Query 041388
Match_columns 440
No_of_seqs 167 out of 1721
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.5 2.1E-16 4.5E-21 140.7 -3.9 218 27-267 98-324 (419)
2 KOG4341 F-box protein containi 99.5 2E-16 4.2E-21 147.0 -7.4 343 26-419 70-445 (483)
3 smart00579 FBD domain in FBox 99.5 2.7E-13 6E-18 99.0 7.7 72 368-440 1-72 (72)
4 PF08387 FBD: FBD; InterPro: 99.0 2.3E-10 5.1E-15 76.7 4.5 45 364-408 6-50 (51)
5 PF12937 F-box-like: F-box-lik 98.7 1.1E-08 2.3E-13 67.7 2.5 35 27-61 1-35 (47)
6 PLN00113 leucine-rich repeat r 98.3 1.3E-06 2.8E-11 96.5 7.8 149 130-287 93-246 (968)
7 PF00646 F-box: F-box domain; 98.2 3.4E-07 7.4E-12 60.8 0.5 37 27-63 3-39 (48)
8 smart00256 FBOX A Receptor for 98.1 1.5E-06 3.2E-11 55.5 1.8 33 30-62 1-33 (41)
9 PLN03210 Resistant to P. syrin 98.1 4.8E-06 1E-10 92.9 6.9 13 371-383 868-880 (1153)
10 PLN00113 leucine-rich repeat r 97.9 1.6E-05 3.5E-10 87.9 7.1 80 131-213 165-246 (968)
11 KOG4194 Membrane glycoprotein 97.8 7.2E-06 1.6E-10 80.5 0.7 112 144-267 209-328 (873)
12 PLN03210 Resistant to P. syrin 97.6 0.00028 6.1E-09 79.0 9.9 54 156-213 590-644 (1153)
13 KOG4194 Membrane glycoprotein 97.5 4.7E-05 1E-09 75.0 2.7 112 146-266 163-279 (873)
14 KOG1909 Ran GTPase-activating 97.4 6E-05 1.3E-09 69.8 1.2 256 90-383 20-309 (382)
15 cd00116 LRR_RI Leucine-rich re 97.3 2.8E-05 6E-10 74.3 -1.5 39 372-411 250-289 (319)
16 KOG4341 F-box protein containi 97.3 3.3E-06 7.1E-11 79.7 -7.8 60 154-213 163-226 (483)
17 PF07723 LRR_2: Leucine Rich R 97.3 0.0002 4.4E-09 40.2 2.4 25 179-203 1-26 (26)
18 KOG2120 SCF ubiquitin ligase, 97.1 6.1E-05 1.3E-09 68.4 -1.5 155 103-268 211-375 (419)
19 cd00116 LRR_RI Leucine-rich re 97.1 0.00028 6E-09 67.3 2.7 248 153-410 21-317 (319)
20 KOG0444 Cytoskeletal regulator 97.0 2.6E-05 5.6E-10 77.4 -5.5 69 143-212 43-112 (1255)
21 KOG3207 Beta-tubulin folding c 97.0 3.9E-05 8.5E-10 73.0 -4.5 159 151-320 142-314 (505)
22 KOG3207 Beta-tubulin folding c 96.8 0.0003 6.6E-09 67.1 -0.1 188 131-332 147-360 (505)
23 KOG1947 Leucine rich repeat pr 96.3 0.00015 3.4E-09 73.3 -5.7 131 131-264 189-329 (482)
24 PF14580 LRR_9: Leucine-rich r 96.3 0.0028 6.2E-08 54.4 2.6 40 301-358 107-146 (175)
25 PRK15370 E3 ubiquitin-protein 96.2 0.0044 9.6E-08 65.6 4.1 115 131-268 179-295 (754)
26 KOG3665 ZYG-1-like serine/thre 95.8 0.0054 1.2E-07 64.3 2.7 61 154-215 121-185 (699)
27 PF13855 LRR_8: Leucine rich r 95.7 0.0055 1.2E-07 42.6 1.4 56 155-213 1-59 (61)
28 PF14580 LRR_9: Leucine-rich r 95.5 0.0075 1.6E-07 51.9 1.8 79 131-215 20-100 (175)
29 KOG2982 Uncharacterized conser 95.5 0.006 1.3E-07 55.7 1.3 228 156-397 46-307 (418)
30 PRK15387 E3 ubiquitin-protein 95.4 0.035 7.5E-07 58.9 6.9 111 131-267 202-313 (788)
31 KOG1909 Ran GTPase-activating 95.4 0.0028 6E-08 59.1 -1.1 184 195-409 84-279 (382)
32 KOG0444 Cytoskeletal regulator 95.4 0.00061 1.3E-08 68.0 -5.7 194 145-358 93-297 (1255)
33 PRK15370 E3 ubiquitin-protein 95.1 0.025 5.4E-07 60.1 4.5 72 131-213 200-272 (754)
34 KOG0617 Ras suppressor protein 94.9 0.0017 3.7E-08 54.5 -3.6 67 144-213 45-112 (264)
35 KOG1259 Nischarin, modulator o 94.9 0.014 3.1E-07 53.4 1.8 232 145-395 172-450 (490)
36 KOG0618 Serine/threonine phosp 94.8 0.0022 4.8E-08 66.9 -4.1 57 300-358 376-436 (1081)
37 KOG0618 Serine/threonine phosp 94.4 0.0034 7.3E-08 65.6 -3.6 66 120-190 256-323 (1081)
38 KOG0281 Beta-TrCP (transducin 94.3 0.013 2.9E-07 54.1 0.3 37 24-60 72-112 (499)
39 PRK15387 E3 ubiquitin-protein 94.0 0.12 2.7E-06 54.8 6.6 51 131-189 223-274 (788)
40 KOG2739 Leucine-rich acidic nu 93.5 0.01 2.3E-07 53.2 -1.8 108 154-265 42-152 (260)
41 PLN03215 ascorbic acid mannose 92.4 0.068 1.5E-06 51.4 1.7 37 27-63 4-41 (373)
42 COG5238 RNA1 Ran GTPase-activa 92.3 0.19 4.2E-06 45.6 4.3 215 104-358 32-278 (388)
43 KOG2997 F-box protein FBX9 [Ge 92.0 0.072 1.6E-06 49.1 1.3 37 23-59 103-144 (366)
44 KOG1947 Leucine rich repeat pr 91.6 0.051 1.1E-06 54.9 -0.1 105 131-236 215-329 (482)
45 KOG2123 Uncharacterized conser 91.3 0.026 5.6E-07 51.3 -2.2 103 229-358 20-123 (388)
46 KOG4237 Extracellular matrix p 90.0 0.035 7.7E-07 52.8 -2.7 50 300-350 315-373 (498)
47 KOG3665 ZYG-1-like serine/thre 89.4 0.33 7.2E-06 51.2 3.5 124 276-408 147-283 (699)
48 PRK15386 type III secretion pr 88.4 0.54 1.2E-05 46.0 4.0 56 199-266 48-104 (426)
49 PLN03150 hypothetical protein; 88.3 0.48 1E-05 49.7 3.9 79 156-239 419-500 (623)
50 KOG1644 U2-associated snRNP A' 87.9 0.7 1.5E-05 40.3 3.9 58 154-213 63-123 (233)
51 PF13855 LRR_8: Leucine rich r 87.5 1.3 2.7E-05 30.5 4.5 53 131-186 2-57 (61)
52 PF12799 LRR_4: Leucine Rich r 87.4 0.3 6.4E-06 31.3 1.1 33 179-214 2-35 (44)
53 KOG0617 Ras suppressor protein 86.4 0.067 1.5E-06 45.1 -2.9 57 131-190 57-115 (264)
54 KOG4658 Apoptotic ATPase [Sign 85.6 0.16 3.4E-06 55.2 -1.5 59 154-214 544-606 (889)
55 KOG3864 Uncharacterized conser 84.9 0.67 1.4E-05 40.4 2.3 60 370-439 149-210 (221)
56 PF12799 LRR_4: Leucine Rich r 84.6 0.42 9.2E-06 30.6 0.7 34 156-190 2-37 (44)
57 COG4886 Leucine-rich repeat (L 84.0 0.37 8E-06 47.5 0.4 159 153-332 114-283 (394)
58 KOG2982 Uncharacterized conser 83.4 0.29 6.3E-06 45.1 -0.5 166 153-332 95-285 (418)
59 PRK15386 type III secretion pr 82.3 2.3 5E-05 41.8 5.0 133 130-286 52-186 (426)
60 KOG0274 Cdc4 and related F-box 82.2 0.62 1.3E-05 47.7 1.2 38 23-60 104-141 (537)
61 KOG1859 Leucine-rich repeat pr 81.1 2.1 4.5E-05 44.6 4.4 54 177-236 186-240 (1096)
62 PF13013 F-box-like_2: F-box-l 78.9 0.94 2E-05 35.4 1.0 30 26-55 21-50 (109)
63 KOG2739 Leucine-rich acidic nu 77.4 1.3 2.9E-05 40.0 1.6 14 345-358 136-149 (260)
64 KOG1644 U2-associated snRNP A' 77.2 5.8 0.00013 34.8 5.3 101 158-265 45-149 (233)
65 KOG1259 Nischarin, modulator o 76.1 1.5 3.2E-05 40.7 1.5 36 199-236 210-245 (490)
66 KOG3864 Uncharacterized conser 75.3 0.46 9.9E-06 41.4 -1.8 41 174-214 121-162 (221)
67 KOG2123 Uncharacterized conser 74.2 2.8 6E-05 38.6 2.7 57 300-358 34-94 (388)
68 PLN03150 hypothetical protein; 70.5 4.1 8.9E-05 42.8 3.5 82 179-267 419-501 (623)
69 KOG0472 Leucine-rich repeat pr 69.1 0.13 2.8E-06 49.3 -7.1 27 305-332 273-300 (565)
70 smart00367 LRR_CC Leucine-rich 68.0 2 4.3E-05 23.8 0.3 13 202-214 1-13 (26)
71 COG5238 RNA1 Ran GTPase-activa 61.2 14 0.00031 34.0 4.5 147 195-358 84-248 (388)
72 KOG0472 Leucine-rich repeat pr 49.1 1.6 3.5E-05 42.1 -3.6 27 386-412 514-540 (565)
73 COG4886 Leucine-rich repeat (L 48.5 7.9 0.00017 38.0 0.9 165 131-319 117-289 (394)
74 PF13516 LRR_6: Leucine Rich r 46.4 8.5 0.00019 20.6 0.5 12 202-213 1-12 (24)
75 PF13504 LRR_7: Leucine rich r 42.7 17 0.00037 17.8 1.2 8 156-163 2-9 (17)
76 KOG4658 Apoptotic ATPase [Sign 41.8 13 0.00029 40.6 1.5 65 146-213 561-628 (889)
77 PF00560 LRR_1: Leucine Rich R 39.5 23 0.00051 18.5 1.5 15 308-322 1-15 (22)
78 PF01827 FTH: FTH domain; Int 38.3 1.5E+02 0.0032 23.8 7.0 116 88-210 3-124 (142)
79 PF09372 PRANC: PRANC domain; 33.5 26 0.00057 26.6 1.6 25 25-49 70-94 (97)
80 PF13306 LRR_5: Leucine rich r 33.5 54 0.0012 25.8 3.5 61 148-211 4-66 (129)
81 KOG0531 Protein phosphatase 1, 31.3 25 0.00054 34.9 1.4 27 305-331 138-164 (414)
82 KOG0531 Protein phosphatase 1, 29.3 23 0.0005 35.1 0.8 55 154-213 94-150 (414)
83 KOG0532 Leucine-rich repeat (L 26.0 6.5 0.00014 39.9 -3.7 133 145-289 111-246 (722)
84 KOG4408 Putative Mg2+ and Co2+ 25.1 21 0.00045 33.7 -0.4 39 27-65 8-46 (386)
85 KOG4579 Leucine-rich repeat (L 23.3 13 0.00028 30.7 -1.8 56 154-213 52-110 (177)
86 PF08004 DUF1699: Protein of u 20.6 1E+02 0.0022 24.7 2.6 34 179-213 18-51 (131)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.1e-16 Score=140.67 Aligned_cols=218 Identities=20% Similarity=0.221 Sum_probs=139.3
Q ss_pred CCCCChHHHHHHhcCCCchhhhhhhccccchHHHhccC---CeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCCCc
Q 041388 27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAV---PNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNPAK 103 (440)
Q Consensus 27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~ 103 (440)
...|||||+..||+.|+.+++.+.+.|||||+++-..- ..+++.... ... + +...+.++ +
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~---------i~p----~-~l~~l~~r---g 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRN---------IHP----D-VLGRLLSR---G 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCc---------cCh----h-HHHHHHhC---C
Confidence 57899999999999999999999999999999753321 123332222 011 1 22233333 3
Q ss_pred eeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Ccccccccc
Q 041388 104 IGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVK 181 (440)
Q Consensus 104 v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~ 181 (440)
|..|++.-....+ ..++..... .+.+++++++....-....+-..+..|++|+.|+|. +..++++- ..+.-.+|+
T Consensus 161 V~v~Rlar~~~~~-prlae~~~~-frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE-g~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 161 VIVFRLARSFMDQ-PRLAEHFSP-FRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE-GLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred eEEEEcchhhhcC-chhhhhhhh-hhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc-ccccCcHHHHHHhccccce
Confidence 5555555322222 222222222 223688888865322222333445569999999999 88887764 234457899
Q ss_pred eEEEE-EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe--cccccceeEEEeecccccccccccEEEEecCC
Q 041388 182 ILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII--SSATLKTCKLIVRSEDMLFREVDYMLTITAPK 257 (440)
Q Consensus 182 ~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i--~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~ 257 (440)
.|+|. +. ++ +.+++.++++|..|.+|+|..|....-. ....+ .+++|+.|++. +|-+.-+......+.-.+|+
T Consensus 238 ~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNls-G~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 238 RLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLS-GYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred eeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhh-hhHhhhhhhHHHHHHHhCCc
Confidence 99999 54 66 8889999999999999999999531110 11122 35899999999 87322111112334456899
Q ss_pred ceEEEEeccc
Q 041388 258 LESLEIYSDL 267 (440)
Q Consensus 258 L~~L~~~~~~ 267 (440)
|..|+++++.
T Consensus 315 l~~LDLSD~v 324 (419)
T KOG2120|consen 315 LVHLDLSDSV 324 (419)
T ss_pred eeeecccccc
Confidence 9999998764
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.50 E-value=2e-16 Score=146.96 Aligned_cols=343 Identities=17% Similarity=0.178 Sum_probs=205.2
Q ss_pred cCC-CCChHHHHHHhcCCCchhhhhhhccccchHHH------hccCCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhc
Q 041388 26 RIS-SLPDSVLCHILSYIPTKHVVATSVIAKRWKNV------WTAVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLR 98 (440)
Q Consensus 26 ~is-~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 98 (440)
.++ .||.|++..|||+|+++++.+++.+|+-|..+ |..+.-..|..+. ...|-..+..
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv---------------~g~VV~~~~~ 134 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV---------------DGGVVENMIS 134 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC---------------CCcceehHhh
Confidence 344 59999999999999999999999999999865 4333322222211 1223334445
Q ss_pred CCCCceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccc-cccccEEEecCCccccCCC---Cc
Q 041388 99 TNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYS-AACLKVLTLDSDFSIQVPS---SG 174 (440)
Q Consensus 99 ~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~l~~~~---~~ 174 (440)
+.|+.+++++++.........+...... -+++++|.+..+.......-..+.. |++|++|.|.+|..+++.. .+
T Consensus 135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred hhccccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 5566899999998776543333322211 1377888776543211111222323 8888888888655555532 24
Q ss_pred ccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE-e--cccccceeEEEeeccccccccccc
Q 041388 175 TCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI-I--SSATLKTCKLIVRSEDMLFREVDY 249 (440)
Q Consensus 175 ~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~-i--~~~~L~~L~i~~~~~~~~~~~~~~ 249 (440)
.+|++|+.|+++ +. ++ +.+++.+..+|..|+.+.+++|..... +.+. + ..+-+.++++. .|..+ -+....
T Consensus 213 ~gC~kL~~lNlSwc~qi~-~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~-~c~~l-TD~~~~ 287 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQIS-GNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQ-HCNQL-TDEDLW 287 (483)
T ss_pred HhhhhHHHhhhccCchhh-cCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchh-hhccc-cchHHH
Confidence 578889999988 44 45 677888888888888888888854222 2221 1 22345555555 55111 001111
Q ss_pred EEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccc------eeEee
Q 041388 250 MLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGI------MSSVE 323 (440)
Q Consensus 250 ~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~------~~~~~ 323 (440)
.+.-.+-.|+.+.++++... .+ ... ..+.+++++|+.|.+.... .+.+.
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~----------~d-------------~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDI----------TD-------------EVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred HHhhhhhHhhhhcccCCCCC----------ch-------------HHH--HHHhcCCCceEEEeccccchhhhhhhhhhh
Confidence 22223455666666543210 00 000 5556666777777664321 11111
Q ss_pred -ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccC-----C---CCCccccccceeEEEEEeeecCcchHHHH
Q 041388 324 -LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLES-----D---FDVPHCLVHTVKNIEIKGVQGDEDERPLL 392 (440)
Q Consensus 324 -~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~-----~---~~~~~c~~~~L~~v~i~~~~~~~~~~~~~ 392 (440)
.+..|+.|. +-+ .......+.++-.+||.|++|+ ..|. + .....|.+.+|+.+++.+...... +..
T Consensus 343 rn~~~Le~l~~e~~-~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~L 419 (483)
T KOG4341|consen 343 RNCPHLERLDLEEC-GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATL 419 (483)
T ss_pred cCChhhhhhccccc-ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHH
Confidence 455555555 333 1233346899999999999999 5332 2 234468889999999998876544 233
Q ss_pred HHHHhhccccceEEEEeecCCChhhHH
Q 041388 393 KYLLQFAAAMEKMLMWAKASVPKENRA 419 (440)
Q Consensus 393 ~~ll~~a~~L~~m~i~~~~~~~~~~~~ 419 (440)
++ +.++++||++.++......++...
T Consensus 420 e~-l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 420 EH-LSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred HH-HhhCcccceeeeechhhhhhhhhH
Confidence 33 457899999999988876665443
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.45 E-value=2.7e-13 Score=99.04 Aligned_cols=72 Identities=32% Similarity=0.587 Sum_probs=64.8
Q ss_pred cccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeecCCChhhHHHHHHHHhcccCcCCcceEEeC
Q 041388 368 HCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKASVPKENRANLRESILQLPRASMKTTIEIK 440 (440)
Q Consensus 368 ~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~l~~~~r~s~~~~i~~~ 440 (440)
+|+.+||+.|+|.+|.|..+|+++++||++||+.||+|+|..+....++... +.++|..++|||++|+|.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~-i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLE-ILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHH-HHHHHHhCcCCCCceEEEeC
Confidence 4888999999999999999999999999999999999999998765544444 88999999999999999984
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.05 E-value=2.3e-10 Score=76.73 Aligned_cols=45 Identities=40% Similarity=0.706 Sum_probs=43.2
Q ss_pred CCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388 364 FDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW 408 (440)
Q Consensus 364 ~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~ 408 (440)
..+|+|+.+||+.|++.||.|.++|+++++|+++||+.||+|+|.
T Consensus 6 ~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 6 SSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 568999999999999999999999999999999999999999986
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.68 E-value=1.1e-08 Score=67.75 Aligned_cols=35 Identities=37% Similarity=0.815 Sum_probs=31.0
Q ss_pred CCCCChHHHHHHhcCCCchhhhhhhccccchHHHh
Q 041388 27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVW 61 (440)
Q Consensus 27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw 61 (440)
|+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.30 E-value=1.3e-06 Score=96.48 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=82.2
Q ss_pred CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 130 REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
..++.|++..+. -...+|..++ .+++|++|+|+++......| ...+++|++|+|. +.+. ..+...+..++.|+.
T Consensus 93 ~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~--~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLS--GEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCccc--ccCChHHhcCCCCCE
Confidence 367777775322 1236777777 58888888888433222333 4567888888888 7665 234445677888888
Q ss_pred EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEE
Q 041388 208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKL 284 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i 284 (440)
|+|.+|...+..+.. --..++|+.|.+. +| .+........-..++|+.|.++++.... ..+.++++|+.+++
T Consensus 169 L~L~~n~l~~~~p~~-~~~l~~L~~L~L~-~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 169 LDLGGNVLVGKIPNS-LTNLTSLEFLTLA-SN---QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred EECccCcccccCChh-hhhCcCCCeeecc-CC---CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 888876432110011 1134677778777 55 2210000011234566666666543221 12345666666666
Q ss_pred EEe
Q 041388 285 DIM 287 (440)
Q Consensus 285 ~~~ 287 (440)
...
T Consensus 244 ~~n 246 (968)
T PLN00113 244 VYN 246 (968)
T ss_pred cCc
Confidence 443
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.20 E-value=3.4e-07 Score=60.81 Aligned_cols=37 Identities=38% Similarity=0.782 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc
Q 041388 27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA 63 (440)
Q Consensus 27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~ 63 (440)
+++||+|++.+|+++|+.+|.++.+.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5679999999999999999999999999999987654
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.10 E-value=1.5e-06 Score=55.51 Aligned_cols=33 Identities=33% Similarity=0.731 Sum_probs=31.2
Q ss_pred CChHHHHHHhcCCCchhhhhhhccccchHHHhc
Q 041388 30 LPDSVLCHILSYIPTKHVVATSVIAKRWKNVWT 62 (440)
Q Consensus 30 LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~ 62 (440)
||+|++.+|+++|+.+|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998764
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.10 E-value=4.8e-06 Score=92.94 Aligned_cols=13 Identities=8% Similarity=0.394 Sum_probs=7.1
Q ss_pred ccceeEEEEEeee
Q 041388 371 VHTVKNIEIKGVQ 383 (440)
Q Consensus 371 ~~~L~~v~i~~~~ 383 (440)
..+|+.+.+.++.
T Consensus 868 l~~L~~L~L~~C~ 880 (1153)
T PLN03210 868 FSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCCEEECCCCC
Confidence 3456666665543
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.93 E-value=1.6e-05 Score=87.90 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=40.1
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
+++.|++..+. ....+|..+..+++|++|+|.++..... |.....+++|+.|+|. ..+. ..+...+..++.|+.|
T Consensus 165 ~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 165 SLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS--GEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC--CcCChhHhcCCCCCEE
Confidence 66677664321 1124555555666666666663322222 2223445566666666 5544 1222334555566666
Q ss_pred EEeee
Q 041388 209 SVTCE 213 (440)
Q Consensus 209 ~L~~c 213 (440)
++.+|
T Consensus 242 ~L~~n 246 (968)
T PLN00113 242 DLVYN 246 (968)
T ss_pred ECcCc
Confidence 65554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.76 E-value=7.2e-06 Score=80.55 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=58.2
Q ss_pred eeecCccccc-cccccEEEecCCccccCC--CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCC
Q 041388 144 RVELPEAIYS-AACLKVLTLDSDFSIQVP--SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTP 219 (440)
Q Consensus 144 ~~~lp~~l~~-~~~L~~L~L~~~~~l~~~--~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~ 219 (440)
...+|..+|+ .+.|+.|+|. .-.+... -.+.++++|+.|.|. ..+. .--+.++-+|..+|+|+|.......+.
T Consensus 209 ittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqrN~I~--kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQRNDIS--KLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred ccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhhcCcc--cccCcceeeecccceeecccchhhhhh
Confidence 4566666666 6777777776 3233222 125566777777777 5443 111123346777777777664321110
Q ss_pred CCcEEecccccceeEEEeecccccccccccEEEEe----cCCceEEEEeccc
Q 041388 220 PPNLIISSATLKTCKLIVRSEDMLFREVDYMLTIT----APKLESLEIYSDL 267 (440)
Q Consensus 220 ~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~----~p~L~~L~~~~~~ 267 (440)
.++ -..-..|+.|+++ .+ . .+.+.++ +|+|+.|.++.+.
T Consensus 286 ~g~-lfgLt~L~~L~lS-~N---a----I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 286 EGW-LFGLTSLEQLDLS-YN---A----IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred ccc-ccccchhhhhccc-hh---h----hheeecchhhhcccceeEeccccc
Confidence 000 1123456667666 33 1 2444443 5777777776543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.57 E-value=0.00028 Score=79.02 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=24.0
Q ss_pred cccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 156 CLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 156 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+|+.|.+. ...+...|....+.+|+.|+|. ..+. . +..-+..++.|+.|+|.+|
T Consensus 590 ~Lr~L~~~-~~~l~~lP~~f~~~~L~~L~L~~s~l~-~--L~~~~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 590 KLRLLRWD-KYPLRCMPSNFRPENLVKLQMQGSKLE-K--LWDGVHSLTGLRNIDLRGS 644 (1153)
T ss_pred ccEEEEec-CCCCCCCCCcCCccCCcEEECcCcccc-c--cccccccCCCCCEEECCCC
Confidence 45555554 2222222222334556666665 4433 1 1111334566666666554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.54 E-value=4.7e-05 Score=75.03 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=62.4
Q ss_pred ecCccccc-cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 146 ELPEAIYS-AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 146 ~lp~~l~~-~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
++|..-|. ..++++|.|. .-+++... .+.+|.+|.+|.|. .+++ . -=...+++.|.||.|.|......-+ +
T Consensus 163 ~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrit-t-Lp~r~Fk~L~~L~~LdLnrN~iriv--e 237 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRIT-T-LPQRSFKRLPKLESLDLNRNRIRIV--E 237 (873)
T ss_pred cccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCccc-c-cCHHHhhhcchhhhhhccccceeee--h
Confidence 44444444 4678888888 44444432 46677788888888 7776 2 2245677788888888877432111 2
Q ss_pred cEEec-ccccceeEEEeecccccccccccEEEEecCCceEEEEecc
Q 041388 222 NLIIS-SATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSD 266 (440)
Q Consensus 222 ~l~i~-~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~ 266 (440)
.+... -++|+.|.+. .+ +++.-....-..+-+++.|.+..+
T Consensus 238 ~ltFqgL~Sl~nlklq-rN---~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQ-RN---DISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred hhhhcCchhhhhhhhh-hc---CcccccCcceeeecccceeecccc
Confidence 22222 3677777776 44 222111222233455666666443
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.38 E-value=6e-05 Score=69.81 Aligned_cols=256 Identities=18% Similarity=0.111 Sum_probs=131.2
Q ss_pred HHHHHHHhcCCCCceeeEEEEeeCCCChhhHHHHHHHHHcC--CcEEEEEEE-ccC-ceeecCccccccccccEEEecCC
Q 041388 90 DFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMR--EVGEIQLYL-GQQ-SRVELPEAIYSAACLKVLTLDSD 165 (440)
Q Consensus 90 ~~v~~~L~~~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~--~l~~L~l~~-~~~-~~~~lp~~l~~~~~L~~L~L~~~ 165 (440)
.-|-..+.... .+.++.++. ..-..-.++|+..+.++ .+++.++.- ..+ ...++|..+ +.|
T Consensus 20 ~~v~~~~~~~~--s~~~l~lsg--nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L------~~l----- 84 (382)
T KOG1909|consen 20 KDVEEELEPMD--SLTKLDLSG--NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL------KML----- 84 (382)
T ss_pred hhHHHHhcccC--ceEEEeccC--CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH------HHH-----
Confidence 34555555544 377766663 33366678999888873 233333321 111 122333311 000
Q ss_pred ccccCCCCcccccccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccc
Q 041388 166 FSIQVPSSGTCFPCVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDM 242 (440)
Q Consensus 166 ~~l~~~~~~~~~~~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~ 242 (440)
.+...++|.|++|+|+ ..+. +-..+..++++|..|++|.|.+|...... + ..-+..|..|..
T Consensus 85 -----~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g--~~l~~al~~l~~------- 149 (382)
T KOG1909|consen 85 -----SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA-G--GRLGRALFELAV------- 149 (382)
T ss_pred -----HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH-H--HHHHHHHHHHHH-------
Confidence 0013345667777777 5554 23568999999999999999999321100 0 000111111110
Q ss_pred cccccccEEEEecCCceEEEEeccccccE-------EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEe
Q 041388 243 LFREVDYMLTITAPKLESLEIYSDLLGSF-------VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLS 315 (440)
Q Consensus 243 ~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~ 315 (440)
....-+.|+|+.|.+..+..... .+...|.|.++.+.......... .....-++.+++++.|+|.
T Consensus 150 ------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 150 ------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLR 221 (382)
T ss_pred ------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecc
Confidence 11122345566655543322211 12334666666654433321001 0014556789999999998
Q ss_pred ccceeEee---------ecccccccc-ccc--ccchhHHHHHHHhccCCCccccc-cccC-C----CCCcccc--cccee
Q 041388 316 AGIMSSVE---------LHRNGGRTD-RMA--STANRAKKLTELGKSCPAQEQFG-WLES-D----FDVPHCL--VHTVK 375 (440)
Q Consensus 316 ~~~~~~~~---------~f~~L~~L~-~~~--~~~~~~~~l~~lL~~~p~L~~L~-~~~~-~----~~~~~c~--~~~L~ 375 (440)
.+++..-. .|++|+.|. ..| ........+..+-+..|+|+.|. ..+. . .....|. ..+|+
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 88665321 566666666 444 12333445566777789999998 5421 1 1111222 45677
Q ss_pred EEEEEeee
Q 041388 376 NIEIKGVQ 383 (440)
Q Consensus 376 ~v~i~~~~ 383 (440)
.+.+.|.+
T Consensus 302 kLnLngN~ 309 (382)
T KOG1909|consen 302 KLNLNGNR 309 (382)
T ss_pred HhcCCccc
Confidence 77777654
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.34 E-value=2.8e-05 Score=74.29 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=19.5
Q ss_pred cceeEEEEEeeecC-cchHHHHHHHHhhccccceEEEEeec
Q 041388 372 HTVKNIEIKGVQGD-EDERPLLKYLLQFAAAMEKMLMWAKA 411 (440)
Q Consensus 372 ~~L~~v~i~~~~~~-~~~~~~~~~ll~~a~~L~~m~i~~~~ 411 (440)
..|+++.+.+..-. .....++++ +.+.+.|+.+.+....
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCC
Confidence 45666666654422 222333343 3333667777665533
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.32 E-value=3.3e-06 Score=79.71 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=26.6
Q ss_pred cccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
|+++++|.+.++..+++.. .+..++.|+.|.|. +..-++..+..+..+||+|++|.+..|
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 5555555555443333322 12234445555555 332224444444455555555555554
No 17
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.31 E-value=0.0002 Score=40.23 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.8
Q ss_pred ccceEEEE-EEeCCCcchhhhhccCC
Q 041388 179 CVKILSVR-LENPNKSVTENLFCSCP 203 (440)
Q Consensus 179 ~L~~L~L~-~~~~~~~~l~~lls~cp 203 (440)
+||+|+|. |.+.++..++.++|+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999 99986678999999998
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=6.1e-05 Score=68.36 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=96.4
Q ss_pred ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceee-cCccccccccccEEEecCCccccCCCC---cc-cc
Q 041388 103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVE-LPEAIYSAACLKVLTLDSDFSIQVPSS---GT-CF 177 (440)
Q Consensus 103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~-lp~~l~~~~~L~~L~L~~~~~l~~~~~---~~-~~ 177 (440)
.++.+++..-.-. +++. ...|-.++++++++..+.+.... +-..+.+|+.|..|+|+ +|.+..+.. .. --
T Consensus 211 kLk~lSlEg~~Ld--D~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls-Wc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 211 KLKNLSLEGLRLD--DPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS-WCFLFTEKVTVAVAHIS 285 (419)
T ss_pred hhhhccccccccC--cHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCch-HhhccchhhhHHHhhhc
Confidence 4666666543322 2221 22334458999998766543222 22233459999999999 666544320 11 13
Q ss_pred cccceEEEE-E-EeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE--ecccccceeEEEeecccccccccccEEEE
Q 041388 178 PCVKILSVR-L-ENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI--ISSATLKTCKLIVRSEDMLFREVDYMLTI 253 (440)
Q Consensus 178 ~~L~~L~L~-~-~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~--i~~~~L~~L~i~~~~~~~~~~~~~~~l~~ 253 (440)
+.|+.|+|+ + +.-.+..+..+...||.|-+|+|.+|..-.- ..+. ...+.|++|.+. .|+ ++.+ ...+.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSls-RCY--~i~p-~~~~~l 359 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLS-RCY--DIIP-ETLLEL 359 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehh-hhc--CCCh-HHeeee
Confidence 789999999 3 3333678889999999999999999854111 2222 245889999998 882 2322 233333
Q ss_pred -ecCCceEEEEecccc
Q 041388 254 -TAPKLESLEIYSDLL 268 (440)
Q Consensus 254 -~~p~L~~L~~~~~~~ 268 (440)
..|.|.+|.+.|+..
T Consensus 360 ~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccCcceEEEEeccccC
Confidence 478888888877643
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.12 E-value=0.00028 Score=67.34 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=140.0
Q ss_pred ccccccEEEecCCccccCC------CCcccccccceEEEE-EEeCC-Ccc---hhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 153 SAACLKVLTLDSDFSIQVP------SSGTCFPCVKILSVR-LENPN-KSV---TENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~------~~~~~~~~L~~L~L~-~~~~~-~~~---l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
....|+.|.+. ++.+... .....+++|++|.+. ..+.. ... +...+..++.|+.|.|.+|........
T Consensus 21 ~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLE-GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeec-CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 36679999999 5555321 123456779999998 66541 122 234556688999999999854211001
Q ss_pred cEE--ecccccceeEEEeecccccccc-cccEE---EEec-CCceEEEEecccccc-------EEeeCCCCeeEEEEEEe
Q 041388 222 NLI--ISSATLKTCKLIVRSEDMLFRE-VDYML---TITA-PKLESLEIYSDLLGS-------FVMHDLHSLKIVKLDIM 287 (440)
Q Consensus 222 ~l~--i~~~~L~~L~i~~~~~~~~~~~-~~~~l---~~~~-p~L~~L~~~~~~~~~-------~~~~~~~~L~~~~i~~~ 287 (440)
.+. ..+++|++|.+. +| .+.. +...+ .... |+|+.|.++++.... ..+..+++|+.+++..+
T Consensus 100 ~~~~l~~~~~L~~L~ls-~~---~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 100 VLESLLRSSSLQELKLN-NN---GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHhccCcccEEEee-CC---ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 110 011559999998 76 2210 00111 1123 899999998765431 12345567888877654
Q ss_pred ecccccCCchhh-hhhhcccccccEEEEeccceeEee---------ecccccccc-cccccchhHHHHHHHhcc----CC
Q 041388 288 HAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE---------LHRNGGRTD-RMASTANRAKKLTELGKS----CP 352 (440)
Q Consensus 288 ~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~---------~f~~L~~L~-~~~~~~~~~~~l~~lL~~----~p 352 (440)
.... ..... ...+..+++++.|.++...+.... .+++|++|+ ..+ ......+..+... .+
T Consensus 176 ~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 176 GIGD---AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAGAAALASALLSPNI 250 (319)
T ss_pred CCch---HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHHHHHHHHHHhccCC
Confidence 3211 00011 233445579999999876553211 455677776 433 3333344444444 47
Q ss_pred Cccccc-cccC----C-CCCcccc--ccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEee
Q 041388 353 AQEQFG-WLES----D-FDVPHCL--VHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWAK 410 (440)
Q Consensus 353 ~L~~L~-~~~~----~-~~~~~c~--~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~~ 410 (440)
.|++|. ..|. + ....+.. ..+|+.+.+.+-. +.+....+++-+..+.+.|+.+.|...
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 888888 4331 1 1111111 2568888776433 344456788888888888888877543
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.00 E-value=2.6e-05 Score=77.37 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=39.7
Q ss_pred ceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEee
Q 041388 143 SRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTC 212 (440)
Q Consensus 143 ~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~ 212 (440)
....+|..+..|.+|.+|.+.++.......-...+|+|+.+.++ ..+. ..++..=+-...-|..|+|+.
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK-nsGiP~diF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK-NSGIPTDIFRLKDLTILDLSH 112 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc-cCCCCchhcccccceeeecch
Confidence 34667777777888888888744333333335567778877777 6665 333333233333444444433
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=3.9e-05 Score=73.00 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=72.1
Q ss_pred ccccccccEEEecCCccccC---CCCcccccccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCC--CCCCCc
Q 041388 151 IYSAACLKVLTLDSDFSIQV---PSSGTCFPCVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHD--DTPPPN 222 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~--~~~~~~ 222 (440)
+-.|++++.|+|+++.--.. ......+|+|+.|+|+ ..+. .+..... ..++|+.|.|..|... ++ .+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V--~~ 216 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDV--QW 216 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHH--HH
Confidence 33467777777763221111 1123456777777777 5543 1111111 4566667777776321 11 22
Q ss_pred EEecccccceeEEEeecccccccccccEEEE-ecCCceEEEEecccccc----EEeeCCCCeeEEEEEEeecccccCCch
Q 041388 223 LIISSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKLESLEIYSDLLGS----FVMHDLHSLKIVKLDIMHAEWAQVDPY 297 (440)
Q Consensus 223 l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L~~L~~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~ 297 (440)
+....|+|+.|.+. .+... + ...... ....|+.|+++++.... +....+|.|..+.+..+.... ...+.
T Consensus 217 ~~~~fPsl~~L~L~-~N~~~-~---~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s-i~~~d 290 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLE-ANEII-L---IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS-IAEPD 290 (505)
T ss_pred HHHhCCcHHHhhhh-ccccc-c---eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcch-hcCCC
Confidence 33455677777666 33100 0 000000 12356667766654322 234556666655554443321 11110
Q ss_pred hh-hhhhcccccccEEEEecccee
Q 041388 298 RA-IQLLAGINSCKYLYLSAGIMS 320 (440)
Q Consensus 298 ~~-~~~l~~~~~l~~L~l~~~~~~ 320 (440)
.. ..-...++.++.|.+..+.+.
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccchhhhcccccceeeecccCccc
Confidence 00 222334566666666655443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0003 Score=67.11 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=114.5
Q ss_pred CcEEEEEEEccCce-eecCccccccccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 131 EVGEIQLYLGQQSR-VELPEAIYSAACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 131 ~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
++++|++...--.. ..+-..+-..++|+.|+|+ .-++..+. ....+++||+|.|. |.++ .++++.++..||.|
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSL 224 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcH
Confidence 67777774311000 1111122236889999999 44454443 12368999999999 9999 89999999999999
Q ss_pred ceEEEeeeeCCCCCCCcEEe---cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEe---------
Q 041388 206 EELSVTCELHDDTPPPNLII---SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVM--------- 273 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~i---~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~--------- 273 (440)
+.|.|.... .. ..-.. ...+|+.|++. +.-.+.+ +.....-..|+|+.|.++.+...++-.
T Consensus 225 ~~L~L~~N~--~~--~~~~~~~~i~~~L~~LdLs-~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 225 EVLYLEANE--II--LIKATSTKILQTLQELDLS-NNNLIDF--DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred HHhhhhccc--cc--ceecchhhhhhHHhhcccc-CCccccc--ccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 999998852 12 11111 23689999998 6522222 223445567899999887665444322
Q ss_pred eCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee---------Eeeecccccccc
Q 041388 274 HDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS---------SVELHRNGGRTD 332 (440)
Q Consensus 274 ~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~---------~~~~f~~L~~L~ 332 (440)
..+|+|+.+.+....... +.. .+-+..+++++.|.+..+++. ++..++.|..|.
T Consensus 298 ~~f~kL~~L~i~~N~I~~-w~s----l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN 360 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRD-WRS----LNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLN 360 (505)
T ss_pred cccccceeeecccCcccc-ccc----cchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhc
Confidence 446788877776554421 000 233445566777776555332 233666666666
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.00015 Score=73.27 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=68.2
Q ss_pred CcEEEEEEEccCce-eecCccccccccccEEEecCCc-cccCC-----CCcccccccceEEEE-EE-eCCCcchhhhhcc
Q 041388 131 EVGEIQLYLGQQSR-VELPEAIYSAACLKVLTLDSDF-SIQVP-----SSGTCFPCVKILSVR-LE-NPNKSVTENLFCS 201 (440)
Q Consensus 131 ~l~~L~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~~~-~l~~~-----~~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~ 201 (440)
+++++.+..++... ..+-.....|+.|+.|++++++ ..... .....+++|+.|++. +. ++ |..+..+...
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~~l~~~ 267 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLSALASR 267 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHHHHHhh
Confidence 55555554433211 1122333457788888887421 11111 123355778888888 66 55 7777777777
Q ss_pred CCCcceEEEeeeeC-CCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEe
Q 041388 202 CPSLEELSVTCELH-DDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIY 264 (440)
Q Consensus 202 cp~Le~L~L~~c~~-~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~ 264 (440)
||.||.|.+.+|.. .+.....+.-.+++|++|.+. .|... -+.+...+...+|+|+.|.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~-~c~~~-~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLS-GCHGL-TDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeee-cCccc-hHHHHHHHHHhCcchhhhhhh
Confidence 88888888777752 111001222245777777777 66221 011122223345556555543
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.27 E-value=0.0028 Score=54.44 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=18.8
Q ss_pred hhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388 301 QLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 301 ~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..++.+++++.|++.++.+. .....=..++..+|+|+.|.
T Consensus 107 ~~L~~l~~L~~L~L~~NPv~------------------~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 107 EPLSSLPKLRVLSLEGNPVC------------------EKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp GGGGG-TT--EEE-TT-GGG------------------GSTTHHHHHHHH-TT-SEET
T ss_pred HHHHcCCCcceeeccCCccc------------------chhhHHHHHHHHcChhheeC
Confidence 34556666666666544321 11223445777889999988
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.19 E-value=0.0044 Score=65.61 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=58.3
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+..+|.+... ....+|..+. ++|+.|+|. +..+...| ..-+++|++|+|. +.+. . +..- -.+.|+.|.
T Consensus 179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls-~N~LtsLP-~~l~~nL~~L~Ls~N~Lt-s--LP~~--l~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKIL--GLTTIPACIP--EQITTLILD-NNELKSLP-ENLQGNIKTLYANSNQLT-S--IPAT--LPDTIQEME 247 (754)
T ss_pred CceEEEeCCC--CcCcCCcccc--cCCcEEEec-CCCCCcCC-hhhccCCCEEECCCCccc-c--CChh--hhccccEEE
Confidence 4555555321 2334555432 467888888 34444444 2234678888888 6654 1 1111 124677777
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEe-cCCceEEEEecccc
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTIT-APKLESLEIYSDLL 268 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~-~p~L~~L~~~~~~~ 268 (440)
|.+|....++ .. + ..+|+.|.+. ++ .+. .+.-. .++|+.|.++++..
T Consensus 248 Ls~N~L~~LP-~~--l-~s~L~~L~Ls-~N---~L~----~LP~~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 248 LSINRITELP-ER--L-PSALQSLDLF-HN---KIS----CLPENLPEELRYLSVYDNSI 295 (754)
T ss_pred CcCCccCcCC-hh--H-hCCCCEEECc-CC---ccC----ccccccCCCCcEEECCCCcc
Confidence 7776432221 11 1 2467777776 44 221 11111 24677777766543
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.84 E-value=0.0054 Score=64.34 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=44.7
Q ss_pred cccccEEEecCCccccC-CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeC
Q 041388 154 AACLKVLTLDSDFSIQV-PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELH 215 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~ 215 (440)
-.+|++|+++|.-.+.. .+ ....||+|++|.+. ..+. .+++..+..++|+|..|+|+++..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-NDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-chhHHHHhhccCccceeecCCCCc
Confidence 35778888875322211 11 23469999999999 8888 566889999999999999999743
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.66 E-value=0.0055 Score=42.62 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=35.3
Q ss_pred ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
++|++|.+.++ .+...+ .+.++++|++|++. ..+. ..-...+.++|.|++|.+.++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLT--SIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSES--EEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccC--ccCHHHHcCCCCCCEEeCcCC
Confidence 46777777743 443322 34567788888887 5554 222345677888888888765
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.48 E-value=0.0075 Score=51.86 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=23.4
Q ss_pred CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
++++|++.... ..--..+. .+.+|+.|+|+ +..+........++.|++|.+. ..+. +-. ..+...||.|++|
T Consensus 20 ~~~~L~L~~n~---I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~l~~L~~L~~L~L~~N~I~-~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQ---ISTIENLGATLDKLEVLDLS-NNQITKLEGLPGLPRLKTLDLSNNRIS-SIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-T-TS--S--TT----TT--EEE--SS----S-C-HHHHHH-TT--EE
T ss_pred ccccccccccc---cccccchhhhhcCCCEEECC-CCCCccccCccChhhhhhcccCCCCCC-ccc-cchHHhCCcCCEE
Confidence 45566664321 11112344 36788889998 5555555546678889999999 7776 211 2334578999999
Q ss_pred EEeeeeC
Q 041388 209 SVTCELH 215 (440)
Q Consensus 209 ~L~~c~~ 215 (440)
.+.+...
T Consensus 94 ~L~~N~I 100 (175)
T PF14580_consen 94 YLSNNKI 100 (175)
T ss_dssp E-TTS--
T ss_pred ECcCCcC
Confidence 9877543
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.006 Score=55.75 Aligned_cols=228 Identities=13% Similarity=0.166 Sum_probs=126.6
Q ss_pred cccEEEecCCccccCCC----CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCC-CCCCcEEecccc
Q 041388 156 CLKVLTLDSDFSIQVPS----SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDD-TPPPNLIISSAT 229 (440)
Q Consensus 156 ~L~~L~L~~~~~l~~~~----~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~-~~~~~l~i~~~~ 229 (440)
-+.-|.+. ++.++... .......++.|+|. ..+++-..+..++...|+|+.|+|....... + ..+.....+
T Consensus 46 a~ellvln-~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLN-GSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKN 122 (418)
T ss_pred chhhheec-CCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccc
Confidence 44455566 55554433 12356789999999 8888667889999999999999998753211 1 222234467
Q ss_pred cceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEee-CC-----CCeeEEEEEEeecccccCCchhh-hhh
Q 041388 230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMH-DL-----HSLKIVKLDIMHAEWAQVDPYRA-IQL 302 (440)
Q Consensus 230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~-~~-----~~L~~~~i~~~~~~~~~~~~~~~-~~~ 302 (440)
|++|.+. +. ...+.. ..+..-+.|.++.|+++.+....+-+. ++ +.+..+....|.. ....+ ..+
T Consensus 123 l~~lVLN-gT-~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-----~~w~~~~~l 194 (418)
T KOG2982|consen 123 LRVLVLN-GT-GLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-----QLWLNKNKL 194 (418)
T ss_pred eEEEEEc-CC-CCChhh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH-----HHHHHHHhH
Confidence 8888886 54 222311 233444578888888776533322110 00 0111111111100 00112 566
Q ss_pred hcccccccEEEEeccceeEee------ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCC-CC-----Ccc
Q 041388 303 LAGINSCKYLYLSAGIMSSVE------LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESD-FD-----VPH 368 (440)
Q Consensus 303 l~~~~~l~~L~l~~~~~~~~~------~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~-----~~~ 368 (440)
-+-++++..+.++...++... +|+.+.-|. .-. .-.+|+.+- -|..+|.|..|. . +.+ .+ .+.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~-~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVS-ENPLSDPLRGGERR 271 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHH-HHcCCchhheeecc-CCcccccccCCcce
Confidence 778999999999888777655 555555554 322 133555544 356688888888 3 223 11 111
Q ss_pred c-cccceeEEEEEe---ee---cCcchHHHHHHHHh
Q 041388 369 C-LVHTVKNIEIKG---VQ---GDEDERPLLKYLLQ 397 (440)
Q Consensus 369 c-~~~~L~~v~i~~---~~---~~~~~~~~~~~ll~ 397 (440)
. +...|..|++-+ .. ..+.|..+++|-.+
T Consensus 272 ~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred EEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 1 234466666642 11 22457788887654
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.42 E-value=0.035 Score=58.91 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=58.5
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+-..|++... ....+|..+. ++|+.|.+. ...+...| ...++|++|+|. ..+. . +.. ..+.|+.|.
T Consensus 202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~-~N~Lt~LP--~lp~~Lk~LdLs~N~Lt-s--LP~---lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGES--GLTTLPDCLP--AHITTLVIP-DNNLTSLP--ALPPELRTLEVSGNQLT-S--LPV---LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCC--CCCcCCcchh--cCCCEEEcc-CCcCCCCC--CCCCCCcEEEecCCccC-c--ccC---cccccceee
Confidence 4444544322 2345676554 368888888 34444433 124778888888 7665 2 111 236777777
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccc
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDL 267 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~ 267 (440)
+.++....+ .-..++|+.|.+. ++ .+ ..+....|+|+.|.++++.
T Consensus 269 Ls~N~L~~L-----p~lp~~L~~L~Ls-~N---~L----t~LP~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 269 IFSNPLTHL-----PALPSGLCKLWIF-GN---QL----TSLPVLPPGLQELSVSDNQ 313 (788)
T ss_pred ccCCchhhh-----hhchhhcCEEECc-CC---cc----ccccccccccceeECCCCc
Confidence 776532221 1122456666666 44 22 2222234567777776553
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.41 E-value=0.0028 Score=59.08 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=96.0
Q ss_pred hhhhhccCCCcceEEEeeeeC-CCCC--CCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE
Q 041388 195 TENLFCSCPSLEELSVTCELH-DDTP--PPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF 271 (440)
Q Consensus 195 l~~lls~cp~Le~L~L~~c~~-~~~~--~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~ 271 (440)
+...+-+||.|+.|+|++... +... ...+--++.+|++|.+. +| ++....... -+-.|..|.+. -
T Consensus 84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~---Glg~~ag~~--l~~al~~l~~~------k 151 (382)
T KOG1909|consen 84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NC---GLGPEAGGR--LGRALFELAVN------K 151 (382)
T ss_pred HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cC---CCChhHHHH--HHHHHHHHHHH------h
Confidence 455566899999999998631 1110 01122246789999998 88 332111000 00112222211 1
Q ss_pred EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccC
Q 041388 272 VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSC 351 (440)
Q Consensus 272 ~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~ 351 (440)
...+.|.|+.+...-..... .........++..+.++.+.+..+++. ......+..-+..|
T Consensus 152 k~~~~~~Lrv~i~~rNrlen--~ga~~~A~~~~~~~~leevr~~qN~I~-----------------~eG~~al~eal~~~ 212 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLEN--GGATALAEAFQSHPTLEEVRLSQNGIR-----------------PEGVTALAEALEHC 212 (382)
T ss_pred ccCCCcceEEEEeecccccc--ccHHHHHHHHHhccccceEEEeccccc-----------------CchhHHHHHHHHhC
Confidence 12344555544433222211 111011456677788999988776553 22334566666777
Q ss_pred CCccccc-cccC----C---CCCccccccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEe
Q 041388 352 PAQEQFG-WLES----D---FDVPHCLVHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWA 409 (440)
Q Consensus 352 p~L~~L~-~~~~----~---~~~~~c~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~ 409 (440)
|+|+.|. +-+. + ....-|...||+++.+..|- -.....++++.+-+.+|.|+.+.+-+
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence 7777776 2110 1 11123445567777776554 34455677777777777777776654
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.39 E-value=0.00061 Score=67.97 Aligned_cols=194 Identities=16% Similarity=0.134 Sum_probs=91.1
Q ss_pred eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCc
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPN 222 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~ 222 (440)
.-+|..+|....|+.|+|+ .-.+...| ....-.++-.|+|+ ..+. ..=..++-+..-|-.|+|++.+.+.++ ..
T Consensus 93 sGiP~diF~l~dLt~lDLS-hNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~NrLe~LP-PQ 168 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLS-HNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNRLEMLP-PQ 168 (1255)
T ss_pred CCCCchhcccccceeeecc-hhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccchhhhcC-HH
Confidence 4567778888888888888 43444433 34445677778887 5553 222333444455556666664322221 00
Q ss_pred EEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccc----cEEeeCCCCeeEEEEEEeecccccCCchh
Q 041388 223 LIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG----SFVMHDLHSLKIVKLDIMHAEWAQVDPYR 298 (440)
Q Consensus 223 l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~ 298 (440)
+ -.-..|++|.++ ++.-..+ + ..+ .-+..+|+.|++++..-. ...+.++.+|.+++++..... ..
T Consensus 169 ~-RRL~~LqtL~Ls-~NPL~hf-Q-LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----~v-- 237 (1255)
T KOG0444|consen 169 I-RRLSMLQTLKLS-NNPLNHF-Q-LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----IV-- 237 (1255)
T ss_pred H-HHHhhhhhhhcC-CChhhHH-H-Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----cc--
Confidence 0 012346666666 4310000 0 000 112334555666554311 012233445555444332211 00
Q ss_pred hhhhhcccccccEEEEeccceeEee----ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388 299 AIQLLAGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 299 ~~~~l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
-+.+-.+++++.|.|+++.+.-+. ...+|..|+ .-. -...++.-+-..|.|++|.
T Consensus 238 -Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN----QLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 238 -PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN----QLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred -hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc----hhccchHHHhhhHHHHHHH
Confidence 233455667777777777666554 444555444 211 1222333334455566665
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.05 E-value=0.025 Score=60.08 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=36.3
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++... ....+|..++ ++|+.|+|. +..+...| ..-.++|+.|.|. +.+. . +..-+ ...|+.|+
T Consensus 200 ~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls-~N~LtsLP-~~l~~~L~~L~Ls~N~L~-~--LP~~l--~s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNN--ELKSLPENLQ--GNIKTLYAN-SNQLTSIP-ATLPDTIQEMELSINRIT-E--LPERL--PSALQSLD 268 (754)
T ss_pred CCcEEEecCC--CCCcCChhhc--cCCCEEECC-CCccccCC-hhhhccccEEECcCCccC-c--CChhH--hCCCCEEE
Confidence 5666666432 2235665443 467777777 33444333 1223457777776 5544 1 11111 23566666
Q ss_pred Eeee
Q 041388 210 VTCE 213 (440)
Q Consensus 210 L~~c 213 (440)
+.++
T Consensus 269 Ls~N 272 (754)
T PRK15370 269 LFHN 272 (754)
T ss_pred CcCC
Confidence 6554
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.94 E-value=0.0017 Score=54.47 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=46.0
Q ss_pred eeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 144 RVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
....|+.+....+|+.|.++++..-..|+...++|.|+.|++. .++. .+..-+.++|.||.|+|.+.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhhhhcccc
Confidence 4556777777888888888855544555556678888888888 5543 22333557888888888774
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.86 E-value=0.014 Score=53.40 Aligned_cols=232 Identities=15% Similarity=0.140 Sum_probs=118.8
Q ss_pred eecCccccccccccEEEecCCccc---------cCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSI---------QVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l---------~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+.+-..+--|..|+.|..++ ..- ...+ ....|.+|+++.++ +. .+.+..+...=|.|+++++++.
T Consensus 172 ~d~~hildf~~~l~~l~vs~-~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTP-VKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred cchHHHHHhhhheeEEEecC-CCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecc
Confidence 33333333366777777763 110 0011 13357778888777 54 3445566666788888888776
Q ss_pred eCCCC--------------C-----CCcEEec--c-cccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE
Q 041388 214 LHDDT--------------P-----PPNLIIS--S-ATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF 271 (440)
Q Consensus 214 ~~~~~--------------~-----~~~l~i~--~-~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~ 271 (440)
..... . .+.+... . ..|+.|+++ .+ .+.+-++++. -+|+++.|.++-+....+
T Consensus 248 ~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS-~N---~I~~iDESvK-L~Pkir~L~lS~N~i~~v 322 (490)
T KOG1259|consen 248 TIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS-GN---LITQIDESVK-LAPKLRRLILSQNRIRTV 322 (490)
T ss_pred cccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc-cc---chhhhhhhhh-hccceeEEeccccceeee
Confidence 21100 0 0111111 1 245555555 33 1211111211 168888888875433221
Q ss_pred -EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccch-hHHHHH
Q 041388 272 -VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTAN-RAKKLT 345 (440)
Q Consensus 272 -~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~-~~~~l~ 345 (440)
.+..+++|+.++++..... .. .++-..+.|++.|.+..+.++.++ .+-.|..|+ .-. +. ..+.+.
T Consensus 323 ~nLa~L~~L~~LDLS~N~Ls----~~---~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N--~Ie~ldeV~ 393 (490)
T KOG1259|consen 323 QNLAELPQLQLLDLSGNLLA----EC---VGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSN--QIEELDEVN 393 (490)
T ss_pred hhhhhcccceEeecccchhH----hh---hhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccccc--chhhHHHhc
Confidence 2455677777776543321 11 344456778888888888888776 344444444 222 22 222332
Q ss_pred HHhccCCCccccc-cccCCCC-------CccccccceeEEEEEeeecCcchHHHHHHH
Q 041388 346 ELGKSCPAQEQFG-WLESDFD-------VPHCLVHTVKNIEIKGVQGDEDERPLLKYL 395 (440)
Q Consensus 346 ~lL~~~p~L~~L~-~~~~~~~-------~~~c~~~~L~~v~i~~~~~~~~~~~~~~~l 395 (440)
-+-+.|+||+|. ..++-.. +..-+-..-.+|.+.+-.+...|+..+..+
T Consensus 394 -~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 394 -HIGNLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred -ccccccHHHHHhhcCCCccccchHHHHHHHHHhhhhhheecCCCCcchhhhhHHHHH
Confidence 345689999987 3211011 111122334466677777777777766543
No 36
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.75 E-value=0.0022 Score=66.92 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=39.0
Q ss_pred hhhhcccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc
Q 041388 300 IQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 300 ~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
...+.++.+||.|.|+.+.+..++ .+.+|..|+ ..+ +.....+..=...|+.|++|.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS--GNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS--GNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc--cchhhhhhHHHHhhhhhHHHh
Confidence 456778888888888888887766 566777666 334 334445555555677777777
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.43 E-value=0.0034 Score=65.60 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeC
Q 041388 120 FYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENP 190 (440)
Q Consensus 120 ~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~ 190 (440)
+..|+..++ +++.+..... ....+|..++...+|++|... ...+.. ++...++.+|++|.|. ..+.
T Consensus 256 lp~wi~~~~--nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~-~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 256 LPEWIGACA--NLEALNANHN--RLVALPLRISRITSLVSLSAA-YNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred chHHHHhcc--cceEecccch--hHHhhHHHHhhhhhHHHHHhh-hhhhhhCCCcccccceeeeeeehhcccc
Confidence 447777665 6666666432 235677777777777777777 444443 3445568889999998 6665
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.33 E-value=0.013 Score=54.14 Aligned_cols=37 Identities=38% Similarity=0.686 Sum_probs=34.9
Q ss_pred CccCCCCC----hHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388 24 ADRISSLP----DSVLCHILSYIPTKHVVATSVIAKRWKNV 60 (440)
Q Consensus 24 ~D~is~LP----d~lL~~Ils~L~~~d~~rts~lsrrWr~l 60 (440)
.|.|..|| |+|-.+|||+|+..++..+-.+||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 48899999 99999999999999999999999999963
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.95 E-value=0.12 Score=54.84 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=28.0
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEe
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LEN 189 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~ 189 (440)
+++.|.+... ....+|. ..++|++|+|++ ..+...|. ..++|+.|+|. ..+
T Consensus 223 ~L~~L~L~~N--~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 223 HITTLVIPDN--NLTSLPA---LPPELRTLEVSG-NQLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCEEEccCC--cCCCCCC---CCCCCcEEEecC-CccCcccC--cccccceeeccCCch
Confidence 6777766432 2234553 246788888884 34443331 23567777666 543
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.54 E-value=0.01 Score=53.23 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=64.5
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe--ccccc
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII--SSATL 230 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i--~~~~L 230 (440)
...|..|++. ++.+........+|+||.|.++ ..+.....+.-++..||+|++|.+.+.....+ ..+.- .-++|
T Consensus 42 ~~~le~ls~~-n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--stl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVI-NVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--STLRPLKELENL 118 (260)
T ss_pred ccchhhhhhh-ccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc--cccchhhhhcch
Confidence 4566667776 5555554445567899999999 75443567788888899999999988533212 22221 12567
Q ss_pred ceeEEEeecccccccccccEEEEecCCceEEEEec
Q 041388 231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYS 265 (440)
Q Consensus 231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~ 265 (440)
.+|.+. +|..-+...-.+.+-.-.|+|.+|...+
T Consensus 119 ~~Ldl~-n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLF-NCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcc-cCCccccccHHHHHHHHhhhhccccccc
Confidence 888887 7722111000112222357777776654
No 41
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.41 E-value=0.068 Score=51.41 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCCCChHHHHHHhcCCC-chhhhhhhccccchHHHhcc
Q 041388 27 ISSLPDSVLCHILSYIP-TKHVVATSVIAKRWKNVWTA 63 (440)
Q Consensus 27 is~LPd~lL~~Ils~L~-~~d~~rts~lsrrWr~lw~~ 63 (440)
-++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 35799999999999998 78999999999999987554
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.25 E-value=0.19 Score=45.62 Aligned_cols=215 Identities=12% Similarity=-0.006 Sum_probs=106.5
Q ss_pred eeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEcc----C-ceeecCccccccccccEEEecCCccccCCCCccccc
Q 041388 104 IGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQ----Q-SRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFP 178 (440)
Q Consensus 104 v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~----~-~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~ 178 (440)
+..+.++. ..-......|+...++ +++.|.+.+-. + ...++|..+ .+-.+ ....||
T Consensus 32 ~~evdLSG--NtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L---------------~~Ll~-aLlkcp 92 (388)
T COG5238 32 LVEVDLSG--NTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNL---------------VMLLK-ALLKCP 92 (388)
T ss_pred eeEEeccC--CcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHH---------------HHHHH-HHhcCC
Confidence 55555553 4446677899988877 46666554311 1 111222210 00000 123445
Q ss_pred ccceEEEE-EEeC--CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEec
Q 041388 179 CVKILSVR-LENP--NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITA 255 (440)
Q Consensus 179 ~L~~L~L~-~~~~--~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~ 255 (440)
+|++.+|+ ..|. ....+..++++-..|+.|.+.+|..... ..=+| ...|.+|.. ..-.-+.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~--aG~ri-gkal~~la~-------------nKKaa~k 156 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI--AGGRI-GKALFHLAY-------------NKKAADK 156 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc--chhHH-HHHHHHHHH-------------HhhhccC
Confidence 55555555 3332 2456788889999999999999832111 00011 111222211 1223457
Q ss_pred CCceEEEEeccccccE-------EeeCCCCeeEEEEEEeecccccCCchhh--hhhhcccccccEEEEeccceeEee---
Q 041388 256 PKLESLEIYSDLLGSF-------VMHDLHSLKIVKLDIMHAEWAQVDPYRA--IQLLAGINSCKYLYLSAGIMSSVE--- 323 (440)
Q Consensus 256 p~L~~L~~~~~~~~~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~l~~L~l~~~~~~~~~--- 323 (440)
|.|+++.+..+..... .+..--.|..+.+....... .. ..+ ..-++.+.+++.|+|..+++....
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp--eg-v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP--EG-VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc--ch-hHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 7788777744332211 11122356666664433321 10 011 233467889999999888665322
Q ss_pred ------ecccccccc-cccccchhHHHHHHHhcc-----CCCccccc
Q 041388 324 ------LHRNGGRTD-RMASTANRAKKLTELGKS-----CPAQEQFG 358 (440)
Q Consensus 324 ------~f~~L~~L~-~~~~~~~~~~~l~~lL~~-----~p~L~~L~ 358 (440)
.+++|+.|. .-| -....+...+++. .|+|..|.
T Consensus 234 La~al~~W~~lrEL~lnDC--lls~~G~~~v~~~f~e~~~p~l~~L~ 278 (388)
T COG5238 234 LADALCEWNLLRELRLNDC--LLSNEGVKSVLRRFNEKFVPNLMPLP 278 (388)
T ss_pred HHHHhcccchhhhccccch--hhccccHHHHHHHhhhhcCCCccccc
Confidence 677788777 322 1122223333333 58888887
No 43
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.96 E-value=0.072 Score=49.09 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCccCCCCChHHHHHHhc-----CCCchhhhhhhccccchHH
Q 041388 23 NADRISSLPDSVLCHILS-----YIPTKHVVATSVIAKRWKN 59 (440)
Q Consensus 23 ~~D~is~LPd~lL~~Ils-----~L~~~d~~rts~lsrrWr~ 59 (440)
+.+.|+.||||||..||. .++.+++.++|+|||.|+.
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 346688999999999986 4568999999999999985
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.61 E-value=0.051 Score=54.86 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=68.4
Q ss_pred CcEEEEEEEc-c--C-ceeecCccccccccccEEEecCCccccCCC---CcccccccceEEEE-EE-eCCCcchhhhhcc
Q 041388 131 EVGEIQLYLG-Q--Q-SRVELPEAIYSAACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LE-NPNKSVTENLFCS 201 (440)
Q Consensus 131 ~l~~L~l~~~-~--~-~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~ 201 (440)
.++++++..+ . . .....+.....|++|++|++.++..+.+.. .+..+++|++|++. +. ++ +.++..+...
T Consensus 215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt-~~gl~~i~~~ 293 (482)
T KOG1947|consen 215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT-DEGLVSIAER 293 (482)
T ss_pred hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc-hhHHHHHHHh
Confidence 7888887541 1 1 111122233348999999999544455533 12348999999988 76 66 8999999999
Q ss_pred CCCcceEEEeeeeCCCCC-CCcEEecccccceeEEE
Q 041388 202 CPSLEELSVTCELHDDTP-PPNLIISSATLKTCKLI 236 (440)
Q Consensus 202 cp~Le~L~L~~c~~~~~~-~~~l~i~~~~L~~L~i~ 236 (440)
||.|++|+|.+|....-. ...+...++.|+.|.+.
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 999999999999642110 01222345667776665
No 45
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=0.026 Score=51.26 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=52.3
Q ss_pred ccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388 229 TLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN 307 (440)
Q Consensus 229 ~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 307 (440)
+.++|+.+ +| +++ +.++....|.|+.|.++-+...+. .+..|.+|+++++.-.... + ++...++++++
T Consensus 20 ~vkKLNcw-g~---~L~--DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~----s-ldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCW-GC---GLD--DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE----S-LDELEYLKNLP 88 (388)
T ss_pred Hhhhhccc-CC---Ccc--HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc----c-HHHHHHHhcCc
Confidence 46778777 77 442 244555678888888876543321 2344444444444221110 0 00034444555
Q ss_pred cccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388 308 SCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 308 ~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
+|+.|.|..+ -|+.......=..+|+..|||++|.
T Consensus 89 sLr~LWL~EN----------------PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDEN----------------PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccC----------------CcccccchhHHHHHHHHcccchhcc
Confidence 5555544221 1101222334456888999999998
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=90.01 E-value=0.035 Score=52.83 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.3
Q ss_pred hhhhcccccccEEEEeccceeEee--ecccccccc-------cccccchhHHHHHHHhcc
Q 041388 300 IQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-------RMASTANRAKKLTELGKS 350 (440)
Q Consensus 300 ~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-------~~~~~~~~~~~l~~lL~~ 350 (440)
...++++++++.|.|.++-+..+. .|..+..|. -|+ ......|+..-++.
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~-CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN-CNCRLAWLGEWLRK 373 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-CccchHHHHHHHhh
Confidence 567789999999999999888776 566555544 233 34556677776665
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.37 E-value=0.33 Score=51.22 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc--cccccchhHHHHHHHhcc
Q 041388 276 LHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD--RMASTANRAKKLTELGKS 350 (440)
Q Consensus 276 ~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~--~~~~~~~~~~~l~~lL~~ 350 (440)
+|+|+.+.+....-. ..++ .++.+++++|..|+|++..+..+. .+.||+.|. .+. -.+...+..++.
T Consensus 147 LPsL~sL~i~~~~~~--~~dF---~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe--~e~~~~l~~LF~- 218 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFD--NDDF---SQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLE--FESYQDLIDLFN- 218 (699)
T ss_pred CcccceEEecCceec--chhH---HHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCC--CCchhhHHHHhc-
Confidence 455555555443321 1122 566778888888888887777666 455555444 111 112223333332
Q ss_pred CCCccccc-cccCC-------CCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388 351 CPAQEQFG-WLESD-------FDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW 408 (440)
Q Consensus 351 ~p~L~~L~-~~~~~-------~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~ 408 (440)
..+|+.|. ..... ...-+|... |-++++-++.|+.-.-++++-+++.=++|+++...
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 45555555 21111 112255422 55666666777777778888888888888888754
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.43 E-value=0.54 Score=46.02 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=34.5
Q ss_pred hccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEecc
Q 041388 199 FCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSD 266 (440)
Q Consensus 199 ls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~ 266 (440)
+..|+.++.|.+.+|.. ..+..-.++|++|.+. +|.. ...+. .-.++|++|.++++
T Consensus 48 ~~~~~~l~~L~Is~c~L-----~sLP~LP~sLtsL~Ls-nc~n------LtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDI-----ESLPVLPNELTEITIE-NCNN------LTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCC-----cccCCCCCCCcEEEcc-CCCC------cccCCchhhhhhhheEccCc
Confidence 34578899999998843 3333223478889888 7721 11111 11358888888765
No 49
>PLN03150 hypothetical protein; Provisional
Probab=88.33 E-value=0.48 Score=49.74 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=51.8
Q ss_pred cccEEEecCCcccc-C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388 156 CLKVLTLDSDFSIQ-V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT 232 (440)
Q Consensus 156 ~L~~L~L~~~~~l~-~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~ 232 (440)
.++.|+|.+ ..+. . ++....+++|+.|+|. ..+. ..+...+..++.|+.|+|.++...+..+..+ -..++|+.
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRI 494 (623)
T ss_pred EEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCE
Confidence 377788883 3332 2 3345578899999999 8776 3455567889999999999875422100111 13478999
Q ss_pred eEEEeec
Q 041388 233 CKLIVRS 239 (440)
Q Consensus 233 L~i~~~~ 239 (440)
|.+. ++
T Consensus 495 L~Ls-~N 500 (623)
T PLN03150 495 LNLN-GN 500 (623)
T ss_pred EECc-CC
Confidence 9998 65
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.94 E-value=0.7 Score=40.26 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=35.6
Q ss_pred cccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.+.|..|.|++ -++.. .+ ....+|+|++|.|. ..+..-++++. +.+||.|++|++.+-
T Consensus 63 l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 56777788873 33333 23 23356778888888 66652333333 457888888887764
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=87.52 E-value=1.3 Score=30.49 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=37.2
Q ss_pred CcEEEEEEEccCceeecCccccc-cccccEEEecCCccccC-CC-CcccccccceEEEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYS-AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR 186 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~ 186 (440)
+++.|++..+ ....+|...|. +++|++|+++ +..+.. ++ .+.++++|+.|++.
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETSS--TESEECTTTTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEET
T ss_pred cCcEEECCCC--CCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCc
Confidence 4566666432 35677876665 9999999999 444433 32 46789999999986
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=87.43 E-value=0.3 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=19.1
Q ss_pred ccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388 179 CVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 179 ~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
+|++|+|. ..+. .+...++.||.|+.|++.++.
T Consensus 2 ~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCc---ccCchHhCCCCCCEEEecCCC
Confidence 45666666 5544 244446677777777777753
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=86.39 E-value=0.067 Score=45.11 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=43.7
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeC
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENP 190 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~ 190 (440)
+++.|.+.+ ....++|..+.+.++|+.|.++ --++.. |..+++||.|+.|+|. ..+.
T Consensus 57 nlevln~~n--nqie~lp~~issl~klr~lnvg-mnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 57 NLEVLNLSN--NQIEELPTSISSLPKLRILNVG-MNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhhhhhccc--chhhhcChhhhhchhhhheecc-hhhhhcCccccCCCchhhhhhccccccc
Confidence 455555543 2357899999999999999999 555544 4468899999999999 7776
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=85.62 E-value=0.16 Score=55.15 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=36.9
Q ss_pred cccccEEEecCCcc-ccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388 154 AACLKVLTLDSDFS-IQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 154 ~~~L~~L~L~~~~~-l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
|+.|++|-+.++.. +...+ .+.++|.|+.|+|+ +.-- ..+..-++..-+|+.|++.++.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCC
Confidence 66777777764321 33322 25567788888887 4422 3455667777788888887753
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.88 E-value=0.67 Score=40.36 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred cccceeEEEEEeee-cCcchHHHHHHHHhhccccceEEEEeecCCCh-hhHHHHHHHHhcccCcCCcceEEe
Q 041388 370 LVHTVKNIEIKGVQ-GDEDERPLLKYLLQFAAAMEKMLMWAKASVPK-ENRANLRESILQLPRASMKTTIEI 439 (440)
Q Consensus 370 ~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~a~~L~~m~i~~~~~~~~-~~~~~~~~~l~~~~r~s~~~~i~~ 439 (440)
+..||+.+++.|+. -++..++.+.. .++|+++.|+..+.... +..+.++++. =++|+|++
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~----lknLr~L~l~~l~~v~~~e~~~~~Le~a------LP~c~I~~ 210 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLK----LKNLRRLHLYDLPYVANLELVQRQLEEA------LPKCDIVG 210 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHH----hhhhHHHHhcCchhhhchHHHHHHHHHh------Ccccceec
Confidence 56778888887665 55666655543 47888888888776543 4433244443 36777765
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=84.56 E-value=0.42 Score=30.61 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=16.0
Q ss_pred cccEEEecCCccccCCCC-cccccccceEEEE-EEeC
Q 041388 156 CLKVLTLDSDFSIQVPSS-GTCFPCVKILSVR-LENP 190 (440)
Q Consensus 156 ~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~L~-~~~~ 190 (440)
+|++|+|. ...+...+. ...+++|+.|+++ ..+.
T Consensus 2 ~L~~L~l~-~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLS-NNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEET-SSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEcc-CCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 45555555 333333332 4455666666665 4443
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=83.98 E-value=0.37 Score=47.48 Aligned_cols=159 Identities=19% Similarity=0.165 Sum_probs=90.0
Q ss_pred ccccccEEEecCCccccCCCCccccc--ccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388 153 SAACLKVLTLDSDFSIQVPSSGTCFP--CVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT 229 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~ 229 (440)
..+.++.|.+. ...+...+....+. +|+.|++. ..+. + +..-+..+|.|+.|.+.++....+ .......+.
T Consensus 114 ~~~~l~~L~l~-~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~--l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLD-NNNITDIPPLIGLLKSNLKELDLSDNKIE-S--LPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSN 187 (394)
T ss_pred cccceeEEecC-CcccccCccccccchhhcccccccccchh-h--hhhhhhccccccccccCCchhhhh--hhhhhhhhh
Confidence 34678888888 44444433244443 89999999 6655 2 113467899999999999754333 222226688
Q ss_pred cceeEEEeecccccccccccEEEE--ecCC-ceEEEEeccc-ccc-EEeeCCCCeeEEEEEEeecccccCCchhhhhhhc
Q 041388 230 LKTCKLIVRSEDMLFREVDYMLTI--TAPK-LESLEIYSDL-LGS-FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLA 304 (440)
Q Consensus 230 L~~L~i~~~~~~~~~~~~~~~l~~--~~p~-L~~L~~~~~~-~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~ 304 (440)
|+.|.++ ++ .+ ..+.. ..++ |++|.+.+.. ... ..+.+...+..+.+..... ... ...+.
T Consensus 188 L~~L~ls-~N---~i----~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~---~~~~~ 252 (394)
T COG4886 188 LNNLDLS-GN---KI----SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL----EDL---PESIG 252 (394)
T ss_pred hhheecc-CC---cc----ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee----eec---cchhc
Confidence 8999888 65 23 22222 2444 8888887662 111 1233333333333111110 000 24556
Q ss_pred ccccccEEEEeccceeEee---ecccccccc
Q 041388 305 GINSCKYLYLSAGIMSSVE---LHRNGGRTD 332 (440)
Q Consensus 305 ~~~~l~~L~l~~~~~~~~~---~f~~L~~L~ 332 (440)
.+++++.|.++.+.+..+. ...+|+.|.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~ 283 (394)
T COG4886 253 NLSNLETLDLSNNQISSISSLGSLTNLRELD 283 (394)
T ss_pred cccccceeccccccccccccccccCccCEEe
Confidence 7777888888877776655 344444444
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=0.29 Score=45.12 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=93.9
Q ss_pred ccccccEEEecCCccccCCC-Cc-ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee--CCCCCCCcEEecc
Q 041388 153 SAACLKVLTLDSDFSIQVPS-SG-TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL--HDDTPPPNLIISS 227 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~-~~-~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~--~~~~~~~~l~i~~ 227 (440)
..+.|+.|+|+ +-.+..+- .. ....+|++|.|. ..++ -......++.-|.+++|.+.... .-...+.+..--+
T Consensus 95 ~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 95 QLPALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred cCccceEeecc-CCcCCCccccCcccccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 46789999999 55554331 11 245588888888 7776 56678888899999999887641 1011112333345
Q ss_pred cccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---------EEeeCCCCeeEEEEEEeecccccCCchh
Q 041388 228 ATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---------FVMHDLHSLKIVKLDIMHAEWAQVDPYR 298 (440)
Q Consensus 228 ~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---------~~~~~~~~L~~~~i~~~~~~~~~~~~~~ 298 (440)
+.+++|... .|....+. +...+.--.||+..+.+-.+.... +..-++-.|....|+-+..
T Consensus 173 ~~v~tlh~~-~c~~~~w~-~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas--------- 241 (418)
T KOG2982|consen 173 TEVLTLHQL-PCLEQLWL-NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS--------- 241 (418)
T ss_pred hhhhhhhcC-CcHHHHHH-HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH---------
Confidence 678888877 77322221 122334446777777765442211 1111122233333322222
Q ss_pred hhhhhcccccccEEEEeccceeE----------e-eecccccccc
Q 041388 299 AIQLLAGINSCKYLYLSAGIMSS----------V-ELHRNGGRTD 332 (440)
Q Consensus 299 ~~~~l~~~~~l~~L~l~~~~~~~----------~-~~f~~L~~L~ 332 (440)
..-+.+++.+..|.+..+.+-. + ..+.+++.|+
T Consensus 242 -vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 242 -VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred -HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 4557788888888887664421 1 1566777676
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=82.31 E-value=2.3 Score=41.75 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
++++.|++..+ ....+|. --.+|++|.+++|..+...|... .++|+.|.+. +... .. --+.|+.|
T Consensus 52 ~~l~~L~Is~c--~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L-----~s---LP~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDC--DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEI-----SG---LPESVRSL 117 (426)
T ss_pred cCCCEEEeCCC--CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccc-----cc---cccccceE
Confidence 47788887654 2233441 12358888888666665544212 3578888888 6321 11 12467888
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEE
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI 286 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~ 286 (440)
.+.... . ..+..-.++|+.|.+. .. .... ...+. .--++|++|.+.++.....+-.-..+|+.+.++.
T Consensus 118 ~L~~n~---~--~~L~~LPssLk~L~I~-~~---n~~~-~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKGSA---T--DSIKNVPNGLTSLSIN-SY---NPEN-QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred EeCCCC---C--cccccCcchHhheecc-cc---cccc-ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 875421 1 2223233578888775 32 0100 00111 1125788888877543221111124677777644
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.17 E-value=0.62 Score=47.66 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=35.7
Q ss_pred CCccCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388 23 NADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV 60 (440)
Q Consensus 23 ~~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l 60 (440)
..|.++.||-++..+|+++|+.++++..+.+|+.|+.+
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 46899999999999999999999999999999999864
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=81.06 E-value=2.1 Score=44.63 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=33.0
Q ss_pred ccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEE
Q 041388 177 FPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLI 236 (440)
Q Consensus 177 ~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~ 236 (440)
+|.|+.|+|+ ..+. +.+ .+..||.|+.|+|.+.....+ ..+...+-.|..|.+.
T Consensus 186 l~ale~LnLshNk~~-~v~---~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD---NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HHHhhhhccchhhhh-hhH---HHHhcccccccccccchhccc--cccchhhhhheeeeec
Confidence 4678888888 7776 332 456788888888877533233 3333333345555555
No 62
>PF13013 F-box-like_2: F-box-like domain
Probab=78.92 E-value=0.94 Score=35.42 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=26.5
Q ss_pred cCCCCChHHHHHHhcCCCchhhhhhhcccc
Q 041388 26 RISSLPDSVLCHILSYIPTKHVVATSVIAK 55 (440)
Q Consensus 26 ~is~LPd~lL~~Ils~L~~~d~~rts~lsr 55 (440)
.+.+||+||+..|+.+-...+....+..++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988877776
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.40 E-value=1.3 Score=40.04 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=8.1
Q ss_pred HHHhccCCCccccc
Q 041388 345 TELGKSCPAQEQFG 358 (440)
Q Consensus 345 ~~lL~~~p~L~~L~ 358 (440)
..+++-.|.|+.|.
T Consensus 136 e~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLD 149 (260)
T ss_pred HHHHHHhhhhcccc
Confidence 34555566666666
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=77.22 E-value=5.8 Score=34.78 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=54.2
Q ss_pred cEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE--EecccccceeE
Q 041388 158 KVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL--IISSATLKTCK 234 (440)
Q Consensus 158 ~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l--~i~~~~L~~L~ 234 (440)
..++|+ ...+...+.+.++++|.+|.|. ..++ + .-..+....|+|..|.|.+.....+ +.+ -..+|+|+.|+
T Consensus 45 d~iDLt-dNdl~~l~~lp~l~rL~tLll~nNrIt-~-I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 45 DAIDLT-DNDLRKLDNLPHLPRLHTLLLNNNRIT-R-IDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKLEYLT 119 (233)
T ss_pred ceeccc-ccchhhcccCCCccccceEEecCCcce-e-eccchhhhccccceEEecCcchhhh--hhcchhccCCccceee
Confidence 345555 3333333335578889999998 7665 1 1123334568889999888532222 222 23567888887
Q ss_pred EEeecccccccccc-cEEEEecCCceEEEEec
Q 041388 235 LIVRSEDMLFREVD-YMLTITAPKLESLEIYS 265 (440)
Q Consensus 235 i~~~~~~~~~~~~~-~~l~~~~p~L~~L~~~~ 265 (440)
+- +...... .+- .-+.-..|+|+.|++.+
T Consensus 120 ll-~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LL-GNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ec-CCchhcc-cCceeEEEEecCcceEeehhh
Confidence 76 5410000 001 12233467777777754
No 65
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=76.12 E-value=1.5 Score=40.67 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=23.3
Q ss_pred hccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEE
Q 041388 199 FCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLI 236 (440)
Q Consensus 199 ls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~ 236 (440)
++.+.+|..+.+..|...++ ..+...-|+|.++.+.
T Consensus 210 l~~f~~l~~~~~s~~~~~~i--~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENI--VDIELLKPTLQTICVH 245 (490)
T ss_pred hHHhhhhheeeeeccchhhe--eceeecCchhheeeee
Confidence 34567777777777765555 5555566777777665
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.28 E-value=0.46 Score=41.35 Aligned_cols=41 Identities=22% Similarity=0.130 Sum_probs=28.9
Q ss_pred cccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388 174 GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 174 ~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
...++.++.|.+. |..-+|..+..+-...|+||+|.|.+|.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 3456667777777 6655466777777777888888888774
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.21 E-value=2.8 Score=38.57 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=38.2
Q ss_pred hhhhcccccccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388 300 IQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 300 ~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..+...++.++.|+|+.+.+..+. .|.+|+.|. .-. ....-.-...|++.|+|+.|.
T Consensus 34 Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN--~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 34 ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN--CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc--ccccHHHHHHHhcCchhhhHh
Confidence 345577788888888888777776 566666665 222 222222335788999999997
No 68
>PLN03150 hypothetical protein; Provisional
Probab=70.54 E-value=4.1 Score=42.82 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=49.5
Q ss_pred ccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCC
Q 041388 179 CVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPK 257 (440)
Q Consensus 179 ~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~ 257 (440)
.++.|+|. ..+. ..+..-+..++.|+.|.|.++...+.. ....-..++|+.|++. ++ .+........-..++
T Consensus 419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs-~N---~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLS-YN---SFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECC-CC---CCCCCCchHHhcCCC
Confidence 36777777 6654 344555778899999999887432110 1111234789999988 66 332111111225688
Q ss_pred ceEEEEeccc
Q 041388 258 LESLEIYSDL 267 (440)
Q Consensus 258 L~~L~~~~~~ 267 (440)
|+.|.++++.
T Consensus 492 L~~L~Ls~N~ 501 (623)
T PLN03150 492 LRILNLNGNS 501 (623)
T ss_pred CCEEECcCCc
Confidence 9999988764
No 69
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.05 E-value=0.13 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.063 Sum_probs=18.4
Q ss_pred ccccccEEEEeccceeEee-ecccccccc
Q 041388 305 GINSCKYLYLSAGIMSSVE-LHRNGGRTD 332 (440)
Q Consensus 305 ~~~~l~~L~l~~~~~~~~~-~f~~L~~L~ 332 (440)
-+++++.|+++.+.+..++ .+.|| ||+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLK 300 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eee
Confidence 3456777888877777766 56666 555
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.00 E-value=2 Score=23.81 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=10.9
Q ss_pred CCCcceEEEeeee
Q 041388 202 CPSLEELSVTCEL 214 (440)
Q Consensus 202 cp~Le~L~L~~c~ 214 (440)
||.|+.|.|.+|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 7888888888884
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=61.18 E-value=14 Score=33.97 Aligned_cols=147 Identities=15% Similarity=0.082 Sum_probs=77.4
Q ss_pred hhhhhccCCCcceEEEeeeeCCC-CCC--CcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE
Q 041388 195 TENLFCSCPSLEELSVTCELHDD-TPP--PNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF 271 (440)
Q Consensus 195 l~~lls~cp~Le~L~L~~c~~~~-~~~--~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~ 271 (440)
+-..+..||+|+..+|++..... .++ ..+.-++..|++|.+. +|.-+.+ . ...+ +..|..|-+. -
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~-NnGlGp~-a-G~ri---gkal~~la~n------K 151 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN-NNGLGPI-A-GGRI---GKALFHLAYN------K 151 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee-cCCCCcc-c-hhHH---HHHHHHHHHH------h
Confidence 34556689999999998853210 000 1222345678888887 7721111 0 0000 1112222221 1
Q ss_pred EeeCCCCeeEEEEEEeecccccCCchhh-hhhhcccccccEEEEeccceeEee----------ecccccccc----cccc
Q 041388 272 VMHDLHSLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE----------LHRNGGRTD----RMAS 336 (440)
Q Consensus 272 ~~~~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~----------~f~~L~~L~----~~~~ 336 (440)
...+.|.|+.+...-.... ..+... ...+++=.+++.+.|..+++..-. .+++|+-|+ .|.
T Consensus 152 Kaa~kp~Le~vicgrNRle---ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft- 227 (388)
T COG5238 152 KAADKPKLEVVICGRNRLE---NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT- 227 (388)
T ss_pred hhccCCCceEEEeccchhc---cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh-
Confidence 2345677765544322211 111111 344555568999999877765321 566777766 232
Q ss_pred cchhHHHHHHHhccCCCccccc
Q 041388 337 TANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 337 ~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
......+...+..-|.|+.|.
T Consensus 228 -~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 228 -LEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred -hhhHHHHHHHhcccchhhhcc
Confidence 334455677777788888887
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=49.06 E-value=1.6 Score=42.12 Aligned_cols=27 Identities=4% Similarity=0.044 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhhccccceEEEEeecC
Q 041388 386 EDERPLLKYLLQFAAAMEKMLMWAKAS 412 (440)
Q Consensus 386 ~~~~~~~~~ll~~a~~L~~m~i~~~~~ 412 (440)
.+.++.+-=.+.|+++|+.+.++..+-
T Consensus 514 nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 514 NNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCchhhCChhhccccceeEEEecCCcc
Confidence 466777777888999999999987663
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=48.48 E-value=7.9 Score=37.98 Aligned_cols=165 Identities=19% Similarity=0.183 Sum_probs=86.3
Q ss_pred CcEEEEEEEccCceeecCccccccc-cccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAA-CLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
.+..+.+.. .....+|......+ +|+.|++. .-.+... .....+++|+.|.+. ..+. + +.......+.|+.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~--l~~~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFNDLS-D--LPKLLSNLSNLNN 190 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhccccccc-ccchhhhhhhhhccccccccccCCchhh-h--hhhhhhhhhhhhh
Confidence 455555532 23456776666664 88999988 4444443 236678899999998 7665 2 3333337788888
Q ss_pred EEEeeeeCCCCCCCcEEec--cc-ccceeEEEeecccccccccccEEEEecCCceEEEEecccccc--EEeeCCCCeeEE
Q 041388 208 LSVTCELHDDTPPPNLIIS--SA-TLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS--FVMHDLHSLKIV 282 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i~--~~-~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~--~~~~~~~~L~~~ 282 (440)
|.+.+... ..+... .+ .|+.|.+. .. .... .....-...++..+.+.+..... -.+.+.++++.+
T Consensus 191 L~ls~N~i-----~~l~~~~~~~~~L~~l~~~-~N---~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 191 LDLSGNKI-----SDLPPEIELLSALEELDLS-NN---SIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred eeccCCcc-----ccCchhhhhhhhhhhhhhc-CC---ccee-cchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 98888532 333221 23 37777766 32 0100 00111123344444433332221 223445555555
Q ss_pred EEEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388 283 KLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM 319 (440)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 319 (440)
.+....... ...+..+.+++.|+++...+
T Consensus 261 ~~s~n~i~~--------i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 261 DLSNNQISS--------ISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccccc--------cccccccCccCEEeccCccc
Confidence 544333211 11255667778888776533
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.42 E-value=8.5 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=5.9
Q ss_pred CCCcceEEEeee
Q 041388 202 CPSLEELSVTCE 213 (440)
Q Consensus 202 cp~Le~L~L~~c 213 (440)
||.|++|+|.+|
T Consensus 1 ~~~L~~L~l~~n 12 (24)
T PF13516_consen 1 NPNLETLDLSNN 12 (24)
T ss_dssp -TT-SEEE-TSS
T ss_pred CCCCCEEEccCC
Confidence 566677766665
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=42.72 E-value=17 Score=17.77 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=4.8
Q ss_pred cccEEEec
Q 041388 156 CLKVLTLD 163 (440)
Q Consensus 156 ~L~~L~L~ 163 (440)
+|+.|+|+
T Consensus 2 ~L~~L~l~ 9 (17)
T PF13504_consen 2 NLRTLDLS 9 (17)
T ss_dssp T-SEEEET
T ss_pred ccCEEECC
Confidence 56677777
No 76
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=41.81 E-value=13 Score=40.62 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=33.8
Q ss_pred ecCccccc-cccccEEEecCCccccCCCCc-ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 146 ELPEAIYS-AACLKVLTLDSDFSIQVPSSG-TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 146 ~lp~~l~~-~~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.++...|. .+.|+.|+|+++..+...|.. ..+-+|+.|+|+ ..+. .+..-+.....|.+|++...
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~---~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS---HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc---ccchHHHHHHhhheeccccc
Confidence 34444344 566677777655554444422 336666666666 4443 23333444455666666553
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=39.50 E-value=23 Score=18.49 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=9.5
Q ss_pred cccEEEEeccceeEe
Q 041388 308 SCKYLYLSAGIMSSV 322 (440)
Q Consensus 308 ~l~~L~l~~~~~~~~ 322 (440)
+|+.|+|+.+.++.+
T Consensus 1 ~L~~Ldls~n~l~~i 15 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI 15 (22)
T ss_dssp TESEEEETSSEESEE
T ss_pred CccEEECCCCcCEeC
Confidence 467777777655543
No 78
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=38.34 E-value=1.5e+02 Score=23.85 Aligned_cols=116 Identities=11% Similarity=0.147 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCCceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCcc--ccccccccEEEecCC
Q 041388 88 FADFVHTVLLRTNPAKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEA--IYSAACLKVLTLDSD 165 (440)
Q Consensus 88 ~~~~v~~~L~~~~~~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~ 165 (440)
|.+.+...|.+.....++++.+.. .....+...+.+.-...+++|++. .......+... +-..++++.+.++ +
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~---~~~~~~~~iL~~l~p~~L~~i~i~-~~~~~~~~~~i~~~eqWk~~k~~~i~-~ 77 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINS---LNQSEVLSILPFLDPGVLEEIRIN-DEEEEEDFDEIVELEQWKNAKEFKIG-G 77 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEc---CCHHHHHHHHhcCCCCcCEEEECc-CcccccchhheeehHHhceeheeEec-c
Confidence 455667777773335677777764 345678888888888889999992 11111222221 1236788888888 4
Q ss_pred ccccCCCCcccccccceEEEE-EEeCCCcch---hhhhccCCCcceEEE
Q 041388 166 FSIQVPSSGTCFPCVKILSVR-LENPNKSVT---ENLFCSCPSLEELSV 210 (440)
Q Consensus 166 ~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l---~~lls~cp~Le~L~L 210 (440)
......+ ...|.++....+. -.++ .+++ ...+..-|..+.-.+
T Consensus 78 ~~~~~~~-l~~f~h~~~~~i~~~~~t-~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 78 FVIDSFP-LENFSHFEKFNIHFESIT-VEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred cccccHH-HHhCCCccEEEEEEEeCC-HHHHHHHHHHHcCCCCceEEEE
Confidence 3333223 5677788888887 6666 3343 333344555555555
No 79
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=33.50 E-value=26 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred ccCCCCChHHHHHHhcCCCchhhhh
Q 041388 25 DRISSLPDSVLCHILSYIPTKHVVA 49 (440)
Q Consensus 25 D~is~LPd~lL~~Ils~L~~~d~~r 49 (440)
...+.||-|+-..|+++|+-+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999888754
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=33.47 E-value=54 Score=25.80 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=22.7
Q ss_pred Cccccc-cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEe
Q 041388 148 PEAIYS-AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVT 211 (440)
Q Consensus 148 p~~l~~-~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~ 211 (440)
+...|. |.+|+.+.+.....--....+.+++.|+.+.+. . +. ..-...+.+|+.|+.+.+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEET
T ss_pred CHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-cc--ccceeeeeccccccccccc
Confidence 334443 667777776632211111124445556666655 2 11 1112334566666666664
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=31.28 E-value=25 Score=34.87 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=13.6
Q ss_pred ccccccEEEEeccceeEeeeccccccc
Q 041388 305 GINSCKYLYLSAGIMSSVELHRNGGRT 331 (440)
Q Consensus 305 ~~~~l~~L~l~~~~~~~~~~f~~L~~L 331 (440)
.++.|+.|.+..+.+..+..|..|+.|
T Consensus 138 ~l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred hccchhhheeccCcchhccCCccchhh
Confidence 344466666666655555533333333
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=29.30 E-value=23 Score=35.10 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=26.2
Q ss_pred cccccEEEecCCccccCCCC-cccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPSS-GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
..+|..|.+. .-.+..... ..++++|++|+|+ ..+.+-..+. .++.|+.|++.+.
T Consensus 94 ~~~l~~l~l~-~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 94 LKSLEALDLY-DNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGN 150 (414)
T ss_pred ccceeeeecc-ccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccC
Confidence 4555555555 333333332 3445666666666 5554222222 2333666666554
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=26.01 E-value=6.5 Score=39.92 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=65.1
Q ss_pred eecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL 223 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l 223 (440)
-.+|..+.+...|+.|+|+ .-.+...|...++--|+.|-+. .+++ ... .=+..-+.|..|+...|....+ ..=
T Consensus 111 r~ip~~i~~L~~lt~l~ls-~NqlS~lp~~lC~lpLkvli~sNNkl~-~lp--~~ig~~~tl~~ld~s~nei~sl--psq 184 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLS-SNQLSHLPDGLCDLPLKVLIVSNNKLT-SLP--EEIGLLPTLAHLDVSKNEIQSL--PSQ 184 (722)
T ss_pred eecchhhhhhhHHHHhhhc-cchhhcCChhhhcCcceeEEEecCccc-cCC--cccccchhHHHhhhhhhhhhhc--hHH
Confidence 3455666666667777776 3333333334555567777777 5554 111 1112456666666666532111 000
Q ss_pred EecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc--EEeeCCCCeeEEEEEEeec
Q 041388 224 IISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS--FVMHDLHSLKIVKLDIMHA 289 (440)
Q Consensus 224 ~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~--~~~~~~~~L~~~~i~~~~~ 289 (440)
-..-.+|+.|.+. .. .+..-...+. .-.|.+|+++.+.... +.+.++..|+.+-++..+.
T Consensus 185 l~~l~slr~l~vr-Rn---~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 185 LGYLTSLRDLNVR-RN---HLEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhHHHHHHHHHh-hh---hhhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 1122455666555 33 1110011112 4457777777665433 2345566666666655443
No 84
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.08 E-value=21 Score=33.65 Aligned_cols=39 Identities=21% Similarity=0.459 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHhcCCCchhhhhhhccccchHHHhccCC
Q 041388 27 ISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTAVP 65 (440)
Q Consensus 27 is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~~~ 65 (440)
+..+|++++..|++|+.-+++++.+.+|+|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 446899999999999999999999999999987655444
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=23.29 E-value=13 Score=30.66 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=31.2
Q ss_pred cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
...|+..+|. .-.+..+| ....||.+++|+|. ..+. +-.-+ +..-|.|+.|++++.
T Consensus 52 ~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE--~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 52 GYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE--LAAMPALRSLNLRFN 110 (177)
T ss_pred CceEEEEecc-cchhhhCCHHHhhccchhhhhhcchhhhh-hchHH--HhhhHHhhhcccccC
Confidence 3344445555 22333322 23456677777777 6665 43333 566777777777774
No 86
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.65 E-value=1e+02 Score=24.71 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=23.3
Q ss_pred ccceEEEEEEeCCCcchhhhhccCCCcceEEEeee
Q 041388 179 CVKILSVRLENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 179 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+=+..+|..+-+ ..++-.++..||.|+.+.+-..
T Consensus 18 nE~~VHlAFRPS-N~Dif~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 18 NEEIVHLAFRPS-NKDIFSLVERCPNLKAIQIPPS 51 (131)
T ss_pred CceEEEEEecCc-chHHHHHHHhCCCCeEEeCChH
Confidence 334444443333 6788999999999999887443
Done!