BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041388
         (440 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
 pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
 pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
           Complex With Glucose 6-Phosphate
 pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
           Complex With Glucose 6-Phosphate
 pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
           Complex With Erythrose 4-Phosphate
 pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
           Complex With Erythrose 4-Phosphate
          Length = 564

 Score = 32.3 bits (72), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 93  HTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIAT--ALMREVG-EIQLYLG 140
           H V L TN AK+ +F +    P N+  F+DW+    +L   +G  I L++G
Sbjct: 242 HFVALSTNTAKVKEFGI---DPQNMLEFWDWVGGRYSLWSAIGLSIALHVG 289


>pdb|2PYX|A Chain A, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
 pdb|2PYX|B Chain B, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
          Length = 526

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 142 QSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVRLENPNKSVTENLFCS 201
           Q  +   EA++ AA  + +     F+ Q+P+     P  + L+ RL N N+  T+ L  +
Sbjct: 450 QQDISYKEALFPAASFQYVLYGXSFNTQLPTH--VKPSXQQLAQRLFNDNQQRTQALSKN 507

Query: 202 CPSLEEL 208
            P+  EL
Sbjct: 508 LPTNREL 514


>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
           Inhibitor
          Length = 290

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLK 158
              GK SLYC  PTN     + +A   ++E    QL  G Q  +E+   +Y    +K
Sbjct: 19  GHFGKVSLYCYDPTNDGTG-EMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVK 74


>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
           Inhibitor
          Length = 291

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLK 158
              GK SLYC  PTN     + +A   ++E    QL  G Q  +E+   +Y    +K
Sbjct: 20  GHFGKVSLYCYDPTNDGTG-EMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVK 75


>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
           Domain Of Human Kiaa0343 Protein
          Length = 127

 Score = 28.9 bits (63), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 22/34 (64%)

Query: 375 KNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW 408
           K++++    GD++  P+ K+++++  AM K  +W
Sbjct: 31  KSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLW 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,535,054
Number of Sequences: 62578
Number of extensions: 495712
Number of successful extensions: 921
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 5
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)