BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041389
         (85 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
           C
          Length = 441

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 40  NSSATPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGL 81
           N+S TP++    +V+ C  +A GC  G+          D GL
Sbjct: 252 NNSQTPILSPQEVVS-CSQYAQGCEGGFPYLIAGKYAQDFGL 292


>pdb|2XG6|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
 pdb|2XG6|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
 pdb|2XG6|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
 pdb|2XG6|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
 pdb|2XG6|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
 pdb|2XG6|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance
          Length = 343

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 36 PESDNSSATPVVVLSTLVAICGSFAHGCSVG 66
          PESDNSS T V          GSF +G + G
Sbjct: 65 PESDNSSWTRVAFAGLKFQDVGSFDYGRNYG 95


>pdb|2XE5|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
 pdb|2XE5|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
 pdb|2XE5|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
 pdb|2XE5|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
 pdb|2XE5|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
 pdb|2XE5|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
          And Their Role In Multi-Drug Resistance (Ompc26)
          Length = 343

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 36 PESDNSSATPVVVLSTLVAICGSFAHGCSVG 66
          PESDNSS T V          GSF +G + G
Sbjct: 65 PESDNSSWTRVAFAGLKFQDVGSFDYGRNYG 95


>pdb|2XE3|A Chain A, Ompc28
 pdb|2XE3|B Chain B, Ompc28
          Length = 343

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 36 PESDNSSATPVVVLSTLVAICGSFAHGCSVG 66
          PESDNSS T V          GSF +G + G
Sbjct: 65 PESDNSSWTRVAFAGLKFQDVGSFDYGRNYG 95


>pdb|2XE2|A Chain A, Molecular Insights Into Clinically Isolated Ompc20
          Mutants And Their Role In Multi-Drug Resistance
 pdb|2XE2|B Chain B, Molecular Insights Into Clinically Isolated Ompc20
          Mutants And Their Role In Multi-Drug Resistance
 pdb|2XE2|C Chain C, Molecular Insights Into Clinically Isolated Ompc20
          Mutants And Their Role In Multi-Drug Resistance
          Length = 343

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 36 PESDNSSATPVVVLSTLVAICGSFAHGCSVG 66
          PESDNSS T V          GSF +G + G
Sbjct: 65 PESDNSSWTRVAFAGLKFQDVGSFDYGRNYG 95


>pdb|2JMR|A Chain A, Nmr Structure Of The E. Coli Type 1 Pilus Subunit Fimf
          Length = 179

 Score = 25.0 bits (53), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 42 SATPVVVLSTLVAICGSFAHGCSVGYSSAAES 73
          + TPVV    L++ CG+      VG++  A+S
Sbjct: 43 ATTPVVPFRILLSPCGNAVSAVKVGFTGVADS 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.124    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,278,801
Number of Sequences: 62578
Number of extensions: 69812
Number of successful extensions: 106
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 10
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)