BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041390
(639 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 303/733 (41%), Positives = 391/733 (53%), Gaps = 145/733 (19%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTH 60
MD+YEATK+VFSRI+A+DP++A+KIMG+LLIQD+G+KEMIRLAFGPE LLH ++ KA+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 LSNASASASASATNPSSLSPSSAPWLPPASLSYANVVNGSSCSSTNAAASASESLYYSNI 120
L AS + P+S++ ++A P LS N + S + +S S
Sbjct: 61 LGLLPASGPGT---PTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVF 117
Query: 121 SNNNS----------------------------YASSDIADDFHQFQDHLSFLDESS--- 149
S NNS + D D Q QD L+FL+E
Sbjct: 118 SRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPA 177
Query: 150 ----------ELASSTDADHHNHHHLLKRSLSLPVH------PNVCFGSDDDPNSGLGWK 193
E S D + L + P H +C G D GLGWK
Sbjct: 178 GHQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGAD----GLGWK 233
Query: 194 HCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELSQELLLRSKASVQQRK 253
CLY+A+G+CKNG+AC+F H P+ A PS + + Q+ L+RSK+ QR
Sbjct: 234 PCLYYARGYCKNGSACRFVHGGLPDDAAGKM---DPSAVEQ--QCQDFLIRSKS---QRL 285
Query: 254 LAAASQF--MGSFP-----YNKCMNFL-------NDTQRSAA---LMMGDELHNKFGTCS 296
AAA + GS P KC++ L N++QR+AA LM+G + +KF
Sbjct: 286 AAAAFPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRP 345
Query: 297 RPERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVT 356
R ER DF MNP +RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVT
Sbjct: 346 RLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVT 405
Query: 357 FVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSSACSSPS 416
FVYPETVKLILAKGNPHF+CD+RVLVKPYKEKGKV +K ++QHQ ER ++SS C++P+
Sbjct: 406 FVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQPG-ERVDFSS-CTTPT 463
Query: 417 G-----PFDFH-FGGRMLYN----NQEMLRRK---LEEQADLQQAIEMQGRRLMNLQLHL 463
G PFD H G RML + N+ +LRRK ++ A+LQQAIE+ RRLM LQL
Sbjct: 464 GLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQL-- 521
Query: 464 KNNHLNHQFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQIT 523
L+ + S + P+P + PF S +G SP ++
Sbjct: 522 ----LDFK-----SRAAAAPTPIGN----------PFSASQTAA--NATGESPPDSGELG 560
Query: 524 DHLFHREENRTSNHNKNNNSDGNDKEE------KPNSDENDLCDSLEHILPDNLFASPKK 577
+ H K N G DKEE PN+D + S+EH LPD+ FASP K
Sbjct: 561 -----KGSGFLLAHKKAVN--GADKEESTGESSSPNTDSD---QSVEHNLPDSPFASPTK 610
Query: 578 SAGGHITVFSSASAEVDEKNTSSVTST-----------NNNTKLPSTSLNMSSLNSCLLQ 626
SAG F+ AE+ ++ ++T N LPS +L+M S
Sbjct: 611 SAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPS-ALDMPSPKPYFFP 669
Query: 627 MSRFSSGQGTIGM 639
MSR +S G IGM
Sbjct: 670 MSRLASDHGAIGM 682
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 296/734 (40%), Positives = 384/734 (52%), Gaps = 141/734 (19%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTH 60
MD+YEATK+VFSRI+A+DP++A+KIMG LLIQD+GDKEMIRLAFGPE LLH+++ +A+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LS---NASASASASATNPSSLSP----------------------SSAPWLPPASLSYAN 95
L+ +S+S T P++ SP S + W S +N
Sbjct: 61 LALLPPPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQPFSRSN 120
Query: 96 VVNGSSCSSTNAAASASESLYYSNISNNNSYASS--------DIADDFHQFQDHLSFLDE 147
S + A E L S + A++ D+ D Q Q+ L+FL+E
Sbjct: 121 -------GSVDEVVGAGEELISPANSGGGAAANAPPFFPRGGDVLLDDFQLQEQLAFLNE 173
Query: 148 S-------------SELASSTDADHHNHH-HLLKRSLSLPVHPN------VCFGSDDDPN 187
+E S + + L + P H +C G +
Sbjct: 174 GGVNPSHPLQGFDGAECRSPGPGEGGGMFPYGLGWANGGPGHRRSASVNELCLGGGS--S 231
Query: 188 SGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELSQELLLRSKA 247
G GWK CLY+A+GFCKNG++C+F H A T AA+ + +E + Q+ LLRSK+
Sbjct: 232 DGFGWKPCLYYARGFCKNGSSCRFVHGDDAAALTGAAM---DAATAEQQQCQDFLLRSKS 288
Query: 248 SVQQRKLAAASQF--MGSFP-----YNKCMNFL-----NDTQRSAA---LMMG--DELHN 290
QR AA + GS P KC++ L ND QR+AA LM+G DE H
Sbjct: 289 ---QRLGPAAFPYSPTGSLPGSPSAATKCLSLLLQQQHNDNQRAAAAAALMLGGSDEAH- 344
Query: 291 KFGTCSRPERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKR 350
KF R +R DF MNP +RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKR
Sbjct: 345 KFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKR 404
Query: 351 MFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSS 410
MFGFVTFVYPETVKLILAKGNPHF+CD+RVLVKPYKEKGKV + K ++HQ G++ S
Sbjct: 405 MFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD-KYRKHQ-----GDF-S 457
Query: 411 ACSSPSG-----PFDFH-FGGRMLY----NNQEMLRRK---LEEQADLQQAIEMQGRRLM 457
C++P+G PFD H G RML N+ MLRRK ++ A+LQQAIE+ RRLM
Sbjct: 458 GCTTPTGLDGRDPFDLHQLGARMLQHSNSTNEMMLRRKLEEQQQAAELQQAIELHSRRLM 517
Query: 458 NLQLHLKNNHLNHQFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPV 517
+LQL N ++ P + S P T + E PP+
Sbjct: 518 DLQLLDLKNRAAAAVTTAMAMTIPTANAFGSSQPLATTMV--------ESPPD------- 562
Query: 518 TDSQITDHLFHREENRTSNHNKNNNSDGNDKEEKPN--SDENDLCDSLEHILPDNLFASP 575
+ Q+ + EE + N G DKEE S D SLEH LPD+ FASP
Sbjct: 563 SGEQLKGTGYFTEERKMVN-------GGGDKEESAGEASLNADSDQSLEHNLPDSPFASP 615
Query: 576 KKSAGGHITVFSSASAEVDEKNTSSVT------STNNNTKL----PSTSLNMSSLNSCLL 625
KS+ F++ V ++ S + TN + PST L++ S
Sbjct: 616 TKSSVSAHQSFTTTDTGVVATSSCSASHVGISAGTNAGGGINHLRPST-LDIPSPRDFFS 674
Query: 626 QMSRFSSGQGTIGM 639
SR +S G IGM
Sbjct: 675 VSSRLASDHGAIGM 688
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 292/722 (40%), Positives = 380/722 (52%), Gaps = 128/722 (17%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTH 60
MD+YEATK+VFSRI+A+DP++A+KIMG LLIQD+GDKEMIRLAFGPE LLH+++ +A+
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKE 60
Query: 61 LS--NASASASASATNPSSLSP--------SSAPWLPPASLSYANVVNGSSCSSTNAAA- 109
L+ +AS+S T P++ SP P P+S + A + S+ AA
Sbjct: 61 LALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWAQAQPFSRSNSMGNGGAAD 120
Query: 110 ---SASESLYYSNISNNNSY---------ASSDIADDFHQFQDHLSFLDESS-------- 149
A E L + + DDF + Q+ L+FL + +
Sbjct: 121 EMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDF-ELQEQLAFLHDGAGGVNPGHA 179
Query: 150 ----ELASSTDADHHNHHHLLKRSLSL----PVHPN------VCFGSDDDPNSGLGWKHC 195
+ A +L L+ P H +C G D G GWK C
Sbjct: 180 LQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSASVNELCLGGD-----GFGWKPC 234
Query: 196 LYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELSQELLLRSKASVQQRKLA 255
LY+A+GFCKNG+ C+F H + A A +E + Q+ LLRSK+ QR
Sbjct: 235 LYYARGFCKNGSTCRFVHGGLSDDAAMDATT------AEQQQCQDFLLRSKS---QRLGP 285
Query: 256 AASQFM--GSFP-----YNKCMNFL-------NDTQRSAALMM----GDELHNKFGTCSR 297
AA F GS P +KC++ L ND QR+AA + GDE H KF R
Sbjct: 286 AAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGDEAH-KFMGRPR 344
Query: 298 PERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF 357
+R DF MNP +RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF
Sbjct: 345 LDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTF 404
Query: 358 VYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSSACSSPSG 417
VYPETVKLILAKGNPHF+CD+RVLVKPYKEKGKV +K ++Q Q G++ C SP+G
Sbjct: 405 VYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQ-----GDF--CCMSPTG 457
Query: 418 -----PFDFH-FGGRMLYN----NQEMLRRK---LEEQADLQQAIEMQGRRLMNLQ-LHL 463
PFDFH G RML + N+ MLRRK ++ A+LQQAI++ RRL+ LQ L L
Sbjct: 458 LDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRRLIGLQLLDL 517
Query: 464 KNNHLNHQFH-HGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQI 522
K++ H +S +PI + S P T + E PP +G Q+
Sbjct: 518 KSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIV--------ESPPSSTG-------QL 562
Query: 523 TDHLFHREENRTSNHNKNNNSDGNDKEEKPNSDENDLCDSLEHILPDNLFASPKKSAGGH 582
E + N +S G E N+D + S EH LPD+ FAS KS
Sbjct: 563 MASCGSPSEGKVVNGGNKADSAG---EVTRNADSD---QSGEHNLPDSPFASSTKSTAFF 616
Query: 583 ITVFSSA-SAEVDEKNTSSV----TSTNNNTKLPSTSLNMSSLNSCLLQMSRFSSGQGTI 637
++A +E D SS ++ + L +L++ S +C M R S G I
Sbjct: 617 TATAATAIGSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSE-HGAI 675
Query: 638 GM 639
GM
Sbjct: 676 GM 677
>sp|Q9SV09|C3H46_ARATH Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis
thaliana GN=At3g51950 PE=1 SV=1
Length = 540
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 278/649 (42%), Positives = 347/649 (53%), Gaps = 132/649 (20%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTH 60
MD YEAT++V SRI+++DPENASKIMG LL+QD+G+KEMIRLAFGPETL+H++I KAK
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LSNASASASASATNPSSLSPSS--APWLPPASLSYANVVNGSSCSSTNAAASASESLYYS 118
L + S S + +SP + L PASL + Y+
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPF-----------------------YA 97
Query: 119 NISNNNSYASSDIADDFHQFQDHLSFLDESSELASSTDADHHNHHHLLKRSLSLPVHPNV 178
N +S D+ +DF D S S++ S A RS S V +
Sbjct: 98 N----GGRSSRDLTNDFELMDDMNS---RSTDFLGSVHA----------RSGSC-VLDGL 139
Query: 179 CFGSDDDPNSGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELS 238
+G D D G G C YFA+GFCKNG +C+F H + A +VGSPS++
Sbjct: 140 GYGGDSD--LGFGGVPCSYFARGFCKNGASCRFVH-----SDGGADLVGSPSRIE----- 187
Query: 239 QELLLRSKASVQQRKLAAASQFM--GSFPY--NKCMNFL-NDTQRSAA-LMMGDELHNKF 292
LLRS SV R A FM S P K +N ND QR+AA LM+GDEL K
Sbjct: 188 ---LLRSN-SVPPR---LAHHFMTRSSLPSFSTKGVNLQQNDVQRAAAALMIGDELQ-KL 239
Query: 293 GTCSRPERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMF 352
G RPER D P++RQIYLTFPADS FREEDVSNYFS +GPV DVRIPYQQKRMF
Sbjct: 240 GRW-RPERIDLSAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMF 298
Query: 353 GFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSSAC 412
GFVTFVYPETVK ILAKGNPHFVCDSRVLVKPYKEKGKV +K + + E S
Sbjct: 299 GFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTEREL----SPT 354
Query: 413 SSPSGPFDFHFGGRMLYNNQE--MLRRKLEEQADLQQAIEMQGRRLMNLQLHLKNNHLNH 470
S P D GGR YNN + + R K EE + +E+Q RRLMNLQL L+
Sbjct: 355 GLDSSPRDV-LGGRGFYNNTQDVLWRSKFEE-----EILELQSRRLMNLQL------LDV 402
Query: 471 QFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQITDHLFHRE 530
+ H L+ SPT HSPN PF +S +SP S I +
Sbjct: 403 KKHFQLN------SPTNIHSPN------PF---------SQSLISPRPLSVI------KR 435
Query: 531 ENRTSNHNKNNNSDGNDKEEKPNSDENDLCDSLEHILPDNLFASPKKSAGGHITVFSSAS 590
E K ++ +G+D D +L + LE LPD+ FASP H+ +F+ S
Sbjct: 436 EYDGGEKGKGSSKEGSD------DDTMNLPERLEDSLPDSPFASPAH----HLLLFAD-S 484
Query: 591 AEVDEKNTSSVTSTNNNTKLPSTSLNMSSLNSCLLQMSRFSSGQGTIGM 639
A+ + + S +S N++ PST + S NS QM R + IGM
Sbjct: 485 ADNNGSDLWSPSSDNDDNSTPSTLSD--SFNSFNYQMPRLPA----IGM 527
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 234/571 (40%), Positives = 300/571 (52%), Gaps = 87/571 (15%)
Query: 78 LSPSSAPWLPPASLSYANVVNGSSCSSTNAAASASESLYYSNISNNNSYASSDIADDFHQ 137
+SP P P S +N ++ + S +AA A D+ DD Q
Sbjct: 131 ISPKHTPISKPFSSHQSNGLSATHSGSADAAGGA------------------DLLDD-QQ 171
Query: 138 FQDHLSFLDESSE-----------LASSTDADHHNHHHLLKRSLSLPVHPNVCFGSDDDP 186
D LSFLD+S L S D D H H +RS S + F S DD
Sbjct: 172 LNDCLSFLDDSCSKTEDLVDPSIPLDYSVDGDGETHLH--RRSFSC----DASFVSGDDG 225
Query: 187 NSGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVG-SPSKLSEFELSQELLLRS 245
G G K C+YF++G CKNG +CKF H P+ IV SP K+ F E ++R
Sbjct: 226 FGG-GCKPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEMMRL 284
Query: 246 KASVQQRKLAAASQFMG---SFPYNKCMNFL--NDTQRSAALMMGDELHNKFGTCS--RP 298
K + QQ++LA SQ +G PY K M+FL QR L GDE +F + S R
Sbjct: 285 KLAYQQQRLA--SQILGRAPQLPYEKRMDFLLQQHAQRDGGLPFGDE---RFWSSSPGRL 339
Query: 299 ERNDFFGSM----NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGF 354
ER + + N ++RQIYLTFPADSTF++EDV+ YFS++G V DVRIPYQQKRMFGF
Sbjct: 340 ERMELAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGF 399
Query: 355 VTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKK-QQQHQQQMERGEYSSACS 413
V+F +PETVK++LA+GNPHF+CDSRVLVKPYKEKGKV +KK QQ QQQ+ERG Y S CS
Sbjct: 400 VSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERGNY-SPCS 458
Query: 414 SPSG-----PFDFHFGGRMLYNNQEMLRRKLEEQADLQQAIEMQGRRLMNLQLHLKNNHL 468
SPSG DFH G +MLY +EM+RRK+ EQADL +AIE++ RR +NLQL N +
Sbjct: 459 SPSGIDPREQSDFHLGSKMLYERREMMRRKI-EQADLLRAIELERRRFINLQLPEFKNSV 517
Query: 469 NHQFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQITDHLFH 528
H S GSP F + + P +S ++ ++TD
Sbjct: 518 TLNHHRSFSVGSP----------------GYFSSAGNQSPDFQSELNGADALKVTDDTLE 561
Query: 529 REENRTSNHNKNNNSDGNDKEEKPNSDE---NDLCDSLEHILPDNLFASPKKSAGGHITV 585
N NNS N +E+ N E D ++E +LP NLF S S H T
Sbjct: 562 LHPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPS-ASSTDDHKT- 619
Query: 586 FSSASAEVDEKNTSSVTSTNNNTKLPSTSLN 616
SAE + K V+STN N P + N
Sbjct: 620 --DDSAETNAK--VGVSSTNENDHEPPVTTN 646
>sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis
thaliana GN=At2g05160 PE=2 SV=1
Length = 536
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 207/436 (47%), Gaps = 87/436 (19%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLI-QDNGDKEMIRLAFGPETLLHNLIFKAKT 59
M+ E+ +V +RI+ ++PENA+KI GYLL+ Q+NG+++MIRLAF P++++ ++I K
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 HLSNASASASASATNPSSLSPSSAPWLPPASLSYANVVNGSSCSSTNAAASASESLYYSN 119
L+ S SP S P S+ S S E+ +
Sbjct: 61 ELARNSHHYH---------SPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMD 111
Query: 120 ISNNNSYASSDIADDFHQFQDHLSFLDESSELASSTDADHHNHHHLL--KRSLSLPVHPN 177
NN F F+D L+ S E ++ + L +RS SLP P
Sbjct: 112 TLQNNL--------QFLNFEDPLT----SPEFSNGFFSQERQCLPLRTSRRSPSLPEFP- 158
Query: 178 VCFGSDDDPNSGLGWKHCLYFAKGFCKNGTACKFHHIHS-PEAATAAAI----------- 225
K C YF KGFCK+G C++ H PE + A +
Sbjct: 159 --------------VKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEE 204
Query: 226 -VGSPSKLS--EFELSQELLLRSKASVQQRKLAAASQFMGSFPYNKCMN---FLNDTQR- 278
V SP L E E+ + L LR A + A+ M Y + + +L ++QR
Sbjct: 205 HVVSPVSLEKLEGEIIELLKLRRGAPIS----IASLPMMYYEKYGRTLQAEGYLTESQRH 260
Query: 279 ----SAALMMGDELHNKFGTCSRP--------------------ERNDFFGSMNPSARQI 314
+ + L N RP ERN+ G++ +RQI
Sbjct: 261 GKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEH-GAILAGSRQI 319
Query: 315 YLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHF 374
YLTFPA+S+F E DVS YF+ YG V DVRIP QQKRM+GFVTF ETVK ILAKGNPHF
Sbjct: 320 YLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHF 379
Query: 375 VCDSRVLVKPYKEKGK 390
+C++RVLVKPY+EK +
Sbjct: 380 ICNARVLVKPYREKSR 395
>sp|Q6ZK57|C3H54_ORYSJ Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa
subsp. japonica GN=Os08g0126700 PE=2 SV=2
Length = 653
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 152/307 (49%), Gaps = 57/307 (18%)
Query: 193 KHCLYFAKGFCKNGTACKF-HHIHSPEAATAAAIVG----------SPSKLSEFELSQEL 241
+ C YF+KG CKNG C + HH +A AAI G +P L E+
Sbjct: 264 RPCHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITE 323
Query: 242 LLRSKASVQQRKLAAASQFMGSFPYNKCM---NFLNDTQR--SAALMMGDELH--NKFGT 294
LL S+ Q +A+ G Y K + +L ++QR A + L NK
Sbjct: 324 LLNSRRG-QPVSIASLPTLYGE-KYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRV 381
Query: 295 CSRP-------------ERNDF----------FGSMNPSARQIYLTFPADSTFREEDVSN 331
RP + DF GS+ S+ QIYLTFPA+STF E+DV+N
Sbjct: 382 IERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVAN 441
Query: 332 YFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKV 391
YF YGPV DVRIP Q++RMFGFV+F PETV IL + NPHF+C SRVLVKPY+EK K
Sbjct: 442 YFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKC 501
Query: 392 QEKKQQQHQQQMERGEYSSACSSPSGPFDFHFGGRML---YNNQEMLRRKLEEQADLQQA 448
++ + + M C P F F + Y+ ++R++L E+ ++
Sbjct: 502 VDRTCVDNIKSM-----VPYCP----PRFFEFDQELYTAEYDASRLMRKQLAEKREM--L 550
Query: 449 IEMQGRR 455
+EM+ RR
Sbjct: 551 LEMERRR 557
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTH 60
M+ E KL F+R++ ++PE+ KI G +L+++ + E+++LA+GPE L I K
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 61 LSNASASASASATN 74
L+ A SA+A +
Sbjct: 110 LTVIYARCSAAAAH 123
>sp|Q84ZT0|C3H51_ORYSJ Putative zinc finger CCCH domain-containing protein 51 OS=Oryza
sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1
Length = 513
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 119/228 (52%), Gaps = 37/228 (16%)
Query: 196 LYFAKGFCKNGTACKFHHIHSPEAATAAAI--VGSPSKLSEFELSQELLLRSKASVQQRK 253
+F +G+CK G C+F H PE + S SKL + E+ +ELL+ V +
Sbjct: 184 FHFFRGYCKKGVNCQFFHGSVPELHNPRQVHPFASLSKL-DMEI-RELLIGIPPPVAVDR 241
Query: 254 LAAASQFMGSFPYNKCM---NFLNDTQRSA-------ALMMG-------DELHNKFGTC- 295
L + M Y K + +L ++Q+ +L+MG + H ++
Sbjct: 242 LPS----MYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHVVL 297
Query: 296 ---SRPERNDFFG--------SMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRI 344
+R + D G + QIY+TFP S F ++DV NYF +GPV VRI
Sbjct: 298 VEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRI 357
Query: 345 PYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQ 392
PYQ+KRMFGFV+F+Y ETV+LIL+KG HF+C RVLVK Y EK +++
Sbjct: 358 PYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSELR 405
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQK---RMFGFVTFVYPETVK- 364
PS++ I P +ST +E + F+ YG + VRIP + R FGFV F+ E K
Sbjct: 793 PSSKIIIKNLPFESTIKE--IRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKN 850
Query: 365 LILAKGNPHFVCDSRVLVKPYKEKGK 390
+ A GN HF R LV Y E+ K
Sbjct: 851 AMEALGNSHFY--GRHLVLQYAEQDK 874
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 323 TFREEDVSNYFSIYGPVHDVRIPYQQK----RMFGFVTFVYPETVKLILAK 369
T +E+ YF +YGPV DV I Y Q R FGFV+F + V +L K
Sbjct: 120 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 321 DSTFREEDVSNYFSIYGPVHDVRI----PYQQKRMFGFVTFVYPETVKLILAKGNPHFVC 376
D + +E + +YFS YG V D I Q R FGFV F P V +LA PH +
Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 76
Query: 377 DSRVLVKPYKEKGKVQEK-KQQQHQQQME 404
+ KP +G E+ + ++ QQ E
Sbjct: 77 GRNIDPKPCTPRGMQPERSRPREGWQQKE 105
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 14/58 (24%)
Query: 161 NHHHLLKRSLSLPVHPNVCFGSDDDPNSG----LGWKHCLYFAK-GFCKNGTACKFHH 213
+HH + LPV N NSG LG K C Y+ K G CK GT CKFHH
Sbjct: 130 KYHHPKQDGAVLPVMLN---------NSGFPIRLGEKECSYYMKTGQCKFGTTCKFHH 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,156,454
Number of Sequences: 539616
Number of extensions: 10706806
Number of successful extensions: 84560
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 52889
Number of HSP's gapped (non-prelim): 19457
length of query: 639
length of database: 191,569,459
effective HSP length: 124
effective length of query: 515
effective length of database: 124,657,075
effective search space: 64198393625
effective search space used: 64198393625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)