Query 041389
Match_columns 85
No_of_seqs 107 out of 748
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 10:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041389.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041389hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 30.7 6.2 0.00045 25.7 0.5 38 47-85 23-60 (447)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 9.7 25 0.0018 24.8 -0.4 22 47-68 46-67 (383)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 8.7 48 0.0035 15.5 0.5 15 54-68 9-23 (32)
4 d1ibxa_ d.15.2.1 (A:) Caspase- 5.9 1.2E+02 0.0088 16.9 1.5 16 16-31 1-16 (81)
5 d1q90r_ f.23.12.1 (R:) ISP sub 5.8 37 0.0027 16.9 -0.8 16 48-63 17-32 (39)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 5.8 81 0.0059 14.7 0.6 19 48-66 5-23 (32)
7 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 36 0.0026 20.9 -1.1 21 64-84 22-43 (417)
8 d1uspa_ d.227.1.1 (A:) Organic 5.5 2.4E+02 0.018 15.4 2.9 18 44-61 43-60 (137)
9 d1n2fa_ d.227.1.1 (A:) Organic 4.6 3E+02 0.022 15.2 2.8 19 44-62 48-66 (142)
10 d2i00a1 d.106.1.4 (A:301-406) 4.6 1.2E+02 0.0089 16.8 0.9 11 53-63 59-69 (106)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.73 E-value=6.2 Score=25.69 Aligned_cols=38 Identities=16% Similarity=-0.105 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhhccccccccchhhHHHHhhcCCCCCC
Q 041389 47 VVLSTLVAICGSFAHGCSVGYSSAAESGMRADLGLSVTE 85 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGviSga~~~i~~dl~LS~~q 85 (85)
.+...+...++.++..++....+.+.+.++ ++++|..|
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~ 60 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD 60 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH
Confidence 344444444555565555555666677776 57888765
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.71 E-value=25 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhcccccccc
Q 041389 47 VVLSTLVAICGSFAHGCSVGYS 68 (85)
Q Consensus 47 ~~l~a~iAslgs~lfGydlGvi 68 (85)
.++...+..+..+++||.+.+-
T Consensus 46 ~~~~~~~~~i~~~~~Gy~lafg 67 (383)
T d1u7ga_ 46 VTVTFALVCILWVVYGYSLASG 67 (383)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHheeeEeEEeEcC
Confidence 3455556777888999977653
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.71 E-value=48 Score=15.49 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.3
Q ss_pred HHHhhhhcccccccc
Q 041389 54 AICGSFAHGCSVGYS 68 (85)
Q Consensus 54 Aslgs~lfGydlGvi 68 (85)
..+-.+.||...|++
T Consensus 9 ivfialffgiavgii 23 (32)
T d2e74e1 9 IVFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhe
Confidence 333444566555443
No 4
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.86 E-value=1.2e+02 Score=16.89 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=11.2
Q ss_pred cccCCCCcccccccCc
Q 041389 16 SLAQPNPIKITNEVGE 31 (85)
Q Consensus 16 ~~~~~~~~~~~~~~g~ 31 (85)
|+.+++|.||++...+
T Consensus 1 ~~~~~kpfKv~~~~r~ 16 (81)
T d1ibxa_ 1 MLQKPKSVKLRALRSP 16 (81)
T ss_dssp CCSCCCCCBEECSSSS
T ss_pred CCCCCCceEEccCCCC
Confidence 3457888888876655
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.83 E-value=37 Score=16.89 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhccc
Q 041389 48 VLSTLVAICGSFAHGC 63 (85)
Q Consensus 48 ~l~a~iAslgs~lfGy 63 (85)
++-++....++++++|
T Consensus 17 l~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 17 LAGGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccce
Confidence 3334444556666665
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.79 E-value=81 Score=14.69 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhcccccc
Q 041389 48 VLSTLVAICGSFAHGCSVG 66 (85)
Q Consensus 48 ~l~a~iAslgs~lfGydlG 66 (85)
++.+.+-++|-++.|+.+|
T Consensus 5 il~aa~lsfglifvgwglg 23 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLG 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHH
Confidence 3455566676677776554
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.68 E-value=36 Score=20.86 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=12.7
Q ss_pred cccccchhhH-HHHhhcCCCCC
Q 041389 64 SVGYSSAAES-GMRADLGLSVT 84 (85)
Q Consensus 64 dlGviSga~~-~i~~dl~LS~~ 84 (85)
..|...|..+ ++++++++|..
T Consensus 22 ~~~~~~~~l~~~l~~~~g~s~~ 43 (417)
T d1pv7a_ 22 IMGAYFPFFPIWLHDINHISKS 43 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHccCCCHH
Confidence 3345556655 46777887754
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.51 E-value=2.4e+02 Score=15.41 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhhhhc
Q 041389 44 TPVVVLSTLVAICGSFAH 61 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lf 61 (85)
++..++++.+|+|-.+.+
T Consensus 43 ~P~elllaAlasC~~~t~ 60 (137)
T d1uspa_ 43 NPEQLFAAGYAACFQGAL 60 (137)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 677788777777755444
No 9
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=4.62 E-value=3e+02 Score=15.20 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhhhhcc
Q 041389 44 TPVVVLSTLVAICGSFAHG 62 (85)
Q Consensus 44 t~~~~l~a~iAslgs~lfG 62 (85)
++..++++.+++|-.+.+.
T Consensus 48 ~P~elllaalasC~~~t~~ 66 (142)
T d1n2fa_ 48 NPEQLFAAGYSACFIGAMK 66 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6777777777777544443
No 10
>d2i00a1 d.106.1.4 (A:301-406) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.60 E-value=1.2e+02 Score=16.76 Aligned_cols=11 Identities=0% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHhhhhccc
Q 041389 53 VAICGSFAHGC 63 (85)
Q Consensus 53 iAslgs~lfGy 63 (85)
+..|+++++||
T Consensus 59 I~~Ls~l~~G~ 69 (106)
T d2i00a1 59 IQTLTCLVMNY 69 (106)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhCC
Done!