Query 041389
Match_columns 85
No_of_seqs 107 out of 748
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0254 Predicted transporter 92.8 0.18 3.8E-06 39.8 4.2 36 44-79 40-77 (513)
2 KOG0569 Permease of the major 92.7 0.1 2.2E-06 42.5 2.8 36 41-77 4-39 (485)
3 PRK10077 xylE D-xylose transpo 91.8 0.18 3.9E-06 38.2 3.1 35 45-79 8-42 (479)
4 TIGR00879 SP MFS transporter, 81.7 1.6 3.4E-05 32.0 2.9 39 44-82 23-61 (481)
5 TIGR00887 2A0109 phosphate:H+ 76.3 1.9 4E-05 33.7 1.9 37 41-78 9-45 (502)
6 PRK11551 putative 3-hydroxyphe 72.6 2.1 4.5E-05 31.7 1.3 39 46-84 12-50 (406)
7 TIGR01299 synapt_SV2 synaptic 67.9 2.9 6.3E-05 35.7 1.4 41 44-84 162-202 (742)
8 TIGR00891 2A0112 putative sial 64.3 4.3 9.4E-05 29.3 1.5 41 45-85 8-48 (405)
9 PRK12307 putative sialic acid 50.1 11 0.00024 28.0 1.7 34 51-84 20-53 (426)
10 TIGR00885 fucP L-fucose:H+ sym 49.4 6 0.00013 30.4 0.2 30 55-84 9-38 (410)
11 PF00083 Sugar_tr: Sugar (and 43.4 3.5 7.6E-05 31.0 -1.9 26 51-76 2-27 (451)
12 PRK03545 putative arabinose tr 37.6 17 0.00036 27.0 1.0 31 54-84 14-44 (390)
13 PRK03893 putative sialic acid 36.9 24 0.00051 26.9 1.7 35 49-83 20-54 (496)
14 PRK15075 citrate-proton sympor 35.9 26 0.00056 26.6 1.8 34 51-84 17-50 (434)
15 TIGR00711 efflux_EmrB drug res 34.3 18 0.00039 27.3 0.7 33 52-84 5-37 (485)
16 PRK14995 methyl viologen resis 32.6 28 0.00061 27.2 1.6 36 49-84 6-41 (495)
17 TIGR00805 oat sodium-independe 32.0 41 0.00088 27.9 2.5 22 64-85 48-69 (633)
18 TIGR00895 2A0115 benzoate tran 30.9 24 0.00053 25.2 0.9 32 52-83 20-51 (398)
19 TIGR02332 HpaX 4-hydroxyphenyl 30.8 26 0.00056 26.6 1.1 30 55-84 14-43 (412)
20 PRK10133 L-fucose transporter; 28.4 34 0.00074 26.5 1.4 27 58-84 35-61 (438)
21 PRK02898 cobalt transport prot 27.8 44 0.00094 22.2 1.6 24 47-70 68-91 (100)
22 KOG0682 Ammonia permease [Inor 27.3 24 0.00051 29.5 0.3 32 44-75 67-99 (500)
23 PRK15086 ethanolamine utilizat 25.4 18 0.0004 29.1 -0.6 27 49-75 307-333 (372)
24 PRK10642 proline/glycine betai 25.0 47 0.001 25.8 1.6 31 51-81 18-48 (490)
25 PF04346 EutH: Ethanolamine ut 24.2 30 0.00066 27.6 0.4 27 49-75 305-331 (354)
26 PRK03699 putative transporter; 21.9 42 0.00091 25.0 0.8 32 53-84 11-42 (394)
27 TIGR01165 cbiN cobalt transpor 20.5 60 0.0013 21.3 1.2 22 47-68 68-89 (91)
No 1
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.82 E-value=0.18 Score=39.78 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHhhhhcccc--ccccchhhHHHHhhc
Q 041389 44 TPVVVLSTLVAICGSFAHGCS--VGYSSAAESGMRADL 79 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGyd--lGviSga~~~i~~dl 79 (85)
+..+.++++.+++++++|||+ .|+.+++..+++++.
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~ 77 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFA 77 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcc
Confidence 678899999999999999998 899999999988754
No 2
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=92.67 E-value=0.1 Score=42.54 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=31.1
Q ss_pred CCcchHHHHHHHHHHHhhhhccccccccchhhHHHHh
Q 041389 41 SSATPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRA 77 (85)
Q Consensus 41 ~~~t~~~~l~a~iAslgs~lfGydlGviSga~~~i~~ 77 (85)
.. +...++.++++++|+|.|||++++++++.+.+++
T Consensus 4 ~~-t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~ 39 (485)
T KOG0569|consen 4 KL-TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKS 39 (485)
T ss_pred Cc-cHHHHHHHHHHHHhchhhhhhheecCchHHHHHH
Confidence 44 7788888899999999999999999999877653
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=91.80 E-value=0.18 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhhhccccccccchhhHHHHhhc
Q 041389 45 PVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADL 79 (85)
Q Consensus 45 ~~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl 79 (85)
++.+.++++++++.+.+|||.++++++.+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVF 42 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHh
Confidence 46677888889999999999999999999888877
No 4
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=81.73 E-value=1.6 Score=31.98 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhhhhccccccccchhhHHHHhhcCCC
Q 041389 44 TPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLS 82 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS 82 (85)
.+..+..++++.++.++++++.++++++.+.+..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (481)
T TIGR00879 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFT 61 (481)
T ss_pred cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcC
Confidence 556667778888899999999999999999888877765
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=76.34 E-value=1.9 Score=33.67 Aligned_cols=37 Identities=11% Similarity=-0.087 Sum_probs=31.7
Q ss_pred CCcchHHHHHHHHHHHhhhhccccccccchhhHHHHhh
Q 041389 41 SSATPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRAD 78 (85)
Q Consensus 41 ~~~t~~~~l~a~iAslgs~lfGydlGviSga~~~i~~d 78 (85)
+. .++++.++++++++.+++|||.++++.+.+.+..+
T Consensus 9 ~~-~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~ 45 (502)
T TIGR00887 9 PF-GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYV 45 (502)
T ss_pred cc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 67888888999999999999999999999887654
No 6
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=72.58 E-value=2.1 Score=31.68 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 46 VVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 46 ~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
+.+...+++.+..++.|++....+.+.+.+.+++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 50 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVA 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 555566677777889999998899999999999988753
No 7
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=67.89 E-value=2.9 Score=35.68 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 44 TPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.++.+.+.++.+++.+..||+...++.+++.+..+++++..
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~ 202 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDS 202 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 35667777788888899999999999999999999988653
No 8
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=64.33 E-value=4.3 Score=29.34 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhhhccccccccchhhHHHHhhcCCCCCC
Q 041389 45 PVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVTE 85 (85)
Q Consensus 45 ~~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~q 85 (85)
++.+....++.++.++.+++....+...+.++++++++..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 48 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD 48 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 34444455666777888899999999999999999987653
No 9
>PRK12307 putative sialic acid transporter; Provisional
Probab=50.06 E-value=11 Score=27.99 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=27.4
Q ss_pred HHHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 51 TLVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 51 a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.+.+.++.+..+++...++.+.+.++++++++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 53 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDM 53 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHH
Confidence 3455666778889998999999999999998764
No 10
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=49.39 E-value=6 Score=30.39 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=25.1
Q ss_pred HHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 55 ICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 55 slgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
++..|++|+..+..++..+.++++++++..
T Consensus 9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~ 38 (410)
T TIGR00885 9 TSLFALWGFANDITNPMVPQFQQAFTLTAF 38 (410)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 345578888889999999999999998864
No 11
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=43.42 E-value=3.5 Score=31.01 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHhhhhccccccccchhhHHHH
Q 041389 51 TLVAICGSFAHGCSVGYSSAAESGMR 76 (85)
Q Consensus 51 a~iAslgs~lfGydlGviSga~~~i~ 76 (85)
+++++++++.+|||+++++.......
T Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~~ 27 (451)
T PF00083_consen 2 ALIASLGGFLFGYDLGLIGSFASLLG 27 (451)
T ss_pred EEeeHHHHHHHHHHHHHHhhHHhhhh
Confidence 35688899999999999988876544
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=37.58 E-value=17 Score=27.00 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=20.8
Q ss_pred HHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 54 AICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 54 Aslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.+++++++.+..-..++.++.+.++++++..
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~ 44 (390)
T PRK03545 14 LALAAFIFNTTEFVPVGLLSDIAQSFHMQTA 44 (390)
T ss_pred HHHHHHHHHhHHHHHHcchHHHHhHcCCCHH
Confidence 3444455555555666778889999998764
No 13
>PRK03893 putative sialic acid transporter; Provisional
Probab=36.91 E-value=24 Score=26.90 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhccccccccchhhHHHHhhcCCCC
Q 041389 49 LSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSV 83 (85)
Q Consensus 49 l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~ 83 (85)
.......++.++.+++.+..++..+.+.++++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 54 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTT 54 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33334445566777788888888899999998875
No 14
>PRK15075 citrate-proton symporter; Provisional
Probab=35.93 E-value=26 Score=26.61 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=28.5
Q ss_pred HHHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 51 TLVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 51 a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.....++.++..||....+.+.+.+.+++++++.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~ 50 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGN 50 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4455668889999999999999999999988764
No 15
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=34.32 E-value=18 Score=27.26 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=25.9
Q ss_pred HHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 52 LVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 52 ~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
+...++.++..++....+.+.+.+.++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~ 37 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLS 37 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 344556678888888999999999999988754
No 16
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=32.62 E-value=28 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 49 LSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 49 l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
...+..+++.|+...|...++.++|.+.++++.+..
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~ 41 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGN 41 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHh
Confidence 344566777788888999999999999999988653
No 17
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=31.95 E-value=41 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.5
Q ss_pred cccccchhhHHHHhhcCCCCCC
Q 041389 64 SVGYSSAAESGMRADLGLSVTE 85 (85)
Q Consensus 64 dlGviSga~~~i~~dl~LS~~q 85 (85)
..|+.+++++.++++|++++.+
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~ 69 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSS 69 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCc
Confidence 3489999999999999998764
No 18
>TIGR00895 2A0115 benzoate transport.
Probab=30.89 E-value=24 Score=25.20 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHhhhhccccccccchhhHHHHhhcCCCC
Q 041389 52 LVAICGSFAHGCSVGYSSAAESGMRADLGLSV 83 (85)
Q Consensus 52 ~iAslgs~lfGydlGviSga~~~i~~dl~LS~ 83 (85)
+.+.+..+..|++....+...+.+.++++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (398)
T TIGR00895 20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGLDP 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhccCCCH
Confidence 33444455667666677777888888888764
No 19
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=30.80 E-value=26 Score=26.61 Aligned_cols=30 Identities=27% Similarity=-0.011 Sum_probs=21.9
Q ss_pred HHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 55 ICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 55 slgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.++.++..+|....+.+.+.++++++++..
T Consensus 14 ~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~ 43 (412)
T TIGR02332 14 FILFIFSFLDRINIGFAGLTMGKDLGLSAT 43 (412)
T ss_pred HHHHHHHHhhhhhHHHHHHhhHhhcCCCHH
Confidence 334456677777777788889999998764
No 20
>PRK10133 L-fucose transporter; Provisional
Probab=28.41 E-value=34 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=21.4
Q ss_pred hhhccccccccchhhHHHHhhcCCCCC
Q 041389 58 SFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 58 s~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.|++|++.-..++..|.+++++++++.
T Consensus 35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~ 61 (438)
T PRK10133 35 FFLWAVANNLNDILLPQFQQAFTLTNF 61 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 367777777778888999999998764
No 21
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=27.77 E-value=44 Score=22.24 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhccccccccch
Q 041389 47 VVLSTLVAICGSFAHGCSVGYSSA 70 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGviSg 70 (85)
.++.++=|++|+...||-+||.-+
T Consensus 68 SLLFaLQAAiGAgiIgY~lG~~~g 91 (100)
T PRK02898 68 SLLFALQAALGAGIIGYILGYYKG 91 (100)
T ss_pred HHHHHHHHHHhhhhhheeeeehhh
Confidence 478889999999999999998755
No 22
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=27.30 E-value=24 Score=29.51 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHhhhhccccccccch-hhHHH
Q 041389 44 TPVVVLSTLVAICGSFAHGCSVGYSSA-AESGM 75 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGydlGviSg-a~~~i 75 (85)
.+..++.+++..+...+|||.+.+..+ ..+|+
T Consensus 67 m~~nvld~a~g~l~y~~~GyslAFg~~~~n~Fi 99 (500)
T KOG0682|consen 67 MLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGFI 99 (500)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeccCCCCCCce
Confidence 344566777788889999999999888 44554
No 23
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=25.38 E-value=18 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhccccccccchhhHHH
Q 041389 49 LSTLVAICGSFAHGCSVGYSSAAESGM 75 (85)
Q Consensus 49 l~a~iAslgs~lfGydlGviSga~~~i 75 (85)
.++.++.+++|.||=++|++++.+|.+
T Consensus 307 in~AFaVs~Afv~GdhLGFta~~~p~m 333 (372)
T PRK15086 307 INVAFAVSAAFVLGDHLGFTAGVQPTM 333 (372)
T ss_pred EeehhhhhHHHHhcccccccccCCcch
Confidence 455778899999999999999988764
No 24
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=25.01 E-value=47 Score=25.83 Aligned_cols=31 Identities=10% Similarity=-0.090 Sum_probs=25.7
Q ss_pred HHHHHHhhhhccccccccchhhHHHHhhcCC
Q 041389 51 TLVAICGSFAHGCSVGYSSAAESGMRADLGL 81 (85)
Q Consensus 51 a~iAslgs~lfGydlGviSga~~~i~~dl~L 81 (85)
.+++.+|.++.+||.++.+-+.+.+.+++..
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~ 48 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFP 48 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556778899999999999999999888753
No 25
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.24 E-value=30 Score=27.63 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhccccccccchhhHHH
Q 041389 49 LSTLVAICGSFAHGCSVGYSSAAESGM 75 (85)
Q Consensus 49 l~a~iAslgs~lfGydlGviSga~~~i 75 (85)
.++.++.+++|.||=++|++++.+|.+
T Consensus 305 in~AF~Vsaafv~GdhLgFta~~~p~m 331 (354)
T PF04346_consen 305 INVAFAVSAAFVFGDHLGFTAGVQPDM 331 (354)
T ss_pred ehhHHHHHHHHHhcchhhhhcccChhh
Confidence 455778888999999999999988765
No 26
>PRK03699 putative transporter; Provisional
Probab=21.89 E-value=42 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 53 VAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 53 iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.+.++.++.|++.-..+...+.+.+++++|..
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~ 42 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIAEYFNLPVS 42 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHH
Confidence 33445567777666666777888889888753
No 27
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.53 E-value=60 Score=21.26 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhcccccccc
Q 041389 47 VVLSTLVAICGSFAHGCSVGYS 68 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGvi 68 (85)
.++.++=|++|+...||-+|+.
T Consensus 68 SlLFaLQAaiGagiIgY~~G~~ 89 (91)
T TIGR01165 68 SLLFALQAALGALVIGYVIGYY 89 (91)
T ss_pred HHHHHHHHHhhheeeeEEEEEe
Confidence 4788899999999999999875
Done!