Query 041388
Match_columns 440
No_of_seqs 167 out of 1721
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 7.1E-20 2.4E-24 188.8 6.8 36 28-63 14-50 (592)
2 2p1m_B Transport inhibitor res 99.8 3.1E-19 1E-23 184.1 7.5 350 24-408 3-405 (594)
3 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.3E-21 152.5 -0.7 164 25-213 7-178 (336)
4 4fcg_A Uncharacterized protein 98.9 4.9E-09 1.7E-13 99.5 9.3 83 126-214 77-161 (328)
5 4fmz_A Internalin; leucine ric 98.8 3E-09 1E-13 101.6 5.3 58 151-213 84-142 (347)
6 2p1m_B Transport inhibitor res 98.7 3.4E-09 1.2E-13 108.8 3.8 107 102-213 105-221 (594)
7 3ogk_B Coronatine-insensitive 98.7 1.3E-09 4.5E-14 111.9 0.2 295 93-409 66-412 (592)
8 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 5.5E-09 1.9E-13 70.2 3.1 39 24-62 6-44 (53)
9 4fmz_A Internalin; leucine ric 98.7 1.2E-08 4.2E-13 97.3 6.0 267 102-409 66-342 (347)
10 1o6v_A Internalin A; bacterial 98.6 4.5E-08 1.5E-12 97.5 8.0 97 102-212 68-165 (466)
11 3o6n_A APL1; leucine-rich repe 98.6 4.2E-08 1.4E-12 95.3 7.1 135 256-409 205-348 (390)
12 1o6v_A Internalin A; bacterial 98.6 5.2E-08 1.8E-12 97.0 7.6 245 130-411 68-320 (466)
13 3oja_B Anopheles plasmodium-re 98.6 5.8E-08 2E-12 99.8 6.7 75 303-381 274-354 (597)
14 2z80_A TOLL-like receptor 2, v 98.5 4.3E-07 1.5E-11 86.8 10.3 248 130-397 52-328 (353)
15 4fcg_A Uncharacterized protein 98.5 2.3E-07 7.9E-12 87.8 7.9 194 102-317 81-287 (328)
16 3o6n_A APL1; leucine-rich repe 98.4 8.3E-08 2.8E-12 93.1 4.0 229 152-411 90-329 (390)
17 2z63_A TOLL-like receptor 4, v 98.4 5.4E-07 1.8E-11 91.8 9.1 121 147-285 274-404 (570)
18 2id5_A Lingo-1, leucine rich r 98.4 1.3E-07 4.6E-12 94.2 4.3 80 131-213 105-186 (477)
19 1h6u_A Internalin H; cell adhe 98.4 7.2E-08 2.5E-12 90.5 2.0 139 131-286 42-182 (308)
20 2z66_A Variable lymphocyte rec 98.4 8.1E-08 2.8E-12 89.9 2.3 234 145-395 20-273 (306)
21 3v47_A TOLL-like receptor 5B a 98.4 3E-07 1E-11 91.0 5.7 81 131-214 80-165 (455)
22 2ast_B S-phase kinase-associat 98.3 1.2E-08 4E-13 96.9 -4.6 58 155-213 70-128 (336)
23 1z7x_W Ribonuclease inhibitor; 98.3 5.3E-09 1.8E-13 103.8 -7.5 34 179-213 86-123 (461)
24 2z63_A TOLL-like receptor 4, v 98.3 5.2E-07 1.8E-11 91.9 7.1 239 131-397 283-546 (570)
25 1ogq_A PGIP-2, polygalacturona 98.3 3.5E-07 1.2E-11 86.0 5.1 66 146-213 67-135 (313)
26 3oja_A Leucine-rich immune mol 98.3 1.4E-07 4.9E-12 94.3 2.4 201 154-381 33-246 (487)
27 3rgz_A Protein brassinosteroid 98.3 7.6E-08 2.6E-12 102.0 -0.2 230 131-381 101-352 (768)
28 2id5_A Lingo-1, leucine rich r 98.3 9E-07 3.1E-11 88.2 7.6 234 131-381 81-329 (477)
29 3zyj_A Leucine-rich repeat-con 98.3 3.4E-07 1.2E-11 90.4 4.3 92 304-396 204-305 (440)
30 3v47_A TOLL-like receptor 5B a 98.3 7.6E-08 2.6E-12 95.3 -0.4 107 130-239 54-164 (455)
31 1ozn_A Reticulon 4 receptor; N 98.3 2.4E-07 8.2E-12 85.7 2.9 56 155-213 32-90 (285)
32 3oja_B Anopheles plasmodium-re 98.3 3E-07 1E-11 94.5 3.7 201 131-358 76-284 (597)
33 3o53_A Protein LRIM1, AGAP0063 98.3 1.8E-07 6.1E-12 88.1 1.7 225 154-408 33-270 (317)
34 3vq2_A TLR4, TOLL-like recepto 98.3 1.1E-07 3.6E-12 97.9 -0.1 138 130-286 285-433 (606)
35 3vq2_A TLR4, TOLL-like recepto 98.3 1.5E-06 5E-11 89.4 8.2 148 151-321 281-438 (606)
36 3t6q_A CD180 antigen; protein- 98.2 4.9E-08 1.7E-12 100.5 -3.2 58 153-213 276-335 (606)
37 2ca6_A RAN GTPase-activating p 98.2 5E-08 1.7E-12 94.6 -3.0 37 176-213 92-132 (386)
38 1h6u_A Internalin H; cell adhe 98.2 8.7E-07 3E-11 83.0 5.6 166 130-320 63-230 (308)
39 3bz5_A Internalin-J, INLJ; leu 98.2 4.6E-07 1.6E-11 89.8 3.8 191 130-358 42-239 (457)
40 3bz5_A Internalin-J, INLJ; leu 98.2 6.9E-07 2.3E-11 88.6 5.0 237 102-382 42-296 (457)
41 3zyi_A Leucine-rich repeat-con 98.2 2.6E-07 8.8E-12 91.6 1.7 92 304-396 215-316 (452)
42 3zyi_A Leucine-rich repeat-con 98.2 2.9E-07 1E-11 91.1 2.0 181 131-332 100-296 (452)
43 1z7x_W Ribonuclease inhibitor; 98.2 1.5E-08 5.2E-13 100.5 -7.6 298 103-410 57-408 (461)
44 1ogq_A PGIP-2, polygalacturona 98.2 1.5E-07 5.2E-12 88.4 -0.3 201 103-320 51-257 (313)
45 3rfs_A Internalin B, repeat mo 98.2 4.4E-07 1.5E-11 83.4 2.3 100 131-239 42-143 (272)
46 3oja_A Leucine-rich immune mol 98.2 3.9E-07 1.3E-11 91.2 1.5 185 151-358 76-268 (487)
47 1ozn_A Reticulon 4 receptor; N 98.2 1.5E-06 5E-11 80.4 5.1 58 153-213 54-115 (285)
48 2z80_A TOLL-like receptor 2, v 98.2 2.1E-06 7E-11 82.0 6.2 132 144-286 43-183 (353)
49 3zyj_A Leucine-rich repeat-con 98.1 6.3E-07 2.2E-11 88.4 2.5 199 130-350 88-306 (440)
50 4ezg_A Putative uncharacterize 98.1 1E-06 3.5E-11 76.7 3.5 78 131-214 45-123 (197)
51 2o6q_A Variable lymphocyte rec 98.1 1.1E-06 3.7E-11 80.6 3.8 155 155-323 37-197 (270)
52 3rfs_A Internalin B, repeat mo 98.1 5.1E-07 1.8E-11 83.0 1.6 154 154-323 40-197 (272)
53 3o53_A Protein LRIM1, AGAP0063 98.1 3.1E-07 1.1E-11 86.5 -0.0 197 131-358 59-268 (317)
54 2z66_A Variable lymphocyte rec 98.1 4.6E-07 1.6E-11 84.7 0.5 173 148-332 71-254 (306)
55 3j0a_A TOLL-like receptor 5; m 98.1 8.3E-06 2.8E-10 87.2 10.2 81 131-214 74-159 (844)
56 3g06_A SSPH2 (leucine-rich rep 98.1 2.5E-06 8.6E-11 87.6 5.7 69 131-213 62-131 (622)
57 3t6q_A CD180 antigen; protein- 98.1 1.2E-06 4.1E-11 90.0 3.1 169 131-318 279-460 (606)
58 3rgz_A Protein brassinosteroid 98.1 8.3E-07 2.8E-11 94.0 1.5 210 130-358 126-349 (768)
59 2z7x_B TOLL-like receptor 1, v 98.0 1.4E-05 4.7E-10 80.4 10.0 102 130-239 21-125 (520)
60 4ecn_A Leucine-rich repeat pro 98.0 9.6E-07 3.3E-11 94.0 1.5 257 131-411 549-838 (876)
61 2ra8_A Uncharacterized protein 98.0 1.9E-06 6.5E-11 82.4 3.2 81 176-264 137-227 (362)
62 2e31_A FBS1, F-box only protei 98.0 2E-06 6.9E-11 78.7 3.2 36 25-60 49-85 (297)
63 1xku_A Decorin; proteoglycan, 98.0 4.2E-06 1.4E-10 79.0 4.9 124 131-267 77-203 (330)
64 3j0a_A TOLL-like receptor 5; m 98.0 2.4E-05 8.3E-10 83.6 11.4 84 151-239 286-372 (844)
65 2z81_A CD282 antigen, TOLL-lik 98.0 9.7E-06 3.3E-10 82.1 7.9 212 131-358 27-257 (549)
66 1xku_A Decorin; proteoglycan, 98.0 2.8E-06 9.6E-11 80.2 3.1 196 102-323 76-279 (330)
67 4eco_A Uncharacterized protein 98.0 1E-06 3.5E-11 91.1 0.1 217 130-358 305-542 (636)
68 1h6t_A Internalin B; cell adhe 98.0 1.9E-06 6.6E-11 80.0 1.9 164 131-319 47-212 (291)
69 3g06_A SSPH2 (leucine-rich rep 98.0 9.8E-06 3.4E-10 83.2 7.1 241 131-411 41-295 (622)
70 2z62_A TOLL-like receptor 4, v 97.9 1.3E-06 4.4E-11 80.3 0.4 37 175-213 49-86 (276)
71 1p9a_G Platelet glycoprotein I 97.9 1.1E-06 3.7E-11 81.6 -0.2 13 201-213 75-87 (290)
72 2ca6_A RAN GTPase-activating p 97.9 2.8E-07 9.4E-12 89.3 -4.5 17 303-319 212-228 (386)
73 4ezg_A Putative uncharacterize 97.9 3.4E-06 1.2E-10 73.3 3.0 55 154-213 43-98 (197)
74 4ecn_A Leucine-rich repeat pro 97.9 1.7E-06 5.8E-11 92.1 1.0 262 102-383 548-838 (876)
75 2o6q_A Variable lymphocyte rec 97.9 5.5E-06 1.9E-10 75.9 4.1 173 131-319 38-217 (270)
76 2xwt_C Thyrotropin receptor; s 97.9 1.4E-05 4.7E-10 71.7 6.7 60 153-214 53-116 (239)
77 2z81_A CD282 antigen, TOLL-lik 97.9 3.8E-06 1.3E-10 85.1 3.1 172 131-323 311-489 (549)
78 2ell_A Acidic leucine-rich nuc 97.9 3.8E-06 1.3E-10 71.0 2.5 103 131-239 25-130 (168)
79 1xeu_A Internalin C; cellular 97.9 6.1E-06 2.1E-10 75.3 3.6 146 151-319 37-184 (263)
80 1m9s_A Internalin B; cell inva 97.9 3.7E-06 1.3E-10 86.1 2.0 165 131-320 44-210 (605)
81 4eco_A Uncharacterized protein 97.9 3.6E-06 1.2E-10 87.0 1.9 239 130-383 330-598 (636)
82 1h6t_A Internalin B; cell adhe 97.8 1.1E-05 3.8E-10 74.7 4.7 55 154-213 45-100 (291)
83 2ft3_A Biglycan; proteoglycan, 97.8 4.7E-06 1.6E-10 78.8 2.0 124 131-268 79-205 (332)
84 1p9a_G Platelet glycoprotein I 97.8 6.8E-06 2.3E-10 76.2 2.6 102 130-239 31-134 (290)
85 1m9s_A Internalin B; cell inva 97.8 6.4E-06 2.2E-10 84.4 2.6 142 130-288 65-208 (605)
86 2z7x_B TOLL-like receptor 1, v 97.8 4.1E-05 1.4E-09 76.9 8.6 75 130-214 69-149 (520)
87 3l2o_B F-box only protein 4; s 97.8 4.3E-06 1.5E-10 75.7 0.9 35 26-60 4-38 (312)
88 3m19_A Variable lymphocyte rec 97.8 9.1E-06 3.1E-10 73.5 3.0 88 145-239 27-117 (251)
89 3goz_A Leucine-rich repeat-con 97.8 1.4E-06 4.7E-11 83.6 -2.7 58 301-358 189-259 (362)
90 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 7.9E-05 2.7E-09 75.7 10.1 54 304-358 350-409 (562)
91 2ft3_A Biglycan; proteoglycan, 97.7 5.8E-06 2E-10 78.1 1.2 173 130-323 102-280 (332)
92 2xwt_C Thyrotropin receptor; s 97.7 4.5E-05 1.5E-09 68.3 6.7 55 156-213 32-90 (239)
93 4ay9_X Follicle-stimulating ho 97.7 0.00018 6E-09 68.4 10.9 186 130-332 30-229 (350)
94 3a79_B TLR6, VLRB.59, TOLL-lik 97.7 4.8E-05 1.6E-09 77.3 7.3 124 130-267 52-180 (562)
95 1wwl_A Monocyte differentiatio 97.7 7.2E-06 2.5E-10 76.8 0.8 80 130-213 95-183 (312)
96 1ziw_A TOLL-like receptor 3; i 97.7 7.6E-06 2.6E-10 85.2 1.0 172 155-332 381-563 (680)
97 1ziw_A TOLL-like receptor 3; i 97.7 1.2E-05 4.2E-10 83.7 2.4 166 103-284 26-202 (680)
98 2z62_A TOLL-like receptor 4, v 97.7 8.3E-06 2.9E-10 74.8 0.7 127 131-268 29-161 (276)
99 2je0_A Acidic leucine-rich nuc 97.7 2.8E-06 9.7E-11 70.2 -2.3 103 131-239 18-123 (149)
100 2ell_A Acidic leucine-rich nuc 97.6 2.5E-05 8.7E-10 65.7 2.7 79 154-239 23-105 (168)
101 3m19_A Variable lymphocyte rec 97.6 1.6E-05 5.3E-10 72.0 1.2 154 155-323 14-171 (251)
102 1wwl_A Monocyte differentiatio 97.6 7.5E-06 2.6E-10 76.7 -1.0 130 131-268 122-265 (312)
103 3e4g_A ATP synthase subunit S, 97.5 6.5E-06 2.2E-10 69.6 -2.1 58 154-213 60-124 (176)
104 3v7d_B Cell division control p 97.5 2.1E-05 7.1E-10 77.5 0.9 40 24-63 12-51 (464)
105 2ra8_A Uncharacterized protein 97.5 7.5E-05 2.6E-09 71.3 4.6 121 89-212 94-228 (362)
106 3goz_A Leucine-rich repeat-con 97.5 5.1E-06 1.7E-10 79.6 -3.7 231 148-410 15-294 (362)
107 2v9t_B SLIT homolog 2 protein 97.4 0.00013 4.5E-09 64.4 4.9 65 145-214 24-91 (220)
108 1xeu_A Internalin C; cellular 97.3 1.3E-05 4.5E-10 73.1 -2.3 156 154-332 18-178 (263)
109 4glp_A Monocyte differentiatio 97.3 1.1E-05 3.6E-10 75.6 -3.1 210 103-332 65-300 (310)
110 4glp_A Monocyte differentiatio 97.3 7.2E-05 2.5E-09 69.8 2.5 56 256-319 251-306 (310)
111 3cvr_A Invasion plasmid antige 97.3 0.00014 4.8E-09 73.7 3.9 174 129-332 58-236 (571)
112 3e6j_A Variable lymphocyte rec 97.3 0.00015 5.3E-09 64.4 3.7 88 145-239 32-122 (229)
113 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.00012 4E-09 71.8 3.2 37 24-60 16-52 (445)
114 3cvr_A Invasion plasmid antige 97.2 0.00046 1.6E-08 69.9 7.4 175 103-320 60-243 (571)
115 4g8a_A TOLL-like receptor 4; l 97.2 8.1E-05 2.8E-09 76.4 1.1 57 154-213 75-134 (635)
116 2o6s_A Variable lymphocyte rec 97.2 0.00016 5.4E-09 63.1 2.7 88 145-239 20-110 (208)
117 1p22_A F-BOX/WD-repeat protein 97.1 6.3E-05 2.2E-09 73.5 0.0 36 24-59 8-47 (435)
118 1ds9_A Outer arm dynein; leuci 97.1 1.3E-05 4.4E-10 69.7 -4.7 86 145-239 38-125 (198)
119 3e4g_A ATP synthase subunit S, 97.1 0.00017 5.7E-09 60.9 2.2 82 131-215 62-151 (176)
120 2je0_A Acidic leucine-rich nuc 97.1 2.8E-05 9.5E-10 64.1 -3.0 79 154-239 16-98 (149)
121 4ay9_X Follicle-stimulating ho 97.0 0.00074 2.5E-08 64.1 6.2 87 144-239 21-114 (350)
122 1jl5_A Outer protein YOPM; leu 96.9 0.00047 1.6E-08 68.0 3.8 167 131-332 174-343 (454)
123 2o6s_A Variable lymphocyte rec 96.9 0.00041 1.4E-08 60.5 2.6 102 131-239 29-134 (208)
124 2v70_A SLIT-2, SLIT homolog 2 96.8 0.0006 2E-08 60.1 3.3 56 156-214 33-92 (220)
125 4g8a_A TOLL-like receptor 4; l 96.8 0.0013 4.5E-08 67.3 6.4 131 144-287 43-183 (635)
126 1a9n_A U2A', U2A'; complex (nu 96.8 0.00011 3.7E-09 62.4 -1.8 81 152-239 16-98 (176)
127 3e6j_A Variable lymphocyte rec 96.7 0.00052 1.8E-08 60.9 2.4 102 157-267 21-123 (229)
128 2v70_A SLIT-2, SLIT homolog 2 96.7 0.00043 1.5E-08 61.0 1.8 85 151-239 53-139 (220)
129 1a9n_A U2A', U2A'; complex (nu 96.7 0.00026 8.8E-09 60.0 0.2 100 131-239 20-123 (176)
130 2v9t_B SLIT homolog 2 protein 96.7 0.00059 2E-08 60.2 2.2 102 131-239 33-138 (220)
131 1jl5_A Outer protein YOPM; leu 96.7 0.0011 3.9E-08 65.3 4.4 171 130-332 131-303 (454)
132 1w8a_A SLIT protein; signaling 96.4 0.00085 2.9E-08 57.7 1.6 87 145-239 21-112 (192)
133 2wfh_A SLIT homolog 2 protein 96.4 0.00098 3.4E-08 57.4 1.5 56 155-213 31-88 (193)
134 2o6r_A Variable lymphocyte rec 96.3 0.0015 5.1E-08 55.2 2.4 80 155-239 28-110 (177)
135 2xot_A Amphoterin-induced prot 96.3 0.00042 1.4E-08 66.1 -1.4 84 145-239 31-122 (361)
136 3un9_A NLR family member X1; l 96.2 9.5E-05 3.2E-09 71.0 -6.5 41 301-358 205-245 (372)
137 2xot_A Amphoterin-induced prot 96.2 0.0017 5.8E-08 61.9 2.1 123 131-267 40-174 (361)
138 2wfh_A SLIT homolog 2 protein 95.6 0.0097 3.3E-07 51.0 4.3 79 131-214 32-113 (193)
139 1dce_A Protein (RAB geranylger 95.6 0.0041 1.4E-07 63.0 2.2 62 147-213 456-518 (567)
140 1w8a_A SLIT protein; signaling 95.5 0.0038 1.3E-07 53.5 1.5 97 158-267 11-113 (192)
141 2o6r_A Variable lymphocyte rec 95.5 0.011 3.8E-07 49.7 4.2 100 131-236 29-132 (177)
142 3sb4_A Hypothetical leucine ri 95.3 0.0058 2E-07 57.2 2.0 94 255-358 225-327 (329)
143 2r9u_A Variable lymphocyte rec 95.2 0.014 4.9E-07 49.0 4.0 65 145-213 25-91 (174)
144 3g39_A Variable lymphocyte rec 95.2 0.015 5.1E-07 48.7 4.0 65 145-213 22-88 (170)
145 4b8c_D Glucose-repressible alc 94.9 0.0042 1.4E-07 65.0 -0.3 58 153-213 222-280 (727)
146 1dce_A Protein (RAB geranylger 94.8 0.013 4.5E-07 59.3 3.2 82 130-215 463-545 (567)
147 4b8c_D Glucose-repressible alc 94.4 0.0092 3.1E-07 62.4 1.0 100 131-239 225-326 (727)
148 1ds9_A Outer arm dynein; leuci 94.4 0.01 3.5E-07 51.0 1.1 99 130-239 48-150 (198)
149 2ifg_A High affinity nerve gro 94.2 0.019 6.6E-07 54.0 2.4 88 144-236 21-111 (347)
150 3un9_A NLR family member X1; l 92.9 0.0021 7.2E-08 61.5 -6.7 58 155-214 101-166 (372)
151 4fdw_A Leucine rich hypothetic 92.8 0.095 3.2E-06 50.5 4.8 61 147-212 127-189 (401)
152 1io0_A Tropomodulin; LRR prote 92.5 0.027 9.3E-07 47.8 0.5 55 154-210 64-128 (185)
153 4fdw_A Leucine rich hypothetic 92.4 0.13 4.6E-06 49.4 5.3 30 302-332 295-326 (401)
154 3g39_A Variable lymphocyte rec 92.1 0.13 4.4E-06 42.8 4.2 78 131-213 31-112 (170)
155 4fs7_A Uncharacterized protein 91.8 0.034 1.1E-06 53.4 0.3 54 154-211 161-216 (394)
156 2r9u_A Variable lymphocyte rec 91.7 0.15 5.1E-06 42.6 4.2 80 130-214 33-116 (174)
157 3sb4_A Hypothetical leucine ri 87.9 0.46 1.6E-05 44.0 4.6 18 146-163 240-258 (329)
158 2ifg_A High affinity nerve gro 85.2 0.46 1.6E-05 44.3 3.0 79 131-213 32-113 (347)
159 1io0_A Tropomodulin; LRR prote 81.4 0.73 2.5E-05 38.7 2.5 111 300-410 29-161 (185)
160 3rw6_A Nuclear RNA export fact 78.0 0.49 1.7E-05 42.6 0.3 20 90-109 115-134 (267)
161 3rw6_A Nuclear RNA export fact 77.0 1.3 4.5E-05 39.7 2.8 57 302-358 191-257 (267)
162 4gt6_A Cell surface protein; l 58.1 11 0.00038 35.5 5.2 73 153-236 286-365 (394)
163 4gt6_A Cell surface protein; l 42.4 19 0.00066 33.7 4.1 98 153-266 263-367 (394)
164 4fs7_A Uncharacterized protein 41.3 15 0.0005 34.6 3.0 80 147-236 288-374 (394)
165 1pgv_A TMD-1, tropomodulin TMD 36.9 2.1 7.1E-05 36.4 -3.4 59 153-213 68-136 (197)
166 4h09_A Hypothetical leucine ri 25.5 43 0.0015 31.0 3.3 76 152-236 237-318 (379)
167 4h09_A Hypothetical leucine ri 25.4 28 0.00095 32.3 1.9 76 153-236 261-341 (379)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=7.1e-20 Score=188.79 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=33.1
Q ss_pred CCCChHHHHHHhcCC-CchhhhhhhccccchHHHhcc
Q 041388 28 SSLPDSVLCHILSYI-PTKHVVATSVIAKRWKNVWTA 63 (440)
Q Consensus 28 s~LPd~lL~~Ils~L-~~~d~~rts~lsrrWr~lw~~ 63 (440)
++||||++.+||+|| +.+|+++++.|||||++++..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 489999999999999 799999999999999998643
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=3.1e-19 Score=184.06 Aligned_cols=350 Identities=18% Similarity=0.135 Sum_probs=196.8
Q ss_pred CccCCCCChHHHHHHhcCCC-chhhhhhhccccchHHHhc-cCCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 041388 24 ADRISSLPDSVLCHILSYIP-TKHVVATSVIAKRWKNVWT-AVPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNP 101 (440)
Q Consensus 24 ~D~is~LPd~lL~~Ils~L~-~~d~~rts~lsrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 101 (440)
.|+++.||||||.+||+||| .+|+++++.|||||+++.. ....+.+.... .... ...+.+.
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--------~~~~-------~~~~~~~-- 65 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY--------AVSP-------ATVIRRF-- 65 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTT--------SSCH-------HHHHHHC--
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccc--------ccCH-------HHHHhhC--
Confidence 58999999999999999999 9999999999999998832 23345553322 1111 1223333
Q ss_pred CceeeEEEEeeCCC---------ChhhHHHHHHHHHc--CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCcccc
Q 041388 102 AKIGKFSLYCSRPT---------NLARFYDWIATALM--REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQ 169 (440)
Q Consensus 102 ~~v~~l~l~~~~~~---------~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~ 169 (440)
+.++++.++..... +...+..|+..... .++++|++..+.- ....+..+. .|++|++|+|.+|..+.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 35899988874321 12456778876654 3788888864321 112222333 47888888888443443
Q ss_pred C--CC-CcccccccceEEEE-EEeCCC--cchhhhhccCCCcceEEEeeeeCCCCCCC---cEEecccccceeEEEeecc
Q 041388 170 V--PS-SGTCFPCVKILSVR-LENPNK--SVTENLFCSCPSLEELSVTCELHDDTPPP---NLIISSATLKTCKLIVRSE 240 (440)
Q Consensus 170 ~--~~-~~~~~~~L~~L~L~-~~~~~~--~~l~~lls~cp~Le~L~L~~c~~~~~~~~---~l~i~~~~L~~L~i~~~~~ 240 (440)
. .+ ....+++|++|+|. +.+.+. ..+..+...||.|++|++.+|. ..+.+. .+...+++|++|.+. +|.
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~-~~~ 222 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN-RAV 222 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC-TTS
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC-CCC
Confidence 3 11 12367888888888 776621 2355556678888888888774 111001 111235788888887 661
Q ss_pred cccccccccEEEEecCCceEEEEecccc-------c--cEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccE
Q 041388 241 DMLFREVDYMLTITAPKLESLEIYSDLL-------G--SFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY 311 (440)
Q Consensus 241 ~~~~~~~~~~l~~~~p~L~~L~~~~~~~-------~--~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~ 311 (440)
. .. +...+...+|+|++|.+.++.. . ...+.++++|+.+. ..... ..... ..++..+++++.
T Consensus 223 ~--~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~-~~~~l---~~~~~~~~~L~~ 293 (594)
T 2p1m_B 223 P--LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDA-VPAYL---PAVYSVCSRLTT 293 (594)
T ss_dssp C--HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTC-CGGGG---GGGHHHHTTCCE
T ss_pred c--HH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--CCccc-chhhH---HHHHHhhCCCCE
Confidence 1 11 1112222467788887543311 0 01245677777652 10000 00000 344457889999
Q ss_pred EEEeccceeEee------ecccccccc-cccccchhHHHHHHHhccCCCccccc-ccc--------CC-CC-Ccc---cc
Q 041388 312 LYLSAGIMSSVE------LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLE--------SD-FD-VPH---CL 370 (440)
Q Consensus 312 L~l~~~~~~~~~------~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~--------~~-~~-~~~---c~ 370 (440)
|.++...+.... .+++|++|. ..+ .....+..+...||+|++|. ..+ .. .. ... ..
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY---IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG---GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc---cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 999766533211 456666666 322 34556778888899999996 211 11 00 000 01
Q ss_pred ccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEE
Q 041388 371 VHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMW 408 (440)
Q Consensus 371 ~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~ 408 (440)
..+|+.+.+. +....+ ..+..+.++++.|+.+.+.
T Consensus 371 ~~~L~~L~~~-~~~l~~--~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 371 CPKLESVLYF-CRQMTN--AALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CTTCCEEEEE-ESCCCH--HHHHHHHHHCTTCCEEEEE
T ss_pred chhHHHHHHh-cCCcCH--HHHHHHHhhCCCcceeEee
Confidence 3678888543 222222 3455666788999999998
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=1.3e-16 Score=152.53 Aligned_cols=164 Identities=19% Similarity=0.184 Sum_probs=90.3
Q ss_pred ccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc---CCeeEeecCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 041388 25 DRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA---VPNLSFDDRLCLRPPASTYVPLRGFADFVHTVLLRTNP 101 (440)
Q Consensus 25 D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 101 (440)
..+++||||++.+||++|+.+|+++++.|||+|+++... +..+++.... .. ...+...+.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~--------~~-----~~~~~~~~~---- 69 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN--------LH-----PDVTGRLLS---- 69 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB--------CC-----HHHHHHHHH----
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecccccc--------CC-----HHHHHhhhh----
Confidence 458999999999999999999999999999999998632 3345443322 11 122222221
Q ss_pred CceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CCCccccc
Q 041388 102 AKIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PSSGTCFP 178 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~~~~~~~ 178 (440)
..++.+.+....-.. ... .....++++|++..+.-....+|..+..+++|++|+|.+ +.+.. +.....++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT-CBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC-cccCHHHHHHHhcCC
Confidence 134444443211110 000 001135666665322100111444445566777777763 33321 11233466
Q ss_pred ccceEEEE-E-EeCCCcchhhhhccCCCcceEEEeee
Q 041388 179 CVKILSVR-L-ENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 179 ~L~~L~L~-~-~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+|++|+|. + .+. +..+..++..||.|++|++.+|
T Consensus 143 ~L~~L~L~~~~~l~-~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 143 NLVRLNLSGCSGFS-EFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TCSEEECTTCBSCC-HHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCEEECCCCCCCC-HHHHHHHHhcCCCCCEEcCCCC
Confidence 67777776 5 344 4455666666777777777665
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.87 E-value=4.9e-09 Score=99.47 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCC
Q 041388 126 TALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCP 203 (440)
Q Consensus 126 ~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp 203 (440)
.....+++.|++.... ...+|..++.+++|++|+|.++ .+.. |.....+++|++|+|. ..+. .+..-+..++
T Consensus 77 ~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~ 150 (328)
T 4fcg_A 77 DATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLN 150 (328)
T ss_dssp HHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCT
T ss_pred cccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCc
Confidence 3334467777775432 2367777888888888888843 3333 3345678888888888 7665 2344577888
Q ss_pred CcceEEEeeee
Q 041388 204 SLEELSVTCEL 214 (440)
Q Consensus 204 ~Le~L~L~~c~ 214 (440)
.|+.|+|.+|.
T Consensus 151 ~L~~L~L~~n~ 161 (328)
T 4fcg_A 151 RLRELSIRACP 161 (328)
T ss_dssp TCCEEEEEEET
T ss_pred CCCEEECCCCC
Confidence 88888888874
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.80 E-value=3e-09 Score=101.58 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=28.1
Q ss_pred ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+..+++|++|+|. ...+...+....+++|++|+|. +.+. +. .. +..++.|+.|.+.+|
T Consensus 84 ~~~l~~L~~L~L~-~n~i~~~~~~~~l~~L~~L~l~~n~i~-~~--~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIG-TNKITDISALQNLTNLRELYLNEDNIS-DI--SP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECC-SSCCCCCGGGTTCTTCSEEECTTSCCC-CC--GG-GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEcc-CCcccCchHHcCCCcCCEEECcCCccc-Cc--hh-hccCCceeEEECCCC
Confidence 3345555555555 3333333334445555555555 4444 11 11 445555555555554
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=3.4e-09 Score=108.78 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=66.9
Q ss_pred CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCc-eeecCccccccccccEEEecCCccccCCC------Cc
Q 041388 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQS-RVELPEAIYSAACLKVLTLDSDFSIQVPS------SG 174 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~l~~~~------~~ 174 (440)
+.++++.++... .....+...... -.++++|++..+... ...++..+..|++|++|+|. .+.+.... ..
T Consensus 105 ~~L~~L~L~~~~-~~~~~~~~l~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMV-VTDDCLELIAKS--FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-ESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCB-CCHHHHHHHHHH--CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT-TCEEECCCGGGGGGSC
T ss_pred CCCCeEEeeCcE-EcHHHHHHHHHh--CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc-CCccCCcchHHHHHHh
Confidence 368898888643 222222222111 248999999754321 11244444468999999999 44444321 12
Q ss_pred ccccccceEEEE-EE--eCCCcchhhhhccCCCcceEEEeee
Q 041388 175 TCFPCVKILSVR-LE--NPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 175 ~~~~~L~~L~L~-~~--~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
..+++|++|+|. +. +. +..+..++..||.|+.|.|.+|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~-~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVS-FSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCC-HHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCC-HHHHHHHHHhCCCCcEEecCCC
Confidence 356789999998 75 43 5667777788888998888876
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.73 E-value=1.3e-09 Score=111.86 Aligned_cols=295 Identities=14% Similarity=0.017 Sum_probs=177.4
Q ss_pred HHHHhcCCCCceeeEEEEeeCC---------CChhhHHHHHHHHHc--CCcEEEEEEEccCceeecCccccc-ccc-ccE
Q 041388 93 HTVLLRTNPAKIGKFSLYCSRP---------TNLARFYDWIATALM--REVGEIQLYLGQQSRVELPEAIYS-AAC-LKV 159 (440)
Q Consensus 93 ~~~L~~~~~~~v~~l~l~~~~~---------~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~~~~lp~~l~~-~~~-L~~ 159 (440)
..++.+.+ .++++.++.... ........|+..... .++++|++..+.- ....+..+.. +++ |++
T Consensus 66 ~~~~~~~~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i-~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 66 DRLSRRFP--NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV-SDLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHCT--TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHHGGGCCE
T ss_pred HHHHHhCC--CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEe-cHHHHHHHHHhccccCcE
Confidence 34444444 499999976332 124455678776653 4899999875421 1122233333 455 999
Q ss_pred EEecCCccccCCC---CcccccccceEEEE-EEeCCCcc---hhhhhccCCCcceEEEeeeeCCCCCCCcE---Eecccc
Q 041388 160 LTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSV---TENLFCSCPSLEELSVTCELHDDTPPPNL---IISSAT 229 (440)
Q Consensus 160 L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~---l~~lls~cp~Le~L~L~~c~~~~~~~~~l---~i~~~~ 229 (440)
|+|.++..+.... ...++++|++|+|. +.+. +.+ +..+...||.|+.|++.++.........+ ...+++
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 9998443232211 12367899999999 8876 333 66778889999999998764321100111 124588
Q ss_pred cceeEEEeecccccccccccEEEEecCCceEEEEeccccc------cEEeeCCCCeeEEEEEEeecccccCCchhhhhhh
Q 041388 230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG------SFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLL 303 (440)
Q Consensus 230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l 303 (440)
|++|.+. +| .+.. ........|+|++|.+.+.... ...+..+++|+.+.+..... ... ..++
T Consensus 222 L~~L~L~-~~---~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~l---~~~~ 289 (592)
T 3ogk_B 222 LVSVKVG-DF---EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP----NEM---PILF 289 (592)
T ss_dssp CCEEECS-SC---BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT----TTG---GGGG
T ss_pred CcEEecc-Cc---cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch----hHH---HHHH
Confidence 9999998 76 2211 1222334688999998642211 12345677888776633211 111 4456
Q ss_pred cccccccEEEEeccceeEe------eecccccccc-cccccchhHHHHHHHhccCCCccccc-cc----------cCC-C
Q 041388 304 AGINSCKYLYLSAGIMSSV------ELHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WL----------ESD-F 364 (440)
Q Consensus 304 ~~~~~l~~L~l~~~~~~~~------~~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~----------~~~-~ 364 (440)
..+++++.|.++...+... ..+++|+.|+ . . ......+..++..||+|++|. .. |.. .
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-N--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-G--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-C--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 7889999999987653221 1566777776 5 3 455677888899999999998 62 211 1
Q ss_pred C--Ccc--ccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEe
Q 041388 365 D--VPH--CLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWA 409 (440)
Q Consensus 365 ~--~~~--c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~ 409 (440)
. ... ....+|+.+.+. +....+ ..+..+.++++.|+.+.+..
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~-~~~l~~--~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVY-VSDITN--ESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEE-ESCCCH--HHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHHHHhhCccCeEEEee-cCCccH--HHHHHHHhhCCCCcEEEEee
Confidence 0 111 113689999883 222222 44556667899999999974
No 8
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.72 E-value=5.5e-09 Score=70.17 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=34.1
Q ss_pred CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhc
Q 041388 24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWT 62 (440)
Q Consensus 24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~ 62 (440)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999998653
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.70 E-value=1.2e-08 Score=97.26 Aligned_cols=267 Identities=11% Similarity=0.072 Sum_probs=143.7
Q ss_pred CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK 181 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~ 181 (440)
+.++.+.+....-..... ...-.+++.|++..+. ...+| .+..+++|++|+|. ...+...+....+++|+
T Consensus 66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~--i~~~~-~~~~l~~L~~L~l~-~n~i~~~~~~~~l~~L~ 135 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNK--ITDIS-ALQNLTNLRELYLN-EDNISDISPLANLTKMY 135 (347)
T ss_dssp TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC--CCCCG-GGTTCTTCSEEECT-TSCCCCCGGGTTCTTCC
T ss_pred CCccEEEccCCccccchh------hhcCCcCCEEEccCCc--ccCch-HHcCCCcCCEEECc-CCcccCchhhccCCcee
Confidence 357777776543322111 1122478888775432 12233 45668888888888 44454444366778888
Q ss_pred eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceE
Q 041388 182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES 260 (440)
Q Consensus 182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~ 260 (440)
+|++. +....+ +.. +..++.|++|.+.+|..... .. .-..++|+.|.+. +| .+.. ... ....++|+.
T Consensus 136 ~L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~-~n---~l~~-~~~-~~~l~~L~~ 203 (347)
T 4fmz_A 136 SLNLGANHNLSD--LSP-LSNMTGLNYLTVTESKVKDV--TP-IANLTDLYSLSLN-YN---QIED-ISP-LASLTSLHY 203 (347)
T ss_dssp EEECTTCTTCCC--CGG-GTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECT-TS---CCCC-CGG-GGGCTTCCE
T ss_pred EEECCCCCCccc--ccc-hhhCCCCcEEEecCCCcCCc--hh-hccCCCCCEEEcc-CC---cccc-ccc-ccCCCccce
Confidence 88888 643311 222 67788888888888754333 22 1134678888887 66 2211 111 123567777
Q ss_pred EEEeccccccEE-eeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-ccc
Q 041388 261 LEIYSDLLGSFV-MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMA 335 (440)
Q Consensus 261 L~~~~~~~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~ 335 (440)
|.++++...... +..+++|+.+++....... ...+..+++++.|.++.+.+..+. .+++|+.|. ..+
T Consensus 204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITD--------LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred eecccCCCCCCchhhcCCcCCEEEccCCccCC--------CcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 777765433221 5567777777775543321 112566777788777766555444 344445444 222
Q ss_pred ccchhHHHHHHHhccCCCccccc-cccCC-CCCcc--ccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEe
Q 041388 336 STANRAKKLTELGKSCPAQEQFG-WLESD-FDVPH--CLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWA 409 (440)
Q Consensus 336 ~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~~~~--c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~ 409 (440)
... .+ ..+..+|+|+.|. ..+.- ...+. ....+|+.+.+.+..-..- .. +...+.|+.+.+..
T Consensus 276 --~l~--~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 276 --QIS--DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI-RP-----LASLSKMDSADFAN 342 (347)
T ss_dssp --CCC--CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC-GG-----GGGCTTCSEESSSC
T ss_pred --ccC--CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc-cC-----hhhhhccceeehhh
Confidence 111 11 2356677777777 42221 11111 1245677777765432111 11 45567777766543
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.63 E-value=4.5e-08 Score=97.48 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK 181 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~ 181 (440)
..++.+.+....-..... ...-.++++|++..+. ...++. +..+++|++|+|. ...+...+....+++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~-~n~l~~~~~~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQ--IADITP-LANLTNLTGLTLF-NNQITDIDPLKNLTNLN 137 (466)
T ss_dssp TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC--CCCCGG-GTTCTTCCEEECC-SSCCCCCGGGTTCTTCS
T ss_pred cCCCEEECCCCccCCchh------hhccccCCEEECCCCc--cccChh-hcCCCCCCEEECC-CCCCCCChHHcCCCCCC
Confidence 357777776544322111 1122478888775432 233444 6668889999998 44554444366788899
Q ss_pred eEEEE-EEeCCCcchhhhhccCCCcceEEEee
Q 041388 182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTC 212 (440)
Q Consensus 182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~ 212 (440)
+|+|. +.+.+-. -+..++.|+.|.+.+
T Consensus 138 ~L~l~~n~l~~~~----~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 138 RLELSSNTISDIS----ALSGLTSLQQLSFGN 165 (466)
T ss_dssp EEEEEEEEECCCG----GGTTCTTCSEEEEEE
T ss_pred EEECCCCccCCCh----hhccCCcccEeecCC
Confidence 99999 8877221 245566666666644
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.62 E-value=4.2e-08 Score=95.26 Aligned_cols=135 Identities=13% Similarity=0.014 Sum_probs=63.7
Q ss_pred CCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecc---cccc
Q 041388 256 PKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGR 330 (440)
Q Consensus 256 p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~ 330 (440)
++|++|.++++..........++|+.+++....... ...+..+++++.|.++.+.+.... .|. +|+.
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCcc--------cHHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 456666665554444433344556655554433211 234566777777777776665543 333 3333
Q ss_pred cc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccc--cccceeEEEEEeeecCcchHHHHHHHHhhccccceEE
Q 041388 331 TD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHC--LVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKML 406 (440)
Q Consensus 331 L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c--~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~ 406 (440)
|. ... ....+......+|+|+.|. ..+.-...+.. ...+|+.+.+.+-.-..- . +...+.|+.+.
T Consensus 277 L~L~~n----~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~--~-----~~~~~~L~~L~ 345 (390)
T 3o6n_A 277 LYISNN----RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K-----LSTHHTLKNLT 345 (390)
T ss_dssp EECCSS----CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C-----CCTTCCCSEEE
T ss_pred EECCCC----cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee--C-----chhhccCCEEE
Confidence 33 221 1111122234567777776 32211122211 235566666654321111 1 34556677776
Q ss_pred EEe
Q 041388 407 MWA 409 (440)
Q Consensus 407 i~~ 409 (440)
+..
T Consensus 346 l~~ 348 (390)
T 3o6n_A 346 LSH 348 (390)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=5.2e-08 Score=96.98 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=142.8
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.|++..+. ...+|. +..+++|++|+|. ...+...+....+++|++|+|. +.+. +. .. +..++.|++|
T Consensus 68 ~~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~L~~n~l~-~~--~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQ--LTDITP-LKNLTKLVDILMN-NNQIADITPLANLTNLTGLTLFNNQIT-DI--DP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC-CC--GG-GTTCTTCSEE
T ss_pred cCCCEEECCCCc--cCCchh-hhccccCCEEECC-CCccccChhhcCCCCCCEEECCCCCCC-CC--hH-HcCCCCCCEE
Confidence 477777775332 233444 5567888888888 4444433336677888888888 7665 22 12 6778888888
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM 287 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~ 287 (440)
++.+|....+ .. --..++|+.|.+. ++.. .. .. ....++|++|.++++..... .+..+++|+.+.+...
T Consensus 140 ~l~~n~l~~~--~~-~~~l~~L~~L~l~-~~~~-~~----~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 140 ELSSNTISDI--SA-LSGLTSLQQLSFG-NQVT-DL----KP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp EEEEEEECCC--GG-GTTCTTCSEEEEE-ESCC-CC----GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred ECCCCccCCC--hh-hccCCcccEeecC-Cccc-Cc----hh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCC
Confidence 8888754333 21 1124677888776 4310 01 11 12357888888877654322 2456778888777554
Q ss_pred ecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccC
Q 041388 288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLES 362 (440)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~ 362 (440)
.... ...+..+++++.|.++.+.+..+. .+++|+.|+ ..+ .-..... +..+++|+.|. ..+.
T Consensus 210 ~l~~--------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 210 QISD--------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP----LSGLTKLTELKLGANQ 276 (466)
T ss_dssp CCCC--------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG----GTTCTTCSEEECCSSC
T ss_pred cccc--------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh----hhcCCCCCEEECCCCc
Confidence 3321 112456788999998877666554 445555555 332 0111111 67788888888 4322
Q ss_pred CCCC-ccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388 363 DFDV-PHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKA 411 (440)
Q Consensus 363 ~~~~-~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~ 411 (440)
-... +-....+|+.+.+.+..-..-. . +.+.+.|+.+.+....
T Consensus 277 l~~~~~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 277 ISNISPLAGLTALTNLELNENQLEDIS-P-----ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSCCSCCG-G-----GGGCTTCSEEECCSSC
T ss_pred cCccccccCCCccCeEEcCCCcccCch-h-----hcCCCCCCEEECcCCc
Confidence 1111 2334577888888754322111 1 5688999999997754
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=5.8e-08 Score=99.82 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=35.8
Q ss_pred hcccccccEEEEeccceeEee----ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccccccceeE
Q 041388 303 LAGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKN 376 (440)
Q Consensus 303 l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~ 376 (440)
+..+++++.|.|+.+.+..++ .+++|+.|+ ..+ ... .+..-+..+|+|+.|. ..+.-...+.....+|+.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~ 349 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLL--HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN 349 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCC--CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSE
T ss_pred hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCC--ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCE
Confidence 445666666666666555444 344555555 322 111 1222234456677666 322112223333456777
Q ss_pred EEEEe
Q 041388 377 IEIKG 381 (440)
Q Consensus 377 v~i~~ 381 (440)
+.+.+
T Consensus 350 L~l~~ 354 (597)
T 3oja_B 350 LTLSH 354 (597)
T ss_dssp EECCS
T ss_pred EEeeC
Confidence 77754
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.49 E-value=4.3e-07 Score=86.77 Aligned_cols=248 Identities=14% Similarity=0.092 Sum_probs=148.8
Q ss_pred CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
.++++|++... ....+|. .+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+. . .-...+..++.|
T Consensus 52 ~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS-N-LSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-S-CCHHHHTTCTTC
T ss_pred ccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC-c-CCHhHhCCCccC
Confidence 36777777432 2334555 4556899999999944 4433 22 35678999999999 8776 2 233457789999
Q ss_pred ceEEEeeeeCCCCCCCc--EEecccccceeEEEeecccccccccccEEE----EecCCceEEEEeccccccE---EeeCC
Q 041388 206 EELSVTCELHDDTPPPN--LIISSATLKTCKLIVRSEDMLFREVDYMLT----ITAPKLESLEIYSDLLGSF---VMHDL 276 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~--l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~~~~~---~~~~~ 276 (440)
++|++.++....+ .. .--..++|+.|.+. +|.. + ..+. -..++|++|.++++..... .+.++
T Consensus 127 ~~L~L~~n~l~~l--~~~~~~~~l~~L~~L~l~-~n~~--~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 127 TFLNLLGNPYKTL--GETSLFSHLTKLQILRVG-NMDT--F----TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp SEEECTTCCCSSS--CSSCSCTTCTTCCEEEEE-ESSS--C----CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CEEECCCCCCccc--CchhhhccCCCCcEEECC-CCcc--c----cccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 9999988754333 11 11235789999998 6611 1 1111 1357899999987654433 24567
Q ss_pred CCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--------ecccccccc-cc-cccchhHHHHHH
Q 041388 277 HSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--------LHRNGGRTD-RM-ASTANRAKKLTE 346 (440)
Q Consensus 277 ~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--------~f~~L~~L~-~~-~~~~~~~~~l~~ 346 (440)
++|+.+++...... ... ..+...+++++.|.++.+.+.... ....++.+. .. .-.......+..
T Consensus 198 ~~L~~L~l~~n~l~----~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 198 QNVSHLILHMKQHI----LLL--EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp SEEEEEEEECSCST----THH--HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ccCCeecCCCCccc----cch--hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 88888887654431 110 334556889999999887655332 233444444 11 101333445677
Q ss_pred HhccCCCccccc-cccCCCCCcc---ccccceeEEEEEee--ecCcchHHHHHHHHh
Q 041388 347 LGKSCPAQEQFG-WLESDFDVPH---CLVHTVKNIEIKGV--QGDEDERPLLKYLLQ 397 (440)
Q Consensus 347 lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~~v~i~~~--~~~~~~~~~~~~ll~ 397 (440)
.+..+++|+.|. ..+.=...|. ....+|+.+.+.+- .+....+..+...++
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~ 328 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 328 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHH
Confidence 788999999998 4321122332 22467888888753 344434555444333
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.47 E-value=2.3e-07 Score=87.82 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=118.3
Q ss_pred CceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccc
Q 041388 102 AKIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPC 179 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~ 179 (440)
..+..+.+....-.. ...+ .. -.+++.|++.... ...+|..+..+++|++|+|.++ .+.. |.....+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l----~~--l~~L~~L~L~~n~--l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQA----FR--LSHLQHMTIDAAG--LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCG----GG--GTTCSEEEEESSC--CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTT
T ss_pred cceeEEEccCCCchhcChhh----hh--CCCCCEEECCCCC--ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcC
Confidence 468888888644332 2211 11 2489999997543 2378888888999999999944 4444 335668899
Q ss_pred cceEEEE-EEeCCCc--ch-----hhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEE
Q 041388 180 VKILSVR-LENPNKS--VT-----ENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYML 251 (440)
Q Consensus 180 L~~L~L~-~~~~~~~--~l-----~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l 251 (440)
|++|+|. +.+.+.- .+ ...+.+++.|+.|.|.++....+ ...--..++|+.|.+. +| .+......
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~-~N---~l~~l~~~- 224 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIR-NS---PLSALGPA- 224 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEE-SS---CCCCCCGG-
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEcc-CC---CCCcCchh-
Confidence 9999999 7665211 11 11234699999999999854333 1111134789999998 77 23210111
Q ss_pred EEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecc
Q 041388 252 TITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAG 317 (440)
Q Consensus 252 ~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~ 317 (440)
.-..|+|++|.++++.... ..+.++++|+.+++..+..... . ...+..+++++.|.|+.+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~----p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT--L----PLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB--C----CTTGGGCTTCCEEECTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh--c----chhhhcCCCCCEEeCCCC
Confidence 1136889999998754322 1245567777776654332110 0 122456677777777653
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.44 E-value=8.3e-08 Score=93.13 Aligned_cols=229 Identities=12% Similarity=0.046 Sum_probs=102.2
Q ss_pred cccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccc
Q 041388 152 YSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSA 228 (440)
Q Consensus 152 ~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 228 (440)
..+++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+. ..-..++..++.|++|.+.++......+.. --..+
T Consensus 90 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 165 (390)
T 3o6n_A 90 AYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATT 165 (390)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCT
T ss_pred cCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCC
Confidence 3456666666663 22222 22 23455666666666 5444 111233455566666666655321110000 01224
Q ss_pred ccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388 229 TLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN 307 (440)
Q Consensus 229 ~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 307 (440)
+|+.|.+. ++ .+. .+. -..|+|+.|.++++....+ ...++|+.+++....... -.....+
T Consensus 166 ~L~~L~l~-~n---~l~----~~~~~~l~~L~~L~l~~n~l~~~--~~~~~L~~L~l~~n~l~~---------~~~~~~~ 226 (390)
T 3o6n_A 166 SLQNLQLS-SN---RLT----HVDLSLIPSLFHANVSYNLLSTL--AIPIAVEELDASHNSINV---------VRGPVNV 226 (390)
T ss_dssp TCCEEECC-SS---CCS----BCCGGGCTTCSEEECCSSCCSEE--ECCSSCSEEECCSSCCCE---------EECCCCS
T ss_pred CCCEEECC-CC---cCC----ccccccccccceeeccccccccc--CCCCcceEEECCCCeeee---------ccccccc
Confidence 56666665 44 111 001 1135566666555433221 223445544443322110 0012235
Q ss_pred cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc--ccccceeEEEEE
Q 041388 308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH--CLVHTVKNIEIK 380 (440)
Q Consensus 308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~--c~~~~L~~v~i~ 380 (440)
+++.|.++.+.+.... .+++|+.|+ ... ... ......+..+++|+.|. ..+.-...+. ....+|+.+.+.
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--ELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred cccEEECCCCCCcccHHHcCCCCccEEECCCC--cCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 6777777766555444 344555554 222 110 01123455677777777 3221111111 234678888887
Q ss_pred eeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388 381 GVQGDEDERPLLKYLLQFAAAMEKMLMWAKA 411 (440)
Q Consensus 381 ~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~ 411 (440)
+..-..-... +...+.|+.+.+....
T Consensus 304 ~n~l~~~~~~-----~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 304 HNHLLHVERN-----QPQFDRLENLYLDHNS 329 (390)
T ss_dssp SSCCCCCGGG-----HHHHTTCSEEECCSSC
T ss_pred CCcceecCcc-----ccccCcCCEEECCCCc
Confidence 5432211111 2345789988886543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.41 E-value=5.4e-07 Score=91.80 Aligned_cols=121 Identities=13% Similarity=0.097 Sum_probs=57.3
Q ss_pred cCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE
Q 041388 147 LPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI 224 (440)
Q Consensus 147 lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~ 224 (440)
.|..+..+++|++|++. ...+...+ ....+ +|++|++. +.+. .-.. ..++.|+.|.+.++..... .. .
T Consensus 274 ~~~~~~~l~~L~~L~l~-~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L~l~~n~~~~~--~~-~ 343 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLV-SVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRLTFTSNKGGNA--FS-E 343 (570)
T ss_dssp STTTTGGGTTCSEEEEE-SCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEEEEESCBSCCB--CC-C
T ss_pred chhhhcCcCcccEEEec-CccchhhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEEeCcCCccccc--cc-c
Confidence 44445556677777776 33333322 23334 66666666 5554 1111 3566666666666543211 00 1
Q ss_pred ecccccceeEEEeecccccccccccEEE------EecCCceEEEEeccccccE--EeeCCCCeeEEEEE
Q 041388 225 ISSATLKTCKLIVRSEDMLFREVDYMLT------ITAPKLESLEIYSDLLGSF--VMHDLHSLKIVKLD 285 (440)
Q Consensus 225 i~~~~L~~L~i~~~~~~~~~~~~~~~l~------~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~i~ 285 (440)
...++|+.|++. +| .+ ..+. ...++|++|.++++..... .+.++++|+.+++.
T Consensus 344 ~~~~~L~~L~l~-~n---~l----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 344 VDLPSLEFLDLS-RN---GL----SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp CBCTTCCEEECC-SS---CC----BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred ccCCCCCEEeCc-CC---cc----CccccccccccccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence 234566666665 44 11 1110 1245666666655432221 14455666655553
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.40 E-value=1.3e-07 Score=94.23 Aligned_cols=80 Identities=9% Similarity=0.061 Sum_probs=39.5
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
+++.|++.... .....|..+..+++|++|+|.++..... +.....+++|++|+|. ..+. . .....+..++.|+.|
T Consensus 105 ~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 105 NLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-S-IPTEALSHLHGLIVL 181 (477)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-S-CCHHHHTTCTTCCEE
T ss_pred CCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-c-cChhHhcccCCCcEE
Confidence 55555553211 0112233344466666666663221111 1134456667777776 6554 1 223345566666666
Q ss_pred EEeee
Q 041388 209 SVTCE 213 (440)
Q Consensus 209 ~L~~c 213 (440)
.|.++
T Consensus 182 ~l~~n 186 (477)
T 2id5_A 182 RLRHL 186 (477)
T ss_dssp EEESC
T ss_pred eCCCC
Confidence 66665
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.39 E-value=7.2e-08 Score=90.48 Aligned_cols=139 Identities=14% Similarity=0.082 Sum_probs=79.1
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
++++|++..+. ...+| .+..+++|++|+|. +..+...+....+++|+.|+|. ..+. +- . -+..++.|+.|.
T Consensus 42 ~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~-~n~i~~~~~~~~l~~L~~L~L~~n~l~-~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 42 GITTLSAFGTG--VTTIE-GVQYLNNLIGLELK-DNQITDLAPLKNLTKITELELSGNPLK-NV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp TCCEEECTTSC--CCCCT-TGGGCTTCCEEECC-SSCCCCCGGGTTCCSCCEEECCSCCCS-CC--G-GGTTCTTCCEEE
T ss_pred CcCEEEeeCCC--ccCch-hhhccCCCCEEEcc-CCcCCCChhHccCCCCCEEEccCCcCC-Cc--h-hhcCCCCCCEEE
Confidence 67777764321 23344 45567888888888 4445443336677888888888 7766 22 1 366788888888
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE-eeCCCCeeEEEEEE
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV-MHDLHSLKIVKLDI 286 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~ 286 (440)
+.+|....+ .. --..++|+.|.+. +| .+.. ... .-..++|++|.++++...... +.++++|+.+++..
T Consensus 114 l~~n~l~~~--~~-l~~l~~L~~L~l~-~n---~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 114 LTSTQITDV--TP-LAGLSNLQVLYLD-LN---QITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182 (308)
T ss_dssp CTTSCCCCC--GG-GTTCTTCCEEECC-SS---CCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCCCc--hh-hcCCCCCCEEECC-CC---ccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence 888754333 21 1123678888777 65 2211 111 113467777777665432211 34455555555433
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.39 E-value=8.1e-08 Score=89.89 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=124.4
Q ss_pred eecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
..+|..+. ++|++|+|. ...+...+ ....+++|++|+|. ..+.........+..++.|++|+|.++....+ .
T Consensus 20 ~~ip~~~~--~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l--~ 94 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--S 94 (306)
T ss_dssp SSCCSCCC--TTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE--E
T ss_pred ccCCCCCC--CCCCEEECC-CCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC--h
Confidence 44555333 578888888 44444433 24567888888888 66552222233445678888888887632111 1
Q ss_pred cEEecccccceeEEEeeccccccccccc-EEEEecCCceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCch
Q 041388 222 NLIISSATLKTCKLIVRSEDMLFREVDY-MLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPY 297 (440)
Q Consensus 222 ~l~i~~~~L~~L~i~~~~~~~~~~~~~~-~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~ 297 (440)
.-....++|+.|.+. ++ .+..... ......++|++|.++++..... .+.++++|+.+++........ ..
T Consensus 95 ~~~~~l~~L~~L~l~-~n---~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~- 167 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQ-HS---NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FL- 167 (306)
T ss_dssp EEEETCTTCCEEECT-TS---EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EE-
T ss_pred hhcCCCCCCCEEECC-CC---cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cc-
Confidence 111234778888877 55 2211000 0112357788888876543221 245567787777644332100 00
Q ss_pred hhhhhhcccccccEEEEeccceeEee--ecc---cccccc-cccccchhHHHHHHHhccCCCccccc-cccCC-CCCc--
Q 041388 298 RAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESD-FDVP-- 367 (440)
Q Consensus 298 ~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~~~-- 367 (440)
...+..+++++.|.++.+.+..+. .|. +|+.|+ ... .... .....+..+++|+.|. ..+.- ...+
T Consensus 168 --~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 168 --PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp --CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred --hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC--ccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 233567788999999888776663 344 444444 222 1100 0011256788899888 43211 1111
Q ss_pred -cccccceeEEEEEe--eecCcchHHHHHHH
Q 041388 368 -HCLVHTVKNIEIKG--VQGDEDERPLLKYL 395 (440)
Q Consensus 368 -~c~~~~L~~v~i~~--~~~~~~~~~~~~~l 395 (440)
.....+|+.+.+.+ +.+......+.+++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 11225789998874 44555444555554
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.36 E-value=3e-07 Score=90.97 Aligned_cols=81 Identities=20% Similarity=0.118 Sum_probs=48.0
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
++++|++..+. -....|..+..+++|++|+|. ...+.. +. ....+++|++|+|. ..+. ...-..++..++.|
T Consensus 80 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L 156 (455)
T 3v47_A 80 SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLT-QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRF 156 (455)
T ss_dssp TCCEEECTTCT-TCEECTTTTTTCTTCCEEECT-TSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTC
T ss_pred cCCEEeCCCCc-cCccChhhccCcccCCEEeCC-CCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcc
Confidence 66777664321 112335555567788888887 434432 11 24567778888887 6665 33233446677888
Q ss_pred ceEEEeeee
Q 041388 206 EELSVTCEL 214 (440)
Q Consensus 206 e~L~L~~c~ 214 (440)
++|++.++.
T Consensus 157 ~~L~L~~n~ 165 (455)
T 3v47_A 157 HVLDLTFNK 165 (455)
T ss_dssp CEEECTTCC
T ss_pred cEEeCCCCc
Confidence 888887764
No 22
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.35 E-value=1.2e-08 Score=96.89 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=27.1
Q ss_pred ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 155 ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
++++.|++.++..-..++....+++|++|+|. +.+. +..+..++..||.|++|+|.+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE-VSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEEC-HHHHHHHHTTBCCCSEEECTTC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcC-HHHHHHHHhhCCCCCEEeCcCc
Confidence 44555555522211112223344555555555 5444 3334455555555555555554
No 23
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.34 E-value=5.3e-09 Score=103.83 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=15.8
Q ss_pred ccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeee
Q 041388 179 CVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 179 ~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c 213 (440)
+|++|+|. +.+. +. .+...+..|+.|++|+|.++
T Consensus 86 ~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 86 KIQKLSLQNCCLT-GAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp CCCEEECTTSCCB-GGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ceeEEEccCCCCC-HHHHHHHHHHHccCCceeEEECCCC
Confidence 35555555 4444 21 23333445555555555544
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.34 E-value=5.2e-07 Score=91.88 Aligned_cols=239 Identities=15% Similarity=0.053 Sum_probs=117.4
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++..+. ...+|..+..+ +|++|++. ...+...+ ...+++|+.|.+. ..+..... . ..+|.|++|+
T Consensus 283 ~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~-~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~--~--~~~~~L~~L~ 353 (570)
T 2z63_A 283 NVSSFSLVSVT--IERVKDFSYNF-GWQHLELV-NCKFGQFP-TLKLKSLKRLTFTSNKGGNAFS--E--VDLPSLEFLD 353 (570)
T ss_dssp TCSEEEEESCE--ECSCCBCCSCC-CCSEEEEE-SCBCSSCC-BCBCSSCCEEEEESCBSCCBCC--C--CBCTTCCEEE
T ss_pred cccEEEecCcc--chhhhhhhccC-CccEEeec-cCcccccC-cccccccCEEeCcCCccccccc--c--ccCCCCCEEe
Confidence 45555553221 23466666666 77777777 44454444 3567777777777 65541111 1 5677777777
Q ss_pred EeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc----EEeeCCCCe
Q 041388 210 VTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS----FVMHDLHSL 279 (440)
Q Consensus 210 L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~----~~~~~~~~L 279 (440)
+.++.. ..+. ...++|+.|.+. +| .+.. ...-....++|++|.++++.... ..+.++++|
T Consensus 354 l~~n~l-----~~~~~~~~~~~~~~~L~~L~l~-~n---~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 354 LSRNGL-----SFKGCCSQSDFGTTSLKYLDLS-FN---GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CCSSCC-----BEEEEEEHHHHTCSCCCEEECC-SC---SEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CcCCcc-----CccccccccccccCccCEEECC-CC---cccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 777532 2211 123677777776 55 2211 11112346777777776654322 124456677
Q ss_pred eEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee--Eee-e---cccccccc-cccccchhHHHHHHHhccCC
Q 041388 280 KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS--SVE-L---HRNGGRTD-RMASTANRAKKLTELGKSCP 352 (440)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~--~~~-~---f~~L~~L~-~~~~~~~~~~~l~~lL~~~p 352 (440)
+.+++....... .. ...+.++++++.|.++.+.+. .++ . +++|+.|+ ..+ ... ......+..+|
T Consensus 424 ~~L~l~~n~l~~---~~---~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~~l~ 494 (570)
T 2z63_A 424 IYLDISHTHTRV---AF---NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLE-QLSPTAFNSLS 494 (570)
T ss_dssp CEEECTTSCCEE---CC---TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCC-EECTTTTTTCT
T ss_pred CEEeCcCCcccc---cc---hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC--ccc-cCChhhhhccc
Confidence 766664432210 00 233456677777777666543 222 2 33444443 222 110 01122345567
Q ss_pred Cccccc-cccCCCCC-cc--ccccceeEEEEEe--eecCcchHHHH-HHHHh
Q 041388 353 AQEQFG-WLESDFDV-PH--CLVHTVKNIEIKG--VQGDEDERPLL-KYLLQ 397 (440)
Q Consensus 353 ~L~~L~-~~~~~~~~-~~--c~~~~L~~v~i~~--~~~~~~~~~~~-~~ll~ 397 (440)
+|+.|. ..+.-... +. ....+|+.+.+.+ +.+......++ .++-+
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence 777766 32211111 11 1235567776664 33444444555 44433
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.33 E-value=3.5e-07 Score=85.95 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=27.4
Q ss_pred ecCccccccccccEEEecC-Cccc-cCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 146 ELPEAIYSAACLKVLTLDS-DFSI-QVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 146 ~lp~~l~~~~~L~~L~L~~-~~~l-~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.+|..+..+++|++|+|.+ +... ..|.....+++|++|+|. ..+. ..+...+..++.|++|+|.++
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--GAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--EECCGGGGGCTTCCEEECCSS
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--CcCCHHHhCCCCCCEEeCCCC
Confidence 3444444455555555542 1111 112223344555555555 4433 112223344455555555444
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.32 E-value=1.4e-07 Score=94.30 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=106.4
Q ss_pred cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccc
Q 041388 154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATL 230 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L 230 (440)
+++|++|+|++ ..+...+ ....+++|++|+|. +.+.+... +..++.|+.|+|.+|.. ..+. ..++|
T Consensus 33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-----~~l~-~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV-----QELL-VGPSI 101 (487)
T ss_dssp GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEE-----EEEE-ECTTC
T ss_pred CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcC-----CCCC-CCCCc
Confidence 34677777773 3333322 34456777777777 55541111 55677777777776532 2222 23677
Q ss_pred ceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388 231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN 307 (440)
Q Consensus 231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 307 (440)
+.|.+. +| .+. .......|+|++|.++++.... ..+.++++|+.+++....... ..+ ..+...++
T Consensus 102 ~~L~L~-~N---~l~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~---~~l~~~l~ 169 (487)
T 3oja_A 102 ETLHAA-NN---NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNF---AELAASSD 169 (487)
T ss_dssp CEEECC-SS---CCC---CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEG---GGGGGGTT
T ss_pred CEEECc-CC---cCC---CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cCh---HHHhhhCC
Confidence 777776 55 221 1122234677777776654332 234556777766664332210 011 33445678
Q ss_pred cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCccc--cccceeEEEEE
Q 041388 308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPHC--LVHTVKNIEIK 380 (440)
Q Consensus 308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c--~~~~L~~v~i~ 380 (440)
+++.|.|+.+.+..+. .+++|+.|+ ..+ .. ..+..-+..+|+|+.|. ..+.=...|.. ...+|+.+.+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N--~l--~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KL--AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSS--CC--CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCC--CC--CCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 8888888887776655 355666665 333 11 11111245678888887 42211223322 23567777775
Q ss_pred e
Q 041388 381 G 381 (440)
Q Consensus 381 ~ 381 (440)
+
T Consensus 246 ~ 246 (487)
T 3oja_A 246 G 246 (487)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.30 E-value=7.6e-08 Score=101.95 Aligned_cols=230 Identities=14% Similarity=0.102 Sum_probs=111.0
Q ss_pred CcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCC-C-cccccccceEEEE-EEeCCCcchh--hhhccCC
Q 041388 131 EVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPS-S-GTCFPCVKILSVR-LENPNKSVTE--NLFCSCP 203 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~L~-~~~~~~~~l~--~lls~cp 203 (440)
+++.|++..+. -...+|. .+..+++|++|+|.++......+ . ...+++|++|+|. +.+. +.... ..+.+|+
T Consensus 101 ~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 101 SLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS-GANVVGWVLSDGCG 178 (768)
T ss_dssp TCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE-EETHHHHHHTTCCT
T ss_pred CCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC-CcCChhhhhhccCC
Confidence 56666654221 1123454 55667777777777332222222 1 1456677777777 5554 21111 1256677
Q ss_pred CcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCee
Q 041388 204 SLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLK 280 (440)
Q Consensus 204 ~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~ 280 (440)
.|++|++.+|...+. ... -..++|+.|.+. +| .+...... .-..++|++|.++++.... ..+.++++|+
T Consensus 179 ~L~~L~Ls~n~l~~~--~~~-~~l~~L~~L~Ls-~n---~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 179 ELKHLAISGNKISGD--VDV-SRCVNLEFLDVS-SN---NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TCCEEECCSSEEESC--CBC-TTCTTCCEEECC-SS---CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCEEECCCCccccc--CCc-ccCCcCCEEECc-CC---cCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 777777776643211 111 234667777776 55 22111111 1235677777776654331 1245566777
Q ss_pred EEEEEEeecccccCCchhhhhhhcccccccEEEEecccee-Eee-----ecccccccc-cccccchhHHHHHHHhccCCC
Q 041388 281 IVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS-SVE-----LHRNGGRTD-RMASTANRAKKLTELGKSCPA 353 (440)
Q Consensus 281 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~-~~~-----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~ 353 (440)
.+++....... ..+ ...+++++.|.++.+.+. .++ .+.+|++|+ ..+ ... ..+...+..+++
T Consensus 251 ~L~Ls~n~l~~--~~~------~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n--~l~-~~~p~~~~~l~~ 319 (768)
T 3rgz_A 251 LLNISSNQFVG--PIP------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN--HFY-GAVPPFFGSCSL 319 (768)
T ss_dssp EEECCSSCCEE--SCC------CCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS--EEE-ECCCGGGGGCTT
T ss_pred EEECCCCcccC--ccC------ccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC--cCC-CccchHHhcCCC
Confidence 66664443210 000 015667777777666554 222 135556555 322 110 012234556777
Q ss_pred ccccc-cccCC-CCCc---cccccceeEEEEEe
Q 041388 354 QEQFG-WLESD-FDVP---HCLVHTVKNIEIKG 381 (440)
Q Consensus 354 L~~L~-~~~~~-~~~~---~c~~~~L~~v~i~~ 381 (440)
|++|. ..+.- ...| -....+|+.+.+.+
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 77776 32211 1222 12245677777764
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.30 E-value=9e-07 Score=88.17 Aligned_cols=234 Identities=12% Similarity=0.026 Sum_probs=106.1
Q ss_pred CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
+++.|++... ....+|...+ .+++|++|+|.++.....+ .....+++|++|+|. ..+. ......+..++.|++
T Consensus 81 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 81 NLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--YISHRAFSGLNSLEQ 156 (477)
T ss_dssp TCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--EECTTSSTTCTTCCE
T ss_pred cCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc--eeChhhccCCCCCCE
Confidence 4555555322 1233444332 3566666666632222211 124455666666666 4333 111223445666666
Q ss_pred EEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEE
Q 041388 208 LSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVK 283 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~ 283 (440)
|.|.+|....+ ..-.+ ..++|+.|.+. ++ .+.......--..++|++|.++++...... .....+|+.++
T Consensus 157 L~l~~n~l~~~--~~~~l~~l~~L~~L~l~-~n---~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 157 LTLEKCNLTSI--PTEALSHLHGLIVLRLR-HL---NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp EEEESCCCSSC--CHHHHTTCTTCCEEEEE-SC---CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred EECCCCcCccc--ChhHhcccCCCcEEeCC-CC---cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 66666533221 10001 23566666666 44 111000000112456666666653321111 11223566655
Q ss_pred EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-
Q 041388 284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG- 358 (440)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~- 358 (440)
+...... ..+ ...+..+++++.|.|+.+.+..+. .|.++.+|+ .+.+.... ......+..+++|+.|.
T Consensus 231 l~~n~l~---~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 231 ITHCNLT---AVP---YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp EESSCCC---SCC---HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEEC
T ss_pred CcCCccc---ccC---HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEEC
Confidence 5443321 111 344567788888888877766655 344444444 22201111 01123455678888887
Q ss_pred cccCCCCCccc---cccceeEEEEEe
Q 041388 359 WLESDFDVPHC---LVHTVKNIEIKG 381 (440)
Q Consensus 359 ~~~~~~~~~~c---~~~~L~~v~i~~ 381 (440)
..+.=...+.. ...+|+.+.+.+
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred CCCcCceeCHhHcCCCcccCEEEccC
Confidence 32211122211 235688887764
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.29 E-value=3.4e-07 Score=90.37 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=41.1
Q ss_pred cccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc---cccccee
Q 041388 304 AGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH---CLVHTVK 375 (440)
Q Consensus 304 ~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~ 375 (440)
..+++++.|.|+.+.+..+. .|.++++|+ .+..+... ......+..+++|+.|. ..+.=...+. ....+|+
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 45566677777666555553 344433333 12100100 00112345567777776 3211111111 1235677
Q ss_pred EEEEEe--eecCcchHHHHHHHH
Q 041388 376 NIEIKG--VQGDEDERPLLKYLL 396 (440)
Q Consensus 376 ~v~i~~--~~~~~~~~~~~~~ll 396 (440)
.+.+.+ +........+..++-
T Consensus 283 ~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp EEECCSSCEECSSTTHHHHHHHH
T ss_pred EEEcCCCCccCCCCchHHHHHHH
Confidence 777763 344444344444443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.29 E-value=7.6e-08 Score=95.29 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcch-hhhhccCCCc
Q 041388 130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVT-ENLFCSCPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l-~~lls~cp~L 205 (440)
.+++.|++..+.- ...+| ..+..+++|++|+|+++..... +.....+++|++|+|. +.+. +... ...+..++.|
T Consensus 54 ~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 54 QDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSL 131 (455)
T ss_dssp TTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTC
T ss_pred ccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccC
Confidence 3688887754322 12343 3455689999999995433233 3346678999999999 8776 3222 2347789999
Q ss_pred ceEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388 206 EELSVTCELHDDTPPPNLIISSATLKTCKLIVRS 239 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~ 239 (440)
++|+|.++......+..+--..++|+.|.+. ++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n 164 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FN 164 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TC
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCC-CC
Confidence 9999999854332101111235789999887 65
No 31
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.29 E-value=2.4e-07 Score=85.73 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=26.8
Q ss_pred ccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 155 ACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+. ......+..++.|++|++.++
T Consensus 32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSC
T ss_pred CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCCC
Confidence 4566666662 22222 21 23445566666665 4443 111223445566666666654
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.28 E-value=3e-07 Score=94.51 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=94.6
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
+++.|++..+. ...+|. .+..+++|++|+|+++.....++ ....+++|++|+|. +.+. .....++..++.|+.
T Consensus 76 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 76 QVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCE
T ss_pred CCcEEECCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCE
Confidence 56666553221 223333 34446667777776332222222 23456667777776 5554 122234456667777
Q ss_pred EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE-EecCCceEEEEeccccccEEeeCCCCeeEEEEEE
Q 041388 208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT-ITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDI 286 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~-~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~ 286 (440)
|.|.++......+.. --..++|+.|.+. +| .+. .+. -..|+|+.|.++++.... +...++|+.+++..
T Consensus 152 L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~-~N---~l~----~~~~~~l~~L~~L~l~~n~l~~--l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 152 LSMSNNNLERIEDDT-FQATTSLQNLQLS-SN---RLT----HVDLSLIPSLFHANVSYNLLST--LAIPIAVEELDASH 220 (597)
T ss_dssp EECCSSCCCBCCTTT-TTTCTTCCEEECT-TS---CCS----BCCGGGCTTCSEEECCSSCCSE--EECCTTCSEEECCS
T ss_pred EEeeCCcCCCCChhh-hhcCCcCcEEECc-CC---CCC----CcChhhhhhhhhhhcccCcccc--ccCCchhheeeccC
Confidence 777665322110000 0123566666666 54 121 111 124566666666554332 23344555555433
Q ss_pred eecccccCCchhhhhhhcccccccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388 287 MHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..... . .....++++.|.++.+.+.... .+++|+.|+ ..+ ... ......+..+++|+.|.
T Consensus 221 n~l~~----~-----~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 221 NSINV----V-----RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN--ELE-KIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SCCCE----E-----ECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCC-EEESGGGTTCSSCCEEE
T ss_pred Ccccc----c-----ccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC--ccC-CCCHHHhcCccCCCEEE
Confidence 22210 0 0012357788888776555444 445555555 322 111 01123455678888887
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.27 E-value=1.8e-07 Score=88.11 Aligned_cols=225 Identities=10% Similarity=0.047 Sum_probs=106.4
Q ss_pred cccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccc
Q 041388 154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATL 230 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L 230 (440)
+++|++|+|. ...+...+ ....+++|++|+|. ..+.+.. . +..++.|++|++.++.. ..+. ..++|
T Consensus 33 ~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~l-----~~l~-~~~~L 101 (317)
T 3o53_A 33 AWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNYV-----QELL-VGPSI 101 (317)
T ss_dssp GGGCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSEE-----EEEE-ECTTC
T ss_pred CCCCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCcc-----cccc-CCCCc
Confidence 4455555555 22333222 23345556666655 4443111 1 44556666666655432 1111 22556
Q ss_pred ceeEEEeecccccccccccEEEEecCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccc
Q 041388 231 KTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGIN 307 (440)
Q Consensus 231 ~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~ 307 (440)
+.|.+. ++ .+. .......++|++|.++++.... ..+.++++|+.+++....... ..+ ..+...++
T Consensus 102 ~~L~l~-~n---~l~---~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~---~~~~~~l~ 169 (317)
T 3o53_A 102 ETLHAA-NN---NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNF---AELAASSD 169 (317)
T ss_dssp CEEECC-SS---CCS---EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EEG---GGGGGGTT
T ss_pred CEEECC-CC---ccC---CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--ccH---HHHhhccC
Confidence 666655 44 121 1112224566666665544322 123445566665553322210 001 33445678
Q ss_pred cccEEEEeccceeEee---ecccccccc-cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc--ccccceeEEEEE
Q 041388 308 SCKYLYLSAGIMSSVE---LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH--CLVHTVKNIEIK 380 (440)
Q Consensus 308 ~l~~L~l~~~~~~~~~---~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~--c~~~~L~~v~i~ 380 (440)
+++.|.++.+.+..+. .+.+|+.|+ ..+ ... .+..-+..+++|+.|. ..+.=...|. ....+|+.+.+.
T Consensus 170 ~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N--~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN--KLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSS--CCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred cCCEEECCCCcCcccccccccccCCEEECCCC--cCC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 8888888877776655 455666666 333 111 1111255678888887 4221112222 123567777775
Q ss_pred eeecCcchHHHHHHHHhhccccceEEEE
Q 041388 381 GVQGDEDERPLLKYLLQFAAAMEKMLMW 408 (440)
Q Consensus 381 ~~~~~~~~~~~~~~ll~~a~~L~~m~i~ 408 (440)
+-.-.. ......+...+.|+.+.+.
T Consensus 246 ~N~~~~---~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 246 GNGFHC---GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred CCCccC---cCHHHHHhccccceEEECC
Confidence 433221 1233344555666665554
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.26 E-value=1.1e-07 Score=97.94 Aligned_cols=138 Identities=13% Similarity=0.037 Sum_probs=77.9
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.+++.... ...+| .+..+++|++|++. .+.+...+.. .+++|++|++. .... . .+ -+..+|.|++|
T Consensus 285 ~~L~~L~l~~~~--~~~l~-~l~~~~~L~~L~l~-~n~l~~lp~~-~l~~L~~L~l~~n~~~-~-~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 285 ANVSAMSLAGVS--IKYLE-DVPKHFKWQSLSII-RCQLKQFPTL-DLPFLKSLTLTMNKGS-I-SF--KKVALPSLSYL 355 (606)
T ss_dssp TTCSEEEEESCC--CCCCC-CCCTTCCCSEEEEE-SCCCSSCCCC-CCSSCCEEEEESCSSC-E-EC--CCCCCTTCCEE
T ss_pred CCCCEEEecCcc--chhhh-hccccccCCEEEcc-cccCcccccC-CCCccceeeccCCcCc-c-ch--hhccCCCCCEE
Confidence 478888886533 23455 56668888999988 4444555534 78888888888 6433 1 11 24467888888
Q ss_pred EEeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCCC
Q 041388 209 SVTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLHS 278 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~~ 278 (440)
++.++.. ..+. ...++|+.|.+. +| .+.. ........++|++|.++++..... .+.++++
T Consensus 356 ~ls~n~l-----~~~~~~~~~~~~~~~L~~L~L~-~n---~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 356 DLSRNAL-----SFSGCCSYSDLGTNSLRHLDLS-FN---GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp ECCSSCE-----EEEEECCHHHHCCSCCCEEECC-SC---SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ECcCCcc-----CCCcchhhhhccCCcccEeECC-CC---cccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 8877532 1111 123677777776 55 1210 000011246677777765432211 2345566
Q ss_pred eeEEEEEE
Q 041388 279 LKIVKLDI 286 (440)
Q Consensus 279 L~~~~i~~ 286 (440)
|+.+++..
T Consensus 426 L~~L~l~~ 433 (606)
T 3vq2_A 426 LLYLDISY 433 (606)
T ss_dssp CCEEECTT
T ss_pred CCEEECcC
Confidence 66666543
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.25 E-value=1.5e-06 Score=89.37 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=86.5
Q ss_pred ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-ccc
Q 041388 151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSA 228 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~ 228 (440)
+..+++|+.|++. +..+...+....+++|++|++. +.+. . +..+ .+|.|+.|.+.++.. . ..+.+ ..+
T Consensus 281 ~~~l~~L~~L~l~-~~~~~~l~~l~~~~~L~~L~l~~n~l~-~--lp~~--~l~~L~~L~l~~n~~--~--~~~~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLA-GVSIKYLEDVPKHFKWQSLSIIRCQLK-Q--FPTL--DLPFLKSLTLTMNKG--S--ISFKKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEE-SCCCCCCCCCCTTCCCSEEEEESCCCS-S--CCCC--CCSSCCEEEEESCSS--C--EECCCCCCT
T ss_pred cccCCCCCEEEec-CccchhhhhccccccCCEEEcccccCc-c--cccC--CCCccceeeccCCcC--c--cchhhccCC
Confidence 4457788888888 4445444445667788888888 7764 2 2233 788888888888732 2 22211 347
Q ss_pred ccceeEEEeecccccccccccEEE------EecCCceEEEEeccccccE--EeeCCCCeeEEEEEEeecccccCCchhhh
Q 041388 229 TLKTCKLIVRSEDMLFREVDYMLT------ITAPKLESLEIYSDLLGSF--VMHDLHSLKIVKLDIMHAEWAQVDPYRAI 300 (440)
Q Consensus 229 ~L~~L~i~~~~~~~~~~~~~~~l~------~~~p~L~~L~~~~~~~~~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~~~ 300 (440)
+|+.|.+. +| .+ ..+. ...++|++|.++++..... .+.++++|+.+++........ .+ .
T Consensus 351 ~L~~L~ls-~n---~l----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---~ 417 (606)
T 3vq2_A 351 SLSYLDLS-RN---AL----SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV--TE---F 417 (606)
T ss_dssp TCCEEECC-SS---CE----EEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST--TT---T
T ss_pred CCCEEECc-CC---cc----CCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc--cC---h
Confidence 88888887 65 22 1111 1358888888887654332 345678888887754432210 00 1
Q ss_pred hhhcccccccEEEEeccceeE
Q 041388 301 QLLAGINSCKYLYLSAGIMSS 321 (440)
Q Consensus 301 ~~l~~~~~l~~L~l~~~~~~~ 321 (440)
..+..+++++.|.++.+.+..
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEE
T ss_pred hhhhccccCCEEECcCCCCCc
Confidence 233455556666665544433
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.24 E-value=4.9e-08 Score=100.47 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=30.7
Q ss_pred ccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 153 SAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.+++|++|+|.+ ..+.. |.....+++|++|++. ..+. ......+..+|.|+.|.+.++
T Consensus 276 ~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 276 CFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFE--NLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp TCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCS--BGGGGCGGGCTTCSEEECCSC
T ss_pred cccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcC--cCchhhhhccCcCCEEECCCC
Confidence 366666666663 23333 2234455666666666 5554 112233455666666666655
No 37
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.24 E-value=5e-08 Score=94.60 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=20.2
Q ss_pred cccccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeee
Q 041388 176 CFPCVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 176 ~~~~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c 213 (440)
.+++|++|+|. +.+. +. .+...+..|+.|+.|.|.+|
T Consensus 92 ~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFG-PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TCTTCCEEECCSCCCC-TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred hCCcccEEECCCCcCC-HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 44566666666 5555 22 23334455666666666665
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.24 E-value=8.7e-07 Score=83.04 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=91.7
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.|++..+. ...++. +..+++|++|+|+ ...+...+....+++|++|+|. +.+. + +.. +..++.|+.|
T Consensus 63 ~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~-~n~l~~~~~~~~l~~L~~L~l~~n~l~-~--~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 63 NNLIGLELKDNQ--ITDLAP-LKNLTKITELELS-GNPLKNVSAIAGLQSIKTLDLTSTQIT-D--VTP-LAGLSNLQVL 134 (308)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCCSCCEEECC-SCCCSCCGGGTTCTTCCEEECTTSCCC-C--CGG-GTTCTTCCEE
T ss_pred CCCCEEEccCCc--CCCChh-HccCCCCCEEEcc-CCcCCCchhhcCCCCCCEEECCCCCCC-C--chh-hcCCCCCCEE
Confidence 367777764322 233444 5557777777777 4445444445567777777777 6665 2 122 5677777877
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM 287 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~ 287 (440)
.+.++..... .. --..++|+.|.+. +| .+.. ... .-..++|+.|.++++..... .+..+++|+.+++...
T Consensus 135 ~l~~n~l~~~--~~-l~~l~~L~~L~l~-~n---~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 135 YLDLNQITNI--SP-LAGLTNLQYLSIG-NA---QVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp ECCSSCCCCC--GG-GGGCTTCCEEECC-SS---CCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred ECCCCccCcC--cc-ccCCCCccEEEcc-CC---cCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC
Confidence 7777644322 11 1123677777777 65 2211 111 12356777777776543322 1455666666666443
Q ss_pred ecccccCCchhhhhhhcccccccEEEEecccee
Q 041388 288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS 320 (440)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~ 320 (440)
.... ...+..+++++.|.++.+.+.
T Consensus 206 ~l~~--------~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 206 QISD--------VSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCB--------CGGGTTCTTCCEEEEEEEEEE
T ss_pred ccCc--------cccccCCCCCCEEEccCCeee
Confidence 3211 112456667777777665443
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.24 E-value=4.6e-07 Score=89.85 Aligned_cols=191 Identities=8% Similarity=0.019 Sum_probs=127.5
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
..++.|++.... ...+| .+..+++|++|+|+ ...+...+ ...+++|++|+|. ..+. .-. +..++.|++|
T Consensus 42 ~~L~~L~Ls~n~--l~~~~-~l~~l~~L~~L~Ls-~n~l~~~~-~~~l~~L~~L~Ls~N~l~-~~~----~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSS--ITDMT-GIEKLTGLTKLICT-SNNITTLD-LSQNTNLTYLACDSNKLT-NLD----VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSC--CCCCT-TGGGCTTCSEEECC-SSCCSCCC-CTTCTTCSEEECCSSCCS-CCC----CTTCTTCCEE
T ss_pred CCCCEEEccCCC--cccCh-hhcccCCCCEEEcc-CCcCCeEc-cccCCCCCEEECcCCCCc-eee----cCCCCcCCEE
Confidence 478888885432 22345 56778999999999 55566555 6778999999999 8877 322 6788999999
Q ss_pred EEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEE-ecCCceEEEEecc-ccccEEeeCCCCeeEEEEE
Q 041388 209 SVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKLESLEIYSD-LLGSFVMHDLHSLKIVKLD 285 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L~~L~~~~~-~~~~~~~~~~~~L~~~~i~ 285 (440)
++.++.... +.+ ..++|+.|.+. ++ .+. .+.+ ..++|++|.++++ ....+.+..+++|+.+++.
T Consensus 112 ~L~~N~l~~-----l~~~~l~~L~~L~l~-~N---~l~----~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 112 NCDTNKLTK-----LDVSQNPLLTYLNCA-RN---TLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp ECCSSCCSC-----CCCTTCTTCCEEECT-TS---CCS----CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred ECCCCcCCe-----ecCCCCCcCCEEECC-CC---ccc----eeccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 999875422 223 34789999888 66 332 1222 3678999998876 3344556778889888876
Q ss_pred EeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388 286 IMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
...... .. +..+++++.|.++.+.+..+. .+++|+.|+ ... ... .+. +..+|+|+.|.
T Consensus 179 ~n~l~~--------l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N--~l~--~ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 179 FNKITE--------LD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN--KLT--EID--VTPLTQLTYFD 239 (457)
T ss_dssp SSCCCC--------CC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSS--CCS--CCC--CTTCTTCSEEE
T ss_pred CCccce--------ec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCC--ccc--ccC--ccccCCCCEEE
Confidence 544321 11 467788999999877665543 455666666 333 111 122 66788999888
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.23 E-value=6.9e-07 Score=88.60 Aligned_cols=237 Identities=11% Similarity=0.046 Sum_probs=151.5
Q ss_pred CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK 181 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~ 181 (440)
+.++.+.+....-.... .+ ..-.+++.|++..+. ...+| +..+++|++|+|+ ...+...+ ...+++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~----~l--~~l~~L~~L~Ls~n~--l~~~~--~~~l~~L~~L~Ls-~N~l~~~~-~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT----GI--EKLTGLTKLICTSNN--ITTLD--LSQNTNLTYLACD-SNKLTNLD-VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCCT----TG--GGCTTCSEEECCSSC--CSCCC--CTTCTTCSEEECC-SSCCSCCC-CTTCTTCC
T ss_pred CCCCEEEccCCCcccCh----hh--cccCCCCEEEccCCc--CCeEc--cccCCCCCEEECc-CCCCceee-cCCCCcCC
Confidence 35777777654322211 11 223589999886432 22234 5679999999999 55566555 77899999
Q ss_pred eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEE-ecCCc
Q 041388 182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTI-TAPKL 258 (440)
Q Consensus 182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~-~~p~L 258 (440)
+|+|. ..+. .- . +..++.|++|.+.++.. ..+.+ ..++|+.|.+. .|. . ...+.+ ..++|
T Consensus 110 ~L~L~~N~l~-~l--~--~~~l~~L~~L~l~~N~l-----~~l~l~~l~~L~~L~l~-~n~---~---~~~~~~~~l~~L 172 (457)
T 3bz5_A 110 YLNCDTNKLT-KL--D--VSQNPLLTYLNCARNTL-----TEIDVSHNTQLTELDCH-LNK---K---ITKLDVTPQTQL 172 (457)
T ss_dssp EEECCSSCCS-CC--C--CTTCTTCCEEECTTSCC-----SCCCCTTCTTCCEEECT-TCS---C---CCCCCCTTCTTC
T ss_pred EEECCCCcCC-ee--c--CCCCCcCCEEECCCCcc-----ceeccccCCcCCEEECC-CCC---c---ccccccccCCcC
Confidence 99999 8877 32 2 67899999999999754 22233 34789999998 661 1 111122 36899
Q ss_pred eEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc-ccc
Q 041388 259 ESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD-RMA 335 (440)
Q Consensus 259 ~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~-~~~ 335 (440)
++|.++++....+.+.++++|+.+.+....... . -+..+++++.|.++.+.+..++ .+++|+.|+ ...
T Consensus 173 ~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~--------~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITK--------L-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCCCCCTTCTTCCEEECCSSCCSC--------C-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred CEEECCCCccceeccccCCCCCEEECcCCcCCe--------e-ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCC
Confidence 999999887666668889999998886554321 1 1467899999999888776655 455666665 332
Q ss_pred ccchhHHHHHHHhccCCCccccc-cc----------cCC-CCCccccccceeEEEEEee
Q 041388 336 STANRAKKLTELGKSCPAQEQFG-WL----------ESD-FDVPHCLVHTVKNIEIKGV 382 (440)
Q Consensus 336 ~~~~~~~~l~~lL~~~p~L~~L~-~~----------~~~-~~~~~c~~~~L~~v~i~~~ 382 (440)
... .+ -+..+++|+.|. .. +.. ...|.....+|+.+.+.+.
T Consensus 244 --~l~--~~--~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 244 --PLT--EL--DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp --CCS--CC--CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred --cCC--Cc--CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence 111 11 145678887665 21 111 1122223467888877643
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.23 E-value=2.6e-07 Score=91.56 Aligned_cols=92 Identities=9% Similarity=-0.010 Sum_probs=42.2
Q ss_pred cccccccEEEEeccceeEee--ecccccccc--cccccchhHHHHHHHhccCCCccccc-cccCCCCCcc---cccccee
Q 041388 304 AGINSCKYLYLSAGIMSSVE--LHRNGGRTD--RMASTANRAKKLTELGKSCPAQEQFG-WLESDFDVPH---CLVHTVK 375 (440)
Q Consensus 304 ~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~--~~~~~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~---c~~~~L~ 375 (440)
..+++++.|.|+.+.+..+. .|.++++|+ .+..+... ......+..+++|+.|. ..+.=...+. ....+|+
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 45566777777666555543 344443333 12100110 00112345677777776 3221111221 1246678
Q ss_pred EEEEEe--eecCcchHHHHHHHH
Q 041388 376 NIEIKG--VQGDEDERPLLKYLL 396 (440)
Q Consensus 376 ~v~i~~--~~~~~~~~~~~~~ll 396 (440)
.+.+.+ +.+...-..+..++-
T Consensus 294 ~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp EEECCSSCEECSTTTHHHHHHHH
T ss_pred EEEccCCCcCCCCCchHHHHHHH
Confidence 887764 344444444444443
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.22 E-value=2.9e-07 Score=91.14 Aligned_cols=181 Identities=20% Similarity=0.134 Sum_probs=101.3
Q ss_pred CcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
+++.|++.... ...++ ..+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+. ..-...+..+|.|+
T Consensus 100 ~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 100 HLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLM 174 (452)
T ss_dssp TCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTCC
T ss_pred CCCEEECCCCc--cCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCccc
Confidence 66666664321 12233 33444777777777743 3333 22 24457777777777 6554 12233456777888
Q ss_pred eEEEeeeeCCCCCCCcEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCCe
Q 041388 207 ELSVTCELHDDTPPPNLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHSL 279 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L 279 (440)
.|+|.+|.. + ..+.. ..++|+.|.+. +| .+.. ... ....++|++|.++++..... .+.++++|
T Consensus 175 ~L~l~~~~~--l--~~i~~~~~~~l~~L~~L~L~-~n---~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 175 RLDLGELKK--L--EYISEGAFEGLFNLKYLNLG-MC---NIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp EEECCCCTT--C--CEECTTTTTTCTTCCEEECT-TS---CCSS-CCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred EEeCCCCCC--c--cccChhhccCCCCCCEEECC-CC---cccc-ccc-ccccccccEEECcCCcCcccCcccccCccCC
Confidence 887777532 2 22211 23677778777 65 2311 111 12357888888877654433 34567788
Q ss_pred eEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee-----ecccccccc
Q 041388 280 KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-----LHRNGGRTD 332 (440)
Q Consensus 280 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-----~f~~L~~L~ 332 (440)
+.+++....... .. ...+.++++++.|.|+.+.+..+. .+++|+.|+
T Consensus 245 ~~L~L~~n~l~~--~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 245 KKLWVMNSQVSL--IE----RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp CEEECTTSCCCE--EC----TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred CEEEeCCCcCce--EC----HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 877764433211 00 233567888999999888776655 344555555
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.21 E-value=1.5e-08 Score=100.55 Aligned_cols=298 Identities=11% Similarity=0.020 Sum_probs=161.0
Q ss_pred ceeeEEEEeeCCCChhhHHHHHHHHHc--CCcEEEEEEEccC---ceeecCccccccccccEEEecCCccccCCC--C--
Q 041388 103 KIGKFSLYCSRPTNLARFYDWIATALM--REVGEIQLYLGQQ---SRVELPEAIYSAACLKVLTLDSDFSIQVPS--S-- 173 (440)
Q Consensus 103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~-- 173 (440)
.++.+.++...- ....+..+...... .++++|++..+.- +...+|..+..+++|++|+|++ ..+.... .
T Consensus 57 ~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~ 134 (461)
T 1z7x_W 57 ALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLC 134 (461)
T ss_dssp TCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHH
T ss_pred CcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHH
Confidence 588877764221 12223333322221 1588888854321 1124566677789999999994 4443211 0
Q ss_pred ---cccccccceEEEE-EEeCCCc---chhhhhccCCCcceEEEeeeeCCCCCCCcEE--e--cccccceeEEEeecccc
Q 041388 174 ---GTCFPCVKILSVR-LENPNKS---VTENLFCSCPSLEELSVTCELHDDTPPPNLI--I--SSATLKTCKLIVRSEDM 242 (440)
Q Consensus 174 ---~~~~~~L~~L~L~-~~~~~~~---~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~--i--~~~~L~~L~i~~~~~~~ 242 (440)
....++|++|+|. +.+. +. .+...+..||.|++|++.++.........+. + ..++|+.|.+. +|
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-~n--- 209 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE-SC--- 209 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCB-GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT-TS---
T ss_pred HHHhcCCCcceEEECCCCCCC-HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc-CC---
Confidence 1124579999999 8877 43 3456677899999999988742111000010 0 13488999888 76
Q ss_pred cccccc----cEEEEecCCceEEEEeccccccE--------EeeCCCCeeEEEEEEeecccccCCchhh-hhhhcccccc
Q 041388 243 LFREVD----YMLTITAPKLESLEIYSDLLGSF--------VMHDLHSLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSC 309 (440)
Q Consensus 243 ~~~~~~----~~l~~~~p~L~~L~~~~~~~~~~--------~~~~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l 309 (440)
.+.... ....-..++|++|.++++..... ....+++|+.+++..+.... ..... ...+..++++
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA---KGCGDLCRVLRAKESL 286 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH---HHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH---HHHHHHHHHHhhCCCc
Confidence 232100 00011458899999887643221 11246788887775543210 00001 3445567888
Q ss_pred cEEEEeccceeEee----------ecccccccc-cccc-cchhHHHHHHHhccCCCccccc-cccCC-CC----Ccccc-
Q 041388 310 KYLYLSAGIMSSVE----------LHRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG-WLESD-FD----VPHCL- 370 (440)
Q Consensus 310 ~~L~l~~~~~~~~~----------~f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~-~~~~~-~~----~~~c~- 370 (440)
+.|.++.+.+.... ..++|++|. ..+. .......+...+..+++|++|. ..+.- .. ..+.+
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 88888776553221 124677776 4331 1223445677777888888887 32210 00 01111
Q ss_pred --ccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEee
Q 041388 371 --VHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAK 410 (440)
Q Consensus 371 --~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~ 410 (440)
..+|+.+.+.+..-....+..+...+.+.+.|+.+.+...
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 2467777776554333333344444566777777777654
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.21 E-value=1.5e-07 Score=88.45 Aligned_cols=201 Identities=10% Similarity=0.029 Sum_probs=110.1
Q ss_pred ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCcccc-C-CCCccccccc
Q 041388 103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQ-V-PSSGTCFPCV 180 (440)
Q Consensus 103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~-~-~~~~~~~~~L 180 (440)
.|+.+.+....-.....+...+. .-..++.|++..+......+|..+..+++|++|+|. ...+. . +.....+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc-CCeeCCcCCHHHhCCCCC
Confidence 57777776543221001111111 124788888863222234677777788999999998 44443 3 3345678889
Q ss_pred ceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCce
Q 041388 181 KILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLE 259 (440)
Q Consensus 181 ~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~ 259 (440)
++|+|. ..+. ..+...+..++.|++|.+.++...+..+..+.--.++|+.|.+. ++ .+.. ...-.+...+|+
T Consensus 128 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N---~l~~-~~~~~~~~l~L~ 200 (313)
T 1ogq_A 128 VTLDFSYNALS--GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RN---RLTG-KIPPTFANLNLA 200 (313)
T ss_dssp CEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SS---EEEE-ECCGGGGGCCCS
T ss_pred CEEeCCCCccC--CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CC---eeec-cCChHHhCCccc
Confidence 999998 7765 23445567789999999888643110001111111378888887 55 2210 000011122388
Q ss_pred EEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee
Q 041388 260 SLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS 320 (440)
Q Consensus 260 ~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~ 320 (440)
+|.++++.... ..+.++++|+.+++...... .. ...+..+++++.|.++.+.+.
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~~---~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FD---LGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC----CB---GGGCCCCTTCCEEECCSSCCE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCcee----ee---cCcccccCCCCEEECcCCccc
Confidence 88887654321 12456677777666443321 11 112455677777777766655
No 45
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.19 E-value=4.4e-07 Score=83.40 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
.+++|.+.... ...+ ..+..+++|++|+|. +..+...+....+++|++|+|. ..+. ......+..++.|++|.
T Consensus 42 ~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~-~n~l~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 42 SIDQIIANNSD--IKSV-QGIQYLPNVRYLALG-GNKLHDISALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TCCEEECTTSC--CCCC-TTGGGCTTCCEEECT-TSCCCCCGGGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEE
T ss_pred ceeeeeeCCCC--cccc-cccccCCCCcEEECC-CCCCCCchhhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEE
Confidence 56666553221 1122 235557777777777 3444444445566777777777 6554 22233455677777777
Q ss_pred EeeeeCCCCCCCcEEe-cccccceeEEEeec
Q 041388 210 VTCELHDDTPPPNLII-SSATLKTCKLIVRS 239 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~ 239 (440)
+.+|..... ..-.+ ..++|+.|.+. +|
T Consensus 116 L~~n~l~~~--~~~~~~~l~~L~~L~L~-~n 143 (272)
T 3rfs_A 116 LVENQLQSL--PDGVFDKLTNLTYLNLA-HN 143 (272)
T ss_dssp CTTSCCCCC--CTTTTTTCTTCCEEECC-SS
T ss_pred CCCCcCCcc--CHHHhccCCCCCEEECC-CC
Confidence 777643222 10001 23566666666 55
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.16 E-value=3.9e-07 Score=91.16 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=96.5
Q ss_pred ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-ccc
Q 041388 151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSA 228 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~ 228 (440)
+..+++|++|+|+ +..+...+ ..++|++|+|. +.+. ... ...+|.|+.|.|.++...+. ....+ ..+
T Consensus 76 l~~l~~L~~L~Ls-~N~l~~l~---~~~~L~~L~L~~N~l~-~~~----~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~ 144 (487)
T 3oja_A 76 LESLSTLRTLDLN-NNYVQELL---VGPSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNKITML--RDLDEGCRS 144 (487)
T ss_dssp CTTCTTCCEEECC-SSEEEEEE---ECTTCCEEECCSSCCC-CEE----ECCCSSCEEEECCSSCCCSG--GGBCGGGGS
T ss_pred cccCCCCCEEEec-CCcCCCCC---CCCCcCEEECcCCcCC-CCC----ccccCCCCEEECCCCCCCCC--CchhhcCCC
Confidence 3345556666655 22332221 12556666655 5444 211 12356677777766543222 11122 235
Q ss_pred ccceeEEEeeccccccccc-ccEEEEecCCceEEEEeccccccEE-eeCCCCeeEEEEEEeecccccCCchhhhhhhccc
Q 041388 229 TLKTCKLIVRSEDMLFREV-DYMLTITAPKLESLEIYSDLLGSFV-MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGI 306 (440)
Q Consensus 229 ~L~~L~i~~~~~~~~~~~~-~~~l~~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~ 306 (440)
+|+.|.+. ++ .+... ...+.-..++|++|.++++...... ...+++|+.+++....... . ..-+..+
T Consensus 145 ~L~~L~Ls-~N---~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----~---~~~~~~l 213 (487)
T 3oja_A 145 RVQYLDLK-LN---EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----M---GPEFQSA 213 (487)
T ss_dssp SEEEEECT-TS---CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----E---CGGGGGG
T ss_pred CCCEEECC-CC---CCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCC----C---CHhHcCC
Confidence 67777776 54 22100 0000013477888888776544332 3346777777775543321 1 1125677
Q ss_pred ccccEEEEeccceeEee-ec---ccccccccccccchhHHHHHHHhccCCCccccc
Q 041388 307 NSCKYLYLSAGIMSSVE-LH---RNGGRTDRMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 307 ~~l~~L~l~~~~~~~~~-~f---~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
++++.|.++.+.+..++ .+ ++|+.|. +.++...-..+..++..+|.|+.|.
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~-l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFD-LRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEE-CTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred CCccEEEecCCcCcccchhhccCCCCCEEE-cCCCCCcCcchHHHHHhCCCCcEEe
Confidence 89999999888777666 34 4455444 2211333346677788888888877
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.15 E-value=1.5e-06 Score=80.38 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=25.9
Q ss_pred ccccccEEEecCCccccC--CCCcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeee
Q 041388 153 SAACLKVLTLDSDFSIQV--PSSGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.+++|++|+|.++ .+.. +.....+++|++|+|. .. +. ......+..++.|++|.+.++
T Consensus 54 ~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 54 ACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR--SVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC--CCCTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc--ccCHHHhcCCcCCCEEECCCC
Confidence 3555555555522 2211 1123345555555555 43 22 111223445555555555554
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=82.03 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388 144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP 220 (440)
Q Consensus 144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~ 220 (440)
...+|..++ ++|++|+|.+ ..+.. ++ ....+++|++|+|. ..+. ......+..++.|++|+|.++....+
T Consensus 43 l~~iP~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~-- 115 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNL-- 115 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSC--
T ss_pred ccccccccc--ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcC--
Confidence 345565443 4788888884 33333 22 35667888888888 6655 12233466778888888887643222
Q ss_pred CcEEe-cccccceeEEEeeccccccccccc-EEEEecCCceEEEEeccc-cccE---EeeCCCCeeEEEEEE
Q 041388 221 PNLII-SSATLKTCKLIVRSEDMLFREVDY-MLTITAPKLESLEIYSDL-LGSF---VMHDLHSLKIVKLDI 286 (440)
Q Consensus 221 ~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~-~l~~~~p~L~~L~~~~~~-~~~~---~~~~~~~L~~~~i~~ 286 (440)
..-.+ ..++|+.|.+. ++ .+..... ...-..++|++|.++++. .... .+.++++|+.+++..
T Consensus 116 ~~~~~~~l~~L~~L~L~-~n---~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLL-GN---PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp CHHHHTTCTTCSEEECT-TC---CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CHhHhCCCccCCEEECC-CC---CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 11111 23677777776 55 2211000 111235677777776642 2221 133455555555544
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.14 E-value=6.3e-07 Score=88.42 Aligned_cols=199 Identities=17% Similarity=0.093 Sum_probs=117.4
Q ss_pred CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
.+++.|++..+. ...++. .+..+++|++|+|.+ ..+...+ ....+++|++|+|. ..+. ..-...+..++.|
T Consensus 88 ~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSL 162 (440)
T ss_dssp SSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSCCCC--EECTTTTTTCTTC
T ss_pred CCCCEEECCCCc--CCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCCccc--ccCHHHhhhCccc
Confidence 367777775332 233443 344588888888884 3444433 35567888888888 6665 2223456678889
Q ss_pred ceEEEeeeeCCCCCCCcEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCC
Q 041388 206 EELSVTCELHDDTPPPNLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHS 278 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~ 278 (440)
+.|+|.+|.. + ..+.. ..++|+.|.+. +| .+.. ... ....++|++|.++++..... .+.++++
T Consensus 163 ~~L~l~~~~~--l--~~i~~~~~~~l~~L~~L~L~-~n---~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 163 RRLDLGELKR--L--SYISEGAFEGLSNLRYLNLA-MC---NLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp CEEECCCCTT--C--CEECTTTTTTCSSCCEEECT-TS---CCSS-CCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEeCCCCCCC--c--ceeCcchhhcccccCeecCC-CC---cCcc-ccc-cCCCcccCEEECCCCccCccChhhhccCcc
Confidence 9998887632 2 22211 24678888887 66 2321 111 12357888999887754433 3456788
Q ss_pred eeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ec---ccccccc-c---ccccchhHHHHHHHhc
Q 041388 279 LKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LH---RNGGRTD-R---MASTANRAKKLTELGK 349 (440)
Q Consensus 279 L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f---~~L~~L~-~---~~~~~~~~~~l~~lL~ 349 (440)
|+.+++....... . . ...+..+++++.|.|+.+.+..+. .| .+|+.|+ . +. ......++...++
T Consensus 233 L~~L~L~~n~l~~--~-~---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~-CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 233 LQKLWMIQSQIQV--I-E---RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN-CNCDILWLSWWIK 305 (440)
T ss_dssp CCEEECTTCCCCE--E-C---TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE-CSSTTHHHHHHHH
T ss_pred CCEEECCCCceeE--E-C---hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc-CCCCchHHHHHHH
Confidence 8887775433211 0 0 234567889999999888777665 34 4555554 2 21 2344555655555
Q ss_pred c
Q 041388 350 S 350 (440)
Q Consensus 350 ~ 350 (440)
.
T Consensus 306 ~ 306 (440)
T 3zyj_A 306 D 306 (440)
T ss_dssp T
T ss_pred h
Confidence 4
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.14 E-value=1e-06 Score=76.73 Aligned_cols=78 Identities=15% Similarity=0.053 Sum_probs=40.3
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
++++|++.... ...+| .+..+++|++|++.++ .+..++....+++|++|+|. ..+. +.. ...++.+|.|+.|.
T Consensus 45 ~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~-~~~-~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 45 SLTYITLANIN--VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVT-SDK-IPNLSGLTSLTLLD 118 (197)
T ss_dssp TCCEEEEESSC--CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCB-GGG-SCCCTTCTTCCEEE
T ss_pred CccEEeccCCC--ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccC-ccc-ChhhcCCCCCCEEE
Confidence 56666664322 12344 3455666666666633 44444434556666666666 5544 211 12244566666666
Q ss_pred Eeeee
Q 041388 210 VTCEL 214 (440)
Q Consensus 210 L~~c~ 214 (440)
+.+|.
T Consensus 119 Ls~n~ 123 (197)
T 4ezg_A 119 ISHSA 123 (197)
T ss_dssp CCSSB
T ss_pred ecCCc
Confidence 66653
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.13 E-value=1.1e-06 Score=80.62 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=65.6
Q ss_pred ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccc
Q 041388 155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK 231 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~ 231 (440)
++|++|+|. ...+...+ ....+++|++|+|. ..+. ..-..++..++.|++|.|.++....+. ...--..++|+
T Consensus 37 ~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQ-SNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECC-SSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCC
T ss_pred CCCCEEECc-CCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCC
Confidence 455666665 22332222 23445566666665 4443 111233445566666666554321110 00001224555
Q ss_pred eeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhccccc
Q 041388 232 TCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINS 308 (440)
Q Consensus 232 ~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 308 (440)
.|.+. ++ .+.......--..++|++|.++++....+. +.++++|+.+++....... .+ ...+..+++
T Consensus 113 ~L~l~-~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~---~~~~~~l~~ 182 (270)
T 2o6q_A 113 ELRLD-RN---QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR---VP---EGAFDKLTE 182 (270)
T ss_dssp EEECC-SS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CC---TTTTTTCTT
T ss_pred EEECC-CC---ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE---eC---hhHhccCCC
Confidence 56555 43 111000000012355666666554332221 2345555555553322210 00 122345666
Q ss_pred ccEEEEeccceeEee
Q 041388 309 CKYLYLSAGIMSSVE 323 (440)
Q Consensus 309 l~~L~l~~~~~~~~~ 323 (440)
++.|.++.+.+..+.
T Consensus 183 L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVP 197 (270)
T ss_dssp CCEEECCSSCCSCCC
T ss_pred cCEEECCCCcCCcCC
Confidence 777776665554443
No 52
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.13 E-value=5.1e-07 Score=82.96 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=72.1
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT 232 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~ 232 (440)
.++|+.|.+. +..+...+....+++|+.|+|. ..+. + + ..+..++.|++|.+.+|...... ...--..++|+.
T Consensus 40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~~L~l~~n~l~-~--~-~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIAN-NSDIKSVQGIQYLPNVRYLALGGNKLH-D--I-SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECT-TSCCCCCTTGGGCTTCCEEECTTSCCC-C--C-GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred ccceeeeeeC-CCCcccccccccCCCCcEEECCCCCCC-C--c-hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCE
Confidence 4566666666 4444444435556666666666 5554 2 1 13455666666666665332210 000012355666
Q ss_pred eEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhcccccc
Q 041388 233 CKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSC 309 (440)
Q Consensus 233 L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l 309 (440)
|.+. +| .+.......--..++|++|.++++...... +.++++|+.+++....... .+ ...+..++++
T Consensus 114 L~L~-~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~---~~~~~~l~~L 183 (272)
T 3rfs_A 114 LVLV-EN---QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS---LP---EGVFDKLTQL 183 (272)
T ss_dssp EECT-TS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CC---TTTTTTCTTC
T ss_pred EECC-CC---cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc---cC---HHHhcCCccC
Confidence 6665 44 121000000012456666666655433222 3445666666554433210 01 2234556666
Q ss_pred cEEEEeccceeEee
Q 041388 310 KYLYLSAGIMSSVE 323 (440)
Q Consensus 310 ~~L~l~~~~~~~~~ 323 (440)
+.|.++.+.+..+.
T Consensus 184 ~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 184 KDLRLYQNQLKSVP 197 (272)
T ss_dssp CEEECCSSCCSCCC
T ss_pred CEEECCCCcCCccC
Confidence 66666665554443
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.13 E-value=3.1e-07 Score=86.46 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=111.2
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++..+. ....+. +..+++|++|+|+ ...+...+ ..++|++|++. ..+. ... ...++.|++|.
T Consensus 59 ~L~~L~Ls~n~--l~~~~~-~~~l~~L~~L~Ls-~n~l~~l~---~~~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~ 126 (317)
T 3o53_A 59 KLELLNLSSNV--LYETLD-LESLSTLRTLDLN-NNYVQELL---VGPSIETLHAANNNIS-RVS----CSRGQGKKNIY 126 (317)
T ss_dssp TCCEEECTTSC--CEEEEE-ETTCTTCCEEECC-SSEEEEEE---ECTTCCEEECCSSCCS-EEE----ECCCSSCEEEE
T ss_pred cCCEEECCCCc--CCcchh-hhhcCCCCEEECc-CCcccccc---CCCCcCEEECCCCccC-CcC----ccccCCCCEEE
Confidence 56666663221 111222 4456677777776 33333221 23667777776 5554 211 12367777777
Q ss_pred EeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEE-----EecCCceEEEEeccccccEE-eeCCCCeeEE
Q 041388 210 VTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLT-----ITAPKLESLEIYSDLLGSFV-MHDLHSLKIV 282 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~-----~~~p~L~~L~~~~~~~~~~~-~~~~~~L~~~ 282 (440)
+.++..... ....+ ..++|+.|.+. ++ .+ ..+. -..++|++|.++++...... ...+++|+.+
T Consensus 127 l~~N~l~~~--~~~~~~~l~~L~~L~Ls-~N---~l----~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L 196 (317)
T 3o53_A 127 LANNKITML--RDLDEGCRSRVQYLDLK-LN---EI----DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196 (317)
T ss_dssp CCSSCCCSG--GGBCTGGGSSEEEEECT-TS---CC----CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE
T ss_pred CCCCCCCCc--cchhhhccCCCCEEECC-CC---CC----CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEE
Confidence 777643222 11122 23677777777 55 22 1111 13478888888876654432 2347788887
Q ss_pred EEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee-ec---ccccccc-cccccchhHHHHHHHhccCCCcccc
Q 041388 283 KLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-LH---RNGGRTD-RMASTANRAKKLTELGKSCPAQEQF 357 (440)
Q Consensus 283 ~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~f---~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L 357 (440)
++....... . ...+..+++++.|.++.+.+..++ .+ ++|+.|+ ... ...-..+..++..+|+|+.|
T Consensus 197 ~Ls~N~l~~----l---~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N--~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 197 DLSSNKLAF----M---GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN--GFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ECCSSCCCE----E---CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC--CCBHHHHHHHHHTCHHHHHH
T ss_pred ECCCCcCCc----c---hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC--CccCcCHHHHHhccccceEE
Confidence 775543321 1 112567889999999988877766 34 4555554 332 33334677788889999988
Q ss_pred c
Q 041388 358 G 358 (440)
Q Consensus 358 ~ 358 (440)
.
T Consensus 268 ~ 268 (317)
T 3o53_A 268 A 268 (317)
T ss_dssp H
T ss_pred E
Confidence 8
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.10 E-value=4.6e-07 Score=84.71 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=78.6
Q ss_pred CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEec
Q 041388 148 PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIIS 226 (440)
Q Consensus 148 p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~ 226 (440)
|..++.+++|++|+|+++.....++....+++|++|+|. ..+. .......+..++.|+.|.+.++...... ...--.
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~ 148 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNG 148 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTT
T ss_pred ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccc-hhhccc
Confidence 334444566666666632222222223455666666666 5544 2211233455666666666654221110 000001
Q ss_pred ccccceeEEEeeccccccccc-ccEEEEecCCceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCchhhhhh
Q 041388 227 SATLKTCKLIVRSEDMLFREV-DYMLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQL 302 (440)
Q Consensus 227 ~~~L~~L~i~~~~~~~~~~~~-~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~ 302 (440)
.++|+.|.+. ++ .+... .....-..++|++|.++++..... .+.++++|+.+++....... .. ...
T Consensus 149 l~~L~~L~l~-~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~---~~~ 218 (306)
T 2z66_A 149 LSSLEVLKMA-GN---SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---LD---TFP 218 (306)
T ss_dssp CTTCCEEECT-TC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB---CC---SGG
T ss_pred CcCCCEEECC-CC---ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc---cC---hhh
Confidence 2556666665 44 12100 000011245666666665543322 23445666666554332210 00 122
Q ss_pred hcccccccEEEEeccceeEee-----ec-ccccccc
Q 041388 303 LAGINSCKYLYLSAGIMSSVE-----LH-RNGGRTD 332 (440)
Q Consensus 303 l~~~~~l~~L~l~~~~~~~~~-----~f-~~L~~L~ 332 (440)
+..+++++.|.++.+.+.... .+ .+|+.|+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 456778888888776555432 33 3566665
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.10 E-value=8.3e-06 Score=87.23 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=49.7
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC--CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV--PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~--~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
+++.|++..+. -....|..+..+++|++|+|. ...+.. +. ....+++|++|+|. ..+. .......++.++.|
T Consensus 74 ~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSL 150 (844)
T ss_dssp TCCEEECTTCC-CCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-CCCCCGGGGTCSSC
T ss_pred CCCEEECCCCc-CcccCHhHccCCcccCEeeCc-CCCCCcccccCccccccCCCCEEECCCCccc-ccccchhHhhCCCC
Confidence 56666664221 122345566667888888888 334432 22 14567788888888 7766 33344556778888
Q ss_pred ceEEEeeee
Q 041388 206 EELSVTCEL 214 (440)
Q Consensus 206 e~L~L~~c~ 214 (440)
++|.|.++.
T Consensus 151 ~~L~Ls~N~ 159 (844)
T 3j0a_A 151 KSIDFSSNQ 159 (844)
T ss_dssp CEEEEESSC
T ss_pred CEEECCCCc
Confidence 888887763
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.09 E-value=2.5e-06 Score=87.60 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=31.8
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++..+. ...+|. .+++|++|+|+ +..+...+. .+++|++|+|. +.+. . + -...+.|+.|.
T Consensus 62 ~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls-~N~l~~lp~--~l~~L~~L~Ls~N~l~-~--l---~~~l~~L~~L~ 127 (622)
T 3g06_A 62 HITTLVIPDNN--LTSLPA---LPPELRTLEVS-GNQLTSLPV--LPPGLLELSIFSNPLT-H--L---PALPSGLCKLW 127 (622)
T ss_dssp TCSEEEECSCC--CSCCCC---CCTTCCEEEEC-SCCCSCCCC--CCTTCCEEEECSCCCC-C--C---CCCCTTCCEEE
T ss_pred CCcEEEecCCC--CCCCCC---cCCCCCEEEcC-CCcCCcCCC--CCCCCCEEECcCCcCC-C--C---CCCCCCcCEEE
Confidence 55555554321 123333 24556666666 333333331 45566666666 5443 1 1 11345555555
Q ss_pred Eeee
Q 041388 210 VTCE 213 (440)
Q Consensus 210 L~~c 213 (440)
+.++
T Consensus 128 L~~N 131 (622)
T 3g06_A 128 IFGN 131 (622)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.08 E-value=1.2e-06 Score=90.05 Aligned_cols=169 Identities=20% Similarity=0.219 Sum_probs=97.4
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
++++|++..+ ....+|..+..+++|++|+|.+ ..+.. ++ ....+++|++|++. ..+. ...-...+..++.|++
T Consensus 279 ~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 279 GLQELDLTAT--HLSELPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRE 354 (606)
T ss_dssp TCSEEECTTS--CCSCCCSSCCSCTTCCEEECTT-CCCSBGGGGCGGGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCE
T ss_pred CCCEEeccCC--ccCCCChhhcccccCCEEECcc-CCcCcCchhhhhccCcCCEEECCCCCcc-cccchhhhhccCcCCE
Confidence 4555555322 2347888888899999999994 44433 22 46678999999999 7655 2222344678899999
Q ss_pred EEEeeeeCCCCCCCcEE-----e-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCC
Q 041388 208 LSVTCELHDDTPPPNLI-----I-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLH 277 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~-----i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~ 277 (440)
|++.++.. ..+. + ..++|+.|.+. +| .+........-..++|++|.++++..... .+.+++
T Consensus 355 L~l~~n~l-----~~~~~~~~~~~~l~~L~~L~l~-~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 355 LDLSHDDI-----ETSDCCNLQLRNLSHLQSLNLS-YN---EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp EECCSSCC-----CEEEESTTTTTTCTTCCEEECC-SC---SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred EECCCCcc-----ccccCcchhcccCCCCCEEECC-CC---cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 99988643 2222 1 24788888887 66 22100000001257788888776543221 245667
Q ss_pred CeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccc
Q 041388 278 SLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGI 318 (440)
Q Consensus 278 ~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~ 318 (440)
+|+.+++....... .. ...+..+++++.|.++.+.
T Consensus 426 ~L~~L~l~~n~l~~---~~---~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 426 LLKVLNLSHSLLDI---SS---EQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TCCEEECTTCCCBT---TC---TTTTTTCTTCCEEECTTCB
T ss_pred cCCEEECCCCccCC---cC---HHHHhCCCCCCEEECCCCC
Confidence 77777765443211 00 1233455566666665543
No 58
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.06 E-value=8.3e-07 Score=93.99 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=126.2
Q ss_pred CCcEEEEEEEccCceeecCccc-cccccccEEEecCCccccC-CC-C---cccccccceEEEE-EEeCCCcchhhhhccC
Q 041388 130 REVGEIQLYLGQQSRVELPEAI-YSAACLKVLTLDSDFSIQV-PS-S---GTCFPCVKILSVR-LENPNKSVTENLFCSC 202 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~l~~-~~-~---~~~~~~L~~L~L~-~~~~~~~~l~~lls~c 202 (440)
.++++|++..+. -....|..+ ..+++|++|+|++ ..+.. .+ . ...+++|++|+|. ..+.+...+ ..|
T Consensus 126 ~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l 199 (768)
T 3rgz_A 126 SGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSA-NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRC 199 (768)
T ss_dssp TTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCS-SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTC
T ss_pred CCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCC-CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccC
Confidence 478888885432 123445544 5689999999994 44433 22 1 3568899999999 877633332 689
Q ss_pred CCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccc-cEEeeCCCCeeE
Q 041388 203 PSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLG-SFVMHDLHSLKI 281 (440)
Q Consensus 203 p~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~-~~~~~~~~~L~~ 281 (440)
+.|++|+|.+|...... .. --..++|+.|.+. +| .+........-..++|++|.++++... .....++++|+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~-~~-l~~l~~L~~L~Ls-~n---~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGI-PF-LGDCSALQHLDIS-GN---KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp TTCCEEECCSSCCCSCC-CB-CTTCCSCCEEECC-SS---CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred CcCCEEECcCCcCCCCC-cc-cccCCCCCEEECc-CC---cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence 99999999998543321 11 1134889999998 76 231100111124689999999876532 222337888998
Q ss_pred EEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecc---cccccc-cccccchhHHHHHHHhccCCCcc
Q 041388 282 VKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHR---NGGRTD-RMASTANRAKKLTELGKSCPAQE 355 (440)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~---~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~ 355 (440)
+++....... ..+ ..+...+++++.|.++.+.+.... .|. +|+.|+ ..+ ......-...+..+++|+
T Consensus 274 L~L~~n~l~~--~ip---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 274 LSLAENKFTG--EIP---DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN--NFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp EECCSSEEEE--SCC---CCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS--EEEEECCHHHHTTCTTCC
T ss_pred EECcCCccCC--ccC---HHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC--cccCcCCHHHHhcCCCCC
Confidence 8886544321 111 222334589999999888766432 344 445444 222 111111123466789999
Q ss_pred ccc
Q 041388 356 QFG 358 (440)
Q Consensus 356 ~L~ 358 (440)
.|.
T Consensus 347 ~L~ 349 (768)
T 3rgz_A 347 VLD 349 (768)
T ss_dssp EEE
T ss_pred EEe
Confidence 988
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.04 E-value=1.4e-05 Score=80.44 Aligned_cols=102 Identities=16% Similarity=0.064 Sum_probs=51.1
Q ss_pred CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
..+++|++..+. ...++ ..+..+++|++|+|+++..... +.....+++|++|+|+ ..+. . +... .++.|+
T Consensus 21 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~--lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K--ISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-E--EECC--CCCCCS
T ss_pred ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-e--cCcc--ccCCcc
Confidence 356666664322 22333 2344567777777773322222 1234556777777777 5554 1 2111 567777
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRS 239 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~ 239 (440)
+|+|.++....+.....--..++|+.|.+. ++
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~-~n 125 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLS-TT 125 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEE-ES
T ss_pred EEeccCCccccccchhhhccCCcceEEEec-Cc
Confidence 777777643221000001123567777776 55
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=9.6e-07 Score=94.00 Aligned_cols=257 Identities=8% Similarity=0.013 Sum_probs=138.5
Q ss_pred CcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCC-cc
Q 041388 131 EVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPS-LE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~-Le 206 (440)
+++.|++..+. ...+|. .+..+++|+.|+|++ ..+...|....+++|+.|+|. ..+. .+..-+..++. |+
T Consensus 549 ~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 549 KIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVH-NKVRHLEAFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVE 622 (876)
T ss_dssp TCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTT-SCCCBCCCCCTTSEESEEECCSSCCS---CCCTTSCEECTTCC
T ss_pred CccEEEeeCCc--CCccCChhhhhcCCCCCEEECCC-CCcccchhhcCCCcceEEECcCCccc---cchHHHhhccccCC
Confidence 67777775433 227777 777788888888884 333343346678888888888 7665 23344667788 88
Q ss_pred eEEEeeeeCCCCCCCcEE-ecccccceeEEEeecccccccccccEE-----EEecCCceEEEEeccccccEE---eeCCC
Q 041388 207 ELSVTCELHDDTPPPNLI-ISSATLKTCKLIVRSEDMLFREVDYML-----TITAPKLESLEIYSDLLGSFV---MHDLH 277 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~-i~~~~L~~L~i~~~~~~~~~~~~~~~l-----~~~~p~L~~L~~~~~~~~~~~---~~~~~ 277 (440)
.|.|.++....++ ..+. ...++|+.|.+. +| .+......+ ....++|+.|.++++....+. +.+++
T Consensus 623 ~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls-~N---~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 623 GLGFSHNKLKYIP-NIFNAKSVYVMGSVDFS-YN---KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp EEECCSSCCCSCC-SCCCTTCSSCEEEEECC-SS---CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred EEECcCCCCCcCc-hhhhccccCCCCEEECc-CC---cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 8888887543331 1111 112458888887 66 221100111 113457888888776554332 23677
Q ss_pred CeeEEEEEEeecccccCCchhh-hhhhcccccccEEEEeccceeEee-ec-----ccccccc-cccccchhHHHHHHHhc
Q 041388 278 SLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE-LH-----RNGGRTD-RMASTANRAKKLTELGK 349 (440)
Q Consensus 278 ~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~-~f-----~~L~~L~-~~~~~~~~~~~l~~lL~ 349 (440)
+|+.+++.......-....+.. ...+..+++++.|.|+.+.+..++ .+ ++|+.|+ ..+ . ...+..-+.
T Consensus 698 ~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~--L~~lp~~l~ 773 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN--C--FSSFPTQPL 773 (876)
T ss_dssp CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS--C--CSSCCCGGG
T ss_pred CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC--C--CCccchhhh
Confidence 8888777554332000000000 111234557888888777666554 22 3444444 222 1 112333455
Q ss_pred cCCCccccc-cccC----C---CCCccc--cccceeEEEEEeeec--CcchHHHHHHHHhhccccceEEEEeec
Q 041388 350 SCPAQEQFG-WLES----D---FDVPHC--LVHTVKNIEIKGVQG--DEDERPLLKYLLQFAAAMEKMLMWAKA 411 (440)
Q Consensus 350 ~~p~L~~L~-~~~~----~---~~~~~c--~~~~L~~v~i~~~~~--~~~~~~~~~~ll~~a~~L~~m~i~~~~ 411 (440)
.+++|+.|. ..+. . ...|.. ...+|+.+.+.+..- .+..+ .+.|+.+.+...+
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l---------~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---------TPQLYILDIADNP 838 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC---------CSSSCEEECCSCT
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh---------cCCCCEEECCCCC
Confidence 677888776 3211 1 122322 245677777764331 11111 1477777776654
No 61
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=1.9e-06 Score=82.42 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=52.9
Q ss_pred cccccceEEEE-EEeC-------CCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccc-
Q 041388 176 CFPCVKILSVR-LENP-------NKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFRE- 246 (440)
Q Consensus 176 ~~~~L~~L~L~-~~~~-------~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~- 246 (440)
.|++|+.|.+. +... +..++..++..+|.|++|.|.++.+..+ .. +..++|++|.+. .| ++..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~--~~~~~L~~L~L~-~~---~l~~~ 208 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GK--KPRPNLKSLEII-SG---GLPDS 208 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CS--CBCTTCSEEEEE-CS---BCCHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--cc--ccCCCCcEEEEe-cC---CCChH
Confidence 56777777766 4321 1235778899999999999998743222 22 457899999998 66 2311
Q ss_pred cccEEE-EecCCceEEEEe
Q 041388 247 VDYMLT-ITAPKLESLEIY 264 (440)
Q Consensus 247 ~~~~l~-~~~p~L~~L~~~ 264 (440)
....+. ...|+|++|.++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHccCCCCcEEEEe
Confidence 011121 257999999985
No 62
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.02 E-value=2e-06 Score=78.73 Aligned_cols=36 Identities=28% Similarity=0.709 Sum_probs=34.0
Q ss_pred ccCCCCChHHHHHHhcCCCchhhh-hhhccccchHHH
Q 041388 25 DRISSLPDSVLCHILSYIPTKHVV-ATSVIAKRWKNV 60 (440)
Q Consensus 25 D~is~LPd~lL~~Ils~L~~~d~~-rts~lsrrWr~l 60 (440)
..+..||||||..||++||.++++ +++.|||+||.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.99 E-value=4.2e-06 Score=79.04 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred CcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
+++.|++..+. ...+ |..+..+++|++|+|. ...+...+ ...+++|++|++. ..+. ......+..++.|+.|
T Consensus 77 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls-~n~l~~l~-~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 77 NLHTLILINNK--ISKISPGAFAPLVKLERLYLS-KNQLKELP-EKMPKTLQELRVHENEIT--KVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCCEEECCSSC--CCCBCTTTTTTCTTCCEEECC-SSCCSBCC-SSCCTTCCEEECCSSCCC--BBCHHHHTTCTTCCEE
T ss_pred CCCEEECCCCc--CCeeCHHHhcCCCCCCEEECC-CCcCCccC-hhhcccccEEECCCCccc--ccCHhHhcCCccccEE
Confidence 67777664321 1223 4555567778888887 33444433 2234678888777 6655 2234456677888888
Q ss_pred EEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccccEEEEecCCceEEEEeccc
Q 041388 209 SVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDL 267 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~ 267 (440)
.+.++.........-.+ ..++|+.|.+. ++ .+......+ .++|++|.++++.
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n---~l~~l~~~~---~~~L~~L~l~~n~ 203 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIA-DT---NITTIPQGL---PPSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECC-SS---CCCSCCSSC---CTTCSEEECTTSC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECC-CC---ccccCCccc---cccCCEEECCCCc
Confidence 88776331100000011 23677777776 55 221100111 2677777776654
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.99 E-value=2.4e-05 Score=83.60 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred ccccccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cc
Q 041388 151 IYSAACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SS 227 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~ 227 (440)
+..+++|+.|+|.++.....+ ....++++|++|+|. ..+. ......+..+|.|+.|++.++....+ ..-.+ ..
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l 361 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG--ELYSSNFYGLPKVAYIDLQKNHIAII--QDQTFKFL 361 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS--CCCSCSCSSCTTCCEEECCSCCCCCC--CSSCSCSC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC--ccCHHHhcCCCCCCEEECCCCCCCcc--ChhhhcCC
Confidence 334666777776632222222 234456667777776 5554 11223345566666666666533222 11011 23
Q ss_pred cccceeEEEeec
Q 041388 228 ATLKTCKLIVRS 239 (440)
Q Consensus 228 ~~L~~L~i~~~~ 239 (440)
++|+.|.+. ++
T Consensus 362 ~~L~~L~Ls-~N 372 (844)
T 3j0a_A 362 EKLQTLDLR-DN 372 (844)
T ss_dssp CCCCEEEEE-TC
T ss_pred CCCCEEECC-CC
Confidence 566666666 54
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.99 E-value=9.7e-06 Score=82.10 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=123.0
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.++.|++.... -....|..+..+++|++|+|+++.....++ ....+++|++|+|. ..+. + .....+..++.|++|
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~-~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-S-LSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-S-CCHHHHTTCTTCCEE
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-c-cCHHHhccCCCCcEE
Confidence 67777765332 112234455668899999998443222232 35678889999998 7776 2 234456788999999
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEE----EecCCceEEEEeccccccE---EeeCCCCeeE
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLT----ITAPKLESLEIYSDLLGSF---VMHDLHSLKI 281 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~ 281 (440)
++.++..........--..++|+.|.+. +|. + ...+. -..++|++|.++++..... .+.++++|+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~-~n~---~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIG-NVE---T---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESS---S---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred ECCCCcccccchhhhhhccCCccEEECC-CCc---c---ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9988753221001111134788899888 662 1 11111 1257888888887654332 2445677777
Q ss_pred EEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--------ecccccccc-ccc-ccchhHHHHHHHhccC
Q 041388 282 VKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--------LHRNGGRTD-RMA-STANRAKKLTELGKSC 351 (440)
Q Consensus 282 ~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--------~f~~L~~L~-~~~-~~~~~~~~l~~lL~~~ 351 (440)
+++...... ... ..+...+++++.|.++.+.+.... .+.+|+.|+ ... -.......+...+..+
T Consensus 177 L~l~~n~~~----~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 177 LTLHLSESA----FLL--EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp EEEECSBST----THH--HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred EecccCccc----ccc--hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 777554321 110 233456788999998876554321 355666666 322 0122334555666777
Q ss_pred CCccccc
Q 041388 352 PAQEQFG 358 (440)
Q Consensus 352 p~L~~L~ 358 (440)
++|+.|.
T Consensus 251 ~~L~~l~ 257 (549)
T 2z81_A 251 LELSEVE 257 (549)
T ss_dssp TTCCEEE
T ss_pred ccccccc
Confidence 7777776
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.97 E-value=2.8e-06 Score=80.25 Aligned_cols=196 Identities=14% Similarity=0.128 Sum_probs=119.6
Q ss_pred CceeeEEEEeeCCCC--hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Ccccc
Q 041388 102 AKIGKFSLYCSRPTN--LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCF 177 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~--~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~ 177 (440)
+.++.+.+....-.. ...+ . .-.+++.|++.... ...+|..++ ++|++|++. ...+...+ ....+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~Ls~n~--l~~l~~~~~--~~L~~L~l~-~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAF----A--PLVKLERLYLSKNQ--LKELPEKMP--KTLQELRVH-ENEITKVRKSVFNGL 144 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTT----T--TCTTCCEEECCSSC--CSBCCSSCC--TTCCEEECC-SSCCCBBCHHHHTTC
T ss_pred CCCCEEECCCCcCCeeCHHHh----c--CCCCCCEEECCCCc--CCccChhhc--ccccEEECC-CCcccccCHhHhcCC
Confidence 457887776543222 1111 1 12378888885432 335666555 799999999 44444333 24578
Q ss_pred cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecC
Q 041388 178 PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAP 256 (440)
Q Consensus 178 ~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p 256 (440)
++|+.|+|. ..+.........+..++.|+.|.+.++....++ .. ..++|+.|.+. ++ .+.......--..+
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~---~~~~L~~L~l~-~n---~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QG---LPPSLTELHLD-GN---KITKVDAASLKGLN 216 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SS---CCTTCSEEECT-TS---CCCEECTGGGTTCT
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-cc---ccccCCEEECC-CC---cCCccCHHHhcCCC
Confidence 999999999 777522334456788999999999997543331 11 12789999998 66 22100000011358
Q ss_pred CceEEEEeccccccE---EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388 257 KLESLEIYSDLLGSF---VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE 323 (440)
Q Consensus 257 ~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~ 323 (440)
+|++|.++++..... .+.++++|+.+++...... .. ...+..+++++.|.++.+.+..+.
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l---p~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV----KV---PGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS----SC---CTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc----cC---ChhhccCCCcCEEECCCCcCCccC
Confidence 899999988754433 2456778888777654332 11 123466778888888877665544
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.97 E-value=1e-06 Score=91.13 Aligned_cols=217 Identities=11% Similarity=0.034 Sum_probs=117.4
Q ss_pred CCcEEEEEEEccCceeecCc--cccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCC-c
Q 041388 130 REVGEIQLYLGQQSRVELPE--AIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPS-L 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~-L 205 (440)
.++++|++..+. ...+|. .+..+++|++|+|.++......|....+++|++|.|. ..+. .+..-+..++. |
T Consensus 305 ~~L~~L~L~~n~--l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNN--LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT---EIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSC--CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE---ECCTTSEEECTTC
T ss_pred CCCCEEECCCCc--CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc---cccHhhhhhcccC
Confidence 478888875433 227787 7777888999999844333133346677888988888 6655 23334677888 9
Q ss_pred ceEEEeeeeCCCCCCCcEEe-cccccceeEEEeeccccccccc-ccEE------EEecCCceEEEEeccccccEE---ee
Q 041388 206 EELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREV-DYML------TITAPKLESLEIYSDLLGSFV---MH 274 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~-~~~l------~~~~p~L~~L~~~~~~~~~~~---~~ 274 (440)
+.|.+.++....++ ..+.. ..++|+.|.+. +| .+... ...+ ....++|++|.++++....+. +.
T Consensus 380 ~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls-~N---~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 380 ENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFS-YN---EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CEEECCSSCCSSCC-SCCCTTCSSCEEEEECC-SS---CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred cEEEccCCcCcccc-hhhhhcccCccCEEECc-CC---cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 99999887543331 11111 12368888887 66 22110 0111 113567888888776544332 23
Q ss_pred CCCCeeEEEEEEeecccccCCchhh-hhhhcccccccEEEEeccceeEee-ecc--cccccc--cccccchhHHHHHHHh
Q 041388 275 DLHSLKIVKLDIMHAEWAQVDPYRA-IQLLAGINSCKYLYLSAGIMSSVE-LHR--NGGRTD--RMASTANRAKKLTELG 348 (440)
Q Consensus 275 ~~~~L~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~l~~~~~~~~~-~f~--~L~~L~--~~~~~~~~~~~l~~lL 348 (440)
.+++|+.+++.......-....+.. ...++.+++++.|.++.+.+..++ .+. ++++|+ .+. ......+..-+
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls--~N~l~~ip~~~ 532 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS--YNSFSKFPTQP 532 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECC--SSCCSSCCCGG
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECC--CCCCCCcChhh
Confidence 4677877777554332100000000 011223347778887777666554 222 333333 222 11111233344
Q ss_pred ccCCCccccc
Q 041388 349 KSCPAQEQFG 358 (440)
Q Consensus 349 ~~~p~L~~L~ 358 (440)
..+++|+.|.
T Consensus 533 ~~l~~L~~L~ 542 (636)
T 4eco_A 533 LNSSTLKGFG 542 (636)
T ss_dssp GGCSSCCEEE
T ss_pred hcCCCCCEEE
Confidence 5677777776
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.96 E-value=1.9e-06 Score=79.97 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=94.1
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
.++.|++..+. ...+| .+..+++|++|+|. ...+...+....+++|+.|+|. ..+. + +.. +..++.|+.|+
T Consensus 47 ~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~-~n~l~~~~~l~~l~~L~~L~l~~n~l~-~--~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 47 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLN-GNKLTDIKPLANLKNLGWLFLDENKVK-D--LSS-LKDLKKLKSLS 118 (291)
T ss_dssp TCCEEECTTSC--CCCCT-TGGGCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCC-C--GGG-GTTCTTCCEEE
T ss_pred cccEEEccCCC--cccCh-hHhcCCCCCEEEcc-CCccCCCcccccCCCCCEEECCCCcCC-C--Chh-hccCCCCCEEE
Confidence 67777664322 22333 35568888888888 4444443336678888888888 7766 2 222 67788888888
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH 288 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~ 288 (440)
+.+|....+ ..+ -..++|+.|.+. +| .+.. . ...-..++|+.|.++++..... .+..+++|+.+++....
T Consensus 119 L~~n~i~~~--~~l-~~l~~L~~L~l~-~n---~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 119 LEHNGISDI--NGL-VHLPQLESLYLG-NN---KITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CTTSCCCCC--GGG-GGCTTCCEEECC-SS---CCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCcCCCC--hhh-cCCCCCCEEEcc-CC---cCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence 888743222 111 124678888887 66 2211 1 0011357788888776543321 24556666666664433
Q ss_pred cccccCCchhhhhhhcccccccEEEEeccce
Q 041388 289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIM 319 (440)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 319 (440)
... ...+..+++++.|.++.+.+
T Consensus 190 i~~--------l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISD--------LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCB--------CGGGTTCTTCSEEEEEEEEE
T ss_pred CCC--------ChhhccCCCCCEEECcCCcc
Confidence 211 12245666677777665543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.95 E-value=9.8e-06 Score=83.18 Aligned_cols=241 Identities=13% Similarity=0.031 Sum_probs=131.8
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++... ....+|..++ ++|++|+|. +..+...+. .+++|++|+|+ +.+. . +.. ..+.|++|+
T Consensus 41 ~l~~L~ls~n--~L~~lp~~l~--~~L~~L~L~-~N~l~~lp~--~l~~L~~L~Ls~N~l~-~--lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGES--GLTTLPDCLP--AHITTLVIP-DNNLTSLPA--LPPELRTLEVSGNQLT-S--LPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSS--CCSCCCSCCC--TTCSEEEEC-SCCCSCCCC--CCTTCCEEEECSCCCS-C--CCC---CCTTCCEEE
T ss_pred CCcEEEecCC--CcCccChhhC--CCCcEEEec-CCCCCCCCC--cCCCCCEEEcCCCcCC-c--CCC---CCCCCCEEE
Confidence 6777777532 2346777665 799999999 555655552 67899999999 8776 2 222 679999999
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeec
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHA 289 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~ 289 (440)
|.++....+ . ...++|+.|.+. +| .+. .+....|+|++|.++++....+. ...++|+.+++.....
T Consensus 108 Ls~N~l~~l--~---~~l~~L~~L~L~-~N---~l~----~lp~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 108 IFSNPLTHL--P---ALPSGLCKLWIF-GN---QLT----SLPVLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQL 173 (622)
T ss_dssp ECSCCCCCC--C---CCCTTCCEEECC-SS---CCS----CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC
T ss_pred CcCCcCCCC--C---CCCCCcCEEECC-CC---CCC----cCCCCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCC
Confidence 999754333 2 245778888887 66 231 12223478888888776543321 2334555554433222
Q ss_pred ccccCCc--------hhh--hhhhcccccccEEEEeccceeEee-ecccccccc-cccccchhHHHHHHHhccCCCcccc
Q 041388 290 EWAQVDP--------YRA--IQLLAGINSCKYLYLSAGIMSSVE-LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQF 357 (440)
Q Consensus 290 ~~~~~~~--------~~~--~~~l~~~~~l~~L~l~~~~~~~~~-~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L 357 (440)
..-.... ..| ..+...+++++.|.++.+.+..++ .+++|+.|. ..+ ... .+. ..+++|+.|
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~L~--~lp---~~l~~L~~L 246 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--RLT--SLP---VLPSELKEL 246 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--CCS--CCC---CCCTTCCEE
T ss_pred CCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC--ccC--cCC---CCCCcCcEE
Confidence 1000000 000 111123345555555544444333 334555555 322 111 111 455777777
Q ss_pred c-cccCCCCCccccccceeEEEEEeeecCcchHHHHHHHHhhccccceEEEEeec
Q 041388 358 G-WLESDFDVPHCLVHTVKNIEIKGVQGDEDERPLLKYLLQFAAAMEKMLMWAKA 411 (440)
Q Consensus 358 ~-~~~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~~ 411 (440)
. ..+.-...|. ...+|+.+.+.+..-. .+ ..-+.+.++|+.+.+....
T Consensus 247 ~Ls~N~L~~lp~-~~~~L~~L~Ls~N~L~--~l---p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 247 MVSGNRLTSLPM-LPSGLLSLSVYRNQLT--RL---PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSSCCSCCCC-CCTTCCEEECCSSCCC--SC---CGGGGGSCTTCEEECCSCC
T ss_pred ECCCCCCCcCCc-ccccCcEEeCCCCCCC--cC---CHHHhhccccCEEEecCCC
Confidence 6 3221123344 4577888888643311 11 1124577889999886644
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.95 E-value=1.3e-06 Score=80.34 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=16.2
Q ss_pred ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 175 TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 175 ~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
..+++|++|+|. ..+. ......+..++.|++|+|.++
T Consensus 49 ~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTC
T ss_pred ccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCC
Confidence 344555555555 4333 111122344555555555543
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.94 E-value=1.1e-06 Score=81.60 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=6.4
Q ss_pred cCCCcceEEEeee
Q 041388 201 SCPSLEELSVTCE 213 (440)
Q Consensus 201 ~cp~Le~L~L~~c 213 (440)
.++.|+.|+|.++
T Consensus 75 ~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 75 TLPVLGTLDLSHN 87 (290)
T ss_dssp CCTTCCEEECCSS
T ss_pred CCCcCCEEECCCC
Confidence 4455555555443
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.94 E-value=2.8e-07 Score=89.32 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=8.8
Q ss_pred hcccccccEEEEeccce
Q 041388 303 LAGINSCKYLYLSAGIM 319 (440)
Q Consensus 303 l~~~~~l~~L~l~~~~~ 319 (440)
+..+++++.|.|+.+.+
T Consensus 212 l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTF 228 (386)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred hhcCCCccEEECcCCCC
Confidence 34555555555554443
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.94 E-value=3.4e-06 Score=73.32 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=24.4
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+++|++|++. +..+...+....+++|++|++. +.+. + + ..++.+|.|++|.+.++
T Consensus 43 l~~L~~L~l~-~n~i~~l~~l~~l~~L~~L~l~~n~~~-~--~-~~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 43 MNSLTYITLA-NINVTDLTGIEYAHNIKDLTINNIHAT-N--Y-NPISGLSNLERLRIMGK 98 (197)
T ss_dssp HHTCCEEEEE-SSCCSCCTTGGGCTTCSEEEEESCCCS-C--C-GGGTTCTTCCEEEEECT
T ss_pred cCCccEEecc-CCCccChHHHhcCCCCCEEEccCCCCC-c--c-hhhhcCCCCCEEEeECC
Confidence 4455555555 3333332224445555555555 4332 1 1 12344555555555554
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=1.7e-06 Score=92.11 Aligned_cols=262 Identities=14% Similarity=0.070 Sum_probs=152.3
Q ss_pred CceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccc-c
Q 041388 102 AKIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPC-V 180 (440)
Q Consensus 102 ~~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-L 180 (440)
+.++.+.+....-.. +..|-......+++.|++..+. ...+| .+..+++|+.|+|+++.....|.....+++ |
T Consensus 548 ~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~--l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L 621 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNK--VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621 (876)
T ss_dssp TTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSC--CCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred CCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCC--cccch-hhcCCCcceEEECcCCccccchHHHhhccccC
Confidence 457777776543221 2121011122478888885432 23777 667799999999995433333445667888 9
Q ss_pred ceEEEE-EEeCCCcchhhhhccC--CCcceEEEeeeeCCCCCCCcE-----EecccccceeEEEeecccccccccccEEE
Q 041388 181 KILSVR-LENPNKSVTENLFCSC--PSLEELSVTCELHDDTPPPNL-----IISSATLKTCKLIVRSEDMLFREVDYMLT 252 (440)
Q Consensus 181 ~~L~L~-~~~~~~~~l~~lls~c--p~Le~L~L~~c~~~~~~~~~l-----~i~~~~L~~L~i~~~~~~~~~~~~~~~l~ 252 (440)
+.|+|. ..+. . +...+... +.|+.|.|.++...+.. ..+ ....++|+.|.+. +| .+......+.
T Consensus 622 ~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls-~N---~L~~lp~~~~ 693 (876)
T 4ecn_A 622 EGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLS-YN---EIQKFPTELF 693 (876)
T ss_dssp CEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECC-SS---CCCSCCHHHH
T ss_pred CEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEcc-CC---cCCccCHHHH
Confidence 999999 7765 2 33444444 45999999998542210 111 1133589999998 76 2321011111
Q ss_pred EecCCceEEEEeccccccEEe----------eCCCCeeEEEEEEeecccccCCchhhhhhh-cccccccEEEEeccceeE
Q 041388 253 ITAPKLESLEIYSDLLGSFVM----------HDLHSLKIVKLDIMHAEWAQVDPYRAIQLL-AGINSCKYLYLSAGIMSS 321 (440)
Q Consensus 253 ~~~p~L~~L~~~~~~~~~~~~----------~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~l~~~~~~~ 321 (440)
-..++|+.|.++++....+.. .++++|+.+++...... ..+ ..+. ..+++++.|.|+.+.+..
T Consensus 694 ~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---~lp---~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---SLS---DDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---CCC---GGGSTTTCTTCCEEECCSSCCSS
T ss_pred ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc---cch---HHhhhccCCCcCEEEeCCCCCCc
Confidence 146899999998875443221 12238888888655432 111 2222 478999999999887766
Q ss_pred ee----ecccccccc-cccc---cchhHHHHHHHhccCCCccccc-cccCCCCCccccccceeEEEEEeee
Q 041388 322 VE----LHRNGGRTD-RMAS---TANRAKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKNIEIKGVQ 383 (440)
Q Consensus 322 ~~----~f~~L~~L~-~~~~---~~~~~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~v~i~~~~ 383 (440)
++ .+++|+.|. .... ...-...++.-+..+|+|+.|. ..+.-...|..+..+|+.+.+.+-.
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCT
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCC
Confidence 55 344555554 3210 0111122344567799999998 4332244555556789999987543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.92 E-value=5.5e-06 Score=75.87 Aligned_cols=173 Identities=20% Similarity=0.193 Sum_probs=90.4
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
++++|++.... ...+|. .+..+++|++|+|. ...+...+ .+..+++|++|+|. ..+. . .-...+..++.|+
T Consensus 38 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQ-A-LPIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSC--CSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEECCSSCCC-C-CCTTTTTTCSSCC
T ss_pred CCCEEECcCCC--CCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEECCCCcCC-c-CCHhHcccccCCC
Confidence 45555553221 223443 33447777777777 33333322 13456777777777 6554 1 1224456677777
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEE
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVK 283 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~ 283 (440)
.|.+.++....+. ...--..++|+.|.+. ++ .+.......--..++|++|.++++....+. +.++++|+.++
T Consensus 113 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls-~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 113 ELRLDRNQLKSLP-PRVFDSLTKLTYLSLG-YN---ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp EEECCSSCCCCCC-TTTTTTCTTCCEEECC-SS---CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCccCeeC-HHHhCcCcCCCEEECC-CC---cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 7777776432220 0000123677777776 55 221100000112477778877765443322 44567777777
Q ss_pred EEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388 284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM 319 (440)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 319 (440)
+...... ..+ ...+..+++++.|.++.+.+
T Consensus 188 L~~N~l~---~~~---~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 188 LDNNQLK---RVP---EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCS---CCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCC---cCC---HHHhccccCCCEEEecCCCe
Confidence 7544321 111 23456788899999876643
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.92 E-value=1.4e-05 Score=71.67 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=25.5
Q ss_pred ccccccEEEecCCccccC-CC-CcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeeee
Q 041388 153 SAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
.+++|++|+|.++..+.. ++ .+..+++|++|+|. +. +. ..-...+.+++.|+.|.+.++.
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEEC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCC
Confidence 355555555553311211 11 23345555555555 21 11 1111233445555555555553
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.91 E-value=3.8e-06 Score=85.09 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=101.4
Q ss_pred CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccC-----CCCcccccccceEEEE-EEeCCCcchhhhhccCC
Q 041388 131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQV-----PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCP 203 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~-----~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp 203 (440)
.++.+++..+. ...+|..++ .+++|++|+|+++ .+.. +.....+++|++|+|. +.+.+-......+..++
T Consensus 311 ~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 311 KVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cceEEEeccCc--cccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 56666665432 346777775 4888888888843 3322 1224567888888888 77662111235577888
Q ss_pred CcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEE
Q 041388 204 SLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVK 283 (440)
Q Consensus 204 ~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~ 283 (440)
.|++|++.+|....+ ....-..++|+.|.+. +| .+..-... -.++|++|.++++..... ..++++|+.++
T Consensus 388 ~L~~L~Ls~N~l~~l--p~~~~~~~~L~~L~Ls-~N---~l~~l~~~---~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRNTFHPM--PDSCQWPEKMRFLNLS-ST---GIRVVKTC---IPQTLEVLDVSNNNLDSF-SLFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTCCCCCC--CSCCCCCTTCCEEECT-TS---CCSCCCTT---SCTTCSEEECCSSCCSCC-CCCCTTCCEEE
T ss_pred CCCEEECCCCCCccC--ChhhcccccccEEECC-CC---Ccccccch---hcCCceEEECCCCChhhh-cccCChhcEEE
Confidence 888888888754333 1111123678888887 66 22110000 025788888887655433 35677888777
Q ss_pred EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388 284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE 323 (440)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~ 323 (440)
+....... -+ -...+++++.|.++.+.+..+.
T Consensus 458 Ls~N~l~~---ip-----~~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 458 ISRNKLKT---LP-----DASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CCSSCCSS---CC-----CGGGCTTCCEEECCSSCCCCCC
T ss_pred CCCCccCc---CC-----CcccCccCCEEecCCCccCCcC
Confidence 75554320 00 1235677888888777665543
No 78
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.90 E-value=3.8e-06 Score=70.96 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=64.4
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
++++|++..+.-....+|..+..+++|++|+|. ...+........+++|+.|+|. ..+. + .+..++..+|.|+.|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~-~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISVSNLPKLPKLKKLELSENRIF-G-GLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCCSSCCCCSSCCEEEEESCCCC-S-CCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCChhhhccCCCCCEEECcCCcCc-h-HHHHHHhhCCCCCEEe
Confidence 567776654321112566666668888888888 4445444445677888888888 7776 2 2556667788888888
Q ss_pred EeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388 210 VTCELHDDTPPPNL-II-SSATLKTCKLIVRS 239 (440)
Q Consensus 210 L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~ 239 (440)
+.++....+ ..+ .+ ..++|+.|.+. +|
T Consensus 102 Ls~N~l~~~--~~~~~l~~l~~L~~L~l~-~N 130 (168)
T 2ell_A 102 LSGNKLKDI--STLEPLKKLECLKSLDLF-NC 130 (168)
T ss_dssp CBSSSCCSS--GGGGGGSSCSCCCEEECC-SS
T ss_pred ccCCccCcc--hhHHHHhcCCCCCEEEee-CC
Confidence 888754322 111 11 23677777776 55
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.88 E-value=6.1e-06 Score=75.34 Aligned_cols=146 Identities=20% Similarity=0.155 Sum_probs=88.7
Q ss_pred ccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388 151 IYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT 229 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~ 229 (440)
+..+++|++|++. +..+...+....+++|+.|+|. ..+. +- .. +..++.|+.|.+.++....+ ..+ ..++
T Consensus 37 ~~~l~~L~~L~l~-~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~--~~-l~~l~~L~~L~L~~N~l~~l--~~~--~~~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGD-NSNIQSLAGMQFFTNLKELHLSHNQIS-DL--SP-LKDLTKLEELSVNRNRLKNL--NGI--PSAC 107 (263)
T ss_dssp HHHHTTCSEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG-GTTCSSCCEEECCSSCCSCC--TTC--CCSS
T ss_pred hhhcCcCcEEECc-CCCcccchHHhhCCCCCEEECCCCccC-CC--hh-hccCCCCCEEECCCCccCCc--Ccc--ccCc
Confidence 3457888888888 4455555556678888888888 7776 22 22 77888999999888754333 222 1278
Q ss_pred cceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhccccc
Q 041388 230 LKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINS 308 (440)
Q Consensus 230 L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 308 (440)
|+.|.+. +| .+.. ... .-..++|+.|.++++..... .+..+++|+.+++....... ...+..+++
T Consensus 108 L~~L~L~-~N---~l~~-~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~--------~~~l~~l~~ 173 (263)
T 1xeu_A 108 LSRLFLD-NN---ELRD-TDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN--------TGGLTRLKK 173 (263)
T ss_dssp CCEEECC-SS---CCSB-SGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB--------CTTSTTCCC
T ss_pred ccEEEcc-CC---ccCC-Chh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc--------hHHhccCCC
Confidence 8888887 66 2311 111 11357788888876544322 23456666666654333221 223456667
Q ss_pred ccEEEEeccce
Q 041388 309 CKYLYLSAGIM 319 (440)
Q Consensus 309 l~~L~l~~~~~ 319 (440)
++.|.++.+.+
T Consensus 174 L~~L~l~~N~~ 184 (263)
T 1xeu_A 174 VNWIDLTGQKC 184 (263)
T ss_dssp CCEEEEEEEEE
T ss_pred CCEEeCCCCcc
Confidence 77777766544
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=3.7e-06 Score=86.10 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=101.9
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|.+..+. ...+| .+..+++|+.|+|+ ...+...+....+++|+.|.|. +.+. + +. -+..++.|+.|.
T Consensus 44 ~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls-~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~--l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 44 SIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLN-GNKLTDIKPLTNLKNLGWLFLDENKIK-D--LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TCCCCBCTTCC--CCCCT-TGGGCTTCCEEECT-TSCCCCCGGGGGCTTCCEEECCSSCCC-C--CT-TSTTCTTCCEEE
T ss_pred CCCEEECcCCC--CCCCh-HHccCCCCCEEEee-CCCCCCChhhccCCCCCEEECcCCCCC-C--Ch-hhccCCCCCEEE
Confidence 67776664322 23344 46668899999998 4455444336778899999999 7776 2 22 367789999999
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEee
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMH 288 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~ 288 (440)
|.+|....+ .. -...++|+.|.+. +| .+.. . ...-..++|+.|.++++..... .+..+++|+.+++....
T Consensus 116 Ls~N~l~~l--~~-l~~l~~L~~L~Ls-~N---~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 116 LEHNGISDI--NG-LVHLPQLESLYLG-NN---KITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CTTSCCCCC--GG-GGGCTTCSEEECC-SS---CCCC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ecCCCCCCC--cc-ccCCCccCEEECC-CC---ccCC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence 988754322 11 1134788888888 66 2311 1 0111357888888877654321 25667777777775543
Q ss_pred cccccCCchhhhhhhcccccccEEEEecccee
Q 041388 289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS 320 (440)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~ 320 (440)
... ...+..+++|+.|.|+.+.+.
T Consensus 187 i~~--------l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 187 ISD--------LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCB--------CGGGTTCTTCSEEECCSEEEE
T ss_pred CCC--------ChHHccCCCCCEEEccCCcCc
Confidence 321 223566777788877766544
No 81
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.86 E-value=3.6e-06 Score=87.02 Aligned_cols=239 Identities=15% Similarity=0.115 Sum_probs=142.0
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccc-cceEEEE-EEeCCCcchhhhhcc--CCCc
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPC-VKILSVR-LENPNKSVTENLFCS--CPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-L~~L~L~-~~~~~~~~l~~lls~--cp~L 205 (440)
.+++.|++..+. -...+| .+..+++|++|+|+++.....|.....+++ |++|+|. ..+. . +...+.. ++.|
T Consensus 330 ~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L 404 (636)
T 4eco_A 330 KKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVM 404 (636)
T ss_dssp TTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S--CCSCCCTTCSSCE
T ss_pred CCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c--cchhhhhcccCcc
Confidence 378888885432 123677 677789999999995433333445667888 9999999 7765 2 2233333 4589
Q ss_pred ceEEEeeeeCCCCCCCcEE------ecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEe---e--
Q 041388 206 EELSVTCELHDDTPPPNLI------ISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVM---H-- 274 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~---~-- 274 (440)
+.|++.++...+..+..+. ...++|+.|.+. +| .+......+.-..++|++|.++++....+.. .
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N---~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NN---QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SS---CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CC---ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 9999999854322101111 134689999998 76 2311011111125889999998866543321 1
Q ss_pred -----CCCCeeEEEEEEeecccccCCchhhhhhh-cccccccEEEEeccceeEee----ecccccccc-cccc---cchh
Q 041388 275 -----DLHSLKIVKLDIMHAEWAQVDPYRAIQLL-AGINSCKYLYLSAGIMSSVE----LHRNGGRTD-RMAS---TANR 340 (440)
Q Consensus 275 -----~~~~L~~~~i~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~-~~~~---~~~~ 340 (440)
++++|+.+++...... ..+ ..+. ..+++++.|.++.+.+..++ .+.+|+.|+ .... ...-
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~---~lp---~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT---KLS---DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC---BCC---GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred cccccccCCccEEECcCCcCC---ccC---hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 1227888777554432 111 2222 47899999999988776655 344555554 3210 0111
Q ss_pred HHHHHHHhccCCCccccc-cccCCCCCccccccceeEEEEEeee
Q 041388 341 AKKLTELGKSCPAQEQFG-WLESDFDVPHCLVHTVKNIEIKGVQ 383 (440)
Q Consensus 341 ~~~l~~lL~~~p~L~~L~-~~~~~~~~~~c~~~~L~~v~i~~~~ 383 (440)
...+..-+..+++|++|. ..+.-..+|..+..+|+.+.+.+-.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCT
T ss_pred cccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCC
Confidence 122344556789999998 4322244555566789988887543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.83 E-value=1.1e-05 Score=74.74 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=23.9
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+++|+.|++. ...+...+....+++|++|+|. ..+. +- .. +..++.|+.|.+.++
T Consensus 45 l~~L~~L~l~-~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~--~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 45 LNSIDQIIAN-NSDIKSVQGIQYLPNVTKLFLNGNKLT-DI--KP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHTCCEEECT-TSCCCCCTTGGGCTTCCEEECCSSCCC-CC--GG-GTTCTTCCEEECCSS
T ss_pred cCcccEEEcc-CCCcccChhHhcCCCCCEEEccCCccC-CC--cc-cccCCCCCEEECCCC
Confidence 4445555555 3333333323444555555555 4443 11 11 444555555555544
No 83
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.83 E-value=4.7e-06 Score=78.80 Aligned_cols=124 Identities=8% Similarity=0.029 Sum_probs=66.1
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
+++.|++..+. -....|..+..+++|++|+|. ...+...+ ...+++|++|++. ..+. ......+..++.|+.|.
T Consensus 79 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~-~~~~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 79 HLYALVLVNNK-ISKIHEKAFSPLRKLQKLYIS-KNHLVEIP-PNLPSSLVELRIHDNRIR--KVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TCCEEECCSSC-CCEECGGGSTTCTTCCEEECC-SSCCCSCC-SSCCTTCCEEECCSSCCC--CCCSGGGSSCSSCCEEE
T ss_pred CCcEEECCCCc-cCccCHhHhhCcCCCCEEECC-CCcCCccC-ccccccCCEEECCCCccC--ccCHhHhCCCccCCEEE
Confidence 67777664322 112234455567888888888 44444444 2233778888888 6665 22234466788888888
Q ss_pred EeeeeCCC--CCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEecccc
Q 041388 210 VTCELHDD--TPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLL 268 (440)
Q Consensus 210 L~~c~~~~--~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~ 268 (440)
+.++.... . ..-.+...+|+.|.+. ++ .+...... -.++|++|.++++..
T Consensus 154 l~~n~l~~~~~--~~~~~~~l~L~~L~l~-~n---~l~~l~~~---~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 154 MGGNPLENSGF--EPGAFDGLKLNYLRIS-EA---KLTGIPKD---LPETLNELHLDHNKI 205 (332)
T ss_dssp CCSCCCBGGGS--CTTSSCSCCCSCCBCC-SS---BCSSCCSS---SCSSCSCCBCCSSCC
T ss_pred CCCCccccCCC--CcccccCCccCEEECc-CC---CCCccCcc---ccCCCCEEECCCCcC
Confidence 87764311 1 0001112267777776 55 22110000 125777777766543
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.80 E-value=6.8e-06 Score=76.18 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 130 REVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
.+++.|++.... ...+ |..+..+++|++|+|.+ ..+...+....+++|++|+|. ..+. .+...+..++.|+.
T Consensus 31 ~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCEEECCSSCCS---SCCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCEEECCCCcCC---cCchhhccCCCCCE
Confidence 366666664221 1222 33445577888888883 334333224567788888888 6655 23334567788888
Q ss_pred EEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388 208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRS 239 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~ 239 (440)
|.+.++....+. ...--..++|+.|.+. ++
T Consensus 105 L~l~~N~l~~l~-~~~~~~l~~L~~L~L~-~N 134 (290)
T 1p9a_G 105 LDVSFNRLTSLP-LGALRGLGELQELYLK-GN 134 (290)
T ss_dssp EECCSSCCCCCC-SSTTTTCTTCCEEECT-TS
T ss_pred EECCCCcCcccC-HHHHcCCCCCCEEECC-CC
Confidence 888776432220 0000123566777666 44
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.80 E-value=6.4e-06 Score=84.37 Aligned_cols=142 Identities=19% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.|++..+. ...+|. +..+++|+.|+|. ...+..++....+++|+.|+|. +.+. + + .-+..||.|+.|
T Consensus 65 ~~L~~L~Ls~N~--l~~~~~-l~~l~~L~~L~Ls-~N~l~~l~~l~~l~~L~~L~Ls~N~l~-~--l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 65 PNVTKLFLNGNK--LTDIKP-LTNLKNLGWLFLD-ENKIKDLSSLKDLKKLKSLSLEHNGIS-D--I-NGLVHLPQLESL 136 (605)
T ss_dssp TTCCEEECTTSC--CCCCGG-GGGCTTCCEEECC-SSCCCCCTTSTTCTTCCEEECTTSCCC-C--C-GGGGGCTTCSEE
T ss_pred CCCCEEEeeCCC--CCCChh-hccCCCCCEEECc-CCCCCCChhhccCCCCCEEEecCCCCC-C--C-ccccCCCccCEE
Confidence 366766664321 223333 5557777777777 4455555445667777777777 6665 2 1 225567777777
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEe
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIM 287 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~ 287 (440)
.|.+|....+ .. --..++|+.|.+. +| .+.. ... .-..++|+.|.++++....+ .+.++++|+.+.+...
T Consensus 137 ~Ls~N~l~~l--~~-l~~l~~L~~L~Ls-~N---~l~~-~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 137 YLGNNKITDI--TV-LSRLTKLDTLSLE-DN---QISD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ECCSSCCCCC--GG-GGSCTTCSEEECC-SS---CCCC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred ECCCCccCCc--hh-hcccCCCCEEECc-CC---cCCC-chh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 7777643221 11 0123667777776 55 2211 111 22356777777776543332 2455667777666544
Q ss_pred e
Q 041388 288 H 288 (440)
Q Consensus 288 ~ 288 (440)
.
T Consensus 208 ~ 208 (605)
T 1m9s_A 208 E 208 (605)
T ss_dssp E
T ss_pred c
Confidence 3
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.80 E-value=4.1e-05 Score=76.92 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccC---CCCcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV---PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
..+++|++.... ...+|.. .+++|++|+|++ ..+.. |.....+++|++|+|. ..+. .. .+..++.|
T Consensus 69 ~~L~~L~Ls~N~--l~~lp~~--~l~~L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~~----~~~~l~~L 138 (520)
T 2z7x_B 69 QELEYLDLSHNK--LVKISCH--PTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLE-KS----SVLPIAHL 138 (520)
T ss_dssp TTCCEEECCSSC--CCEEECC--CCCCCSEEECCS-SCCSSCCCCGGGGGCTTCCEEEEEESSCC-GG----GGGGGTTS
T ss_pred cCCCEEecCCCc--eeecCcc--ccCCccEEeccC-CccccccchhhhccCCcceEEEecCcccc-hh----hccccccc
Confidence 367777775332 2345554 677888888884 33332 2345667788888888 6665 32 24556777
Q ss_pred --ceEEEeeee
Q 041388 206 --EELSVTCEL 214 (440)
Q Consensus 206 --e~L~L~~c~ 214 (440)
++|.+.++.
T Consensus 139 ~L~~L~l~~n~ 149 (520)
T 2z7x_B 139 NISKVLLVLGE 149 (520)
T ss_dssp CEEEEEEEECT
T ss_pred eeeEEEeeccc
Confidence 888888764
No 87
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.79 E-value=4.3e-06 Score=75.72 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=32.8
Q ss_pred cCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388 26 RISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV 60 (440)
Q Consensus 26 ~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l 60 (440)
.+++||+||+.+|||||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999963
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.78 E-value=9.1e-06 Score=73.51 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=44.3
Q ss_pred eecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
..+|..+. ++|+.|+|. ...+.. ++ ....+++|++|+|. ..+. . .....+..++.|++|.|.++....+. .
T Consensus 27 ~~~p~~~~--~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~ 100 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYNQLQ-T-LSAGVFDDLTELGTLGLANNQLASLP-L 100 (251)
T ss_dssp SSCCSCCC--TTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCCC-C-CCTTTTTTCTTCCEEECTTSCCCCCC-T
T ss_pred cccCCCCC--CCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCCcCC-c-cCHhHhccCCcCCEEECCCCcccccC-h
Confidence 34454433 467777777 333332 22 24456777777777 6554 1 22334556677777777665332220 0
Q ss_pred cEEecccccceeEEEeec
Q 041388 222 NLIISSATLKTCKLIVRS 239 (440)
Q Consensus 222 ~l~i~~~~L~~L~i~~~~ 239 (440)
..--..++|+.|.+. ++
T Consensus 101 ~~~~~l~~L~~L~L~-~N 117 (251)
T 3m19_A 101 GVFDHLTQLDKLYLG-GN 117 (251)
T ss_dssp TTTTTCTTCCEEECC-SS
T ss_pred hHhcccCCCCEEEcC-CC
Confidence 000123566666665 44
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.77 E-value=1.4e-06 Score=83.62 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=27.6
Q ss_pred hhhccc-ccccEEEEeccceeE-----ee----e-cccccccc-cccc-cchhHHHHHHHhccCCCccccc
Q 041388 301 QLLAGI-NSCKYLYLSAGIMSS-----VE----L-HRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 301 ~~l~~~-~~l~~L~l~~~~~~~-----~~----~-f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..+..+ ++++.|.++.+.+.. +. . ..+|+.|+ ..+. .......+..+++.+++|+.|.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 344444 377777776654443 11 1 12455554 2220 0222344455556666666665
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.77 E-value=7.9e-05 Score=75.71 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=25.7
Q ss_pred cccccccEEEEeccceeEee-----ecccccccc-cccccchhHHHHHHHhccCCCccccc
Q 041388 304 AGINSCKYLYLSAGIMSSVE-----LHRNGGRTD-RMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 304 ~~~~~l~~L~l~~~~~~~~~-----~f~~L~~L~-~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..+++++.|.++.+.+.... .+++|+.|. ... .-.....+...+..+++|+.|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEE
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEE
Confidence 45566777776665444311 233344443 222 0112223444556666666665
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.75 E-value=5.8e-06 Score=78.14 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=105.0
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
.+++.|++... ....+|..++ ++|++|++. ...+...+ ....+++|++|++. ..+.........+..+ .|+
T Consensus 102 ~~L~~L~L~~n--~l~~l~~~~~--~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 102 RKLQKLYISKN--HLVEIPPNLP--SSLVELRIH-DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TTCCEEECCSS--CCCSCCSSCC--TTCCEEECC-SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CCCCEEECCCC--cCCccCcccc--ccCCEEECC-CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 47888888543 2346776655 899999999 44444433 25678999999999 7775111222334444 899
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE---EeeCCCCeeEEE
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF---VMHDLHSLKIVK 283 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~ 283 (440)
.|.+.++....++ .. ..++|+.|.+. ++ .+.......-...++|++|.++++..... .+..+++|+.++
T Consensus 176 ~L~l~~n~l~~l~-~~---~~~~L~~L~l~-~n---~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 176 YLRISEAKLTGIP-KD---LPETLNELHLD-HN---KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp CCBCCSSBCSSCC-SS---SCSSCSCCBCC-SS---CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred EEECcCCCCCccC-cc---ccCCCCEEECC-CC---cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 9999887543331 11 12689999988 66 22110000112357899999887654432 245677888777
Q ss_pred EEEeecccccCCchhhhhhhcccccccEEEEeccceeEee
Q 041388 284 LDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE 323 (440)
Q Consensus 284 i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~ 323 (440)
+...... .. ...+..+++++.|.++.+.+..+.
T Consensus 248 L~~N~l~---~l----p~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 248 LDNNKLS---RV----PAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCSSCCC---BC----CTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCcCe---ec----ChhhhcCccCCEEECCCCCCCccC
Confidence 7554332 01 122466788888888777665543
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.72 E-value=4.5e-05 Score=68.26 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=29.2
Q ss_pred cccEEEecCCccccC-CC-CcccccccceEEEE-EE-eCCCcchhhhhccCCCcceEEEeee
Q 041388 156 CLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LE-NPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 156 ~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+|++|+|.+ ..+.. ++ ....+++|++|+|. .. +. ..-...+..++.|++|.+.+|
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEE
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCC
Confidence 667777763 33322 22 24456667777776 54 33 111223456677777777663
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.71 E-value=0.00018 Score=68.45 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=103.5
Q ss_pred CCcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCC--CcccccccceEEEE--EEeCCCcchhhhhccCCC
Q 041388 130 REVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR--LENPNKSVTENLFCSCPS 204 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~ 204 (440)
.++++|++... ....+|...| .+++|++|+|+++......+ .+.++++|+.+... ..+. ..-...+..++.
T Consensus 30 ~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~--~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL--YINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC--EECTTSBCCCTT
T ss_pred CCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc--ccCchhhhhccc
Confidence 37788887643 2356777655 48999999998554333322 23455665554333 2222 111345678899
Q ss_pred cceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEE-----ecCCceEEEEeccccccEEee--CCC
Q 041388 205 LEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTI-----TAPKLESLEIYSDLLGSFVMH--DLH 277 (440)
Q Consensus 205 Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~-----~~p~L~~L~~~~~~~~~~~~~--~~~ 277 (440)
|+.|.+.++...... .........+..|.+. ++.. ...+.. -...++.|.++++....+... ..+
T Consensus 106 L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~-~~~~------i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 106 LQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQ-DNIN------IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp CCEEEEEEECCSSCC-CCTTCCBSSCEEEEEE-SCTT------CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred cccccccccccccCC-chhhcccchhhhhhhc-cccc------cccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 999999998543321 1111234556666665 4311 112211 124677888877654433222 223
Q ss_pred CeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccceeEee--ecccccccc
Q 041388 278 SLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD 332 (440)
Q Consensus 278 ~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~ 332 (440)
+|..+.+....... ..+ ...+.++++++.|+++.+.+..++ .|.+|++|+
T Consensus 178 ~L~~l~l~~~n~l~--~i~---~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 178 QLDELNLSDNNNLE--ELP---NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp EEEEEECTTCTTCC--CCC---TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred chhHHhhccCCccc--CCC---HHHhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 34443332111110 111 345678899999999998888776 688888887
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.70 E-value=4.8e-05 Score=77.33 Aligned_cols=124 Identities=17% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 130 REVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
.++++|++.... ...+|. .+..+++|++|+|+++..-..++ ....+++|++|+|. ..+. . +... .++.|+
T Consensus 52 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~--lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N--ISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-E--ECSC--CCTTCS
T ss_pred CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-c--cCcc--ccccCC
Confidence 477777775332 234443 44557888888888432222222 35567788888888 6554 1 1111 678888
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCc--eEEEEeccc
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKL--ESLEIYSDL 267 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L--~~L~~~~~~ 267 (440)
+|++.++....+.....--..++|+.|.+. ++ .+.... ....++| ++|.++++.
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-~n---~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-AA---KFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEE-CS---BCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred EEECCCCCccccCchHhhcccCcccEEecC-CC---ccccCc---hhhhhhceeeEEEeeccc
Confidence 888888643221000001123678888887 55 221100 0112445 788777653
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.68 E-value=7.2e-06 Score=76.83 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCcEEEEEEEccCceeecCccc--cccccccEEEecCCccccCCC-Ccccc-----cccceEEEE-EEeCCCcchhhhhc
Q 041388 130 REVGEIQLYLGQQSRVELPEAI--YSAACLKVLTLDSDFSIQVPS-SGTCF-----PCVKILSVR-LENPNKSVTENLFC 200 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~l~~~~-~~~~~-----~~L~~L~L~-~~~~~~~~l~~lls 200 (440)
.++++|++....- ...+|..+ ..+++|++|+|++ ..+...+ ....+ ++|++|+|. ..+. . .....+.
T Consensus 95 ~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~-~-~~~~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-N-FSCEQVR 170 (312)
T ss_dssp SCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCC-C-CCTTTCC
T ss_pred CCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCc-c-chHHHhc
Confidence 3555665543221 12334433 3355566666652 2222212 11222 556666665 5443 1 1112344
Q ss_pred cCCCcceEEEeee
Q 041388 201 SCPSLEELSVTCE 213 (440)
Q Consensus 201 ~cp~Le~L~L~~c 213 (440)
.++.|++|++.++
T Consensus 171 ~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 171 VFPALSTLDLSDN 183 (312)
T ss_dssp CCSSCCEEECCSC
T ss_pred cCCCCCEEECCCC
Confidence 5555666665554
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.68 E-value=7.6e-06 Score=85.24 Aligned_cols=172 Identities=12% Similarity=0.124 Sum_probs=79.1
Q ss_pred ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388 155 ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT 232 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~ 232 (440)
++|+.|+|.++.....+ .....+++|+.|+|. ..+. ...-...+.+++.|++|++.+|......+.. -...++|+.
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE-EECCSGGGTTCTTCCEEECCSCSEEECCTTT-TTTCTTCCE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc-cccCcccccCcccccEEecCCCCcceeChhh-hhcCccccc
Confidence 57778887733222222 234567778888777 5544 2111244567777777777776321110000 012456666
Q ss_pred eEEEeecccccccc--cccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCch-hh-hhhhcc
Q 041388 233 CKLIVRSEDMLFRE--VDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPY-RA-IQLLAG 305 (440)
Q Consensus 233 L~i~~~~~~~~~~~--~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~-~~-~~~l~~ 305 (440)
|.+. ++ .+.. ......-..++|+.|.++++....+. +.++++|+.+++.......-....+ +. ...+.+
T Consensus 459 L~l~-~n---~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 459 LMLR-RV---ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp EECT-TS---CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred chhc-cc---cccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 6665 44 1100 00000012456666666655433221 3455666666554433210000000 00 122455
Q ss_pred cccccEEEEeccceeEee--ecccccccc
Q 041388 306 INSCKYLYLSAGIMSSVE--LHRNGGRTD 332 (440)
Q Consensus 306 ~~~l~~L~l~~~~~~~~~--~f~~L~~L~ 332 (440)
+++++.|.++.+.+..++ .|.++++|+
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 666666666665555444 244444443
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.67 E-value=1.2e-05 Score=83.67 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=90.3
Q ss_pred ceeeEEEEeeCCCC--hhhHHHHHHHHHcCCcEEEEEEEccCceeec-CccccccccccEEEecCCccccCCC--Ccccc
Q 041388 103 KIGKFSLYCSRPTN--LARFYDWIATALMREVGEIQLYLGQQSRVEL-PEAIYSAACLKVLTLDSDFSIQVPS--SGTCF 177 (440)
Q Consensus 103 ~v~~l~l~~~~~~~--~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~ 177 (440)
.++.+.+....-.. ...+. .-.+++.|++.... ...+ |..+..+++|++|+|.+ ..+...+ ....+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFT------RYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFC 96 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGG------GGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTC
T ss_pred CCcEEECCCCCCCCcCHHHHh------CCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCC-CccCccChhhhccC
Confidence 57777776543222 11111 12478888775321 2223 44455688899999884 3443333 35678
Q ss_pred cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccc-cEEE-Ee
Q 041388 178 PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVD-YMLT-IT 254 (440)
Q Consensus 178 ~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~-~~l~-~~ 254 (440)
++|++|+|. ..+. . .....+..++.|++|++.+|......+..+ -..++|+.|.+. ++ .+.... ..+. ..
T Consensus 97 ~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~-~n---~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 97 TNLTELHLMSNSIQ-K-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLS-NN---KIQALKSEELDIFA 169 (680)
T ss_dssp TTCSEEECCSSCCC-C-CCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECC-SS---CCCCBCHHHHGGGT
T ss_pred CCCCEEECCCCccC-c-cChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEcc-CC---cccccCHHHhhccc
Confidence 889999888 7665 2 122345678889999988874322210111 135788888887 65 221000 0000 12
Q ss_pred cCCceEEEEeccccccE---EeeCCCCeeEEEE
Q 041388 255 APKLESLEIYSDLLGSF---VMHDLHSLKIVKL 284 (440)
Q Consensus 255 ~p~L~~L~~~~~~~~~~---~~~~~~~L~~~~i 284 (440)
.++|++|.++++..... .+.++++|+.+.+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 36788888877543222 1234455555443
No 98
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.65 E-value=8.3e-06 Score=74.83 Aligned_cols=127 Identities=19% Similarity=0.191 Sum_probs=69.2
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
++++|++... ....++. .+..+++|++|+|.++ .+.. ++ ....+++|++|+|. ..+. . .....+..++.|+
T Consensus 29 ~l~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ-S-LALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTC--CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC-E-ECTTTTTTCTTCC
T ss_pred CccEEECCCC--cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC-c-cChhhhcCCcccc
Confidence 5666666322 1233443 4455788888888843 3332 22 35567788888888 6654 1 1223456778888
Q ss_pred eEEEeeeeCCCCCCCcEEe-cccccceeEEEeecccccccccc-cEEEEecCCceEEEEecccc
Q 041388 207 ELSVTCELHDDTPPPNLII-SSATLKTCKLIVRSEDMLFREVD-YMLTITAPKLESLEIYSDLL 268 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~~~~~~~~~~-~~l~~~~p~L~~L~~~~~~~ 268 (440)
+|.+.++..... ....+ ..++|+.|.+. ++ .+.... ....-..++|++|.++++..
T Consensus 104 ~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~-~n---~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 104 KLVAVETNLASL--ENFPIGHLKTLKELNVA-HN---LIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp EEECTTSCCCCS--TTCCCTTCTTCCEEECC-SS---CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEECCCCCcccc--CchhcccCCCCCEEECc-CC---ccceecCchhhccCCCCCEEECCCCCC
Confidence 888877644333 22122 33677888777 55 221000 00011246777777766543
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.65 E-value=2.8e-06 Score=70.16 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=59.0
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
++++|++..+.-....+|..+..+++|++|+|. +..+...+....+++|++|+|. ..+. + .+...+..++.|+.|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~Ls~n~i~-~-~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSIANLPKLNKLKKLELSDNRVS-G-GLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCCTTCCCCTTCCEEECCSSCCC-S-CTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCchhhhcCCCCCEEECCCCccc-c-hHHHHhhhCCCCCEEE
Confidence 466665543221112466655667788888887 4444444445567788888888 7665 2 2556666778888888
Q ss_pred EeeeeCCCCCCC--cEEecccccceeEEEeec
Q 041388 210 VTCELHDDTPPP--NLIISSATLKTCKLIVRS 239 (440)
Q Consensus 210 L~~c~~~~~~~~--~l~i~~~~L~~L~i~~~~ 239 (440)
+.++..... . ..--..++|+.|.+. +|
T Consensus 95 ls~N~i~~~--~~~~~~~~l~~L~~L~l~-~N 123 (149)
T 2je0_A 95 LSGNKIKDL--STIEPLKKLENLKSLDLF-NC 123 (149)
T ss_dssp CTTSCCCSH--HHHGGGGGCTTCCEEECT-TC
T ss_pred CCCCcCCCh--HHHHHHhhCCCCCEEeCc-CC
Confidence 877643211 0 000123566666666 54
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.58 E-value=2.5e-05 Score=65.74 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=53.6
Q ss_pred cccccEEEecCCcccc--C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388 154 AACLKVLTLDSDFSIQ--V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT 229 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~--~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~ 229 (440)
.++|++|+|. +..+. . +.....+++|+.|+|. +.+. +. ..+..++.|+.|++.+|...... ....-..++
T Consensus 23 ~~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV---SNLPKLPKLKKLELSENRIFGGL-DMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC---SSCCCCSSCCEEEEESCCCCSCC-CHHHHHCTT
T ss_pred cccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch---hhhccCCCCCEEECcCCcCchHH-HHHHhhCCC
Confidence 4789999999 44554 3 3334678999999999 8776 32 55678999999999997543210 111112577
Q ss_pred cceeEEEeec
Q 041388 230 LKTCKLIVRS 239 (440)
Q Consensus 230 L~~L~i~~~~ 239 (440)
|+.|.+. +|
T Consensus 97 L~~L~Ls-~N 105 (168)
T 2ell_A 97 LTHLNLS-GN 105 (168)
T ss_dssp CCEEECB-SS
T ss_pred CCEEecc-CC
Confidence 8888877 65
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.57 E-value=1.6e-05 Score=71.96 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=94.4
Q ss_pred ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccccccee
Q 041388 155 ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTC 233 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L 233 (440)
.+.+++++. +..+...| ..-.++|+.|+|. ..+. . .....+..++.|++|.|.++...... ...--..++|+.|
T Consensus 14 ~~~~~l~~~-~~~l~~~p-~~~~~~l~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQ-GKSLDSVP-SGIPADTEKLDLQSTGLA-T-LSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECT-TCCCSSCC-SCCCTTCCEEECTTSCCC-C-CCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEE
T ss_pred CCCeEEecC-CCCccccC-CCCCCCCCEEEccCCCcC-c-cCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEE
Confidence 567889988 55666655 2233789999999 8776 2 22345778999999999997543221 0001124789999
Q ss_pred EEEeecccccccccccEEEEecCCceEEEEeccccccEE---eeCCCCeeEEEEEEeecccccCCchhhhhhhccccccc
Q 041388 234 KLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFV---MHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCK 310 (440)
Q Consensus 234 ~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~---~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~ 310 (440)
.+. ++ .+.......--..++|++|.++++....+. +.++++|+.+++....... .+ ...+..+++++
T Consensus 89 ~L~-~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~---~~~~~~l~~L~ 158 (251)
T 3m19_A 89 GLA-NN---QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS---IP---AGAFDKLTNLQ 158 (251)
T ss_dssp ECT-TS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CC---TTTTTTCTTCC
T ss_pred ECC-CC---cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc---cC---HHHcCcCcCCC
Confidence 998 66 231100011123588999999887554332 3557778777775443211 11 22356677888
Q ss_pred EEEEeccceeEee
Q 041388 311 YLYLSAGIMSSVE 323 (440)
Q Consensus 311 ~L~l~~~~~~~~~ 323 (440)
.|.|+.+.+..+.
T Consensus 159 ~L~L~~N~l~~~~ 171 (251)
T 3m19_A 159 TLSLSTNQLQSVP 171 (251)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEECCCCcCCccC
Confidence 8888777665544
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.56 E-value=7.5e-06 Score=76.69 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=63.6
Q ss_pred CcEEEEEEEccCceeecCcccccc-----ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhh--hcc
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSA-----ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENL--FCS 201 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~-----~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~l--ls~ 201 (440)
.+++|++.... ...+|..+... ++|++|+|+++.....+ .....+++|++|+|. ..+.+...+..- +..
T Consensus 122 ~L~~L~Ls~N~--l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVS--WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCB--CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCC--CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 66777775422 12224444333 67777777733322222 234567777777777 654311111111 256
Q ss_pred CCCcceEEEeeeeCCCCCCCcEE----ecccccceeEEEeecccccccccc-cEEEEecCCceEEEEecccc
Q 041388 202 CPSLEELSVTCELHDDTPPPNLI----ISSATLKTCKLIVRSEDMLFREVD-YMLTITAPKLESLEIYSDLL 268 (440)
Q Consensus 202 cp~Le~L~L~~c~~~~~~~~~l~----i~~~~L~~L~i~~~~~~~~~~~~~-~~l~~~~p~L~~L~~~~~~~ 268 (440)
++.|++|++.++..... ..+. -..++|+.|.+. ++ .+.... .......++|++|.++++..
T Consensus 200 l~~L~~L~L~~N~l~~~--~~~~~~~~~~l~~L~~L~Ls-~N---~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETP--SGVCSALAAARVQLQGLDLS-HN---SLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CTTCCEEECTTSCCCCH--HHHHHHHHHTTCCCSEEECT-TS---CCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCcch--HHHHHHHHhcCCCCCEEECC-CC---cCCcccchhhhhhcCCCCEEECCCCcc
Confidence 77777777777643211 1111 022567777776 55 221100 01111246777777766543
No 103
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=6.5e-06 Score=69.61 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=28.9
Q ss_pred cccccEEEecCCccccCCC--CcccccccceEEEE-EE-eCCCcchhhhhcc---CCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LE-NPNKSVTENLFCS---CPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~-~~~~~~l~~lls~---cp~Le~L~L~~c 213 (440)
.-.|++|+|+ .+.+++.. ...++++|++|+|. |. ++ |.++..+... |+.|++|+|.+|
T Consensus 60 ~~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 60 KYKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred CceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCC
Confidence 3456666666 33343321 12345555666665 53 33 5555555442 455666666555
No 104
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.48 E-value=2.1e-05 Score=77.49 Aligned_cols=40 Identities=20% Similarity=0.486 Sum_probs=36.8
Q ss_pred CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHHhcc
Q 041388 24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNVWTA 63 (440)
Q Consensus 24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~lw~~ 63 (440)
.|.|+.||+||+.+||+||+.+++++++.|||+|+++...
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999999976443
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.47 E-value=7.5e-05 Score=71.27 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCceeeEEEEeeCCC-C--hhhHHHHHHHHH-cCCcEEEEEEEccCc--------eeecCcccccccc
Q 041388 89 ADFVHTVLLRTNPAKIGKFSLYCSRPT-N--LARFYDWIATAL-MREVGEIQLYLGQQS--------RVELPEAIYSAAC 156 (440)
Q Consensus 89 ~~~v~~~L~~~~~~~v~~l~l~~~~~~-~--~~~~~~wi~~~~-~~~l~~L~l~~~~~~--------~~~lp~~l~~~~~ 156 (440)
.+.+.++|.......|+.+.+..-... . ...+..++..+. -.+++.|.+...... ...++..+..+++
T Consensus 94 ~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~ 173 (362)
T 2ra8_A 94 VNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL 173 (362)
T ss_dssp CCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT
T ss_pred HHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC
Confidence 344556666655556787777643211 1 123444443221 248999987421110 1124444556899
Q ss_pred ccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhh-ccCCCcceEEEee
Q 041388 157 LKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLF-CSCPSLEELSVTC 212 (440)
Q Consensus 157 L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~ll-s~cp~Le~L~L~~ 212 (440)
|+.|.|.++..+..++ ...++|++|.|. +.+. +..+..+. +.+|.|+.|.|..
T Consensus 174 L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~-~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 174 LNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLP-DSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCC-HHHHHHHHHSBCTTCCEEEEEC
T ss_pred CcEEEEeCCCCceecc--ccCCCCcEEEEecCCCC-hHHHHHHHHccCCCCcEEEEec
Confidence 9999998553344333 347899999999 8877 66666665 3799999999964
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.47 E-value=5.1e-06 Score=79.61 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=124.1
Q ss_pred CccccccccccEEEecCCccccCCC------Cccccc-ccceEEEE-EEeCCCcc---hhhhhccC-CCcceEEEeeeeC
Q 041388 148 PEAIYSAACLKVLTLDSDFSIQVPS------SGTCFP-CVKILSVR-LENPNKSV---TENLFCSC-PSLEELSVTCELH 215 (440)
Q Consensus 148 p~~l~~~~~L~~L~L~~~~~l~~~~------~~~~~~-~L~~L~L~-~~~~~~~~---l~~lls~c-p~Le~L~L~~c~~ 215 (440)
|..+...++|++|+|+ ...+...+ ....++ +|++|+|. +.+. +.. +..++..+ +.|++|+|.+|..
T Consensus 15 ~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3333345669999999 55565543 123566 89999999 8877 332 44444444 9999999999853
Q ss_pred CCCCCCcEE----e-cc-cccceeEEEeeccccccccccc-EEE--Ee--cCCceEEEEeccccccEEeeCCCCeeEEEE
Q 041388 216 DDTPPPNLI----I-SS-ATLKTCKLIVRSEDMLFREVDY-MLT--IT--APKLESLEIYSDLLGSFVMHDLHSLKIVKL 284 (440)
Q Consensus 216 ~~~~~~~l~----i-~~-~~L~~L~i~~~~~~~~~~~~~~-~l~--~~--~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i 284 (440)
... ..-. + .. ++|+.|.+. +| .+..... .+. +. .++|++|.++++....
T Consensus 93 ~~~--~~~~l~~~l~~~~~~L~~L~Ls-~N---~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------------- 152 (362)
T 3goz_A 93 SYK--SSDELVKTLAAIPFTITVLDLG-WN---DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------------- 152 (362)
T ss_dssp GGS--CHHHHHHHHHTSCTTCCEEECC-SS---CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------------
T ss_pred ChH--HHHHHHHHHHhCCCCccEEECc-CC---cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------------
Confidence 222 1110 1 11 678888887 66 2321000 000 00 1367777776543211
Q ss_pred EEeecccccCCchhh-hhhhcccc-cccEEEEeccceeEee---------ec-ccccccc-cccc-cchhHHHHHHHhcc
Q 041388 285 DIMHAEWAQVDPYRA-IQLLAGIN-SCKYLYLSAGIMSSVE---------LH-RNGGRTD-RMAS-TANRAKKLTELGKS 350 (440)
Q Consensus 285 ~~~~~~~~~~~~~~~-~~~l~~~~-~l~~L~l~~~~~~~~~---------~f-~~L~~L~-~~~~-~~~~~~~l~~lL~~ 350 (440)
... .. ...+..++ +++.|.++.+.+.... .+ .+|+.|+ ..+. .......+...+..
T Consensus 153 ---------~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 153 ---------KSS-DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------SCH-HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------HHH-HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 000 11 33445555 8999999887664332 33 4788887 4431 12233446666655
Q ss_pred -CCCccccc-cccC-CCCC----cc--ccccceeEEEEEeee---cCcchHHHHHHHHhhccccceEEEEee
Q 041388 351 -CPAQEQFG-WLES-DFDV----PH--CLVHTVKNIEIKGVQ---GDEDERPLLKYLLQFAAAMEKMLMWAK 410 (440)
Q Consensus 351 -~p~L~~L~-~~~~-~~~~----~~--c~~~~L~~v~i~~~~---~~~~~~~~~~~ll~~a~~L~~m~i~~~ 410 (440)
+++|++|. ..+. +... .. ....+|+.+.+.+.. -....+..+..-+.+.+.|+.+.+...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 56999998 4321 1111 11 224679999998654 122223333333344555555555443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.40 E-value=0.00013 Score=64.44 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=37.6
Q ss_pred eecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
..+|..+. ++|+.|+|.++ .+.. ++ .+..+++|+.|+|. ..+. ......+.+++.|+.|+|.++.
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSC
T ss_pred CcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCc
Confidence 34555433 56777777733 3322 22 34567777777777 6554 1223345667777777777754
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.35 E-value=1.3e-05 Score=73.07 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=98.1
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccce
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKT 232 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~ 232 (440)
..+++.+.++ ...+...+....+++|+.|++. ..+. + +. -+..++.|++|.|.++....+ .. --..++|+.
T Consensus 18 l~~l~~l~l~-~~~i~~~~~~~~l~~L~~L~l~~n~i~-~--l~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLG-KQSVTDLVSQKELSGVQNFNGDNSNIQ-S--LA-GMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHT-CSCTTSEECHHHHTTCSEEECTTSCCC-C--CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCE
T ss_pred HHHHHHHHhc-CCCcccccchhhcCcCcEEECcCCCcc-c--ch-HHhhCCCCCEEECCCCccCCC--hh-hccCCCCCE
Confidence 4556666777 4444444346678999999999 8776 2 22 367899999999999865444 22 113488999
Q ss_pred eEEEeecccccccccccEEEEecCCceEEEEeccccccE-EeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccE
Q 041388 233 CKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF-VMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKY 311 (440)
Q Consensus 233 L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~-~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~ 311 (440)
|.+. ++ .+.. ...+. .++|++|.++++..... .+.++++|+.+++....... ...+..+++++.
T Consensus 90 L~L~-~N---~l~~-l~~~~--~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--------~~~l~~l~~L~~ 154 (263)
T 1xeu_A 90 LSVN-RN---RLKN-LNGIP--SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS--------IVMLGFLSKLEV 154 (263)
T ss_dssp EECC-SS---CCSC-CTTCC--CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB--------CGGGGGCTTCCE
T ss_pred EECC-CC---ccCC-cCccc--cCcccEEEccCCccCCChhhcCcccccEEECCCCcCCC--------ChHHccCCCCCE
Confidence 9998 77 2321 11111 18999999988754432 24567777777764433221 223566778888
Q ss_pred EEEeccceeEee---ecccccccc
Q 041388 312 LYLSAGIMSSVE---LHRNGGRTD 332 (440)
Q Consensus 312 L~l~~~~~~~~~---~f~~L~~L~ 332 (440)
|.++.+.+..+. .+++|+.|+
T Consensus 155 L~L~~N~i~~~~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 155 LDLHGNEITNTGGLTRLKKVNWID 178 (263)
T ss_dssp EECTTSCCCBCTTSTTCCCCCEEE
T ss_pred EECCCCcCcchHHhccCCCCCEEe
Confidence 888776655444 344444444
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.34 E-value=1.1e-05 Score=75.59 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=126.6
Q ss_pred ceeeEEEEeeCCCChhhHHHHHHHHHcCCcEEEEEEEccCceeecCccc--cccccccEEEecCCccccCC-C-----Cc
Q 041388 103 KIGKFSLYCSRPTNLARFYDWIATALMREVGEIQLYLGQQSRVELPEAI--YSAACLKVLTLDSDFSIQVP-S-----SG 174 (440)
Q Consensus 103 ~v~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~l~~~-~-----~~ 174 (440)
.++.+.+.-.. .....+...........+++|++..+. -....|..+ ...++|++|+|. ...+... + ..
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHh
Confidence 46666655322 124445555555555679999997542 123455555 568999999999 4444331 1 12
Q ss_pred ccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCC---CCCCcEE-ecccccceeEEEeeccccccccccc
Q 041388 175 TCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDD---TPPPNLI-ISSATLKTCKLIVRSEDMLFREVDY 249 (440)
Q Consensus 175 ~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~---~~~~~l~-i~~~~L~~L~i~~~~~~~~~~~~~~ 249 (440)
..+++|++|+|. ..+. ......++.++.|++|+|.++.... .. .... -..++|+.|.+. +| .+.. ..
T Consensus 142 ~~~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~l~~L~~L~Ls-~N---~l~~-l~ 213 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSP--AFSCEQVRAFPALTSLDLSDNPGLGERGLM-AALCPHKFPAIQNLALR-NT---GMET-PT 213 (310)
T ss_dssp TBCSCCCEEEEECCSSC--CCCTTSCCCCTTCCEEECCSCTTCHHHHHH-TTSCTTSSCCCCSCBCC-SS---CCCC-HH
T ss_pred hhccCCCEEEeeCCCcc--hhhHHHhccCCCCCEEECCCCCCccchhhh-HHHhhhcCCCCCEEECC-CC---CCCc-hH
Confidence 358899999999 8775 2334556789999999999974211 00 0011 134789999998 77 3310 01
Q ss_pred E----EEEecCCceEEEEeccccccEE---eeCC---CCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388 250 M----LTITAPKLESLEIYSDLLGSFV---MHDL---HSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM 319 (440)
Q Consensus 250 ~----l~~~~p~L~~L~~~~~~~~~~~---~~~~---~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 319 (440)
. +.-..++|++|.++++...... +..+ ++|+.+++....... .+ ..+ .++++.|.++.+.+
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---lp---~~~---~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---VP---KGL---PAKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---CC---SCC---CSCCSCEECCSCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc---hh---hhh---cCCCCEEECCCCcC
Confidence 1 1123589999999887654331 3333 688888886544321 11 111 27899999998877
Q ss_pred eEee---ecccccccc
Q 041388 320 SSVE---LHRNGGRTD 332 (440)
Q Consensus 320 ~~~~---~f~~L~~L~ 332 (440)
..++ .+++|+.|+
T Consensus 285 ~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 285 NRAPQPDELPEVDNLT 300 (310)
T ss_dssp CSCCCTTSCCCCSCEE
T ss_pred CCCchhhhCCCccEEE
Confidence 7655 445555555
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.33 E-value=7.2e-05 Score=69.81 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=28.3
Q ss_pred CCceEEEEeccccccEEeeCCCCeeEEEEEEeecccccCCchhhhhhhcccccccEEEEeccce
Q 041388 256 PKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIM 319 (440)
Q Consensus 256 p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~ 319 (440)
|+|++|.++++....+...-.++|+.+++....... ...+..+++++.|.++.+.+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~--------~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR--------APQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS--------CCCTTSCCCCSCEECSSTTT
T ss_pred CcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC--------CchhhhCCCccEEECcCCCC
Confidence 466666665544333222222455555554333211 11235668888888877644
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.26 E-value=0.00014 Score=73.71 Aligned_cols=174 Identities=13% Similarity=0.067 Sum_probs=106.3
Q ss_pred cCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 129 MREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 129 ~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
..+++.|++.... ...+|..++ ++|++|+|+ +..+...| ..+++|++|+|. ..+. . +.. +.. .|+.
T Consensus 58 ~~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls-~N~l~~ip--~~l~~L~~L~Ls~N~l~-~--ip~-l~~--~L~~ 124 (571)
T 3cvr_A 58 INQFSELQLNRLN--LSSLPDNLP--PQITVLEIT-QNALISLP--ELPASLEYLDACDNRLS-T--LPE-LPA--SLKH 124 (571)
T ss_dssp HTTCSEEECCSSC--CSCCCSCCC--TTCSEEECC-SSCCSCCC--CCCTTCCEEECCSSCCS-C--CCC-CCT--TCCE
T ss_pred cCCccEEEeCCCC--CCccCHhHc--CCCCEEECc-CCCCcccc--cccCCCCEEEccCCCCC-C--cch-hhc--CCCE
Confidence 3478888886432 234777664 789999999 44555554 457899999999 8776 2 333 322 9999
Q ss_pred EEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEe
Q 041388 208 LSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIM 287 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~ 287 (440)
|.|.++....+ .. ..++|+.|.+. ++ .+.. +....++|++|.++++....+.... ++|+.+++...
T Consensus 125 L~Ls~N~l~~l--p~---~l~~L~~L~Ls-~N---~l~~----lp~~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 125 LDVDNNQLTML--PE---LPALLEYINAD-NN---QLTM----LPELPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTN 190 (571)
T ss_dssp EECCSSCCSCC--CC---CCTTCCEEECC-SS---CCSC----CCCCCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSS
T ss_pred EECCCCcCCCC--CC---cCccccEEeCC-CC---ccCc----CCCcCCCcCEEECCCCCCCCcchhh-CCCCEEECcCC
Confidence 99999755444 22 56889999998 76 3321 1115689999999887644332211 67888777554
Q ss_pred ecccccCCchhhhhhhcccccccEEEEeccceeEee----ecccccccc
Q 041388 288 HAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE----LHRNGGRTD 332 (440)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~----~f~~L~~L~ 332 (440)
.... .... . ..+....+.++.|.++.+.+..++ .+++|+.|+
T Consensus 191 ~L~~-lp~~-~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 191 LLES-LPAV-P-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236 (571)
T ss_dssp CCSS-CCCC-C---------CCEEEECCSSCCCCCCGGGGGSCTTEEEE
T ss_pred CCCc-hhhH-H-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEE
Confidence 3321 0000 0 011111223399999888777766 344444444
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.25 E-value=0.00015 Score=64.40 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=49.6
Q ss_pred eecCccccccccccEEEecCCccccCC-C-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVP-S-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
..+|..+. ++|++|+|.+ ..+... + ....+++|+.|+|. ..+. ..-...+..++.|+.|+|.++....+. .
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~ 105 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLDLGTNQLTVLP-S 105 (229)
T ss_dssp SSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred CccCCCCC--CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEECCCCcCCccC-h
Confidence 44555433 6788888884 333332 2 34567788888888 6664 112344567788888888776432220 0
Q ss_pred cEEecccccceeEEEeec
Q 041388 222 NLIISSATLKTCKLIVRS 239 (440)
Q Consensus 222 ~l~i~~~~L~~L~i~~~~ 239 (440)
..--..++|+.|.+. ++
T Consensus 106 ~~~~~l~~L~~L~Ls-~N 122 (229)
T 3e6j_A 106 AVFDRLVHLKELFMC-CN 122 (229)
T ss_dssp TTTTTCTTCCEEECC-SS
T ss_pred hHhCcchhhCeEecc-CC
Confidence 000123567777776 54
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.25 E-value=0.00012 Score=71.78 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=35.3
Q ss_pred CccCCCCChHHHHHHhcCCCchhhhhhhccccchHHH
Q 041388 24 ADRISSLPDSVLCHILSYIPTKHVVATSVIAKRWKNV 60 (440)
Q Consensus 24 ~D~is~LPd~lL~~Ils~L~~~d~~rts~lsrrWr~l 60 (440)
.|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 6899999999999999999999999999999999963
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.23 E-value=0.00046 Score=69.92 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=106.8
Q ss_pred ceeeEEEEeeCCCC-hhhHHHHHHHHHcCCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccc
Q 041388 103 KIGKFSLYCSRPTN-LARFYDWIATALMREVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVK 181 (440)
Q Consensus 103 ~v~~l~l~~~~~~~-~~~~~~wi~~~~~~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~ 181 (440)
.++.+.+....-.. +..+ ..+++.|++..+. ...+| ..+++|++|+|++ ..+...+. -..+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--------~~~L~~L~Ls~N~--l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--------PPQITVLEITQNA--LISLP---ELPASLEYLDACD-NRLSTLPE--LPASLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--------CTTCSEEECCSSC--CSCCC---CCCTTCCEEECCS-SCCSCCCC--CCTTCC
T ss_pred CccEEEeCCCCCCccCHhH--------cCCCCEEECcCCC--Ccccc---cccCCCCEEEccC-CCCCCcch--hhcCCC
Confidence 47777776543222 1111 2478999886432 23566 3478999999994 45544442 122899
Q ss_pred eEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceE
Q 041388 182 ILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLES 260 (440)
Q Consensus 182 ~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~ 260 (440)
.|+|. ..+. . +.. .++.|+.|+|.++....+ .. ..++|+.|.+. +| .+.. ... +. ++|++
T Consensus 124 ~L~Ls~N~l~-~--lp~---~l~~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls-~N---~L~~-lp~--l~-~~L~~ 184 (571)
T 3cvr_A 124 HLDVDNNQLT-M--LPE---LPALLEYINADNNQLTML--PE---LPTSLEVLSVR-NN---QLTF-LPE--LP-ESLEA 184 (571)
T ss_dssp EEECCSSCCS-C--CCC---CCTTCCEEECCSSCCSCC--CC---CCTTCCEEECC-SS---CCSC-CCC--CC-TTCCE
T ss_pred EEECCCCcCC-C--CCC---cCccccEEeCCCCccCcC--CC---cCCCcCEEECC-CC---CCCC-cch--hh-CCCCE
Confidence 99999 8776 2 322 689999999999754333 22 45799999998 77 3322 112 22 89999
Q ss_pred EEEeccccccEEeeCCCCe-------eEEEEEEeecccccCCchhhhhhhcccccccEEEEecccee
Q 041388 261 LEIYSDLLGSFVMHDLHSL-------KIVKLDIMHAEWAQVDPYRAIQLLAGINSCKYLYLSAGIMS 320 (440)
Q Consensus 261 L~~~~~~~~~~~~~~~~~L-------~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~ 320 (440)
|.++++....+.. -.++| +.+++...... ..+ .. +..+++++.|.|+.+.+.
T Consensus 185 L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~---~lp---~~-l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 185 LDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRIT---HIP---EN-ILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EECCSSCCSSCCC-CC--------CCEEEECCSSCCC---CCC---GG-GGGSCTTEEEECCSSSCC
T ss_pred EECcCCCCCchhh-HHHhhhcccccceEEecCCCcce---ecC---HH-HhcCCCCCEEEeeCCcCC
Confidence 9999876543322 11144 55555433221 111 22 334889999999888654
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.17 E-value=8.1e-05 Score=76.40 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=24.2
Q ss_pred cccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 154 AACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+++|++|+|++ ..+.. ++ .+.++++|++|+|. ..+. ..-...+.+++.|++|+|.++
T Consensus 75 l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~--~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 75 FPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ--SLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC--EECGGGGTTCTTCCEEECTTS
T ss_pred CCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCC--CCCHHHhcCCCCCCEEECCCC
Confidence 55555555552 22221 11 23344555555555 4433 111223444555555555554
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.16 E-value=0.00016 Score=63.10 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=48.3
Q ss_pred eecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
..+|..+ .++|++|+|.+ ..+...+ ....+++|++|+|. ..+. ......+..++.|++|+|.++....+. .
T Consensus 20 ~~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 93 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLP-N 93 (208)
T ss_dssp SSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred cCCCCCC--CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccC-H
Confidence 3445433 34778888883 3443332 23467788888887 6655 222344567788888888776432220 0
Q ss_pred cEEecccccceeEEEeec
Q 041388 222 NLIISSATLKTCKLIVRS 239 (440)
Q Consensus 222 ~l~i~~~~L~~L~i~~~~ 239 (440)
..--..++|+.|.+. ++
T Consensus 94 ~~~~~l~~L~~L~L~-~N 110 (208)
T 2o6s_A 94 GVFDKLTQLKELALN-TN 110 (208)
T ss_dssp TTTTTCTTCCEEECC-SS
T ss_pred hHhcCccCCCEEEcC-CC
Confidence 000123567777666 44
No 117
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.15 E-value=6.3e-05 Score=73.54 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=34.7
Q ss_pred CccCCCCChH----HHHHHhcCCCchhhhhhhccccchHH
Q 041388 24 ADRISSLPDS----VLCHILSYIPTKHVVATSVIAKRWKN 59 (440)
Q Consensus 24 ~D~is~LPd~----lL~~Ils~L~~~d~~rts~lsrrWr~ 59 (440)
.|.|+.||+| |+.+||+||+++++++++.|||+|++
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 6999999999 99999999999999999999999995
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.13 E-value=1.3e-05 Score=69.69 Aligned_cols=86 Identities=22% Similarity=0.167 Sum_probs=54.2
Q ss_pred eecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL 223 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l 223 (440)
..+|..+..+++|++|+|. ...+...+....+++|+.|+|. ..+. + +...+..+|.|+.|++.++....+ .
T Consensus 38 ~~l~~~~~~l~~L~~L~ls-~n~l~~l~~~~~l~~L~~L~l~~n~l~-~--l~~~~~~~~~L~~L~L~~N~l~~l--~-- 109 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALS-TNNIEKISSLSGMENLRILSLGRNLIK-K--IENLDAVADTLEELWISYNQIASL--S-- 109 (198)
T ss_dssp CCCHHHHHHTTTCSEEECS-EEEESCCCCHHHHTTCCEEEEEEEEEC-S--CSSHHHHHHHCSEEEEEEEECCCH--H--
T ss_pred hhhhHHHhcCCCCCEEECC-CCCCccccccccCCCCCEEECCCCCcc-c--ccchhhcCCcCCEEECcCCcCCcC--C--
Confidence 3444466667888888887 4445444445667888888888 7776 2 344556678888888888754222 1
Q ss_pred Ee-cccccceeEEEeec
Q 041388 224 II-SSATLKTCKLIVRS 239 (440)
Q Consensus 224 ~i-~~~~L~~L~i~~~~ 239 (440)
.+ ..++|+.|.+. ++
T Consensus 110 ~~~~l~~L~~L~l~-~N 125 (198)
T 1ds9_A 110 GIEKLVNLRVLYMS-NN 125 (198)
T ss_dssp HHHHHHHSSEEEES-EE
T ss_pred ccccCCCCCEEECC-CC
Confidence 11 23667777776 55
No 119
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.11 E-value=0.00017 Score=60.92 Aligned_cols=82 Identities=7% Similarity=-0.140 Sum_probs=59.2
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--Cccc----ccccceEEEE-EE-eCCCcchhhhhccC
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTC----FPCVKILSVR-LE-NPNKSVTENLFCSC 202 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~L~-~~-~~~~~~l~~lls~c 202 (440)
.+++|++..+.- ...--..+..|++|++|+|++|..+++.. .... .++|++|+|+ |. ++ |.++..+ +.|
T Consensus 62 ~L~~LDLs~~~I-td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L-~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCI-MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL-HHF 138 (176)
T ss_dssp CEEEEEEESCCC-CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG-GGC
T ss_pred eEeEEeCcCCCc-cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH-hcC
Confidence 588888875431 12222335579999999999766676643 1112 3589999999 86 66 8888875 579
Q ss_pred CCcceEEEeeeeC
Q 041388 203 PSLEELSVTCELH 215 (440)
Q Consensus 203 p~Le~L~L~~c~~ 215 (440)
|.|+.|.|.+|..
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999999953
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.07 E-value=2.8e-05 Score=64.06 Aligned_cols=79 Identities=15% Similarity=0.060 Sum_probs=50.5
Q ss_pred cccccEEEecCCcccc--C-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388 154 AACLKVLTLDSDFSIQ--V-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT 229 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~--~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~ 229 (440)
.++|+.|++. +..+. . ++....+++|+.|+|. +.+. +. ..+..++.|+.|++.++...... ....-..++
T Consensus 16 ~~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLD-NSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI---ANLPKLNKLKKLELSDNRVSGGL-EVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECT-TCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC---TTCCCCTTCCEEECCSSCCCSCT-HHHHHHCTT
T ss_pred CccCeEEEcc-CCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc---hhhhcCCCCCEEECCCCcccchH-HHHhhhCCC
Confidence 4678999999 44554 3 3334678889999988 7776 22 55677888999988887542210 111112466
Q ss_pred cceeEEEeec
Q 041388 230 LKTCKLIVRS 239 (440)
Q Consensus 230 L~~L~i~~~~ 239 (440)
|+.|.+. +|
T Consensus 90 L~~L~ls-~N 98 (149)
T 2je0_A 90 LTHLNLS-GN 98 (149)
T ss_dssp CCEEECT-TS
T ss_pred CCEEECC-CC
Confidence 7777776 55
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.03 E-value=0.00074 Score=64.05 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=50.0
Q ss_pred eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388 144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP 220 (440)
Q Consensus 144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~ 220 (440)
...+|..+ .+++++|+|.++ .+.. ++ .+.++++|++|+|+ ..+. +..=...+.+++.|+++.+..+. .+
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N--~l-- 92 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKAN--NL-- 92 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEET--TC--
T ss_pred CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCC--cc--
Confidence 34566554 357888888843 3433 32 35678888888888 6553 11112345677777776665542 12
Q ss_pred CcEE----ecccccceeEEEeec
Q 041388 221 PNLI----ISSATLKTCKLIVRS 239 (440)
Q Consensus 221 ~~l~----i~~~~L~~L~i~~~~ 239 (440)
..+. -..++|+.|.+. ++
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~-~n 114 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLIS-NT 114 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEE-EE
T ss_pred cccCchhhhhcccccccccc-cc
Confidence 2221 123678888887 65
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.91 E-value=0.00047 Score=68.00 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=100.9
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELS 209 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~ 209 (440)
.++.|++..+. ...+| .+..+++|++|++. ...+...+ ...++|+.|++. +.+. . +.. +..++.|++|+
T Consensus 174 ~L~~L~L~~n~--l~~l~-~~~~l~~L~~L~l~-~N~l~~l~--~~~~~L~~L~l~~n~l~-~--lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 174 SLEFIAAGNNQ--LEELP-ELQNLPFLTAIYAD-NNSLKKLP--DLPLSLESIVAGNNILE-E--LPE-LQNLPFLTTIY 243 (454)
T ss_dssp TCCEEECCSSC--CSSCC-CCTTCTTCCEEECC-SSCCSSCC--CCCTTCCEEECCSSCCS-S--CCC-CTTCTTCCEEE
T ss_pred cccEEECcCCc--CCcCc-cccCCCCCCEEECC-CCcCCcCC--CCcCcccEEECcCCcCC-c--ccc-cCCCCCCCEEE
Confidence 67777665332 22355 46679999999999 44444433 123689999999 7765 2 222 66899999999
Q ss_pred EeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEeec
Q 041388 210 VTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMHA 289 (440)
Q Consensus 210 L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~ 289 (440)
+.++....+ . -..++|+.|.+. +| .+. .+....++|++|.++++....+. .-.++|+.+++.....
T Consensus 244 l~~N~l~~l--~---~~~~~L~~L~l~-~N---~l~----~l~~~~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 244 ADNNLLKTL--P---DLPPSLEALNVR-DN---YLT----DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEI 309 (454)
T ss_dssp CCSSCCSSC--C---SCCTTCCEEECC-SS---CCS----CCCCCCTTCCEEECCSSCCSEES-CCCTTCCEEECCSSCC
T ss_pred CCCCcCCcc--c---ccccccCEEECC-CC---ccc----ccCcccCcCCEEECcCCccCccc-CcCCcCCEEECcCCcC
Confidence 998754333 1 123789999988 66 231 12122478888888876543321 1125677666643322
Q ss_pred ccccCCchhhhhhhccc-ccccEEEEeccceeEee-ecccccccc
Q 041388 290 EWAQVDPYRAIQLLAGI-NSCKYLYLSAGIMSSVE-LHRNGGRTD 332 (440)
Q Consensus 290 ~~~~~~~~~~~~~l~~~-~~l~~L~l~~~~~~~~~-~f~~L~~L~ 332 (440)
. . +..+ ++++.|.++.+.+..++ .+.+|+.|+
T Consensus 310 ~----------~-i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~ 343 (454)
T 1jl5_A 310 R----------S-LCDLPPSLEELNVSNNKLIELPALPPRLERLI 343 (454)
T ss_dssp S----------E-ECCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred C----------c-ccCCcCcCCEEECCCCccccccccCCcCCEEE
Confidence 1 1 1122 47778887776655544 456666666
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.87 E-value=0.00041 Score=60.46 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=49.5
Q ss_pred CcEEEEEEEccCceeecCcccc-ccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELPEAIY-SAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
+++.|++.... ...+|...+ .+++|++|+|.+ ..+...+ ....+++|++|+|. ..+. ......+..++.|+
T Consensus 29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred CCcEEEcCCCc--cCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCC--ccCHhHhcCccCCC
Confidence 44555543221 123444333 467777777773 3333322 13456677777777 5554 11223455667777
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLIVRS 239 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~ 239 (440)
.|++.++....+. ...--..++|+.|.+. ++
T Consensus 104 ~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~-~N 134 (208)
T 2o6s_A 104 ELALNTNQLQSLP-DGVFDKLTQLKDLRLY-QN 134 (208)
T ss_dssp EEECCSSCCCCCC-TTTTTTCTTCCEEECC-SS
T ss_pred EEEcCCCcCcccC-HhHhccCCcCCEEECC-CC
Confidence 7777665332220 0000123556666665 44
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.82 E-value=0.0006 Score=60.12 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=29.9
Q ss_pred cccEEEecCCccccCC-C--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeee
Q 041388 156 CLKVLTLDSDFSIQVP-S--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCEL 214 (440)
Q Consensus 156 ~L~~L~L~~~~~l~~~-~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~ 214 (440)
.+++|+|.++ .+... + ....+++|+.|+|. ..+. ......+.+++.|++|+|.++.
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCc
Confidence 4566777633 23221 1 23456677777776 5544 1112345566777777776653
No 125
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.81 E-value=0.0013 Score=67.29 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=82.7
Q ss_pred eeecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCC
Q 041388 144 RVELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPP 221 (440)
Q Consensus 144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~ 221 (440)
...+|..+. +++++|+|+++..-..++ .+.++++|++|+|. +.+. ..-...+.+++.|++|+|.++.. .
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--~i~~~~f~~L~~L~~L~Ls~N~l-----~ 113 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPI-----Q 113 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCC-----C
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--CcChhHhcCCCCCCEEEccCCcC-----C
Confidence 345565432 478999999543323333 46789999999999 7765 11133567899999999998743 3
Q ss_pred cEEe----cccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccE----EeeCCCCeeEEEEEEe
Q 041388 222 NLII----SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSF----VMHDLHSLKIVKLDIM 287 (440)
Q Consensus 222 ~l~i----~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~----~~~~~~~L~~~~i~~~ 287 (440)
.+.. ..++|+.|.+. +| .+.......--..++|++|.++++..... .+.++++|+.+++...
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls-~N---~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAV-ET---NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECGGGGTTCTTCCEEECT-TS---CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCHHHhcCCCCCCEEECC-CC---cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 3221 24789999998 76 23211111112368999999988654332 2356778888777543
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.79 E-value=0.00011 Score=62.43 Aligned_cols=81 Identities=17% Similarity=0.026 Sum_probs=42.7
Q ss_pred cccccccEEEecCCccccCCCCcccc-cccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccc
Q 041388 152 YSAACLKVLTLDSDFSIQVPSSGTCF-PCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSAT 229 (440)
Q Consensus 152 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~ 229 (440)
..+.+|+.|+|. +..+...+....+ ++|+.|+|. ..+. + + ..+..++.|+.|.+.++....+. ..+.-..++
T Consensus 16 ~~~~~L~~L~l~-~n~l~~i~~~~~~~~~L~~L~Ls~N~l~-~--~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 16 TNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-K--L-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD 89 (176)
T ss_dssp ECTTSCEEEECT-TSCCCSCCCGGGGTTCCSEEECCSSCCC-E--E-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred CCcCCceEEEee-CCCCchhHHhhhcCCCCCEEECCCCCCC-c--c-cccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence 346677777777 3344443323333 377777777 6555 2 1 34556777777777775321110 000012356
Q ss_pred cceeEEEeec
Q 041388 230 LKTCKLIVRS 239 (440)
Q Consensus 230 L~~L~i~~~~ 239 (440)
|+.|.+. ++
T Consensus 90 L~~L~L~-~N 98 (176)
T 1a9n_A 90 LTELILT-NN 98 (176)
T ss_dssp CCEEECC-SC
T ss_pred CCEEECC-CC
Confidence 6666666 54
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.75 E-value=0.00052 Score=60.92 Aligned_cols=102 Identities=13% Similarity=0.027 Sum_probs=59.4
Q ss_pred ccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccceeEE
Q 041388 157 LKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLKTCKL 235 (440)
Q Consensus 157 L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~~L~i 235 (440)
.+.++.. ...+...| ..-.++|+.|+|. ..+. ......+..++.|+.|.|.++....+. ...--..++|+.|.+
T Consensus 21 ~~~v~c~-~~~l~~ip-~~~~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCR-SKRHASVP-AGIPTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECT-TSCCSSCC-SCCCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CCEeEcc-CCCcCccC-CCCCCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEEC
Confidence 4557776 55555555 3334899999999 8776 222455678999999999997542221 010113467888888
Q ss_pred EeecccccccccccEEEEecCCceEEEEeccc
Q 041388 236 IVRSEDMLFREVDYMLTITAPKLESLEIYSDL 267 (440)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~ 267 (440)
. ++ .+.......--..++|++|.++++.
T Consensus 96 s-~N---~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 96 G-TN---QLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp C-SS---CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CC---cCCccChhHhCcchhhCeEeccCCc
Confidence 7 65 2211000001135677777776653
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.74 E-value=0.00043 Score=61.03 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=54.8
Q ss_pred ccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEeccc
Q 041388 151 IYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSA 228 (440)
Q Consensus 151 l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~ 228 (440)
+..+++|++|+|.++..-..++ ....+++|++|+|. ..+. ......+..++.|++|.|.++....+.+.. --..+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC--ccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCc
Confidence 4458899999999443222232 46678899999999 7776 223455778999999999886432220010 01236
Q ss_pred ccceeEEEeec
Q 041388 229 TLKTCKLIVRS 239 (440)
Q Consensus 229 ~L~~L~i~~~~ 239 (440)
+|+.|.+. ++
T Consensus 130 ~L~~L~L~-~N 139 (220)
T 2v70_A 130 SVRLLSLY-DN 139 (220)
T ss_dssp TCSEEECT-TS
T ss_pred cCCEEECC-CC
Confidence 77778776 55
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.72 E-value=0.00026 Score=60.03 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=60.8
Q ss_pred CcEEEEEEEccCceeecCcccccc-ccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSA-ACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~-~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
++++|++..+. ...+|. +..+ ++|++|+|++ ..+...+....+++|++|+|. ..+. . .-..++..+|.|+.|
T Consensus 20 ~L~~L~l~~n~--l~~i~~-~~~~~~~L~~L~Ls~-N~l~~~~~l~~l~~L~~L~Ls~N~l~-~-~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRGYK--IPVIEN-LGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRIC-R-IGEGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTTSC--CCSCCC-GGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSCCC-E-ECSCHHHHCTTCCEE
T ss_pred CceEEEeeCCC--CchhHH-hhhcCCCCCEEECCC-CCCCcccccccCCCCCEEECCCCccc-c-cCcchhhcCCCCCEE
Confidence 56666664321 223443 4444 4899999984 344433446678889999998 7765 2 123445788999999
Q ss_pred EEeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388 209 SVTCELHDDTPPPNL-II-SSATLKTCKLIVRS 239 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~ 239 (440)
+|.++....+ ..+ .+ ..++|+.|.+. ++
T Consensus 94 ~L~~N~i~~~--~~~~~l~~l~~L~~L~l~-~N 123 (176)
T 1a9n_A 94 ILTNNSLVEL--GDLDPLASLKSLTYLCIL-RN 123 (176)
T ss_dssp ECCSCCCCCG--GGGGGGGGCTTCCEEECC-SS
T ss_pred ECCCCcCCcc--hhhHhhhcCCCCCEEEec-CC
Confidence 9988754322 211 11 34677777777 65
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.67 E-value=0.00059 Score=60.17 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=59.3
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
++++|++... ....+|. .+..+++|++|+|+++..-.. +..+.++++|++|+|. ..+. ..-..++.+++.|+.
T Consensus 33 ~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCE
T ss_pred CCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC--ccCHhHccCCCCCCE
Confidence 5666665432 1233444 334478888888884332222 2345677888888888 7665 222345667888888
Q ss_pred EEEeeeeCCCCCCCcEEe-cccccceeEEEeec
Q 041388 208 LSVTCELHDDTPPPNLII-SSATLKTCKLIVRS 239 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l~i-~~~~L~~L~i~~~~ 239 (440)
|.|.++....+ ..-.+ ..++|+.|.+. ++
T Consensus 109 L~L~~N~l~~~--~~~~~~~l~~L~~L~L~-~N 138 (220)
T 2v9t_B 109 LLLNANKINCL--RVDAFQDLHNLNLLSLY-DN 138 (220)
T ss_dssp EECCSSCCCCC--CTTTTTTCTTCCEEECC-SS
T ss_pred EECCCCCCCEe--CHHHcCCCCCCCEEECC-CC
Confidence 88888643222 10011 23677777776 55
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.67 E-value=0.0011 Score=65.25 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=94.8
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.|++..+. ...+| .+..+++|++|++++ ..+...+ ..+++|++|++. ..+. . +.. +..++.|+.|
T Consensus 131 ~~L~~L~L~~n~--l~~lp-~~~~l~~L~~L~l~~-N~l~~lp--~~~~~L~~L~L~~n~l~-~--l~~-~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQ--LEKLP-ELQNSSFLKIIDVDN-NSLKKLP--DLPPSLEFIAAGNNQLE-E--LPE-LQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSC--CSSCC-CCTTCTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSSCCS-S--CCC-CTTCTTCCEE
T ss_pred CCCCEEECcCCC--CCCCc-ccCCCCCCCEEECCC-CcCcccC--CCcccccEEECcCCcCC-c--Ccc-ccCCCCCCEE
Confidence 366777664322 22355 356677888888873 3443332 123578888888 7665 2 222 5678888888
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeecccccccccccEEEEecCCceEEEEeccccccEEeeCCCCeeEEEEEEee
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSDLLGSFVMHDLHSLKIVKLDIMH 288 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~ 288 (440)
.+.++....+ .-..++|+.|.+. +| .+.. ... ....++|++|.++++....+. ...++|+.+++....
T Consensus 201 ~l~~N~l~~l-----~~~~~~L~~L~l~-~n---~l~~-lp~-~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 201 YADNNSLKKL-----PDLPLSLESIVAG-NN---ILEE-LPE-LQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNY 268 (454)
T ss_dssp ECCSSCCSSC-----CCCCTTCCEEECC-SS---CCSS-CCC-CTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSC
T ss_pred ECCCCcCCcC-----CCCcCcccEEECc-CC---cCCc-ccc-cCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCc
Confidence 8887643222 1123578888887 66 2211 111 124678888888776543321 224677777664433
Q ss_pred cccccCCchhhhhhhcccccccEEEEeccceeEee-ecccccccc
Q 041388 289 AEWAQVDPYRAIQLLAGINSCKYLYLSAGIMSSVE-LHRNGGRTD 332 (440)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~l~~L~l~~~~~~~~~-~f~~L~~L~ 332 (440)
.. .+...+++++.|.++.+.+..+. ...+|+.|+
T Consensus 269 l~----------~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 269 LT----------DLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp CS----------CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred cc----------ccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 21 11123467777777766555443 223455444
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.44 E-value=0.00085 Score=57.70 Aligned_cols=87 Identities=20% Similarity=0.220 Sum_probs=48.0
Q ss_pred eecCccccccccccEEEecCCccccC-CC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQV-PS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP 220 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~ 220 (440)
..+|..++. +|++|.|.++ .+.. ++ ....+++|++|+|. ..+. ......+.+.+.|++|+|.++....+
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 93 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGENKIKEI-- 93 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSCCCCEE--
T ss_pred CcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCCCcCCcc--
Confidence 445554433 7788888743 3433 22 14567788888888 6665 22234456678888888877532111
Q ss_pred CcEEe-cccccceeEEEeec
Q 041388 221 PNLII-SSATLKTCKLIVRS 239 (440)
Q Consensus 221 ~~l~i-~~~~L~~L~i~~~~ 239 (440)
..-.+ ..++|+.|.+. ++
T Consensus 94 ~~~~~~~l~~L~~L~L~-~N 112 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLY-DN 112 (192)
T ss_dssp CSSSSTTCTTCCEEECC-SS
T ss_pred CHHHhcCCCCCCEEECC-CC
Confidence 00001 23566666666 44
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.37 E-value=0.00098 Score=57.41 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=29.7
Q ss_pred ccccEEEecCCccccCC-CCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 155 ACLKVLTLDSDFSIQVP-SSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~-~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
++|++|+|.+ ..+... .....+++|+.|+|. ..+. . .....+.+++.|++|+|.++
T Consensus 31 ~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~-i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRIS-T-LSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCC-E-eCHhHccCCCCCCEEECCCC
Confidence 4566666663 233332 234456666666666 5554 1 11233455666666666664
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.31 E-value=0.0015 Score=55.18 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=41.1
Q ss_pred ccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEecccccc
Q 041388 155 ACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLIISSATLK 231 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i~~~~L~ 231 (440)
++|++|+|.+ ..+...+ ....+++|++|+|. ..+. ......+..++.|+.|++.++....+. ...--..++|+
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcce--EeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccC
Confidence 5677777773 3333322 13456777777777 6554 112234456777777777765332220 00001235566
Q ss_pred eeEEEeec
Q 041388 232 TCKLIVRS 239 (440)
Q Consensus 232 ~L~i~~~~ 239 (440)
.|.+. ++
T Consensus 104 ~L~l~-~N 110 (177)
T 2o6r_A 104 ELALD-TN 110 (177)
T ss_dssp EEECC-SS
T ss_pred EEECc-CC
Confidence 66665 44
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.28 E-value=0.00042 Score=66.13 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=47.0
Q ss_pred eecCccccccccccEEEecCCccccC-CC-Ccc-cccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQV-PS-SGT-CFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP 220 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~-~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~ 220 (440)
..+|..+. +.++.|+|+++ .+.. ++ ... .+++|+.|+|. ..+. ......+..++.|+.|+|.++..
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l----- 100 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHL----- 100 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCC-----
T ss_pred CccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcC-----
Confidence 34555433 45778888843 3333 22 223 67788888888 6654 11123456778888888877532
Q ss_pred CcEEe----cccccceeEEEeec
Q 041388 221 PNLII----SSATLKTCKLIVRS 239 (440)
Q Consensus 221 ~~l~i----~~~~L~~L~i~~~~ 239 (440)
..+.. ..++|+.|.+. ++
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~-~N 122 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLY-NN 122 (361)
T ss_dssp CEECTTTTTTCTTCCEEECC-SS
T ss_pred CcCCHHHhCCCcCCCEEECC-CC
Confidence 22111 23567777776 54
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.18 E-value=9.5e-05 Score=70.97 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=22.9
Q ss_pred hhhcccccccEEEEeccceeEeeecccccccccccccchhHHHHHHHhccCCCccccc
Q 041388 301 QLLAGINSCKYLYLSAGIMSSVELHRNGGRTDRMASTANRAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 301 ~~l~~~~~l~~L~l~~~~~~~~~~f~~L~~L~~~~~~~~~~~~l~~lL~~~p~L~~L~ 358 (440)
..+...++++.|.|+.+.+. ......+...++.+|+|++|.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~-----------------~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAG-----------------DTAALALARAAREHPSLELLH 245 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCC-----------------HHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHhcCCCcCeEECCCCCCC-----------------HHHHHHHHHHHHhCCCCCEEe
Confidence 33455556666666554332 233345556666667777766
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.15 E-value=0.0017 Score=61.85 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=69.8
Q ss_pred CcEEEEEEEccCceeecCcccc--ccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 131 EVGEIQLYLGQQSRVELPEAIY--SAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
.++.|++... ....++...+ .+++|++|+|.++ .+.. ++ .+..+++|+.|+|. ..+. ......+..++.|
T Consensus 40 ~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTC
T ss_pred CCCEEECCCC--CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCC--cCCHHHhCCCcCC
Confidence 4555555322 2334444444 6788999999843 3333 32 35678889999998 7665 2223456778899
Q ss_pred ceEEEeeeeCCCCCCCcEE---e-cccccceeEEEeecccccccccccE-E--EEecCCceEEEEeccc
Q 041388 206 EELSVTCELHDDTPPPNLI---I-SSATLKTCKLIVRSEDMLFREVDYM-L--TITAPKLESLEIYSDL 267 (440)
Q Consensus 206 e~L~L~~c~~~~~~~~~l~---i-~~~~L~~L~i~~~~~~~~~~~~~~~-l--~~~~p~L~~L~~~~~~ 267 (440)
+.|.|.++.. ..+. + ..++|+.|.+. ++ .+...... + ....++|+.|.++++.
T Consensus 115 ~~L~L~~N~i-----~~~~~~~~~~l~~L~~L~L~-~N---~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 115 EVLLLYNNHI-----VVVDRNAFEDMAQLQKLYLS-QN---QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEEECCSSCC-----CEECTTTTTTCTTCCEEECC-SS---CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CEEECCCCcc-----cEECHHHhCCcccCCEEECC-CC---cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 9999888642 2211 1 23678888887 55 22110000 0 0235677777776653
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.59 E-value=0.0097 Score=51.03 Aligned_cols=79 Identities=20% Similarity=0.115 Sum_probs=55.3
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
++++|++.... ...+|..+..+++|+.|+|++ ..+...+ .+.++++|++|+|. ..+. . .....+.+++.|+.
T Consensus 32 ~l~~L~L~~n~--i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~-i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 32 DVTELYLDGNQ--FTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLR-C-IPPRTFDGLKSLRL 106 (193)
T ss_dssp TCCEEECCSSC--CCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-B-CCTTTTTTCTTCCE
T ss_pred CCCEEECCCCc--CchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccC-E-eCHHHhCCCCCCCE
Confidence 67777765322 346776677799999999994 4444332 35678999999999 7766 2 22344678899999
Q ss_pred EEEeeee
Q 041388 208 LSVTCEL 214 (440)
Q Consensus 208 L~L~~c~ 214 (440)
|.|.++.
T Consensus 107 L~L~~N~ 113 (193)
T 2wfh_A 107 LSLHGND 113 (193)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 9998864
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.59 E-value=0.0041 Score=63.03 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=31.8
Q ss_pred cCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 147 LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 147 lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
+|. +..+++|+.|+|+++.....|.....+++|+.|+|. ..+. . +. -+..++.|+.|.|.++
T Consensus 456 lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~--lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 456 LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-N--VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-C--CG-GGTTCSSCCEEECCSS
T ss_pred CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-C--Cc-ccCCCCCCcEEECCCC
Confidence 444 445666666666632222222234455666666666 5554 2 22 3455666666666654
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.52 E-value=0.0038 Score=53.51 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=59.4
Q ss_pred cEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe-cccccceeEE
Q 041388 158 KVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII-SSATLKTCKL 235 (440)
Q Consensus 158 ~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i-~~~~L~~L~i 235 (440)
++|++. ...+...| ..-+++|+.|.|. ..+. .-.-..++...+.|+.|+|.++....+ ..-.+ ..++|+.|.+
T Consensus 11 ~~l~~s-~~~l~~ip-~~~~~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIP-RDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECT-TSCCSSCC-SCCCTTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEEC
T ss_pred CEEEcC-CCCcCcCc-cCCCCCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEEC
Confidence 678888 55555555 2334589999999 8776 322233577899999999999743222 00011 2367888888
Q ss_pred EeecccccccccccEEE----EecCCceEEEEeccc
Q 041388 236 IVRSEDMLFREVDYMLT----ITAPKLESLEIYSDL 267 (440)
Q Consensus 236 ~~~~~~~~~~~~~~~l~----~~~p~L~~L~~~~~~ 267 (440)
. ++ .+ ..+. -..++|++|.++++.
T Consensus 86 s-~N---~l----~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 86 G-EN---KI----KEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp C-SC---CC----CEECSSSSTTCTTCCEEECCSSC
T ss_pred C-CC---cC----CccCHHHhcCCCCCCEEECCCCc
Confidence 7 65 22 1111 124677777776654
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.47 E-value=0.011 Score=49.66 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred CcEEEEEEEccCceeecCccc-cccccccEEEecCCccccCCC--CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELPEAI-YSAACLKVLTLDSDFSIQVPS--SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
++++|++.... ...+|... ..+++|++|+|++ ..+...+ ....+++|+.|+|. ..+. ......+..++.|+
T Consensus 29 ~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 29 SATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKLQ--SLPNGVFDKLTQLK 103 (177)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred CCcEEEeCCCc--ccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCCCcc--ccCHHHhhCCcccC
Confidence 56666664321 23455544 3588999999984 4444433 24578899999999 7766 22334567789999
Q ss_pred eEEEeeeeCCCCCCCcEEecccccceeEEE
Q 041388 207 ELSVTCELHDDTPPPNLIISSATLKTCKLI 236 (440)
Q Consensus 207 ~L~L~~c~~~~~~~~~l~i~~~~L~~L~i~ 236 (440)
.|++.++....+. ...--..++|+.|.+.
T Consensus 104 ~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 104 ELALDTNQLKSVP-DGIFDRLTSLQKIWLH 132 (177)
T ss_dssp EEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred EEECcCCcceEeC-HHHhcCCcccCEEEec
Confidence 9999886432221 0000123556666665
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.0058 Score=57.23 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=54.5
Q ss_pred cCCceEEEEecccccc---EEeeCCCCeeEEEEEEeecccccCCchhhhhhhccccccc-EEEEeccceeEee--ecccc
Q 041388 255 APKLESLEIYSDLLGS---FVMHDLHSLKIVKLDIMHAEWAQVDPYRAIQLLAGINSCK-YLYLSAGIMSSVE--LHRNG 328 (440)
Q Consensus 255 ~p~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~~~~~l~~~~~l~-~L~l~~~~~~~~~--~f~~L 328 (440)
+++|+++.+.++.... ..+.++++|+++.+..... ... ...+.++++++ .+.+.. .+..+. .|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~--~I~-----~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLK--TIG-----QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCC--EEC-----TTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccc--eeh-----HHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 6888888887643332 2356788888876632100 000 33457788888 888876 555555 56666
Q ss_pred cccc--cccccchhHHHH-HHHhccCCCccccc
Q 041388 329 GRTD--RMASTANRAKKL-TELGKSCPAQEQFG 358 (440)
Q Consensus 329 ~~L~--~~~~~~~~~~~l-~~lL~~~p~L~~L~ 358 (440)
..|+ .+. ......+ ...+..|++|+++.
T Consensus 297 ~~L~~l~l~--~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLAT--GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEEC--SSCCCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeC--CCccCccchhhhcCCcchhhhc
Confidence 6665 332 1111111 12566788888775
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.22 E-value=0.014 Score=49.05 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=34.4
Q ss_pred eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
..+|..+. ++|++|+|+++..-..++ ....+++|+.|+|. ..+. . .-..++..++.|+.|+|.++
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A-IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C-CCTTTTTTCTTCCEEECCSS
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-c-cChhHhCCcchhhEEECCCC
Confidence 34554443 567777777332222222 24456667777777 5554 1 11233456667777777664
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.18 E-value=0.015 Score=48.70 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=33.8
Q ss_pred eecCccccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 145 VELPEAIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 145 ~~lp~~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
..+|..++ ++|++|+|.++..-..++ ....+++|++|+|. ..+. ..-...+...+.|+.|+|.+.
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--ccChhhccCCCCCCEEECCCC
Confidence 34454432 566677776332222222 24456667777776 5554 112233456666777766664
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.87 E-value=0.0042 Score=64.97 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=25.2
Q ss_pred ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeee
Q 041388 153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCE 213 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c 213 (440)
.+++|+.|+|+++.....++....+++|+.|+|. ..+. .+..-+..++.|+.|+|.++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTS
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCC
Confidence 3455555555522222222223344555555555 4443 12222344555555555554
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.82 E-value=0.013 Score=59.31 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=62.5
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.+++.|++..+. ...+|..+..+++|+.|+|++ ..+...|....+++|+.|+|. ..+. .......+..++.|+.|
T Consensus 463 ~~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNR--LRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSC--CCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccc--ccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEE
Confidence 378888885432 347899888999999999994 445444457789999999999 8877 32214567889999999
Q ss_pred EEeeeeC
Q 041388 209 SVTCELH 215 (440)
Q Consensus 209 ~L~~c~~ 215 (440)
.|.++..
T Consensus 539 ~L~~N~l 545 (567)
T 1dce_A 539 NLQGNSL 545 (567)
T ss_dssp ECTTSGG
T ss_pred EecCCcC
Confidence 9998743
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.44 E-value=0.0092 Score=62.41 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred CcEEEEEEEccCceeecCccccccccccEEEecCCccccC-CCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceE
Q 041388 131 EVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQV-PSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEEL 208 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L 208 (440)
.++.|++... ....+|..++.+++|++|+|+++ .+.. |.....+++|+.|+|+ ..+. .+..-+..++.|++|
T Consensus 225 ~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 225 LWHALDLSNL--QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT---SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCEEECTTS--CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS---SCCSSGGGGTTCSEE
T ss_pred CCcEEECCCC--CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC---ccChhhcCCCCCCEE
Confidence 5666666432 23478888889999999999944 4444 3346678999999999 7776 233446788999999
Q ss_pred EEeeeeCCCCCCCcEEecccccceeEEEeec
Q 041388 209 SVTCELHDDTPPPNLIISSATLKTCKLIVRS 239 (440)
Q Consensus 209 ~L~~c~~~~~~~~~l~i~~~~L~~L~i~~~~ 239 (440)
.|.++....++ .. --..++|+.|.+. ++
T Consensus 299 ~L~~N~l~~lp-~~-~~~l~~L~~L~L~-~N 326 (727)
T 4b8c_D 299 YFFDNMVTTLP-WE-FGNLCNLQFLGVE-GN 326 (727)
T ss_dssp ECCSSCCCCCC-SS-TTSCTTCCCEECT-TS
T ss_pred ECCCCCCCccC-hh-hhcCCCccEEeCC-CC
Confidence 99987543331 11 1124788889887 66
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=94.42 E-value=0.01 Score=50.97 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred CCcEEEEEEEccCceeecCccccccccccEEEecCCccccCCCC-cccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 130 REVGEIQLYLGQQSRVELPEAIYSAACLKVLTLDSDFSIQVPSS-GTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
..++.|++..+. ...+| .+..+++|++|+|+ ...+...+. ...+++|+.|+|. ..+. + +. -+..++.|+.
T Consensus 48 ~~L~~L~ls~n~--l~~l~-~~~~l~~L~~L~l~-~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~--l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 48 KACKHLALSTNN--IEKIS-SLSGMENLRILSLG-RNLIKKIENLDAVADTLEELWISYNQIA-S--LS-GIEKLVNLRV 119 (198)
T ss_dssp TTCSEEECSEEE--ESCCC-CHHHHTTCCEEEEE-EEEECSCSSHHHHHHHCSEEEEEEEECC-C--HH-HHHHHHHSSE
T ss_pred CCCCEEECCCCC--Ccccc-ccccCCCCCEEECC-CCCcccccchhhcCCcCCEEECcCCcCC-c--CC-ccccCCCCCE
Confidence 478888885432 23366 66779999999999 555555442 3356899999999 9887 3 33 3678899999
Q ss_pred EEEeeeeCCCCCCCcE-Ee-cccccceeEEEeec
Q 041388 208 LSVTCELHDDTPPPNL-II-SSATLKTCKLIVRS 239 (440)
Q Consensus 208 L~L~~c~~~~~~~~~l-~i-~~~~L~~L~i~~~~ 239 (440)
|++.++....+ ..+ .+ ..++|+.|.+. ++
T Consensus 120 L~l~~N~i~~~--~~~~~l~~l~~L~~L~l~-~N 150 (198)
T 1ds9_A 120 LYMSNNKITNW--GEIDKLAALDKLEDLLLA-GN 150 (198)
T ss_dssp EEESEEECCCH--HHHHHHTTTTTCSEEEEC-SC
T ss_pred EECCCCcCCch--hHHHHHhcCCCCCEEEec-CC
Confidence 99999865332 111 11 34789999998 76
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.15 E-value=0.019 Score=53.96 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=51.7
Q ss_pred eeecCccccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCC
Q 041388 144 RVELPEAIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPP 220 (440)
Q Consensus 144 ~~~lp~~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~ 220 (440)
...+|. +..+++|+.|+|.+.-.+.. ++ .+..+++|+.|+|. ..+. ......+..++.|+.|+|.+.....+.+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 345777 66678888888873123322 32 35567888888888 6665 2233456678888888888754322210
Q ss_pred CcEEecccccceeEEE
Q 041388 221 PNLIISSATLKTCKLI 236 (440)
Q Consensus 221 ~~l~i~~~~L~~L~i~ 236 (440)
.. ....+|+.|.+.
T Consensus 98 ~~--~~~~~L~~l~l~ 111 (347)
T 2ifg_A 98 KT--VQGLSLQELVLS 111 (347)
T ss_dssp TT--TCSCCCCEEECC
T ss_pred HH--cccCCceEEEee
Confidence 11 112237777776
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=92.87 E-value=0.0021 Score=61.50 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=29.2
Q ss_pred ccccEEEecCCccccCCC---CcccccccceEEEE-EEeCCCcchhh---hh-ccCCCcceEEEeeee
Q 041388 155 ACLKVLTLDSDFSIQVPS---SGTCFPCVKILSVR-LENPNKSVTEN---LF-CSCPSLEELSVTCEL 214 (440)
Q Consensus 155 ~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~L~-~~~~~~~~l~~---ll-s~cp~Le~L~L~~c~ 214 (440)
++|++|+|+ .+.+.+.. ....+++|++|+|. +.+. +.+... .+ ..++.|++|+|.+|.
T Consensus 101 ~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 101 HALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 466666666 33332211 12234566666666 6555 333222 22 346667777776663
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.80 E-value=0.095 Score=50.46 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=31.2
Q ss_pred cCccccccccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEee
Q 041388 147 LPEAIYSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVTC 212 (440)
Q Consensus 147 lp~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~~ 212 (440)
++...|...+|+.+.|..+...-....+.+ .+|+.+.|. +..-.+ ..+.+|+.|+.+.+..
T Consensus 127 I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 127 IPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSK 189 (401)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCTTCCEECS----STTTTCTTCCEEECTT
T ss_pred ehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCCCccEehH----HHhhCcccCCeeecCC
Confidence 334444433688888774422111111223 357776665 221112 2355788888888765
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.47 E-value=0.027 Score=47.82 Aligned_cols=55 Identities=20% Similarity=0.048 Sum_probs=28.1
Q ss_pred cccccEEEecCCccccCCC------CcccccccceEEEE-EEeCCCcc---hhhhhccCCCcceEEE
Q 041388 154 AACLKVLTLDSDFSIQVPS------SGTCFPCVKILSVR-LENPNKSV---TENLFCSCPSLEELSV 210 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~L~-~~~~~~~~---l~~lls~cp~Le~L~L 210 (440)
+++|++|+|+ ...+.+.. .....++|++|+|. +.+. +.+ +...+..++.|++|+|
T Consensus 64 ~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 64 NTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-GSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-HHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-HHHHHHHHHHHHhCCCceEEEe
Confidence 4556666666 33333211 01123556666666 6655 333 3444455666777777
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.43 E-value=0.13 Score=49.41 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=15.9
Q ss_pred hhcccccccEEEEeccceeEee--ecccccccc
Q 041388 302 LLAGINSCKYLYLSAGIMSSVE--LHRNGGRTD 332 (440)
Q Consensus 302 ~l~~~~~l~~L~l~~~~~~~~~--~f~~L~~L~ 332 (440)
.+.+|++|+.+.|.. .++.+. .|.++..|+
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 345666677666653 344444 454444444
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.08 E-value=0.13 Score=42.78 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=52.9
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccC-CC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcc
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQV-PS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLE 206 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le 206 (440)
.++.|++... ....++. .+...++|++|+|+++ .+.. ++ .+..+++|++|+|. ..+. ......+..++.|+
T Consensus 31 ~l~~L~L~~N--~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 31 TTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLK--SIPRGAFDNLKSLT 105 (170)
T ss_dssp TCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred CCcEEEcCCC--cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccC--EeCHHHhcCCCCCC
Confidence 6667666432 2334433 4556899999999954 4444 33 24678999999999 7776 22234567889999
Q ss_pred eEEEeee
Q 041388 207 ELSVTCE 213 (440)
Q Consensus 207 ~L~L~~c 213 (440)
.|.|.+.
T Consensus 106 ~L~L~~N 112 (170)
T 3g39_A 106 HIWLLNN 112 (170)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9999885
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.84 E-value=0.034 Score=53.42 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=26.6
Q ss_pred cccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEe
Q 041388 154 AACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVT 211 (440)
Q Consensus 154 ~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~ 211 (440)
|.+|+.+.+.+....-....+.++++|+.+.+. +..-.+ ..+..|+.|+.+.+.
T Consensus 161 c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~----~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 161 CESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRD----YCFAECILLENMEFP 216 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECT----TTTTTCTTCCBCCCC
T ss_pred cCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCc----hhhccccccceeecC
Confidence 667777776533221111224455666666665 222112 234456666666553
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=91.73 E-value=0.15 Score=42.61 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCcEEEEEEEccCceeecC-ccccccccccEEEecCCccccCCC-C-cccccccceEEEE-EEeCCCcchhhhhccCCCc
Q 041388 130 REVGEIQLYLGQQSRVELP-EAIYSAACLKVLTLDSDFSIQVPS-S-GTCFPCVKILSVR-LENPNKSVTENLFCSCPSL 205 (440)
Q Consensus 130 ~~l~~L~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~l~~~~-~-~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~L 205 (440)
.+++.|++.... ...++ ..+...++|++|+|+++ .+...+ . +..+++|++|+|. ..+. ..-...+..++.|
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLK--SIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccc--eeCHHHhccccCC
Confidence 367777775322 23443 34556899999999954 454433 2 3578999999999 7776 2223456788999
Q ss_pred ceEEEeeee
Q 041388 206 EELSVTCEL 214 (440)
Q Consensus 206 e~L~L~~c~ 214 (440)
+.|.|.+..
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999998853
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=87.87 E-value=0.46 Score=44.01 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=8.6
Q ss_pred ecCccccc-cccccEEEec
Q 041388 146 ELPEAIYS-AACLKVLTLD 163 (440)
Q Consensus 146 ~lp~~l~~-~~~L~~L~L~ 163 (440)
.+|...|. |.+|+.|.|.
T Consensus 240 ~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EECTTTTTTCTTCCEEECC
T ss_pred eecHhhhhCCCCCCEEECC
Confidence 34444433 5555555554
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=85.18 E-value=0.46 Score=44.29 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=44.3
Q ss_pred CcEEEEEEEccCceeecCc-cccccccccEEEecCCccccCCC-CcccccccceEEEE-EEeCCCcchhhhhccCCCcce
Q 041388 131 EVGEIQLYLGQQSRVELPE-AIYSAACLKVLTLDSDFSIQVPS-SGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEE 207 (440)
Q Consensus 131 ~l~~L~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~ 207 (440)
++++|+|... .....+|. .+..+++|+.|+|+++..-..++ .+..+++|+.|+|. ..+. . .-..++...+ |+.
T Consensus 32 ~L~~L~l~~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~-~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQ-QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S-LSWKTVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSC-SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-C-CCSTTTCSCC-CCE
T ss_pred CeeEEEccCC-CCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-e-eCHHHcccCC-ceE
Confidence 4666666421 11234453 34457888888888543333333 34567888888888 6665 1 1122233333 888
Q ss_pred EEEeee
Q 041388 208 LSVTCE 213 (440)
Q Consensus 208 L~L~~c 213 (440)
|.|.+.
T Consensus 108 l~l~~N 113 (347)
T 2ifg_A 108 LVLSGN 113 (347)
T ss_dssp EECCSS
T ss_pred EEeeCC
Confidence 888765
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=81.41 E-value=0.73 Score=38.72 Aligned_cols=111 Identities=8% Similarity=-0.033 Sum_probs=59.3
Q ss_pred hhhhcccccccEEEEecc-ceeEe-----e----ecccccccc-cccc-cchhHHHHHHHhccCCCccccc-cccC-C--
Q 041388 300 IQLLAGINSCKYLYLSAG-IMSSV-----E----LHRNGGRTD-RMAS-TANRAKKLTELGKSCPAQEQFG-WLES-D-- 363 (440)
Q Consensus 300 ~~~l~~~~~l~~L~l~~~-~~~~~-----~----~f~~L~~L~-~~~~-~~~~~~~l~~lL~~~p~L~~L~-~~~~-~-- 363 (440)
...+...++++.|.|+.. .+..- . ...+|++|+ ..+. .......+...++..++|++|. ..+. +
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555566666666554 33221 1 234455555 3220 1234456777888888999988 4221 1
Q ss_pred --CCCcccc--ccceeEEEE--EeeecCcchHHHHHHHHhhccccceEEEEee
Q 041388 364 --FDVPHCL--VHTVKNIEI--KGVQGDEDERPLLKYLLQFAAAMEKMLMWAK 410 (440)
Q Consensus 364 --~~~~~c~--~~~L~~v~i--~~~~~~~~~~~~~~~ll~~a~~L~~m~i~~~ 410 (440)
....+.+ ..+|+++.+ .+-.-.......+.-.++..+.|+.+.+...
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1111222 246999998 5333233333334445566788999998653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=77.99 E-value=0.49 Score=42.56 Aligned_cols=20 Identities=5% Similarity=0.155 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCCCceeeEEE
Q 041388 90 DFVHTVLLRTNPAKIGKFSL 109 (440)
Q Consensus 90 ~~v~~~L~~~~~~~v~~l~l 109 (440)
..+..++..|-.+.-+.+.+
T Consensus 115 ~~Lk~~l~~ryn~~~~~LdL 134 (267)
T 3rw6_A 115 EQLKLIMSKRYDGSQQALDL 134 (267)
T ss_dssp HHHHHHHHHTEETTTTEEEC
T ss_pred HHHHHHHHhccchhccccCH
Confidence 45566666654433444444
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=77.02 E-value=1.3 Score=39.72 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=33.0
Q ss_pred hhcccccccEEEEeccceeEee---ecc--cccccc-cccccch----hHHHHHHHhccCCCccccc
Q 041388 302 LLAGINSCKYLYLSAGIMSSVE---LHR--NGGRTD-RMASTAN----RAKKLTELGKSCPAQEQFG 358 (440)
Q Consensus 302 ~l~~~~~l~~L~l~~~~~~~~~---~f~--~L~~L~-~~~~~~~----~~~~l~~lL~~~p~L~~L~ 358 (440)
.+..+++|+.|.|+.+.+..+. .+. +|+.|. ....... .......++..+|+|+.|.
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3456677777777766655443 233 444444 2110011 1244567899999999997
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=58.08 E-value=11 Score=35.46 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=47.4
Q ss_pred ccccccEEEecCCccccCCCCcccccccceEEEE--EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE----e
Q 041388 153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI----I 225 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~----i 225 (440)
.|..|+.+.+......-....+.++.+|+.+.|. +. +. + ..+.+|..|+.+.|-.. + ..+. -
T Consensus 286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~-~----~aF~~C~~L~~i~ip~s----v--~~I~~~aF~ 354 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQIL-D----DAFAGCEQLERIAIPSS----V--TKIPESAFS 354 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC-T----TTTTTCTTCCEEEECTT----C--CBCCGGGGT
T ss_pred cccccccccCCCcccccCceeecCCCCcCEEEeCCcccEeh-H----hHhhCCCCCCEEEECcc----c--CEEhHhHhh
Confidence 4899999998744322222236678889999886 43 33 3 34668999999998432 2 2221 2
Q ss_pred cccccceeEEE
Q 041388 226 SSATLKTCKLI 236 (440)
Q Consensus 226 ~~~~L~~L~i~ 236 (440)
.+++|+.+.+.
T Consensus 355 ~C~~L~~i~~~ 365 (394)
T 4gt6_A 355 NCTALNNIEYS 365 (394)
T ss_dssp TCTTCCEEEES
T ss_pred CCCCCCEEEEC
Confidence 45789998886
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=42.45 E-value=19 Score=33.74 Aligned_cols=98 Identities=13% Similarity=0.216 Sum_probs=60.0
Q ss_pred ccccccEEEecCCccccCCCCcccccccceEEEE--EE-eCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE----e
Q 041388 153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LE-NPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI----I 225 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~-~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~----i 225 (440)
.|..|+.+.+......-....+..++.|+.+.+. +. +. + ..+.+|..|+.+.|-.- + ..+. -
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~-~----~aF~~c~~L~~i~lp~~----v--~~I~~~aF~ 331 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELP-E----SVFAGCISLKSIDIPEG----I--TQILDDAFA 331 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC-T----TTTTTCTTCCEEECCTT----C--CEECTTTTT
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccC-c----eeecCCCCcCEEEeCCc----c--cEehHhHhh
Confidence 4899999999743322112235678899999987 32 33 3 34678999999998541 2 2222 1
Q ss_pred cccccceeEEEeecccccccccccEEEEecCCceEEEEecc
Q 041388 226 SSATLKTCKLIVRSEDMLFREVDYMLTITAPKLESLEIYSD 266 (440)
Q Consensus 226 ~~~~L~~L~i~~~~~~~~~~~~~~~l~~~~p~L~~L~~~~~ 266 (440)
.+.+|+++.|- .. ...-....--.|++|+.+.+.+.
T Consensus 332 ~C~~L~~i~ip-~s----v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 GCEQLERIAIP-SS----VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEEC-TT----CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCCEEEEC-cc----cCEEhHhHhhCCCCCCEEEECCc
Confidence 35789998885 32 10000011124789999999764
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=41.30 E-value=15 Score=34.63 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=51.8
Q ss_pred cCcccc-ccccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcE
Q 041388 147 LPEAIY-SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNL 223 (440)
Q Consensus 147 lp~~l~-~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l 223 (440)
++...| .|.+|+.+.+......-....+.++.+|+++.|. +..-++ ..+.+|..|+.+.+-.. + ..+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~----l--~~I 357 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLS----L--RKI 357 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTT----C--CEE
T ss_pred eccccccccccccccccccccceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECcc----c--cEe
Confidence 444444 4999999999754433222336678899999987 332213 34668999999988542 2 222
Q ss_pred E----ecccccceeEEE
Q 041388 224 I----ISSATLKTCKLI 236 (440)
Q Consensus 224 ~----i~~~~L~~L~i~ 236 (440)
. -.+++|+.+.+.
T Consensus 358 ~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTTBTTCTTCCEEEEE
T ss_pred hHHHhhCCCCCCEEEEC
Confidence 1 245889999886
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=36.93 E-value=2.1 Score=36.43 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=30.6
Q ss_pred ccccccEEEecCCccccCCC------CcccccccceEEEE-EEeCCCcchh---hhhccCCCcceEEEeee
Q 041388 153 SAACLKVLTLDSDFSIQVPS------SGTCFPCVKILSVR-LENPNKSVTE---NLFCSCPSLEELSVTCE 213 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~L~-~~~~~~~~l~---~lls~cp~Le~L~L~~c 213 (440)
...+|+.|+|+ ...+.+.. ....-..|++|+|. ..+. +.+.. ..+..-..|++|.|.++
T Consensus 68 ~N~~L~~L~L~-~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLA-NTAISDSEARGLIELIETSPSLRVLNVESNFLT-PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECT-TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEcc-CCCCChHHHHHHHHHHhcCCccCeEecCCCcCC-HHHHHHHHHHHhhCCceeEEECCCC
Confidence 35567777777 44444321 01122456666666 6665 43333 33334455777776654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=25.55 E-value=43 Score=30.98 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=46.9
Q ss_pred cccccccEEEecCCccccCCCCcccccccceEEEE--EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEE----e
Q 041388 152 YSAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR--LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLI----I 225 (440)
Q Consensus 152 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~--~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~----i 225 (440)
+.|..|+.+.+-.....-....+..+.+|+.+.+. +... -...+.+|+.|+.+.+.+.. + ..+. .
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i----~~~aF~~c~~L~~i~l~~~~---i--~~I~~~aF~ 307 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTV----PYLLCSGCSNLTKVVMDNSA---I--ETLEPRVFM 307 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEE----CTTTTTTCTTCCEEEECCTT---C--CEECTTTTT
T ss_pred cCCccceEEEcCCCccEeCccccceeehhccccccccceec----cccccccccccccccccccc---c--ceehhhhhc
Confidence 45899999998744322112235667889988887 3221 12346789999999987631 2 2221 2
Q ss_pred cccccceeEEE
Q 041388 226 SSATLKTCKLI 236 (440)
Q Consensus 226 ~~~~L~~L~i~ 236 (440)
.+.+|+++.+-
T Consensus 308 ~c~~L~~i~lp 318 (379)
T 4h09_A 308 DCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEEcC
Confidence 35778888774
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=25.40 E-value=28 Score=32.33 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=44.7
Q ss_pred ccccccEEEecCCccccCCCCcccccccceEEEE-EEeCCCcchhhhhccCCCcceEEEeeeeCCCCCCCcEEe----cc
Q 041388 153 SAACLKVLTLDSDFSIQVPSSGTCFPCVKILSVR-LENPNKSVTENLFCSCPSLEELSVTCELHDDTPPPNLII----SS 227 (440)
Q Consensus 153 ~~~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~L~-~~~~~~~~l~~lls~cp~Le~L~L~~c~~~~~~~~~l~i----~~ 227 (440)
.|.+|+.+.+......-....+.++.+|+.+.+. ..+. .--...+.+|..|+.+.|-. .+ ..+.- .+
T Consensus 261 ~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~----~l--~~I~~~aF~~C 332 (379)
T 4h09_A 261 NCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPT----AL--KTIQVYAFKNC 332 (379)
T ss_dssp TCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCC--EECTTTTTTCTTCCEEECCT----TC--CEECTTTTTTC
T ss_pred eeehhccccccccceeccccccccccccccccccccccc--eehhhhhcCCCCCCEEEcCc----cc--cEEHHHHhhCC
Confidence 3888999988744332222236677889988886 2221 00123466899999998843 12 22221 34
Q ss_pred cccceeEEE
Q 041388 228 ATLKTCKLI 236 (440)
Q Consensus 228 ~~L~~L~i~ 236 (440)
.+|+++.+-
T Consensus 333 ~~L~~i~ip 341 (379)
T 4h09_A 333 KALSTISYP 341 (379)
T ss_dssp TTCCCCCCC
T ss_pred CCCCEEEEC
Confidence 677777664
Done!