEMAA---RDFVSW--- 402 (580)
Q Consensus 334 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~--- 402 (580)
.....+...|.+.|+.++..+++..... .+.-| .......+++.+... +..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888777776654 11111 233445566666553 333333333333332 122333
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCChhHH
Q 041384 403 ---TTLISGYGFHGYGEEALQLFLEMQESGVEPDA-----ITVLAILSACNHAGLVKEAETLFNNVMKEKK-IALAIEHY 473 (580)
Q Consensus 403 ---~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 473 (580)
..++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+.......+ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24677788888888888888777764112121 3355556667778888888888877544322 22333222
Q ss_pred H----HHHHHhh-hcCChHHHHHHHHhC
Q 041384 474 A----CYVDLLG-KSGKIEDACKVVSTM 496 (580)
Q Consensus 474 ~----~l~~~~~-~~g~~~~A~~~~~~~ 496 (580)
. .-+..+. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 1223344 677888887776553
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.52 E-value=5 Score=28.20 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=57.8
Q ss_pred cchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHH
Q 041384 41 QTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREM 120 (580)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 120 (580)
... ++|.-+-+++...|. ...+--.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+.++
T Consensus 21 H~H-qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYH-EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCH-HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 344 888888888887764 222322334557888999999999999999999999887664 566667777777677
Q ss_pred HHCC
Q 041384 121 YLCG 124 (580)
Q Consensus 121 ~~~~ 124 (580)
..+|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6665
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.02 E-value=3.6 Score=38.50 Aligned_cols=70 Identities=10% Similarity=0.105 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 041384 302 SSIIRGYSQSGDLSEAMKLFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMK-----AGLNFDVSIGN 372 (580)
Q Consensus 302 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 372 (580)
..++..+...|+++++...+..+.... +.+...+..+|.++...|+..+|++.|+.+.+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 346677888999999999888887664 55788999999999999999999999988765 58999877543
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.65 E-value=7.5 Score=27.37 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=63.5
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 041384 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQNYDTGIDLFRA 221 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (580)
....++|..|-+.+...+ . ...+-.+-+..+...|++++|..+.+.+..||...|-+|... +.|--+++..-+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 345678888888887776 2 444444555678889999999999999999999998877654 67777777777777
Q ss_pred HHHcCCCCCHHHHH
Q 041384 222 MQREGVKPTRVTLT 235 (580)
Q Consensus 222 m~~~~~~p~~~~~~ 235 (580)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 76654 34444443
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.54 E-value=4.1 Score=30.56 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 041384 416 EEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVD 478 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 478 (580)
-+..+-++.+....+-|++......+++|.+.+++..|.++++- ++ .+..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~-vK-~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEV-VK-DKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH-HHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-HH-HhcCCchhhHHHHHH
Confidence 34556666777778899999999999999999999999999998 54 233444666777764
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.61 E-value=10 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 041384 497 PMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSM 544 (580)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 544 (580)
..-|++....+.+++|.+.+|+..|+++++-++..-.+...+|..+++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 467999999999999999999999999999998876555666776653
No 268
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.66 E-value=38 Score=34.59 Aligned_cols=60 Identities=10% Similarity=-0.059 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 041384 469 AIEHYACYVDLLGKSGKIEDACKVVSTM-PMKPSTRILSSLVSACRIHG---------RLEVAEMLAHQL 528 (580)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~ 528 (580)
+..=|..|.....|.+++++|.+.|+.. ..+-++..+..|+..|.+.+ +.+..+.+.-++
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl 681 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKK 681 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHH
Confidence 3444666777777777777777777665 34566777777777776655 555555544444
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.03 E-value=12 Score=40.85 Aligned_cols=60 Identities=10% Similarity=-0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 504 ILSSLVSACRIHGRLEVAEMLAHQLIEAEPE-NA----ANYTLLSMVCSESGNWLGAEEVWRVMR 563 (580)
Q Consensus 504 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (580)
.|..++..+.+.|.++.+.++.+.+.+..++ +. ..|..+...+...|++++|-..+-.+-
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 4455555666666666666666665554322 21 135555666666666666665554443
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.17 E-value=15 Score=28.46 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 041384 521 AEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSK 569 (580)
Q Consensus 521 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (580)
+..+|..+...+ ..-+..|...+..+...|++.+|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677777777654 5566677778888888888888888887766665443
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.56 E-value=23 Score=29.23 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHhccCC
Q 041384 432 PDAITVLAILSACNHAGL 449 (580)
Q Consensus 432 p~~~~~~~l~~~~~~~~~ 449 (580)
++...-...+.++...+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344443444444444443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.13 E-value=27 Score=30.34 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=10.4
Q ss_pred HHHHHcCCCchHHHHhhcc
Q 041384 70 ISMYAKFSKPESAYQLFDE 88 (580)
Q Consensus 70 ~~~~~~~g~~~~A~~~~~~ 88 (580)
+...+..|+.+-+..+++.
T Consensus 43 L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 43 LHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344555666665555554
No 273
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.78 E-value=43 Score=31.85 Aligned_cols=159 Identities=8% Similarity=0.038 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHhh----ccCChHHHHHHHHHHHH------hC-C
Q 041384 297 DVVIWSSIIRGYSQSGDLSEAMKLFSRMRLE-RIEPNSVTLLAILSSCT----RQSFLSHGLGVHCYIMK------AG-L 364 (580)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~------~~-~ 364 (580)
.......++..|...|+++...+.+.-+... |..+ .....+++.+. .....+.-.. ..... .| +
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~~~~d~~~~--~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSSKSLDLNTR--ISVIETIRVVTENKI 130 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHHCTTHHHHH--HHHHHCCSSSSSCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcCCchhHHHH--HHHHHHHHHHhccch
Confidence 3455777888899999999988877766543 3222 22334443332 2232222111 11111 11 1
Q ss_pred CC---chhHHHHHHHHhHhcCCHHHHHHHHhcCCC----CC-----cchHHHHHHHHHhcCChHHHHHHHHHHHH----c
Q 041384 365 NF---DVSIGNALMNMYSKCGSITSSHQIFNEMAA----RD-----FVSWTTLISGYGFHGYGEEALQLFLEMQE----S 428 (580)
Q Consensus 365 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 428 (580)
-. .......|...|...|++.+|.+++..+.. .+ +..+..-+..|...+++.+|..++.+... .
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 11 223446678889999999999999998753 11 23566677888999999999999988742 2
Q ss_pred CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHH
Q 041384 429 GVEPDA--ITVLAILSACNHAGLVKEAETLFNN 459 (580)
Q Consensus 429 g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (580)
...|+. ..+...+..+...+++.+|.+.|.+
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222 3456666777788888888887776
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.71 E-value=20 Score=28.26 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 041384 521 AEMLAHQLIEAE--PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKG 566 (580)
Q Consensus 521 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (580)
+..+|..+...+ ..-+..|...+..+...|++.+|.++|+.-++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455554433 3344455555555555555555555555544444
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.44 E-value=24 Score=28.80 Aligned_cols=85 Identities=9% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVK 451 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 451 (580)
...+.++.+.++.+....+...+..++...-...+.++...+.. .+...+..+.. .++...-...+.++...|..
T Consensus 94 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 94 QSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 33344444444433333333333334444444444444444432 23333333332 24444444455555555442
Q ss_pred HHHHHHHHHH
Q 041384 452 EAETLFNNVM 461 (580)
Q Consensus 452 ~a~~~~~~~~ 461 (580)
.+...+..++
T Consensus 169 ~~~~~L~~~l 178 (201)
T 3ltj_A 169 RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444434
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.03 E-value=19 Score=31.62 Aligned_cols=168 Identities=7% Similarity=-0.003 Sum_probs=73.5
Q ss_pred CCCchhhHHHHHHHHHccCCCC-CCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchH
Q 041384 3 SKHFYEQTLHLYKQELHPSGLY-SNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISNSLISMYAKFSKPES 81 (580)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (580)
+..+.++..+++ . ..++. .|..-.+ .|...+..|+. +.+ +.+.+.|..++...-.+.+...+..|+.+-
T Consensus 8 ~~~~~~~v~~lL-~---~~~~~~~d~~g~t-~L~~A~~~g~~-~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 8 NTWKSKQLKSFL-S---SKDTFKADVHGHS-ASYYAIADNNV-RLV----CTLLNAGALKNLLENEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGCCHHHHHHHH-H---STTTTCCCTTSCC-HHHHHHHTTCH-HHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHH
T ss_pred HhcCHHHHHHHH-H---hCCCCccCCCCCC-HHHHHHHcCCH-HHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 345566666666 2 22332 2222333 33344445665 444 344455544443322334445566777777
Q ss_pred HHHhhccCCCC---CccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHhhccCCcHHHHHHHHHH
Q 041384 82 AYQLFDEMPYR---DTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL---LAGIISLCSQIGELELGRQIHALV 155 (580)
Q Consensus 82 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~ 155 (580)
+..+++.-..+ |..-++.|. ..+..|+.+-+.- +.+.|..++... +.+.+...+..|+.+.+ +.+
T Consensus 78 v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~L 148 (285)
T 3kea_A 78 VKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYF 148 (285)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHH
T ss_pred HHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHH
Confidence 77777654322 232333333 3344555443333 333344333221 12334444445554433 333
Q ss_pred HHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHh
Q 041384 156 IVDGSFELSVFVSTALLDLYSKCHHWLIALRVFE 189 (580)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (580)
.+.|....+...-.+.+...+..|+.+-+.-+++
T Consensus 149 l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 149 LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 3334112222122233334455566655555554
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.17 E-value=10 Score=35.89 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 436 TVLAILSACNHAGLVKEAETLFNNVMKEK-KIALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 436 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
+...+...+.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445556666666666666666643311 11112334444555555555555555555544
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.17 E-value=28 Score=32.94 Aligned_cols=61 Identities=7% Similarity=-0.086 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 041384 198 SWTAMISGCIDSQNYDTGIDLFRAMQREG--VKPTRVTLTIVLLACAELRDLRNGKAIHGYAY 258 (580)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (580)
+...+...|.+.|+++.|.+.|.++...- ..--...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55677888888888888888888887652 23334566677777777888888777765554
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.46 E-value=49 Score=28.52 Aligned_cols=181 Identities=12% Similarity=0.021 Sum_probs=88.5
Q ss_pred HHHHHHcCCCchHHHHhhccCCCCC----ccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHhhcc
Q 041384 69 LISMYAKFSKPESAYQLFDEMPYRD----TISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAEL--LAGIISLCSQI 142 (580)
Q Consensus 69 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~ 142 (580)
.+...++.|+.+.+..+++.-...+ ..-+ +.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3444566777777777776544332 2222 3444555667654 4555556666554321 11233344455
Q ss_pred CCcHHHHHHHHHHHHhCCCCCchH--HHhHHHHHhHhcCCHHHHHHHHhcCCCCCee-------------hHHHHHHHHH
Q 041384 143 GELELGRQIHALVIVDGSFELSVF--VSTALLDLYSKCHHWLIALRVFEQMVIRNEV-------------SWTAMISGCI 207 (580)
Q Consensus 143 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~li~~~~ 207 (580)
|+.+.++ .+.+.| ..++.. .-.+.+...+..|+.+-+..+++.-..++.. -. ..+...+
T Consensus 83 ~~~~~v~----~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~ 156 (285)
T 1wdy_A 83 GSVKLLK----LFLSKG-ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAA 156 (285)
T ss_dssp TCHHHHH----HHHHTT-CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHH
T ss_pred CCHHHHH----HHHHcC-CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHH
Confidence 6655444 444445 333321 1123344556778888777777765433221 11 2233444
Q ss_pred hcCChhHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCc
Q 041384 208 DSQNYDTGIDLFRAMQRE-GVKPTR---VTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFD 265 (580)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (580)
..|+.+-+..+ .+. |..++. ...+. +...+..++......+.+.+.+.|..++
T Consensus 157 ~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 157 EKGHVEVLKIL----LDEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHTCHHHHHHH----HHTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HcCCHHHHHHH----HHhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCC
Confidence 56665444333 333 433322 22222 2333345555555667777777766544
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.32 E-value=76 Score=29.43 Aligned_cols=33 Identities=9% Similarity=-0.064 Sum_probs=22.8
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 041384 533 PENAANYTLLSMVCSESGNWLGAEEVWRVMRAKGL 567 (580)
Q Consensus 533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (580)
|-....+..++..+.- ..+++...+-+|+..|.
T Consensus 313 pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 313 PYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred hhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 5555566666665532 67888888888888763
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.57 E-value=48 Score=26.90 Aligned_cols=140 Identities=9% Similarity=-0.030 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhc
Q 041384 62 DPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141 (580)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 141 (580)
|..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.++.+. ...+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 333333334444444443333333333444444444445555555554332 233333332 2455555555555555
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhcCCCCCeehHHHHHHHHHhcC
Q 041384 142 IGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQMVIRNEVSWTAMISGCIDSQ 210 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 210 (580)
.++.+....+.. +.. .++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.|
T Consensus 103 ~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 103 IGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred hCcHHHHHHHHH-HHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555432222222 221 2344444444444444444333323333333333333334444444443
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.11 E-value=19 Score=30.32 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCChh--HHHHHHHHHHcCCCchHHHHhhccCC
Q 041384 51 HCTALKSGSDADPV--ISNSLISMYAKFSKPESAYQLFDEMP 90 (580)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 90 (580)
++.+.+.|..++.. .-...+...++.|+.+-+..+++.-.
T Consensus 25 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 25 CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 34444556444322 11234455566777777777776554
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.13 E-value=61 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 413 GYGEEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 413 ~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
+...++.++|..|...|+--.. ..|......+...|++.+|..+|+..++ .+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 3456788888888888766544 5566777777788888888888887665 444553
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.80 E-value=58 Score=27.21 Aligned_cols=83 Identities=7% Similarity=-0.061 Sum_probs=41.5
Q ss_pred HHhhcccchhHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHcCCCchHHHHhhccCCCC---CccchHHHHHHHHhCCC
Q 041384 35 KACAYAQTHQHFGLQLHCTALKSGSDADPVI--SNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGF 109 (580)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 109 (580)
...+..|+. +.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +..-++. +...+..|+
T Consensus 14 ~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 14 HIAVVQGNL-PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHcCCH-HHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 334455777 777777777666665444321 112334445567776666666543322 2222233 333345565
Q ss_pred hhHHHHHHHH
Q 041384 110 YVRSLEMFRE 119 (580)
Q Consensus 110 ~~~a~~~~~~ 119 (580)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5544444443
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.38 E-value=63 Score=26.43 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 041384 61 ADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140 (580)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 140 (580)
++..+-...+..+.+.|+.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444444444444444333333334344444444444555555555432 2222323222 234444445555555
Q ss_pred ccCCc
Q 041384 141 QIGEL 145 (580)
Q Consensus 141 ~~~~~ 145 (580)
+.++.
T Consensus 107 ~~~~~ 111 (211)
T 3ltm_A 107 QIGDE 111 (211)
T ss_dssp HHCCG
T ss_pred HhCcH
Confidence 55543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.82 E-value=42 Score=29.38 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=10.4
Q ss_pred HHHcCCCchHHHHhhccC
Q 041384 72 MYAKFSKPESAYQLFDEM 89 (580)
Q Consensus 72 ~~~~~g~~~~A~~~~~~~ 89 (580)
..+..|+.+-+..+++.-
T Consensus 37 ~A~~~g~~~~v~~Ll~~g 54 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNAG 54 (285)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 344556666666666553
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=59.77 E-value=48 Score=26.86 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=41.4
Q ss_pred hHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 041384 486 IEDACKVVSTMPMKPSTR--I-----LSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~--~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
++.|+.+|+.+...-+.. . -...+..|.+.|.+++|.+++++..+..+.+...-.-|...-.+...+..-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 577888888885332221 1 1233456889999999999999988877776666555555544444433333
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.27 E-value=33 Score=25.75 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=37.3
Q ss_pred HhHHHHHhHhcCCHHHHHHHHhcCCCCC---eehHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCC
Q 041384 168 STALLDLYSKCHHWLIALRVFEQMVIRN---EVSWTAMISGCIDSQN--YDTGIDLFRAMQREGVKPT 230 (580)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 230 (580)
...++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3456666777788888888888876551 1223334444444322 3556677777776665443
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.14 E-value=22 Score=29.89 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=7.7
Q ss_pred HcCCCchHHHHhhcc
Q 041384 74 AKFSKPESAYQLFDE 88 (580)
Q Consensus 74 ~~~g~~~~A~~~~~~ 88 (580)
++.|+.+....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 444555555555544
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.44 E-value=49 Score=27.60 Aligned_cols=31 Identities=6% Similarity=0.044 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 502 TRILSSLVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
...|......+...|++++|.++|+..++.+
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444555555555555555555555555443
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.37 E-value=1.7e+02 Score=29.42 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 041384 99 SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCS 140 (580)
Q Consensus 99 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 140 (580)
.+|-.+.+.|.+++|.++.++.... +.--...|...+..++
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 4566777788888887777655432 1111234555555555
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.37 E-value=47 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHcCCCchHHHHhhccCC----CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 041384 73 YAKFSKPESAYQLFDEMP----YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLK 128 (580)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 128 (580)
.+..|+.+....++..-. ..|..-++.|..+ ++.|+. ++++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 345566777777666543 1233333333333 344443 34444445555443
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.10 E-value=1.9e+02 Score=29.05 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=14.3
Q ss_pred HHhcCChHHHHHHHHHH
Q 041384 546 CSESGNWLGAEEVWRVM 562 (580)
Q Consensus 546 ~~~~g~~~~A~~~~~~~ 562 (580)
+++.|+|++|.+.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 37899999999988874
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.27 E-value=26 Score=27.29 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=37.2
Q ss_pred HhHHHHHhHhcCCHHHHHHHHhcCCCCC---eehHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCC
Q 041384 168 STALLDLYSKCHHWLIALRVFEQMVIRN---EVSWTAMISGCIDSQN--YDTGIDLFRAMQREGVKPT 230 (580)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 230 (580)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4456667777788888888888876551 2233334444444222 3456677777776665443
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.18 E-value=1.3e+02 Score=26.66 Aligned_cols=72 Identities=1% Similarity=0.015 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC--chhHHHHHHHHHHhcCCCchhHHHH
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRD--LRNGKAIHGYAYCCGFDFDHHLSAA 271 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 271 (580)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.++ .+....++..+.+.|+-+.......
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 457888888999999999999988521111 12333444445555433 4556677777777776655444333
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.67 E-value=1.5e+02 Score=27.05 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=41.5
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGY--GEEALQLFLEMQESGVEPDA 434 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p~~ 434 (580)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+..
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 5677778888999999999998887642 234444455544332 34566777777776655433
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.34 E-value=31 Score=27.22 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHcCCCch
Q 041384 7 YEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKS--GSDADPVISNSLISMYAKFSKPE 80 (580)
Q Consensus 7 ~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 80 (580)
.+.+++-+.+.+...|++++. .-..++..+...+.. -.|.++++.+.+. +...+..|--.-+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h-~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTH-YTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSC-BCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCC-CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 455666664666777877643 445566666665555 6788888888877 65566666556666777777443
No 298
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=50.18 E-value=89 Score=27.97 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=26.6
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHcCCCchHHHHhhccC
Q 041384 32 SVIKACAYAQTHQHFGLQLHCTALKSGSDADPV----ISNSLISMYAKFSKPESAYQLFDEM 89 (580)
Q Consensus 32 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 89 (580)
..|...++.|+. +.++ .+++.|..+|.. -++.| ...++.|+.+-+.-+++.-
T Consensus 27 t~L~~Av~~g~~-~~V~----~LL~~Gadvn~~~~~~g~TpL-h~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 27 HLLIKAVQNEDV-DLVQ----QLLEGGANVNFQEEEGGWTPL-HNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHTTCH-HHHH----HHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCH-HHHH----HHHHCCCCCCccCCCCCcCHH-HHHHHcCCHHHHHHHHHcC
Confidence 344444556666 5444 344567555432 12333 3345567766666666543
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.93 E-value=62 Score=30.40 Aligned_cols=324 Identities=11% Similarity=0.074 Sum_probs=154.6
Q ss_pred HHHHHhHhcCCHHHHHHHHhcCCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcC
Q 041384 170 ALLDLYSKCHHWLIALRVFEQMVIRN---EVSWTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV--TLTIVLLACAEL 244 (580)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~ 244 (580)
+.+...+..|+.+-+..+++.-..++ .... +.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHC
Confidence 34556677899999998888754443 2222 3344556677765444444 445443321 112234444555
Q ss_pred CCchhHHHHHHHHHHhcCCCchhH--HHHHHHHHHHcCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHH
Q 041384 245 RDLRNGKAIHGYAYCCGFDFDHHL--SAALMHMYCECTEALHPARIIFERTKVKD---VVIWSSIIRGYSQSGDLSEAMK 319 (580)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 319 (580)
|+.+ +++.+.+.|..++... ....+...+..|. .+....+++.....+ ..-++ .+...+..|+.+-+.
T Consensus 91 g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~- 163 (437)
T 1n11_A 91 GHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGH-VETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAE- 163 (437)
T ss_dssp TCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHH-
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHH-
Confidence 6554 4555566666544221 1223344456677 888888887655432 12222 334445667765443
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHH--HHHHHHhHhcCCHHHHHHHHhcC
Q 041384 320 LFSRMRLERIEPNSV---TLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIG--NALMNMYSKCGSITSSHQIFNEM 394 (580)
Q Consensus 320 ~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 394 (580)
.+.+.|..++.. ..+ .+...+..|+.+ +++.+.+.|..++.... ...+...+..|+.+-+..+++.-
T Consensus 164 ---~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 164 ---LLLERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp ---HHHHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ---HHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344455444321 112 233334455543 44455555554432211 12344456678888777777754
Q ss_pred CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 041384 395 AAR---DFVSWTTLISGYGFHGYGEEALQLFLEMQESGVEPDA---ITVLAILSACNHAGLVKEAETLFNNVMKEKKIAL 468 (580)
Q Consensus 395 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 468 (580)
... +....+.|. ..+..|+.+ +++.+.+.|..++. ...+.+ ...+..|..+-+.-+++ .|..+
T Consensus 236 ~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~-----~g~~~ 304 (437)
T 1n11_A 236 GSANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLIK-----HGVMV 304 (437)
T ss_dssp CCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHH-----HTCCT
T ss_pred CCCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHh-----CCccC
Confidence 332 222223333 234455543 44444555554432 222222 23345566655444433 34433
Q ss_pred Chh---HHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041384 469 AIE---HYACYVDLLGKSGKIEDACKVVSTMP--MKPSTRILSSLVSACRIHGRLEVAEMLAH 526 (580)
Q Consensus 469 ~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 526 (580)
+.. -.+ .+...+..|+.+-+.-+++.-. ...+..-...|.. .++.|+.+-+..+++
T Consensus 305 ~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 305 DATTRMGYT-PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTDIVTLLLK 365 (437)
T ss_dssp TCCCSSCCC-HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChHHHHHHHHH
Confidence 311 111 2333456777776666665432 1122222233333 345677655444444
No 300
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=48.32 E-value=1.3e+02 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=7.8
Q ss_pred CCcchHHHHHHHHHhcCC
Q 041384 397 RDFVSWTTLISGYGFHGY 414 (580)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~ 414 (580)
++...-...+.++.+.++
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 343334444444444443
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.31 E-value=53 Score=29.77 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=34.1
Q ss_pred HhHHHHHhHhcCCHHHHHHHHhcCCCCCe---ehHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC
Q 041384 168 STALLDLYSKCHHWLIALRVFEQMVIRNE---VSWTAMISGCIDS-QNYDTGIDLFRAMQREGVK 228 (580)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~ 228 (580)
...++.-|...|+.++|.+.++++..|.- .....+..++-+. ...+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 34566777778888888888888876631 1122222222111 1234555666666666543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.80 E-value=59 Score=24.35 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=37.0
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGY--GEEALQLFLEMQESGVEP 432 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p 432 (580)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.+. .+....++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 5566777777888888888888765522 233444445444432 345666777776665444
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.62 E-value=24 Score=30.30 Aligned_cols=55 Identities=11% Similarity=-0.078 Sum_probs=33.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHh--cCCCchhHHHHHHHH
Q 041384 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVT-------LTIVLLACA--ELRDLRNGKAIHGYA 257 (580)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 257 (580)
+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445667888888888887777765555332 233433332 567777666666554
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.57 E-value=47 Score=31.99 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 041384 470 IEHYACYVDLLGKSGKIEDACKVVSTMPMKPSTR-------ILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAA 537 (580)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 537 (580)
...++.+++.|...+.++.|..+..+..++.... .+-.++..+.-.+++.+|.+.+..+.+.-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4567788888888888888988888886443211 1223445566778888888888888887776543
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.34 E-value=42 Score=28.68 Aligned_cols=92 Identities=9% Similarity=-0.083 Sum_probs=49.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhh-------HHHHHHHhh--ccCCcHHHHHHHHHHHHhCC--------C-C
Q 041384 101 INCFTQNGFYVRSLEMFREMYLCGFVLKAEL-------LAGIISLCS--QIGELELGRQIHALVIVDGS--------F-E 162 (580)
Q Consensus 101 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--------~-~ 162 (580)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.++.+++.-...+. + .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3444567788877777777776665555332 233333332 56777777777766543220 0 0
Q ss_pred CchHHHhHHHHHhHhcCCHHHHHHHHhcCCC
Q 041384 163 LSVFVSTALLDLYSKCHHWLIALRVFEQMVI 193 (580)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (580)
.|..-. +.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 011112 234445566787777777765433
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.90 E-value=1e+02 Score=29.71 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC-------hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 041384 435 ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA-------IEHYACYVDLLGKSGKIEDACKVVSTM-PMKP-STRIL 505 (580)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 505 (580)
..++.+++.|...+.++.|..+..+. . ++.. ...+..++..+.-.+++.+|.+.+... ...| +....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~-~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL-E---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH-C---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC-c---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence 56788899999999999999999983 2 3222 222334567788899999999988876 3223 32211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 506 SSLVSACRIHGRLEVAEMLAHQLIEAEPEN-----------AANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 506 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
.....++- -.-+.+-+...-|.. ...|..|+.++ +.|+.++-...+++
T Consensus 308 gfr~~a~K-------~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 GFLQQSNK-------LHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHH-------HHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 11111110 011222222333431 12377788876 88998876666543
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.48 E-value=76 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 041384 467 ALAIEHYACYVDLLGKSGKIEDACKVVSTM 496 (580)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (580)
.+........+..+.+.|+.++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334444555666677777777777766443
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.76 E-value=1.2e+02 Score=23.58 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 416 EEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
+++.++|..|..+|+--.. ..|......+...|++.+|..+|+..++ .+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 3478888888888776644 5667777777888888888888888665 455553
No 309
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.49 E-value=92 Score=30.01 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 041384 513 RIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRV 561 (580)
Q Consensus 513 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (580)
+-...++.|...|.++....|.+...|+.|+-.....|+.-+|.-++-+
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 3334455666666666666666666666666666555655555544433
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.04 E-value=1.9e+02 Score=30.71 Aligned_cols=86 Identities=8% Similarity=-0.143 Sum_probs=46.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC--CC-C----------------
Q 041384 440 ILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIEDACKVVSTMP--MK-P---------------- 500 (580)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-p---------------- 500 (580)
++..|...|.++-|.++..- .+.++..--.+..+|...|++++|...|+++. +. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 44455555555544433221 22222222345556666666666666666652 10 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 501 ------STRILSSLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 501 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
....|..++..+-+.+-++-+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1125566677777777777777777777754
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.97 E-value=1.7e+02 Score=25.08 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 041384 508 LVSACRIHGRLEVAEMLAHQLIEAE 532 (580)
Q Consensus 508 l~~~~~~~~~~~~A~~~~~~~~~~~ 532 (580)
.+.++.+.|+ +.+...+..+.+..
T Consensus 241 a~~aL~~i~~-~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 241 IIEAAGELGD-KTLLPVLDTMLYKF 264 (280)
T ss_dssp HHHHHHHHCC-GGGHHHHHHHHTTS
T ss_pred HHHHHHhcCc-hhhhHHHHHHHhcC
Confidence 3445555555 24455555554433
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.61 E-value=1.3e+02 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 416 EEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
+.+.++|..|...|+--.. ..|......+...|++.+|.++|...++ .+-.|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcH
Confidence 3466788888888766544 5566677777788888888888888665 555554
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.22 E-value=56 Score=25.05 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=27.3
Q ss_pred HHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCC
Q 041384 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180 (580)
Q Consensus 120 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (580)
+.+.|.++++.-... +..+...+..-.|.++++.+.+.+ ...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~~I-l~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHAI-LEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHHH-HHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHH-HHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCC
Confidence 445555555443322 223333344455666666665554 33344443344445555543
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.99 E-value=86 Score=23.98 Aligned_cols=59 Identities=10% Similarity=-0.046 Sum_probs=28.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 041384 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281 (580)
Q Consensus 222 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (580)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44455554433332 223333334445555566555555555555555555555555443
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.88 E-value=51 Score=25.62 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 041384 372 NALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGY--GEEALQLFLEMQESGVEP 432 (580)
Q Consensus 372 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p 432 (580)
..++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 5566777777888888888888765522 233444445444322 345666666776665444
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.40 E-value=1.4e+02 Score=24.65 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=91.5
Q ss_pred HhhcccchhHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHcCCCchHHHHhhccCCCC---CccchHHHHHHHHhCCC
Q 041384 36 ACAYAQTHQHFGLQLHCTALKSGSDADPV---ISNSLISMYAKFSKPESAYQLFDEMPYR---DTISWNSIINCFTQNGF 109 (580)
Q Consensus 36 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 109 (580)
..+..|+. + +++.+.+.|..++.. -++ .+...+..|+.+-+..+++.-..+ +....+. +...+..|+
T Consensus 17 ~A~~~g~~-~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~ 89 (237)
T 3b7b_A 17 AAAEAGHV-D----ICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGH 89 (237)
T ss_dssp HHHHHTCH-H----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHcCcH-H----HHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCC
Confidence 33444555 4 344445556444331 222 333445567777666666653322 2222333 333344555
Q ss_pred hhHHHHHHHHHHHCC-CCCC---HhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchH--HHhHHHHHhHhcCCHHH
Q 041384 110 YVRSLEMFREMYLCG-FVLK---AELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVF--VSTALLDLYSKCHHWLI 183 (580)
Q Consensus 110 ~~~a~~~~~~m~~~~-~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 183 (580)
.+ +++.+.+.| ..++ ..-. +.+...+..|+.+... .+.+.| ..++.. .-.+.+...+..|+.+-
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~----~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVK----LLLSKG-SDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHH----HHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HH----HHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHH----HHHHCC-CCCCccCCCCCCHHHHHHHCCCHHH
Confidence 43 333344443 2221 1111 2233334455554333 333444 332221 11223444556677777
Q ss_pred HHHHHhcCCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCCchhHHHHHHHHHH
Q 041384 184 ALRVFEQMVIRNEVS--WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRV--TLTIVLLACAELRDLRNGKAIHGYAYC 259 (580)
Q Consensus 184 a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (580)
+..+++.-..++... -.+.+...++.|+.+-+ +.+.+.|..++.. .-.+.+......++...+.++.+.+.+
T Consensus 160 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666543332111 11223344556665433 3344455444322 112345556677777777777777665
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.51 E-value=60 Score=29.57 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=22.2
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 041384 283 LHPARIIFERTKVKDVVIWSSIIRGYSQSGDLSEAMKLFSRMRLERIE 330 (580)
Q Consensus 283 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 330 (580)
.+.++.+++.....+...-.+.+...+..|+.+-+..+++.....|..
T Consensus 66 ~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 66 VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 455555554444332211122333344566666666666654443433
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.72 E-value=92 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 041384 382 GSITSSHQIFNEMAARDFVSWTTLISGYGFHGYGEEA 418 (580)
Q Consensus 382 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 418 (580)
...+.|.++++.+..+++..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4577888888888888888888888888766665444
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.49 E-value=41 Score=23.67 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHH
Q 041384 50 LHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRS 113 (580)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 113 (580)
+++.+.+.|+ .+......+-. .....+.+.|.++++.++.+...+|..++.++...|...-|
T Consensus 26 vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 5566666664 23322222221 00114678888888888888888888888888765654433
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.18 E-value=61 Score=26.68 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=26.8
Q ss_pred hHHHHHHHHhCC--CCCCHH---HHH-----HHHHHHHhcCCHHHHHHHHHHHHhc
Q 041384 486 IEDACKVVSTMP--MKPSTR---ILS-----SLVSACRIHGRLEVAEMLAHQLIEA 531 (580)
Q Consensus 486 ~~~A~~~~~~~~--~~p~~~---~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~ 531 (580)
++.|+.+|+.+. ...+.. ... ..+..|.+.|.+++|.+++++..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 577788877773 211111 111 2334467777787787777777663
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.45 E-value=1.9e+02 Score=24.16 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCC
Q 041384 416 EEALQLFLEMQESGVEPDA-ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 416 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 469 (580)
+.+..+|..|...|+--.. ..|......+...|++.+|..+|+..++ .+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 5677888888888776644 5667777778888888888888888666 455553
No 322
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.97 E-value=1.8e+02 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=14.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC
Q 041384 203 ISGCIDSQNYDTGIDLFRAMQREGVKP 229 (580)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~~~~~p 229 (580)
+...+..|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 334455666666666665555555433
No 323
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.74 E-value=63 Score=22.39 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCCh
Q 041384 47 GLQLHCTALKSGSDADPVISNSLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFY 110 (580)
Q Consensus 47 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 110 (580)
...+++.+.+.|+ .+...+..+.. .....+.|.++++.++..+...|..++.++.+.+..
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 3456777777774 33333333332 356778888888888888888888888888776653
No 324
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.90 E-value=2.7e+02 Score=25.46 Aligned_cols=26 Identities=0% Similarity=-0.110 Sum_probs=16.2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHH
Q 041384 335 TLLAILSSCTRQSFLSHGLGVHCYIM 360 (580)
Q Consensus 335 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 360 (580)
....++.-|...|+.++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34456666666677766666666653
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.53 E-value=1.3e+02 Score=23.95 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCChh---HHHHHHHHHHcCCCchHHHHhhc
Q 041384 50 LHCTALKSGSDADPV---ISNSLISMYAKFSKPESAYQLFD 87 (580)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 87 (580)
+++.+.+.|..++.. ..+. +...+..|+.+-+..+++
T Consensus 54 ~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 54 IAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLK 93 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 344444556444322 2222 333445566666666663
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.21 E-value=1.6e+02 Score=24.79 Aligned_cols=31 Identities=23% Similarity=-0.137 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041384 499 KPSTRILSSLVSACRIHGRLEVAEMLAHQLI 529 (580)
Q Consensus 499 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 529 (580)
.++.......+..+.+.|+.++|.++|=+..
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 4556666677788888899888888876654
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.20 E-value=79 Score=24.41 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCC
Q 041384 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180 (580)
Q Consensus 120 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (580)
+.+.|.++++.-.. ++..+...+..-.|.++++.+.+.+ ...+..|.-.-++.+...|-
T Consensus 18 l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCc
Confidence 44555554443332 2333333344555666666666555 33444443344445555553
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.70 E-value=24 Score=22.06 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 041384 523 MLAHQLIEAEPE-NAANYTLLSMVCSESGNWLGAEEVWRVMRAKGLSKSY 571 (580)
Q Consensus 523 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 571 (580)
+.++.+.+..|. +........ -...|+.+.|+..+-+|...+.+++.
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL--~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVL--EAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHH--TTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHH--HHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344445555665 333222222 23567777777777777666555543
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.37 E-value=89 Score=23.36 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=28.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhccCC
Q 041384 99 SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQIGE 144 (580)
Q Consensus 99 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 144 (580)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666666667777777777776655566555555555555443
No 330
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.37 E-value=81 Score=24.14 Aligned_cols=15 Identities=13% Similarity=-0.099 Sum_probs=7.1
Q ss_pred cHHHHHHHHHHHHhC
Q 041384 145 LELGRQIHALVIVDG 159 (580)
Q Consensus 145 ~~~a~~~~~~~~~~~ 159 (580)
.-.|.++++.+.+.+
T Consensus 33 h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 33 HATPDDILGEVRKTA 47 (145)
T ss_dssp SBCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhC
Confidence 334555555554443
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.17 E-value=1.3e+02 Score=23.13 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=30.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 041384 222 MQREGVKPTRVTLTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281 (580)
Q Consensus 222 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (580)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 18 l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44555554433332 333333444455666666666666655555555555566665554
No 332
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.81 E-value=1.4e+02 Score=27.96 Aligned_cols=295 Identities=9% Similarity=0.085 Sum_probs=136.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcCCCchhHHHHHHHHHHhcCCCchh--HHHHHHHHHH
Q 041384 202 MISGCIDSQNYDTGIDLFRAMQREGVKPTRVT--LTIVLLACAELRDLRNGKAIHGYAYCCGFDFDHH--LSAALMHMYC 277 (580)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 277 (580)
.+...+..|+.+-+.. +.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..++.. .....+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 3444566777654444 445566554322 2234445555666554 44455556544321 1123344455
Q ss_pred HcCCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCChHH
Q 041384 278 ECTEALHPARIIFERTKVKDV---VIWSSIIRGYSQSGDLSEAMKLFSRMRLERIEP---NSVTLLAILSSCTRQSFLSH 351 (580)
Q Consensus 278 ~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~ 351 (580)
..|. .+.++.+++....++. ...+. +...+..|+.+-+..+++ .+..+ +....+. +...+..|+.+
T Consensus 89 ~~g~-~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~-L~~A~~~g~~~- 160 (437)
T 1n11_A 89 RIGH-TNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFTP-LHVAAKYGKVR- 160 (437)
T ss_dssp HHTC-HHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCH-HHHHHHTTCHH-
T ss_pred HCCC-HHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCH-HHHHHHcCCHH-
Confidence 6677 8888888887665432 22223 334455666665555443 33222 1111222 33334455544
Q ss_pred HHHHHHHHHHhCCCCchhH--HHHHHHHhHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 041384 352 GLGVHCYIMKAGLNFDVSI--GNALMNMYSKCGSITSSHQIFNEMAARDF---VSWTTLISGYGFHGYGEEALQLFLEMQ 426 (580)
Q Consensus 352 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (580)
+.+.+.+.|..++... -...+...+..|+.+-+..+++.-..++. ..++.| ...+..|+.+ +++.+.
T Consensus 161 ---~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll 232 (437)
T 1n11_A 161 ---VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVE----VARSLL 232 (437)
T ss_dssp ---HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHH----HHHHHH
T ss_pred ---HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHH
Confidence 4445555555443211 11233445567777777766665443322 222333 3334556544 444455
Q ss_pred HcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhH--HHHHHHHhhhcCChHHHHHHHHhCC--CC
Q 041384 427 ESGVEPDA---ITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEH--YACYVDLLGKSGKIEDACKVVSTMP--MK 499 (580)
Q Consensus 427 ~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 499 (580)
+.|..++. ...+.+ ...+..|..+-+.-+++ .+..++... -...+...++.|+.+-+..+++.-. ..
T Consensus 233 ~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 233 QYGGSANAESVQGVTPL-HLAAQEGHAEMVALLLS-----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp HTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHT-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred HcCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHh-----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 55544433 122222 23345566655444433 333332110 0112233456677776666665431 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041384 500 PSTRILSSLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 500 p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 527 (580)
.+..-...| ...+..|+.+-+..+++.
T Consensus 307 ~~~~g~t~L-~~A~~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 307 TTRMGYTPL-HVASHYGNIKLVKFLLQH 333 (437)
T ss_dssp CCSSCCCHH-HHHHHSSCSHHHHHHHHT
T ss_pred CCCCCCCHH-HHHHHcCcHHHHHHHHhc
Confidence 222222223 333456776655555443
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.15 E-value=72 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 041384 507 SLVSACRIHGRLEVAEMLAHQ 527 (580)
Q Consensus 507 ~l~~~~~~~~~~~~A~~~~~~ 527 (580)
-....+.+.|.+++|++..++
T Consensus 20 RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHH
Confidence 334445555555555555544
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.98 E-value=64 Score=25.37 Aligned_cols=60 Identities=5% Similarity=0.001 Sum_probs=34.1
Q ss_pred HHHCCCCCCHhhHHHHHHHhhccCCcHHHHHHHHHHHHh--CCCCCchHHHhHHHHHhHhcCCH
Q 041384 120 MYLCGFVLKAELLAGIISLCSQIGELELGRQIHALVIVD--GSFELSVFVSTALLDLYSKCHHW 181 (580)
Q Consensus 120 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 181 (580)
+.+.|.+++..- ..++..+...+..-.|.++++.+.+. + ...+..|.-.-++.+...|-+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 455666665543 33445555555666777777777766 5 444544444445556666643
No 335
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.71 E-value=2.8e+02 Score=24.52 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=35.3
Q ss_pred HhHHHHHhHhcCCHHHHHHHHhcCCCCCe--ehHHHHHHHHHhcCC--hhHHHHHHHHHHH
Q 041384 168 STALLDLYSKCHHWLIALRVFEQMVIRNE--VSWTAMISGCIDSQN--YDTGIDLFRAMQR 224 (580)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 224 (580)
...++.-|...|+.++|...++++..|.- .....+|......++ .+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45678888889999999999999877641 122233333333332 2344556666653
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.38 E-value=2.2e+02 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=40.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHhhCCCCCh
Q 041384 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL-----VKEAETLFNNVMKEKKIALAI 470 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~ 470 (580)
.+..+++.|+-++-+|.+.| .|....-..++-+....|. ...|...++. .+.-|.+--.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a-~~~iG~PE~~ 88 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLA-AEKLGLPEAR 88 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHH-HHHHCTTTTH
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-HHHhCCCHHH
Confidence 45679999999999999999 7776777777777776664 2334444454 3335654443
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.75 E-value=1.9e+02 Score=22.19 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 041384 322 SRMRLERIEPNSVTLLAILSSCTRQS-FLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCGS 383 (580)
Q Consensus 322 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 383 (580)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345667777776543 3444555555 677788888888887766666666666666666654
No 338
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.66 E-value=2.1e+02 Score=23.50 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=8.2
Q ss_pred HhcCChhHHHHHHHHHH
Q 041384 207 IDSQNYDTGIDLFRAMQ 223 (580)
Q Consensus 207 ~~~~~~~~a~~~~~~m~ 223 (580)
+..|+...++++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555555555443
No 339
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.53 E-value=1.2e+02 Score=22.17 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHHHHHHhhhcCChH
Q 041384 414 YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYACYVDLLGKSGKIE 487 (580)
Q Consensus 414 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (580)
.+.+|+.-+++..+. .+|......++..+... ++.+.++.+..++..|+. +.++...+....+.|-.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~~--~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGLE--ARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCC--CSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHcCCCC
Confidence 456677777776553 45666666666655443 566777777766666763 444556666666666443
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.43 E-value=83 Score=23.87 Aligned_cols=43 Identities=5% Similarity=0.014 Sum_probs=21.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhc
Q 041384 99 SIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQ 141 (580)
Q Consensus 99 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 141 (580)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3444444444555566666665555544444444433443333
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.73 E-value=1.6e+02 Score=22.13 Aligned_cols=59 Identities=5% Similarity=0.071 Sum_probs=24.7
Q ss_pred HHHCCCCCCHhhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCC
Q 041384 120 MYLCGFVLKAELLAGIISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHH 180 (580)
Q Consensus 120 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (580)
+.+.|.++++.-... +..+...+ ..-.|.++++.+.+.+ ...+..|.-.-++.+...|-
T Consensus 9 l~~~g~r~T~qR~~I-l~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKI-LQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHHHH-HHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCc
Confidence 344455544433322 22233333 3445555555555554 33333333333344444443
No 342
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.63 E-value=1.8e+02 Score=21.86 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=6.8
Q ss_pred HhcCCHHHHHHHHhc
Q 041384 176 SKCHHWLIALRVFEQ 190 (580)
Q Consensus 176 ~~~~~~~~a~~~~~~ 190 (580)
+..|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344444444444443
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.09 E-value=1.3e+02 Score=22.38 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCc
Q 041384 201 AMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELRDL 247 (580)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (580)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666667777777777766555666666566666555543
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.44 E-value=1.4e+02 Score=19.70 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 041384 220 RAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281 (580)
Q Consensus 220 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (580)
+.|.+.|+.++..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345667777766553 4455555554 566778888888777766666666666666665543
No 345
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.10 E-value=2.7e+02 Score=22.69 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=30.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 041384 410 GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL 449 (580)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 449 (580)
.+..+++.|+-++-+|++.|-.|....-..++-+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 4567899999999999999877777776777766666553
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.08 E-value=97 Score=26.60 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=24.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHh--cCCCchhHHHHHHH
Q 041384 206 CIDSQNYDTGIDLFRAMQREGVKP-------TRVTLTIVLLACA--ELRDLRNGKAIHGY 256 (580)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 256 (580)
.+..|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 345666666666666555544222 2223333444432 24555555555444
No 347
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.87 E-value=2e+02 Score=23.67 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=11.9
Q ss_pred HHhhccCCcHHHHHHHHHHHHhC
Q 041384 137 SLCSQIGELELGRQIHALVIVDG 159 (580)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~ 159 (580)
...+..|+.+.+..+++.+.+.|
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcC
Confidence 33444555555555555555554
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.81 E-value=1.1e+02 Score=23.62 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhccC-CcHHHHHHHHHHHHhCCCCCchHHHhHHHHHhHhcCCH
Q 041384 119 EMYLCGFVLKAELLAGIISLCSQIG-ELELGRQIHALVIVDGSFELSVFVSTALLDLYSKCHHW 181 (580)
Q Consensus 119 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (580)
.|.+.|++++..-... +..+...+ ..-.|.++++.+.+.+ ...+..|.-.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~~I-l~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKI-LEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHHHH-HHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 3455666655544432 33333344 4556667777666665 344444444444555555543
No 349
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.76 E-value=2.8e+02 Score=22.58 Aligned_cols=174 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHHHHccCCCCCCCcchHHHHHHhhcccchhHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHcCCCc
Q 041384 2 VSKHFYEQTLHLYKQELHPSGLYSNTAILPSVIKACAYAQTHQHFGLQLHCTALKSGSDADPVISN--SLISMYAKFSKP 79 (580)
Q Consensus 2 ~~~~~~~~a~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~ 79 (580)
++.|+.+....++ ..-...--.++..-.+.+..++.....- +++.+.+.|..++..... +.+...+..|+.
T Consensus 14 ~~~g~~~~v~~ll-~~~~~~~~~~~~~g~t~L~~A~~~g~~~------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 86 (231)
T 3aji_A 14 AYSGKLDELKERI-LADKSLATRTDQDSRTALHWACSAGHTE------IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86 (231)
T ss_dssp HHHTCHHHHHHHH-HHCGGGGGCCCTTSCCHHHHHHHHTCHH------HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHH-HhchhhhhcCCCCCCCHHHHHHHcCcHH------HHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Q ss_pred hHHHHhhccCC---CCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH--HHHHHhhccCCcHHHHHHHHH
Q 041384 80 ESAYQLFDEMP---YRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLA--GIISLCSQIGELELGRQIHAL 154 (580)
Q Consensus 80 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~ 154 (580)
+-+..+++.-. .++..-.+.+..+..... .++++.+.+.|..++..... +.+...+..|+.+.+..+++
T Consensus 87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~- 160 (231)
T 3aji_A 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNR-----HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF- 160 (231)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-
Q ss_pred HHHhCCCCCchHHHhHHHHHhHhcCCHHHHHHHHhc
Q 041384 155 VIVDGSFELSVFVSTALLDLYSKCHHWLIALRVFEQ 190 (580)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (580)
.... +......-.+-+...+..|+.+-+.-+++.
T Consensus 161 -~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 161 -YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp -TTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -cCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC
No 350
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.73 E-value=4e+02 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=18.3
Q ss_pred hHHHHHhHhcCCHHHHHHHHhcCCCCC
Q 041384 169 TALLDLYSKCHHWLIALRVFEQMVIRN 195 (580)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (580)
..++.=|...|+.++|.+.++++..|+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 455666677777777777777776653
No 351
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.20 E-value=1.5e+02 Score=22.64 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcC
Q 041384 247 LRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECT 280 (580)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (580)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555444444444444444444444
No 352
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.00 E-value=3.1e+02 Score=22.76 Aligned_cols=172 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC-CHHHHHHHHhcCCCCC
Q 041384 320 LFSRMRLERIEPNSVTLLAILSSCTRQSFLSHGLGVHCYIMKAGLNFDVSIGNALMNMYSKCG-SITSSHQIFNEMAARD 398 (580)
Q Consensus 320 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 398 (580)
+.+-....|...+...+..+........-...|+.++ .--..+-.-|-.-+.+.| ..+.+..+++.+.+.+
T Consensus 35 l~~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~L--------s~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g 106 (221)
T 3d5l_A 35 LIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYL--------SYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQ 106 (221)
T ss_dssp HHHTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHH--------TTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHh--------ccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q ss_pred cchHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCChhHHHH
Q 041384 399 FVSWTTLISGYGFHG---YGEEALQLFLEMQESGVEPDAITVLAILSACNHAGLVKEAETLFNNVMKEKKIALAIEHYAC 475 (580)
Q Consensus 399 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 475 (580)
...=......|++.. .......+-.++...|+ +.......+..+......+.|..++++-.......++......
T Consensus 107 ~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI--~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K 184 (221)
T 3d5l_A 107 LIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGI--GESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQK 184 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTC--CHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCC--CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHH
Q ss_pred HHHHhhhcC-ChHHHHHHHHhCCCCCC
Q 041384 476 YVDLLGKSG-KIEDACKVVSTMPMKPS 501 (580)
Q Consensus 476 l~~~~~~~g-~~~~A~~~~~~~~~~p~ 501 (580)
++..+.+.| .++.+..++++....++
T Consensus 185 ~~~~L~rrGFs~~~I~~vl~~~~~~~~ 211 (221)
T 3d5l_A 185 VQQGLTTKGFSSSVYEMIKDEVVPQPD 211 (221)
T ss_dssp HHHHHHHTTCCHHHHHHHTTC------
T ss_pred HHHHHHhCCCCHHHHHHHHHhccchhh
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.69 E-value=4.8e+02 Score=24.79 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=13.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHhcCC
Q 041384 370 IGNALMNMYSKCGSITSSHQIFNEMA 395 (580)
Q Consensus 370 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 395 (580)
.|..-.+.+...|++++|.++-...+
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 33334445555566666655554443
No 354
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.67 E-value=1.9e+02 Score=20.25 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHH-HHHHHHHHHHhhCCCCChhHHHHHH
Q 041384 417 EALQLFLEMQESGVEPDAITVLAILSACNHAGL-VKE-AETLFNNVMKEKKIALAIEHYACYV 477 (580)
Q Consensus 417 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~l~ 477 (580)
.|.++.+++..-|+.|+..+..-++..|..-+- .++ +.+++.--....|..|+...++.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 466777888888999988888888887766543 222 2222221123467788877766553
No 355
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.59 E-value=93 Score=25.64 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCh-hHH-----HHHHHHhhhcCChHHHHHHHHhCC
Q 041384 450 VKEAETLFNNVMKEKKIALAI-EHY-----ACYVDLLGKSGKIEDACKVVSTMP 497 (580)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 497 (580)
.+.|+.+|+.+-++..+..+. ... ...+-.|.+.|.+++|.+++++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 456777777644433222211 111 133456789999999999999884
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.44 E-value=3.8e+02 Score=28.45 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHH
Q 041384 68 SLISMYAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMY 121 (580)
Q Consensus 68 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 121 (580)
.++..|...|..+-|.++....+. +...--.+..+|...|++++|..+|++.-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 367778888899988887777664 43333456778889999999999998763
No 357
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.06 E-value=1.8e+02 Score=26.24 Aligned_cols=80 Identities=15% Similarity=0.027 Sum_probs=35.4
Q ss_pred hhhcCChHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 041384 480 LGKSGKIEDACKVVSTMPM-------KPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNW 552 (580)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~-------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 552 (580)
.+..|+.+-+..+++.... ..+..-...|. ..+..|+.+-+..+++.-...+..+..-...|- ..+..|+.
T Consensus 180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~ 257 (364)
T 3ljn_A 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAMV 257 (364)
T ss_dssp HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCCH
T ss_pred HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHhChH
Confidence 3466777666666664321 11222222222 334567665544444432222222222122222 22356777
Q ss_pred HHHHHHHHH
Q 041384 553 LGAEEVWRV 561 (580)
Q Consensus 553 ~~A~~~~~~ 561 (580)
+-+..+++.
T Consensus 258 ~~v~~Ll~~ 266 (364)
T 3ljn_A 258 LLTKELLQK 266 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666654
No 358
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=23.04 E-value=1.4e+02 Score=18.39 Aligned_cols=40 Identities=15% Similarity=0.019 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHH
Q 041384 517 RLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAE 556 (580)
Q Consensus 517 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 556 (580)
..++|..+.+-+.........+-...+..+...|+|++|.
T Consensus 21 cH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 21 CHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp CHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3455555555544443322222333334455666666664
No 359
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=22.92 E-value=2.1e+02 Score=28.84 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=48.1
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 041384 486 IEDACKVVSTMPMKPSTRILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESG 550 (580)
Q Consensus 486 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 550 (580)
.+.|.++++-|. .........+.....|++..|.++++.+...+|+|..+...++++|.+.|
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 355666666664 33334445566678899999999999999999999999999999888876
No 360
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.82 E-value=74 Score=19.85 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=15.2
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCch
Q 041384 142 IGELELGRQIHALVIVDGSFELSV 165 (580)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~ 165 (580)
.-|++.|...|..+...|.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 346666777777766666566654
No 361
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.58 E-value=3.2e+02 Score=22.45 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=43.8
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHhhCCCCC
Q 041384 403 TTLISGY---GFHGYGEEALQLFLEMQESGVEPDAITVLAILSACNHAGL-----VKEAETLFNNVMKEKKIALA 469 (580)
Q Consensus 403 ~~l~~~~---~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 469 (580)
.-+|+++ .+..+++.|+-++-+|++.|-.|....-..++-+....|. ...|...++. .+.-|.+--
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a-~~~iG~PE~ 109 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDA-FDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHH-HHHHCTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-HHHhCCCHH
Confidence 3345554 4567999999999999999888877777777777666553 3345555554 333555433
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.37 E-value=1.2e+02 Score=22.99 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=17.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 041384 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAE 243 (580)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (580)
+..+...+..-.|.++++.+.+.+...+..|....|..+..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333333444455555555544444444444333333333
No 363
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.19 E-value=1.8e+02 Score=26.22 Aligned_cols=65 Identities=8% Similarity=0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhcCCC
Q 041384 199 WTAMISGCIDSQNYDTGIDLFRAMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCGFDF 264 (580)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~ 264 (580)
...++.-|...|+.++|...++++...... .......+..+.-+.. ..+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 456788899999999999999988522111 1122222222332221 2334455566665555443
No 364
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.47 E-value=4.4e+02 Score=23.51 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=43.4
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 041384 492 VVSTMPMKPST--RILSSLVSACRIHGRLEVAEMLAHQLIEAEPENAANYTLLSMVCSESGNWLGAEEVWRVMRAK 565 (580)
Q Consensus 492 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (580)
+|.....+|.. -++..-+....+.+++..|..+.+++++.+|... ..++|.++++...+.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 44555556533 3566777778899999999999999999998532 345577777776554
No 365
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.08 E-value=3.6e+02 Score=22.44 Aligned_cols=92 Identities=10% Similarity=-0.059 Sum_probs=45.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCC---------
Q 041384 203 ISGCIDSQNYDTGIDLFRAMQREGVKPTR-------VTLTIVLLACAE--LRDLRNGKAIHGYAYCCGFDF--------- 264 (580)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 264 (580)
+...+..|+.+....+++.+.+.|..++. .-.+.+..++.. .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34456677777777777776666654432 223333333322 266666666555433322110
Q ss_pred -chhHHHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 041384 265 -DHHLSAALMHMYCECTEALHPARIIFERTKVK 296 (580)
Q Consensus 265 -~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 296 (580)
+..- ...+...+..|. .+.++.+++.....
T Consensus 86 ~d~~g-~t~L~~A~~~g~-~~~v~~Ll~~ga~~ 116 (256)
T 2etb_A 86 EFYQG-HSALHIAIEKRS-LQCVKLLVENGADV 116 (256)
T ss_dssp TTTTT-CCHHHHHHHTTC-HHHHHHHHHTTCCT
T ss_pred ccccC-CCHHHHHHHcCC-HHHHHHHHHcCCCC
Confidence 0111 122333344555 66666666665443
No 366
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.99 E-value=2.7e+02 Score=20.83 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=38.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhcCCCchhHHHHHHHHHHHcCC
Q 041384 221 AMQREGVKPTRVTLTIVLLACAELR-DLRNGKAIHGYAYCCGFDFDHHLSAALMHMYCECTE 281 (580)
Q Consensus 221 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (580)
.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 356677776655444 344455555 667788888888887777777666666666665543
No 367
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.57 E-value=3e+02 Score=23.35 Aligned_cols=18 Identities=6% Similarity=-0.009 Sum_probs=10.6
Q ss_pred HhHhcCCHHHHHHHHhcC
Q 041384 174 LYSKCHHWLIALRVFEQM 191 (580)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~ 191 (580)
..+..|+.+-+..+++.-
T Consensus 107 ~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 107 IAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHCC
Confidence 344566666666666553
No 368
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.43 E-value=1.3e+02 Score=20.26 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 041384 449 LVKEAETLFNNVMKEKKIALAIEHYACYVDL 479 (580)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (580)
..++|...|.+|+.+.++.|+.. |...+..
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~t-We~~~~~ 44 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFST-WEKELHK 44 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSC-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCCC-HHHHHHH
Confidence 46788888999888888888753 4444433
No 369
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.41 E-value=49 Score=24.34 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=33.8
Q ss_pred HHcCCCchHHHHhhccCCCCCccchHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHhhcc
Q 041384 73 YAKFSKPESAYQLFDEMPYRDTISWNSIINCFTQNGFYVRSLEMFREMYLCGFVLKAELLAGIISLCSQI 142 (580)
Q Consensus 73 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 142 (580)
|.+++++++++.+..+ -..|.-.|..-+..++.+-|.++++-..+.| +...|...+-.|-..
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdL 77 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 77 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTC
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhc
Confidence 3445555555444332 2234445555566666666666666666654 455555555555444
Done!