Query 041389
Match_columns 85
No_of_seqs 107 out of 748
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 97.5 5.3E-05 1.8E-09 55.5 2.5 37 44-80 7-43 (491)
2 3o7q_A L-fucose-proton symport 52.2 3.4 0.00012 29.1 0.3 32 53-84 30-61 (438)
3 2gfp_A EMRD, multidrug resista 19.4 23 0.00079 24.3 -0.0 30 55-84 6-35 (375)
4 1pw4_A Glycerol-3-phosphate tr 19.0 49 0.0017 23.1 1.6 37 48-85 27-63 (451)
5 2zjs_E Preprotein translocase 12.3 83 0.0028 17.5 1.1 23 47-69 32-54 (60)
6 2b2h_A AMT-1, ammonium transpo 12.1 48 0.0017 25.4 0.1 23 46-68 42-64 (399)
7 3dl8_C SECE; RECA-type ATPase 11.5 1.1E+02 0.0037 17.3 1.5 29 44-72 28-56 (65)
8 2ls4_A High affinity copper up 13.7 59 0.002 15.8 0.0 20 46-65 4-24 (26)
9 1u7g_A Probable ammonium trans 10.1 50 0.0017 25.2 -0.4 22 47-68 48-69 (385)
10 3din_D Preprotein translocase 9.1 1.1E+02 0.0038 17.3 0.9 26 46-71 30-55 (65)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.45 E-value=5.3e-05 Score=55.48 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHhhhhccccccccchhhHHHHhhcC
Q 041389 44 TPVVVLSTLVAICGSFAHGCSVGYSSAAESGMRADLG 80 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~ 80 (85)
++|+++++++|++|+|+||||++++|++++.++.++.
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~ 43 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFV 43 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999887764
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=52.17 E-value=3.4 Score=29.11 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=25.0
Q ss_pred HHHHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 53 VAICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 53 iAslgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
+.++..++.|++.+..++..+.+.++++++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 61 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNF 61 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH
Confidence 34445577888888899999999999998764
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=19.41 E-value=23 Score=24.35 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=21.0
Q ss_pred HHhhhhccccccccchhhHHHHhhcCCCCC
Q 041389 55 ICGSFAHGCSVGYSSAAESGMRADLGLSVT 84 (85)
Q Consensus 55 slgs~lfGydlGviSga~~~i~~dl~LS~~ 84 (85)
.++.++.+++.+..++..+.+.++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 35 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREG 35 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHH
Confidence 344456666667777888888888887653
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.99 E-value=49 Score=23.05 Aligned_cols=37 Identities=14% Similarity=-0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhccccccccchhhHHHHhhcCCCCCC
Q 041389 48 VLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVTE 85 (85)
Q Consensus 48 ~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~q 85 (85)
....+...++.++.+++.+..++..+.+.+++ ++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~ 63 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD 63 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH
Confidence 34445556666778888888888888888888 77653
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=12.27 E-value=83 Score=17.47 Aligned_cols=23 Identities=0% Similarity=-0.207 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhccccccccc
Q 041389 47 VVLSTLVAICGSFAHGCSVGYSS 69 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGviS 69 (85)
....++++.++.++++.|.+...
T Consensus 32 ~vViv~v~i~~~~~~~vD~~~~~ 54 (60)
T 2zjs_E 32 QAILLFTLAFMVILGLYDTVFRF 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667788888876543
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=12.11 E-value=48 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhhcccccccc
Q 041389 46 VVVLSTLVAICGSFAHGCSVGYS 68 (85)
Q Consensus 46 ~~~l~a~iAslgs~lfGydlGvi 68 (85)
..++...++++..+++||.+.+.
T Consensus 42 k~~~~~~i~~i~w~~~Gy~lafg 64 (399)
T 2b2h_A 42 LSFISLIITVLLWIFYGYSVSFG 64 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555667788889999987664
No 7
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=11.51 E-value=1.1e+02 Score=17.31 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHhhhhccccccccchhh
Q 041389 44 TPVVVLSTLVAICGSFAHGCSVGYSSAAE 72 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfGydlGviSga~ 72 (85)
+......++++.++.++++.|.+......
T Consensus 28 ~~T~vViv~v~i~~~~i~~vD~~~~~~~~ 56 (65)
T 3dl8_C 28 KATISVIIFSLAIGVYLWILDLTFTKIIS 56 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566667788888876655443
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.68 E-value=59 Score=15.77 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=11.8
Q ss_pred HHHHHHH-HHHHhhhhccccc
Q 041389 46 VVVLSTL-VAICGSFAHGCSV 65 (85)
Q Consensus 46 ~~~l~a~-iAslgs~lfGydl 65 (85)
+++++++ =|.+|.|+||...
T Consensus 4 ~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 3444444 4566888888653
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=10.14 E-value=50 Score=25.19 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhhcccccccc
Q 041389 47 VVLSTLVAICGSFAHGCSVGYS 68 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGvi 68 (85)
.++...++++..+++||.+.+-
T Consensus 48 ~~~~~~i~~i~w~~~Gy~lafg 69 (385)
T 1u7g_A 48 VTVTFALVCILWVVYGYSLASG 69 (385)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4555567778888888877554
No 10
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=9.12 E-value=1.1e+02 Score=17.26 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhccccccccchh
Q 041389 46 VVVLSTLVAICGSFAHGCSVGYSSAA 71 (85)
Q Consensus 46 ~~~l~a~iAslgs~lfGydlGviSga 71 (85)
.....++++.++.++++.|.+.....
T Consensus 30 T~vViv~~~i~~~~i~~vD~~~~~~~ 55 (65)
T 3din_D 30 FGVVLVILAVTSVYFFVLDFIFSGVV 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566668888887665444
Done!