Query 041390
Match_columns 639
No_of_seqs 358 out of 1706
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 7.9E-23 2.7E-27 206.6 9.8 85 305-392 128-233 (240)
2 4f25_A Polyadenylate-binding p 99.7 8.9E-17 3E-21 142.9 9.7 84 309-393 3-88 (115)
3 3s8s_A Histone-lysine N-methyl 99.7 2.4E-16 8.3E-21 140.1 12.1 81 309-390 4-88 (110)
4 4fxv_A ELAV-like protein 1; RN 99.7 1.9E-16 6.5E-21 138.0 10.0 78 309-387 17-98 (99)
5 2lxi_A RNA-binding protein 10; 99.6 1.9E-16 6.4E-21 135.6 7.7 80 311-391 1-86 (91)
6 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.1E-15 3.6E-20 127.0 9.9 80 306-386 2-85 (85)
7 1whw_A Hypothetical protein ri 99.6 2.1E-15 7.3E-20 129.1 11.9 82 308-390 5-90 (99)
8 3md1_A Nuclear and cytoplasmic 99.6 2E-15 6.8E-20 124.8 10.1 77 312-389 2-82 (83)
9 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.6E-15 5.5E-20 126.4 9.5 79 309-388 4-86 (87)
10 2e5h_A Zinc finger CCHC-type a 99.6 4.5E-15 1.5E-19 125.7 12.0 80 306-386 11-94 (94)
11 2x1f_A MRNA 3'-END-processing 99.6 4.5E-15 1.5E-19 126.8 11.8 82 311-393 2-87 (96)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.3E-15 7.7E-20 129.6 9.9 83 308-391 9-95 (102)
13 2cqi_A Nucleolysin TIAR; RNA r 99.6 4.2E-15 1.4E-19 128.3 11.6 82 308-390 12-95 (103)
14 2cq3_A RNA-binding protein 9; 99.6 5E-15 1.7E-19 127.9 12.1 83 308-391 12-96 (103)
15 4a8x_A RNA-binding protein wit 99.6 3.2E-15 1.1E-19 124.6 10.4 79 310-389 3-86 (88)
16 2dgs_A DAZ-associated protein 99.6 2.7E-15 9.3E-20 128.7 9.9 82 308-391 7-92 (99)
17 2dnz_A Probable RNA-binding pr 99.6 2.5E-15 8.7E-20 127.4 9.6 81 309-390 3-87 (95)
18 1x4a_A Splicing factor, argini 99.6 4.7E-15 1.6E-19 129.5 11.4 83 307-390 18-101 (109)
19 1x5t_A Splicing factor 3B subu 99.6 3.1E-15 1.1E-19 127.1 9.8 82 309-391 3-89 (96)
20 2do4_A Squamous cell carcinoma 99.6 3.7E-15 1.3E-19 128.0 10.3 81 309-390 15-98 (100)
21 1sjq_A Polypyrimidine tract-bi 99.6 1.8E-15 6.2E-20 135.1 8.4 83 308-393 13-97 (105)
22 2cq0_A Eukaryotic translation 99.6 4E-15 1.4E-19 128.4 10.3 82 309-391 13-98 (103)
23 1x5u_A Splicing factor 3B subu 99.6 3.7E-15 1.3E-19 128.9 10.0 82 308-390 12-97 (105)
24 2wbr_A GW182, gawky, LD47780P; 99.6 4E-15 1.4E-19 129.5 10.1 76 308-386 4-79 (89)
25 2dgo_A Cytotoxic granule-assoc 99.6 5.1E-15 1.7E-19 130.2 10.9 82 309-391 13-98 (115)
26 2cpf_A RNA binding motif prote 99.6 6.5E-15 2.2E-19 125.8 10.8 81 309-390 3-90 (98)
27 2jvr_A Nucleolar protein 3; RN 99.6 5E-15 1.7E-19 132.7 10.4 82 306-388 23-105 (111)
28 2cpz_A CUG triplet repeat RNA- 99.6 3.7E-15 1.3E-19 131.3 9.4 83 308-391 22-108 (115)
29 1x4h_A RNA-binding protein 28; 99.6 5.9E-15 2E-19 128.6 10.5 83 308-391 12-104 (111)
30 2dgx_A KIAA0430 protein; RRM d 99.6 9.1E-15 3.1E-19 125.5 11.3 81 309-390 7-92 (96)
31 2cqc_A Arginine/serine-rich sp 99.6 7.5E-15 2.6E-19 124.3 10.6 79 308-387 12-94 (95)
32 1x5s_A Cold-inducible RNA-bind 99.6 2.9E-15 9.8E-20 128.9 8.0 82 308-390 9-94 (102)
33 2lkz_A RNA-binding protein 5; 99.6 2.3E-15 7.8E-20 131.1 7.3 77 310-387 8-94 (95)
34 1x5p_A Negative elongation fac 99.6 1.4E-14 4.8E-19 124.2 11.9 77 309-390 13-89 (97)
35 1oo0_B CG8781-PA, drosophila Y 99.6 8E-15 2.7E-19 128.0 10.5 81 309-390 24-108 (110)
36 2err_A Ataxin-2-binding protei 99.6 5.6E-15 1.9E-19 130.1 9.5 81 308-389 26-108 (109)
37 2ytc_A PRE-mRNA-splicing facto 99.6 1E-14 3.5E-19 121.3 10.4 76 308-386 9-85 (85)
38 2ywk_A Putative RNA-binding pr 99.6 6.3E-15 2.1E-19 125.0 9.2 79 308-387 13-94 (95)
39 1p27_B RNA-binding protein 8A; 99.6 4.4E-15 1.5E-19 128.6 8.3 81 309-390 21-105 (106)
40 2la4_A Nuclear and cytoplasmic 99.6 4.6E-15 1.6E-19 127.6 8.4 77 309-388 25-101 (101)
41 2dgv_A HnRNP M, heterogeneous 99.6 4.4E-15 1.5E-19 125.3 8.1 82 308-390 5-88 (92)
42 2d9p_A Polyadenylate-binding p 99.6 5.3E-15 1.8E-19 127.7 8.8 83 308-391 12-96 (103)
43 2e5j_A Methenyltetrahydrofolat 99.6 5.7E-15 1.9E-19 126.6 8.7 82 307-390 15-96 (97)
44 3r27_A HnRNP L, heterogeneous 99.6 8.1E-15 2.8E-19 129.9 9.8 79 308-389 18-98 (100)
45 2dnh_A Bruno-like 5, RNA bindi 99.6 5.9E-15 2E-19 127.6 8.7 82 309-391 13-100 (105)
46 2dnm_A SRP46 splicing factor; 99.6 4.9E-15 1.7E-19 127.9 7.9 81 309-390 11-95 (103)
47 3ucg_A Polyadenylate-binding p 99.6 1.2E-14 4E-19 121.7 10.0 77 310-388 5-85 (89)
48 1nu4_A U1A RNA binding domain; 99.6 7.2E-15 2.5E-19 125.1 8.8 85 308-393 5-94 (97)
49 3ns6_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 132.1 4.3 79 310-389 5-94 (100)
50 2rs2_A Musashi-1, RNA-binding 99.6 1.7E-14 5.8E-19 127.2 11.3 81 309-391 23-107 (109)
51 2cpi_A CCR4-NOT transcription 99.6 7.1E-15 2.4E-19 129.6 8.8 80 309-389 13-102 (111)
52 1s79_A Lupus LA protein; RRM, 99.6 4.5E-15 1.6E-19 130.6 7.5 77 309-387 9-88 (103)
53 2cqd_A RNA-binding region cont 99.6 1.8E-14 6.1E-19 127.2 11.0 81 308-390 14-98 (116)
54 2cph_A RNA binding motif prote 99.6 1E-14 3.4E-19 126.3 9.2 82 308-390 12-99 (107)
55 2cq1_A PTB-like protein L; RRM 99.6 1.7E-14 6E-19 127.0 10.9 80 309-391 13-94 (101)
56 1u6f_A Tcubp1, RNA-binding pro 99.5 1.1E-14 3.9E-19 132.1 9.9 83 308-391 39-125 (139)
57 2do0_A HnRNP M, heterogeneous 99.5 1.6E-14 5.3E-19 126.7 10.5 80 309-389 13-95 (114)
58 3n9u_C Cleavage and polyadenyl 99.5 1.2E-14 4E-19 137.0 10.3 81 310-391 54-140 (156)
59 1x4d_A Matrin 3; structural ge 99.5 5.2E-15 1.8E-19 131.0 7.4 79 309-389 13-93 (102)
60 3p5t_L Cleavage and polyadenyl 99.5 1.7E-15 5.9E-20 128.4 4.2 78 312-390 2-85 (90)
61 2dnq_A RNA-binding protein 4B; 99.5 1.3E-14 4.5E-19 122.5 9.5 79 308-391 5-83 (90)
62 1p1t_A Cleavage stimulation fa 99.5 7E-15 2.4E-19 126.7 8.0 82 310-392 7-92 (104)
63 2dgp_A Bruno-like 4, RNA bindi 99.5 7.9E-15 2.7E-19 127.0 8.4 82 308-390 10-98 (106)
64 3s7r_A Heterogeneous nuclear r 99.5 2.1E-14 7.3E-19 120.1 10.6 75 309-385 9-87 (87)
65 2khc_A Testis-specific RNP-typ 99.5 1E-14 3.6E-19 128.8 9.2 78 308-386 37-118 (118)
66 1x4g_A Nucleolysin TIAR; struc 99.5 1.7E-14 5.7E-19 126.2 10.1 81 308-391 22-102 (109)
67 2dh8_A DAZ-associated protein 99.5 8.5E-15 2.9E-19 126.9 8.1 82 308-391 13-98 (105)
68 2div_A TRNA selenocysteine ass 99.5 1.3E-14 4.3E-19 124.3 8.9 81 308-389 6-95 (99)
69 2fy1_A RNA-binding motif prote 99.5 1.5E-14 5.2E-19 129.0 9.8 81 309-390 5-88 (116)
70 1why_A Hypothetical protein ri 99.5 2E-14 6.9E-19 123.0 10.2 80 308-390 14-95 (97)
71 2cpe_A RNA-binding protein EWS 99.5 1.4E-14 4.9E-19 127.0 9.4 82 309-391 13-106 (113)
72 2cpj_A Non-POU domain-containi 99.5 1.1E-14 3.8E-19 125.1 8.4 80 308-390 12-91 (99)
73 1x4c_A Splicing factor, argini 99.5 4.8E-14 1.7E-18 123.5 12.4 78 309-390 13-95 (108)
74 2a3j_A U1 small nuclear ribonu 99.5 9.2E-15 3.1E-19 133.8 8.1 84 309-393 27-115 (127)
75 2dng_A Eukaryotic translation 99.5 2.5E-14 8.4E-19 123.7 10.3 80 308-390 12-95 (103)
76 2jrs_A RNA-binding protein 39; 99.5 1.1E-14 3.8E-19 128.3 8.1 81 308-389 23-107 (108)
77 2cq4_A RNA binding motif prote 99.5 1E-14 3.5E-19 128.3 7.8 78 309-388 23-104 (114)
78 3ulh_A THO complex subunit 4; 99.5 2.7E-14 9.3E-19 123.8 10.4 78 308-386 26-106 (107)
79 1x4b_A Heterogeneous nuclear r 99.5 2.6E-14 9E-19 126.1 10.4 80 310-391 26-109 (116)
80 1wi8_A EIF-4B, eukaryotic tran 99.5 2.9E-14 1E-18 123.5 10.5 80 309-391 13-97 (104)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.4E-14 1.2E-18 128.1 11.3 78 307-385 59-140 (140)
82 2kxn_B Transformer-2 protein h 99.5 1.1E-14 3.9E-19 132.6 8.3 81 308-389 43-127 (129)
83 2dgt_A RNA-binding protein 30; 99.5 4.7E-14 1.6E-18 119.6 11.5 79 308-391 7-85 (92)
84 2nlw_A Eukaryotic translation 99.5 1.4E-14 4.9E-19 126.5 8.5 80 310-390 14-102 (105)
85 3lqv_A PRE-mRNA branch site pr 99.5 1.3E-14 4.3E-19 127.7 8.1 79 309-388 6-85 (115)
86 2cqp_A RNA-binding protein 12; 99.5 1.7E-14 5.7E-19 123.3 8.4 81 308-389 12-96 (98)
87 2ad9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.3E-19 132.2 8.0 81 308-391 28-110 (119)
88 2dhg_A TRNA selenocysteine ass 99.5 1.2E-14 4E-19 125.5 7.3 82 309-391 7-93 (104)
89 2la6_A RNA-binding protein FUS 99.5 1.5E-14 5.2E-19 124.2 7.9 78 308-386 10-99 (99)
90 2kt5_A RNA and export factor-b 99.5 4.1E-14 1.4E-18 126.5 10.9 82 307-389 31-115 (124)
91 2dgw_A Probable RNA-binding pr 99.5 5.5E-14 1.9E-18 118.7 11.1 80 308-390 7-89 (91)
92 1wex_A Hypothetical protein (r 99.5 1.5E-14 5.2E-19 127.8 8.0 79 309-390 13-93 (104)
93 3ex7_B RNA-binding protein 8A; 99.5 2.3E-14 7.8E-19 128.0 8.9 83 308-391 19-105 (126)
94 1whx_A Hypothetical protein ri 99.5 1.7E-14 5.8E-19 127.7 7.8 76 310-388 9-84 (111)
95 2jvo_A Nucleolar protein 3; nu 99.5 3.6E-14 1.2E-18 125.2 9.8 79 308-391 28-106 (108)
96 2dnp_A RNA-binding protein 14; 99.5 4.1E-14 1.4E-18 119.4 9.7 78 308-390 6-83 (90)
97 2mss_A Protein (musashi1); RNA 99.5 1.3E-14 4.3E-19 118.2 6.3 71 313-385 1-75 (75)
98 2kn4_A Immunoglobulin G-bindin 99.5 4.2E-14 1.4E-18 130.7 10.6 82 308-390 67-152 (158)
99 2hvz_A Splicing factor, argini 99.5 1E-14 3.4E-19 125.5 5.9 77 312-390 1-77 (101)
100 2cqg_A TDP-43, TAR DNA-binding 99.5 6.9E-14 2.3E-18 120.7 11.2 80 309-391 13-96 (103)
101 1h2v_Z 20 kDa nuclear CAP bind 99.5 4.7E-14 1.6E-18 130.8 10.8 81 309-390 37-121 (156)
102 2dgu_A Heterogeneous nuclear r 99.5 5.7E-14 2E-18 121.6 10.6 78 309-391 9-86 (103)
103 2dis_A Unnamed protein product 99.5 2.7E-14 9.4E-19 124.2 8.5 82 309-391 6-95 (109)
104 2cpy_A RNA-binding protein 12; 99.5 2.8E-14 9.6E-19 126.3 8.7 80 308-389 12-95 (114)
105 2ki2_A SS-DNA binding protein 99.5 5E-15 1.7E-19 124.7 3.7 78 312-391 2-83 (90)
106 2ek1_A RNA-binding protein 12; 99.5 1.5E-14 5.1E-19 122.7 6.6 78 308-386 12-93 (95)
107 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.2E-14 4.1E-19 118.5 5.7 72 312-385 1-76 (77)
108 2krb_A Eukaryotic translation 99.5 1.3E-14 4.5E-19 120.5 5.9 71 311-382 1-80 (81)
109 2jwn_A Embryonic polyadenylate 99.5 4.5E-14 1.5E-18 125.7 9.8 78 310-389 35-116 (124)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.6E-19 124.8 6.6 78 309-389 17-99 (100)
111 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.3E-19 129.8 7.0 80 308-390 22-104 (112)
112 3d2w_A TAR DNA-binding protein 99.5 5.3E-14 1.8E-18 120.1 9.5 80 307-390 7-86 (89)
113 1x4e_A RNA binding motif, sing 99.5 8.6E-15 2.9E-19 122.0 4.3 77 309-386 3-83 (85)
114 2i2y_A Fusion protein consists 99.5 2.5E-14 8.6E-19 131.8 7.8 80 308-389 70-149 (150)
115 2fc9_A NCL protein; structure 99.5 6.3E-14 2.2E-18 120.5 9.7 79 308-390 12-93 (101)
116 2m2b_A RNA-binding protein 10; 99.5 1E-14 3.5E-19 132.2 4.8 80 309-390 21-110 (131)
117 2cqh_A IGF-II mRNA-binding pro 99.5 3E-14 1E-18 120.8 7.4 80 308-391 5-86 (93)
118 2xnq_A Nuclear polyadenylated 99.5 1E-13 3.5E-18 119.8 10.7 78 308-389 19-96 (97)
119 2cpx_A Hypothetical protein FL 99.5 3.9E-14 1.3E-18 124.3 7.6 82 309-391 23-108 (115)
120 2cpd_A Apobec-1 stimulating pr 99.5 1.5E-13 5.2E-18 117.9 11.1 78 308-390 12-91 (99)
121 4f02_A Polyadenylate-binding p 99.5 4.1E-14 1.4E-18 137.4 8.4 81 310-391 102-184 (213)
122 2j8a_A Histone-lysine N-methyl 99.5 1.2E-13 4.2E-18 128.2 10.9 75 312-386 3-94 (136)
123 1wg1_A KIAA1579 protein, homol 99.5 9.6E-14 3.3E-18 117.1 9.3 77 309-389 3-79 (88)
124 2bz2_A Negative elongation fac 99.5 5.4E-14 1.8E-18 126.9 7.9 78 309-391 37-114 (121)
125 1fjc_A Nucleolin RBD2, protein 99.5 8.1E-14 2.8E-18 118.6 8.4 80 309-390 14-93 (96)
126 1wg5_A Heterogeneous nuclear r 99.5 9E-14 3.1E-18 121.2 8.8 79 309-389 13-95 (104)
127 2cq2_A Hypothetical protein LO 99.5 8.9E-14 3E-18 125.9 9.0 79 309-389 23-107 (114)
128 1wf1_A RNA-binding protein RAL 99.5 8.1E-14 2.8E-18 122.0 8.4 76 309-389 25-101 (110)
129 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.1E-13 3.8E-18 130.0 9.9 83 309-392 70-156 (165)
130 2db1_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 125.0 8.0 78 309-388 15-98 (118)
131 2lea_A Serine/arginine-rich sp 99.5 4E-14 1.4E-18 129.8 6.3 82 309-391 45-130 (135)
132 2hgl_A HNRPF protein, heteroge 99.5 5.8E-14 2E-18 130.1 7.3 79 308-388 41-125 (136)
133 1x5o_A RNA binding motif, sing 99.5 1.6E-13 5.6E-18 120.4 9.7 79 309-388 23-112 (114)
134 1fj7_A Nucleolin RBD1, protein 99.5 2.5E-14 8.4E-19 123.1 4.3 80 309-391 15-98 (101)
135 2kvi_A Nuclear polyadenylated 99.5 7.3E-14 2.5E-18 119.7 7.2 79 309-391 8-86 (96)
136 3tyt_A Heterogeneous nuclear r 99.5 1.9E-13 6.4E-18 133.6 10.8 80 309-389 2-81 (205)
137 2dnn_A RNA-binding protein 12; 99.5 1.8E-13 6.2E-18 122.0 9.6 76 310-388 15-93 (109)
138 2e44_A Insulin-like growth fac 99.5 1.1E-13 3.7E-18 117.8 7.7 80 309-389 13-93 (96)
139 1wf0_A TDP-43, TAR DNA-binding 99.4 1.4E-13 4.7E-18 115.8 8.1 78 309-390 3-80 (88)
140 1wez_A HnRNP H', FTP-3, hetero 99.4 9.7E-14 3.3E-18 121.4 7.1 79 308-389 12-93 (102)
141 1iqt_A AUF1, heterogeneous nuc 99.4 4.4E-14 1.5E-18 114.8 4.3 71 313-385 1-75 (75)
142 2xs2_A Deleted in azoospermia- 99.4 8.7E-14 3E-18 119.8 6.4 79 310-391 8-89 (102)
143 3q2s_C Cleavage and polyadenyl 99.4 7.5E-14 2.6E-18 139.0 6.8 79 310-389 67-151 (229)
144 2hzc_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 112.3 9.1 72 309-384 4-86 (87)
145 1wel_A RNA-binding protein 12; 99.4 6.4E-14 2.2E-18 125.6 4.8 80 308-389 22-105 (124)
146 3egn_A RNA-binding protein 40; 99.4 2.2E-13 7.4E-18 124.6 8.1 83 309-392 43-134 (143)
147 2fc8_A NCL protein; structure 99.4 3.2E-13 1.1E-17 116.1 8.6 79 309-391 13-95 (102)
148 2e5g_A U6 snRNA-specific termi 99.4 5.7E-13 1.9E-17 113.5 10.0 79 309-390 6-84 (94)
149 2lcw_A RNA-binding protein FUS 99.1 1.4E-14 4.8E-19 128.1 0.0 81 309-390 5-97 (116)
150 1sjr_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 129.6 9.2 79 310-389 45-125 (164)
151 2pe8_A Splicing factor 45; RRM 99.4 5.2E-13 1.8E-17 118.2 9.9 79 309-387 6-93 (105)
152 1fxl_A Paraneoplastic encephal 99.4 5.6E-13 1.9E-17 121.3 10.3 79 310-389 1-83 (167)
153 2dit_A HIV TAT specific factor 99.4 6.1E-13 2.1E-17 117.6 10.1 83 308-390 12-104 (112)
154 2lmi_A GRSF-1, G-rich sequence 99.4 9.3E-14 3.2E-18 121.7 4.8 79 308-388 8-92 (107)
155 1b7f_A Protein (SXL-lethal pro 99.4 5E-13 1.7E-17 122.2 9.8 79 310-389 2-84 (168)
156 3md3_A Nuclear and cytoplasmic 99.4 7.1E-13 2.4E-17 120.4 10.3 79 308-387 84-166 (166)
157 4f02_A Polyadenylate-binding p 99.4 6.2E-13 2.1E-17 129.0 10.2 79 310-389 14-96 (213)
158 3md3_A Nuclear and cytoplasmic 99.4 5.3E-13 1.8E-17 121.3 8.9 77 312-389 1-80 (166)
159 2f3j_A RNA and export factor b 99.4 5.9E-13 2E-17 127.7 9.3 82 307-389 84-168 (177)
160 2cjk_A Nuclear polyadenylated 99.4 4.2E-13 1.4E-17 122.9 7.7 78 310-389 86-167 (167)
161 2dha_A FLJ20171 protein; RRM d 99.4 2.7E-13 9.3E-18 123.5 5.8 78 309-388 21-105 (123)
162 3beg_B Splicing factor, argini 99.4 3.6E-13 1.2E-17 119.7 6.5 74 310-387 15-93 (115)
163 1l3k_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 122.9 10.2 83 309-393 102-188 (196)
164 3zzy_A Polypyrimidine tract-bi 99.4 1.7E-12 6E-17 120.0 10.5 77 311-389 28-107 (130)
165 2hgn_A Heterogeneous nuclear r 99.4 2.3E-13 7.7E-18 126.6 4.5 80 309-391 44-126 (139)
166 2yh0_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 123.4 9.1 81 309-390 112-196 (198)
167 2g4b_A Splicing factor U2AF 65 99.4 9.7E-13 3.3E-17 121.1 8.5 76 309-385 92-171 (172)
168 2qfj_A FBP-interacting repress 99.4 1.1E-12 3.7E-17 125.1 9.0 80 309-389 123-206 (216)
169 2dnl_A Cytoplasmic polyadenyla 99.4 2.1E-12 7.2E-17 114.3 10.0 75 309-387 6-87 (114)
170 1l3k_A Heterogeneous nuclear r 99.4 1.8E-12 6.2E-17 121.7 10.1 79 309-389 11-93 (196)
171 2qfj_A FBP-interacting repress 99.4 1.4E-12 4.8E-17 124.3 9.2 83 310-393 27-113 (216)
172 2e5i_A Heterogeneous nuclear r 99.3 2.2E-12 7.4E-17 118.2 9.6 74 313-389 27-103 (124)
173 2hgm_A HNRPF protein, heteroge 99.3 8.3E-13 2.8E-17 121.1 6.5 77 309-388 40-121 (126)
174 2adc_A Polypyrimidine tract-bi 99.3 1.5E-12 5.1E-17 127.7 8.5 80 308-388 31-110 (229)
175 3pgw_A U1-A; protein-RNA compl 99.3 3.3E-12 1.1E-16 127.8 11.0 81 308-389 6-91 (282)
176 2voo_A Lupus LA protein; RNA-b 99.3 3.1E-12 1.1E-16 124.1 10.3 76 310-387 108-186 (193)
177 3pgw_S U1-70K; protein-RNA com 99.3 2.5E-12 8.6E-17 139.6 10.5 83 309-392 100-186 (437)
178 1qm9_A Polypyrimidine tract-bi 99.3 1.3E-12 4.6E-17 123.7 6.8 79 310-389 2-80 (198)
179 1fje_B Nucleolin RBD12, protei 99.3 3.4E-12 1.2E-16 118.2 9.2 78 309-388 97-174 (175)
180 2d9o_A DNAJ (HSP40) homolog, s 99.3 7.3E-12 2.5E-16 110.4 10.7 79 309-390 8-92 (100)
181 3nmr_A Cugbp ELAV-like family 99.3 2.8E-12 9.7E-17 117.7 7.9 79 310-389 2-89 (175)
182 3smz_A Protein raver-1, ribonu 99.3 6.5E-12 2.2E-16 125.7 11.0 88 309-397 182-273 (284)
183 2cjk_A Nuclear polyadenylated 99.3 3.8E-12 1.3E-16 116.5 8.4 76 310-388 2-81 (167)
184 3pgw_A U1-A; protein-RNA compl 99.3 6.8E-12 2.3E-16 125.4 10.8 77 308-386 204-281 (282)
185 3nmr_A Cugbp ELAV-like family 99.3 3.4E-12 1.1E-16 117.2 7.7 76 309-385 93-174 (175)
186 1b7f_A Protein (SXL-lethal pro 99.3 4.9E-12 1.7E-16 115.6 8.4 76 309-385 87-168 (168)
187 3sde_A Paraspeckle component 1 99.3 3.8E-12 1.3E-16 127.4 8.0 78 310-388 95-179 (261)
188 2diu_A KIAA0430 protein; struc 99.3 7.8E-12 2.7E-16 110.2 8.0 77 308-391 6-87 (96)
189 1fxl_A Paraneoplastic encephal 99.3 7.3E-12 2.5E-16 113.9 7.9 76 309-385 86-167 (167)
190 3v4m_A Splicing factor U2AF 65 99.3 1.2E-11 4E-16 109.4 8.8 79 309-387 3-96 (105)
191 2ghp_A U4/U6 snRNA-associated 99.2 1.7E-11 5.8E-16 123.1 10.3 80 308-389 207-292 (292)
192 3s6e_A RNA-binding protein 39; 99.2 2.1E-11 7.1E-16 109.9 9.1 77 310-386 6-91 (114)
193 1jmt_A Splicing factor U2AF 35 99.2 1.1E-11 3.9E-16 109.2 7.1 59 327-385 41-103 (104)
194 2g4b_A Splicing factor U2AF 65 99.2 2.7E-11 9.1E-16 111.4 9.7 75 310-388 3-88 (172)
195 3sde_A Paraspeckle component 1 99.2 2.2E-11 7.5E-16 121.8 9.7 78 309-389 20-97 (261)
196 2yh0_A Splicing factor U2AF 65 99.2 3.1E-11 1.1E-15 113.5 9.5 76 310-389 3-89 (198)
197 3ue2_A Poly(U)-binding-splicin 99.2 3.4E-11 1.2E-15 109.0 8.2 78 310-387 19-108 (118)
198 2adc_A Polypyrimidine tract-bi 99.2 3.6E-11 1.2E-15 117.8 8.9 78 309-388 149-228 (229)
199 1fje_B Nucleolin RBD12, protei 99.2 1.6E-11 5.5E-16 113.6 5.9 81 308-390 10-93 (175)
200 1qm9_A Polypyrimidine tract-bi 99.2 2.4E-11 8.3E-16 115.1 6.8 78 309-388 118-197 (198)
201 3smz_A Protein raver-1, ribonu 99.2 7E-11 2.4E-15 118.2 10.2 80 309-389 93-176 (284)
202 3tht_A Alkylated DNA repair pr 99.2 5.5E-11 1.9E-15 125.9 9.8 77 308-386 15-97 (345)
203 2ghp_A U4/U6 snRNA-associated 99.1 7.5E-11 2.6E-15 118.5 9.1 80 310-390 116-199 (292)
204 3tyt_A Heterogeneous nuclear r 99.1 4.7E-11 1.6E-15 116.6 6.9 76 309-385 121-204 (205)
205 2dnr_A Synaptojanin-1; RRM dom 98.8 1E-08 3.5E-13 89.6 9.5 76 308-388 4-86 (91)
206 3dxb_A Thioredoxin N-terminall 98.6 3.4E-08 1.2E-12 96.2 5.8 64 324-387 141-212 (222)
207 1ufw_A Synaptojanin 2; RNP dom 98.5 1E-07 3.4E-12 83.9 6.7 74 307-385 11-92 (95)
208 1owx_A Lupus LA protein, SS-B, 98.4 5.7E-07 1.9E-11 82.3 9.1 80 309-390 16-98 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.1 0.0017 5.8E-08 58.8 8.7 73 311-386 21-98 (117)
210 2dhx_A Poly (ADP-ribose) polym 96.9 0.004 1.4E-07 55.6 9.5 75 309-389 6-85 (104)
211 1wwh_A Nucleoporin 35, nucleop 96.5 0.0072 2.4E-07 55.2 8.4 71 312-388 25-97 (119)
212 2rhk_C Cleavage and polyadenyl 95.9 0.0014 4.9E-08 54.5 0.3 24 191-214 15-38 (72)
213 3p3d_A Nucleoporin 53; structu 95.8 0.0093 3.2E-07 55.3 5.2 69 314-386 11-97 (132)
214 2d9n_A Cleavage and polyadenyl 95.8 0.004 1.4E-07 52.2 2.5 24 191-214 9-32 (77)
215 1i2t_A HYD protein; four alpha 95.6 0.0066 2.3E-07 49.3 3.1 51 8-61 7-57 (61)
216 2d9m_A Zinc finger CCCH-type d 95.5 0.003 1E-07 52.5 0.8 23 192-214 20-42 (69)
217 1wey_A Calcipressin 1; structu 95.5 0.025 8.5E-07 50.5 6.5 75 311-387 5-83 (104)
218 1m9o_A Tristetraproline; Cys3H 95.3 0.0095 3.3E-07 49.2 3.2 25 190-214 10-35 (77)
219 2cqe_A KIAA1064 protein; CCCH 95.3 0.0055 1.9E-07 53.8 1.6 22 193-214 14-35 (98)
220 3d2q_A Muscleblind-like protei 95.0 0.0057 1.9E-07 50.4 0.9 22 193-214 7-29 (70)
221 3kuj_A Polyadenylate-binding p 95.0 0.024 8.1E-07 49.3 4.7 51 9-62 27-77 (88)
222 1nmr_A Poly(A)-binding protein 95.0 0.0098 3.4E-07 51.3 2.3 52 8-62 29-80 (85)
223 2cqe_A KIAA1064 protein; CCCH 94.7 0.0082 2.8E-07 52.7 1.2 23 192-214 36-59 (98)
224 2dyd_A Poly(A)-binding protein 94.7 0.012 4E-07 50.8 2.1 52 8-62 28-79 (85)
225 1m9o_A Tristetraproline; Cys3H 94.4 0.007 2.4E-07 50.0 0.0 23 192-214 50-73 (77)
226 3d2q_A Muscleblind-like protei 94.3 0.01 3.5E-07 48.8 0.8 23 191-214 41-63 (70)
227 1ifw_A Polyadenylate-binding p 94.2 0.023 7.9E-07 49.7 2.8 52 8-62 26-79 (92)
228 3d2n_A Muscleblind-like protei 94.1 0.016 5.5E-07 49.6 1.6 22 193-214 10-32 (83)
229 3pq1_A Poly(A) RNA polymerase; 93.9 0.027 9.2E-07 61.9 3.4 57 310-369 52-108 (464)
230 2e5s_A Otthump00000018578; ZF- 93.4 0.017 5.8E-07 50.8 0.5 23 191-214 55-77 (98)
231 2kn4_A Immunoglobulin G-bindin 93.2 0.035 1.2E-06 50.6 2.3 32 341-372 2-35 (158)
232 2e5s_A Otthump00000018578; ZF- 92.9 0.012 4.2E-07 51.7 -1.1 22 193-214 21-43 (98)
233 2rpp_A Muscleblind-like protei 92.9 0.025 8.4E-07 49.1 0.7 22 193-214 18-40 (89)
234 1whv_A Poly(A)-specific ribonu 92.8 0.26 8.8E-06 43.7 7.1 55 310-370 15-69 (100)
235 1g9l_A Polyadenylate-binding p 92.7 0.05 1.7E-06 51.1 2.5 51 10-63 74-124 (144)
236 3d2n_A Muscleblind-like protei 91.9 0.041 1.4E-06 47.1 0.8 23 191-214 42-64 (83)
237 2d9n_A Cleavage and polyadenyl 91.7 0.04 1.4E-06 46.1 0.6 22 192-214 38-60 (77)
238 2rhk_C Cleavage and polyadenyl 91.2 0.044 1.5E-06 45.5 0.3 22 192-214 44-66 (72)
239 3ctr_A Poly(A)-specific ribonu 91.1 0.2 6.8E-06 44.5 4.4 54 312-371 7-60 (101)
240 2i2y_A Fusion protein consists 88.6 0.09 3.1E-06 47.7 0.2 40 348-388 11-51 (150)
241 2rpp_A Muscleblind-like protei 87.7 0.12 4.1E-06 44.8 0.4 23 191-214 50-72 (89)
242 1uw4_A UPF3X; nonsense mediate 85.5 2.3 7.9E-05 36.8 7.3 65 312-377 2-72 (91)
243 2fc6_A Nuclear, target of EGR1 71.7 0.88 3E-05 35.5 0.2 25 190-214 18-43 (50)
244 3d45_A Poly(A)-specific ribonu 64.8 9.6 0.00033 42.1 6.8 56 310-371 439-494 (507)
245 2l08_A Regulator of nonsense t 56.4 21 0.00073 31.2 6.1 66 311-377 9-80 (97)
246 2g0c_A ATP-dependent RNA helic 48.2 25 0.00084 28.3 4.9 69 313-386 2-75 (76)
247 3u9g_A Zinc finger CCCH-type a 29.6 15 0.00053 36.8 1.0 24 191-214 88-115 (229)
248 3dve_B Voltage-dependent N-typ 28.5 11 0.00037 25.0 -0.2 14 21-34 1-14 (23)
249 3dvk_B Voltage-dependent R-typ 26.2 13 0.00043 24.7 -0.2 14 21-34 2-15 (23)
250 3bee_A Putative YFRE protein; 24.0 1.3E+02 0.0046 24.7 5.8 57 4-60 25-92 (93)
251 3gp4_A Transcriptional regulat 20.9 76 0.0026 28.9 3.8 14 461-474 129-142 (142)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.87 E-value=7.9e-23 Score=206.62 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCCCCCceEEEeCCCCCCC---------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE
Q 041390 305 GSMNPSARQIYLTFPADSTF---------REEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFV 375 (639)
Q Consensus 305 G~~~~~sr~IYV~~~~d~~~---------TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L 375 (639)
|......++|||+++.. .+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++|++.|++..|
T Consensus 128 gs~~~~~rtLfVgnL~~-~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 128 GSFRKKNKTLYVGGIDG-ALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp ---CCCCCEEEEECTTG-GGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CccccCCceeecCCCCh-hhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 34466889999997654 55 7999999999999999999998 899999999999999999999999999
Q ss_pred ------------cCeEEEEEecccCCcch
Q 041390 376 ------------CDSRVLVKPYKEKGKVQ 392 (639)
Q Consensus 376 ------------~GR~I~Vk~a~~K~k~~ 392 (639)
.|+.|.|+|+.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC------
T ss_pred eccccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998765443
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=8.9e-17 Score=142.86 Aligned_cols=84 Identities=18% Similarity=0.363 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
..+++|||++++. ++||++|+++|++||+|.+|+|+.| .+||||||+|.+.++|++|++.||++.|+|++|.|.+++
T Consensus 3 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 3 LGSGNIFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp --CCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCCEEEECCCCC-CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3567899997765 8999999999999999999999986 679999999999999999999999999999999999998
Q ss_pred cCCcchH
Q 041390 387 EKGKVQE 393 (639)
Q Consensus 387 ~K~k~~~ 393 (639)
.+..+..
T Consensus 82 ~~~~~~~ 88 (115)
T 4f25_A 82 SRKEREA 88 (115)
T ss_dssp CCCC---
T ss_pred Ccccccc
Confidence 7765443
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=140.11 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=73.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
+..++|||++++ +++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~nL~-~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLN-DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCC-CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999666 58999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+..+.+
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 965543
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=137.98 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|++|.|.+
T Consensus 17 ~~gt~lfV~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQ-NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899997765 8999999999999999999999875 7899999999999999999999999999999999999
Q ss_pred ccc
Q 041390 385 YKE 387 (639)
Q Consensus 385 a~~ 387 (639)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=135.64 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=72.0
Q ss_pred CceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEe
Q 041390 311 ARQIYLTFPADSTFREEDVSNYFSIYG-PVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKG-NPHFVCDSRVLVKP 384 (639)
Q Consensus 311 sr~IYV~~~~d~~~TEedLre~FsqFG-~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~m-ng~~L~GR~I~Vk~ 384 (639)
+++|||++++. ++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.| ++..|+|++|.|.+
T Consensus 1 S~~i~v~nLp~-~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQ-AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCS-SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCC-CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 57899997765 899999999999999 8999999985 78999999999999999999987 46689999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9877654
No 6
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=1.1e-15 Score=127.00 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=72.5
Q ss_pred CCCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 306 SMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 306 ~~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
......++|||++++. ++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|++|.
T Consensus 2 ~~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGLAE-EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECCCT-TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCC-CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3456789999997765 8999999999999999999999875 6899999999999999999999999999999999
Q ss_pred EEecc
Q 041390 382 VKPYK 386 (639)
Q Consensus 382 Vk~a~ 386 (639)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=129.07 Aligned_cols=82 Identities=26% Similarity=0.450 Sum_probs=74.9
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. ++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 5 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSY-TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999996665 8999999999999999999999875 689999999999999999999999999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987754
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2e-15 Score=124.82 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=71.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
.+|||++++. ++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 2 ~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNV-NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCT-TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899997665 8999999999999999999999875 6799999999999999999999999999999999999987
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=126.45 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..++|++|.|.+
T Consensus 4 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSP-EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCC-CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3578999997665 7999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cccC
Q 041390 385 YKEK 388 (639)
Q Consensus 385 a~~K 388 (639)
+++|
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9765
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-15 Score=125.70 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=72.8
Q ss_pred CCCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 306 SMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 306 ~~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
...+..++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.
T Consensus 11 ~~~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPF-SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCT-TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456789999997664 8999999999999999999999875 6799999999999999999999999999999999
Q ss_pred EEecc
Q 041390 382 VKPYK 386 (639)
Q Consensus 382 Vk~a~ 386 (639)
|.+++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 11
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=4.5e-15 Score=126.84 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred CceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 311 ARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 311 sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
+++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPY-DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 58999997654 8999999999999999999999875 679999999999999999999999999999999999998
Q ss_pred cCCcchH
Q 041390 387 EKGKVQE 393 (639)
Q Consensus 387 ~K~k~~~ 393 (639)
++.....
T Consensus 81 ~~~~~~~ 87 (96)
T 2x1f_A 81 NSDISGV 87 (96)
T ss_dssp CSSGGGH
T ss_pred CCCCCCc
Confidence 8876544
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=129.58 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=75.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 9 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAE-EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCS-SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45789999997665 8999999999999999999999875 689999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=128.33 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=74.7
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+.+ .+||||||+|.+.++|++|++.||+..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSR-DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCT-TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCc-cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 35678999997665 8999999999999999999999986 67899999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 77654
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5e-15 Score=127.86 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=75.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.+ .++|||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPF-RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCT-TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45679999997655 8999999999999999999999986 67999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
..+...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 877544
No 15
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=124.63 Aligned_cols=79 Identities=11% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccC-----CCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQ-----KRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~Dk-----sRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
..++|||++++. ++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..|+|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTR-NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 468999997665 89999999999999999999998863 899999999999999999999999999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86553
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=128.66 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ ||++.|+|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPH-NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCS-SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45778999996654 8999999999999999999999875 689999999999999999999 79999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99877543
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=127.43 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
+..++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 3 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHF-NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCT-TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999996665 8999999999999999999999885 6799999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
++++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 18
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=129.48 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=75.3
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.....++|||++++. .+||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 18 ~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPP-DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345778999997765 8999999999999999999999876 67999999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 77654
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.1e-15 Score=127.14 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDV-RIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dV-rIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||++++. .+|+++|+++|++||+|.+| +|+.+ +++|||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 3 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDP-EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCT-TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999996665 89999999999999999999 99875 689999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=128.00 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 15 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPF-SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCT-TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4678999996665 8999999999999999999999885 67899999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87754
No 21
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=135.07 Aligned_cols=83 Identities=11% Similarity=0.082 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN--PHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mn--g~~L~GR~I~Vk~a 385 (639)
+...++|||++++. ++||++|+++|++||+|++|+|++ .||||||+|++.++|++|++.|+ +..|+|++|+|.++
T Consensus 13 ~~~~~~LfV~nLp~-~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPI-DVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCT-TSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45788999996654 899999999999999999999998 58999999999999999999765 58999999999999
Q ss_pred ccCCcchH
Q 041390 386 KEKGKVQE 393 (639)
Q Consensus 386 ~~K~k~~~ 393 (639)
+.+.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 87765543
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=128.45 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=74.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSE-DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCT-TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999996665 8999999999999999999999875 6789999999999999999999999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 23
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=128.85 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=74.8
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDE-KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999996654 8999999999999999999999885 689999999999999999999999999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++.+
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987654
No 24
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=4e-15 Score=129.52 Aligned_cols=76 Identities=7% Similarity=0.053 Sum_probs=70.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
+..+.-|||+++. +.+||++|+++|.+||+|.+|+|.. +||||||+|.+.++|++|++.||+..|.||+|+|+.|.
T Consensus 4 ~~~~~wL~VgNL~-~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNLT-AQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECCC-TTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCCC-ccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4567789999554 5999999999999999999999988 99999999999999999999999999999999999994
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=5.1e-15 Score=130.24 Aligned_cols=82 Identities=13% Similarity=0.260 Sum_probs=74.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSP-EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4678999996654 8999999999999999999999875 6789999999999999999999999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++.+...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877644
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=125.81 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-------QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
...++|||++++. ++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.
T Consensus 3 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNF-STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4678999997665 8999999999999999999999864 4689999999999999999999999999999999
Q ss_pred EEecccCCc
Q 041390 382 VKPYKEKGK 390 (639)
Q Consensus 382 Vk~a~~K~k 390 (639)
|.+++++.+
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999977654
No 27
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=5e-15 Score=132.74 Aligned_cols=82 Identities=11% Similarity=-0.016 Sum_probs=72.8
Q ss_pred CCCCCCceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 306 SMNPSARQIYLTFPADSTFREEDVSNYFSIYG-PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 306 ~~~~~sr~IYV~~~~d~~~TEedLre~FsqFG-~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...+..++|||++++ +++|+++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|++|.|++
T Consensus 23 ~~p~~~~~l~VgnLp-~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 23 KLPAKRYRITMKNLP-EGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp --CCCCEEEEEECSS-CCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEECCC-CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344567899999665 5899999999999999 99999998777999999999999999999999999999999999999
Q ss_pred cccC
Q 041390 385 YKEK 388 (639)
Q Consensus 385 a~~K 388 (639)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 28
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=3.7e-15 Score=131.33 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
.+..++|||++++. ++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 22 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQ-EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCS-SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999997665 8999999999999999999999875 678999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99877543
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.9e-15 Score=128.60 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCC------CeEEcC
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGN------PHFVCD 377 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mn------g~~L~G 377 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|| +..|+|
T Consensus 12 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSF-DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34678999996665 8999999999999999999999976 689999999999999999999999 999999
Q ss_pred eEEEEEecccCCcc
Q 041390 378 SRVLVKPYKEKGKV 391 (639)
Q Consensus 378 R~I~Vk~a~~K~k~ 391 (639)
++|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999877543
No 30
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.1e-15 Score=125.54 Aligned_cols=81 Identities=9% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVS----NYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLr----e~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||++++ +.++|++|+ ++|++||+|.+|+|+.+ ..||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 7 ~~~~~l~V~nL~-~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNID-YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCC-TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356799999666 489999999 99999999999999986 339999999999999999999999999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9977653
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-15 Score=124.29 Aligned_cols=79 Identities=25% Similarity=0.264 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 12 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSL-YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCS-SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45788999997665 7999999999999999999999875 678999999999999999999999999999999999
Q ss_pred eccc
Q 041390 384 PYKE 387 (639)
Q Consensus 384 ~a~~ 387 (639)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=128.93 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=74.9
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. ++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 9 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSF-DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCT-TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45789999997664 8999999999999999999999885 689999999999999999999999999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9977654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=131.10 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCC--eeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCe----EEcCeE
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGP--VHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPH----FVCDSR 379 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~--V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~----~L~GR~ 379 (639)
.-.+|||++++. ++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|+||+
T Consensus 8 ~m~tlfV~nL~~-~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAP-HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCT-TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCC-cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 456899997665 8999999999999995 779999986 78999999999999999999999875 699999
Q ss_pred EEEEeccc
Q 041390 380 VLVKPYKE 387 (639)
Q Consensus 380 I~Vk~a~~ 387 (639)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 34
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=124.20 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++ +++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.||+..|+|++|.|.+++++
T Consensus 13 ~~~~~l~V~n---~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEEC---SSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcC---CCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4578999997 3799999999999999999999975 9999999999999999999999999999999999999776
Q ss_pred Cc
Q 041390 389 GK 390 (639)
Q Consensus 389 ~k 390 (639)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=8e-15 Score=128.02 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 24 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHE-EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCT-TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4678999997665 8999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+..+..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 36
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.6e-15 Score=130.07 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=74.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. ++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 26 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPF-RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCT-TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCC-cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35678999997665 8999999999999999999999876 67999999999999999999999999999999999999
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
+++.
T Consensus 105 ~~~~ 108 (109)
T 2err_A 105 TARV 108 (109)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 8763
No 37
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=121.31 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEecc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG-NPHFVCDSRVLVKPYK 386 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~m-ng~~L~GR~I~Vk~a~ 386 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.| ++..++|++|.|.+++
T Consensus 9 ~~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGD-TITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTT-TSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCC-CCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 35678999997665 899999999999999999999998 7999999999999999999999 9999999999999874
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=125.01 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++. .+++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEA-RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34678999996665 8999999999999999999999885 6799999999999999999999999999999999999
Q ss_pred ccc
Q 041390 385 YKE 387 (639)
Q Consensus 385 a~~ 387 (639)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 853
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=128.63 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 21 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHE-EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4578999996665 8999999999999999999999875 6699999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 40
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.6e-15 Score=127.65 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
+..++|||++++. ++++++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|++|.|.++++|
T Consensus 25 ~~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPH-FATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCT-TCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCc-ccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 4568999997765 899999999999999999999996 8999999999999999999999999999999999998764
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=4.4e-15 Score=125.27 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPF-DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCT-TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35678999997664 8999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 77653
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=127.70 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=75.7
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDD-GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCT-TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34788999996665 8999999999999999999999976 78999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
+++.++
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 877643
No 43
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.7e-15 Score=126.64 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=74.3
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
.....++|||++++ +.+|+++|+++|++||+|. ++|+.+++||||||+|.+.++|++|++.||+..|+|++|.|.+++
T Consensus 15 ~~~~~~~l~V~nL~-~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLP-RDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCC-TTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCC-CcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34567899999665 4899999999999999997 888888999999999999999999999999999999999999998
Q ss_pred cCCc
Q 041390 387 EKGK 390 (639)
Q Consensus 387 ~K~k 390 (639)
++.+
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 44
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=8.1e-15 Score=129.89 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCe--EEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPH--FVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~--~L~GR~I~Vk~a 385 (639)
.+.+++|||++++. ++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.|++. .|.||+|+|.++
T Consensus 18 ~~ps~~l~V~NLp~-~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLID-GVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 45789999997765 899999999999999999999997 8999999999999999999998765 488999999999
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 7764
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=5.9e-15 Score=127.59 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=74.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcC---eEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCD---SRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G---R~I~V 382 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+.| ++|.|
T Consensus 13 ~~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNK-QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 4678999997654 8999999999999999999999986 669999999999999999999999999998 99999
Q ss_pred EecccCCcc
Q 041390 383 KPYKEKGKV 391 (639)
Q Consensus 383 k~a~~K~k~ 391 (639)
.+++.+..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=127.95 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=73.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 11 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTY-RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCT-TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4678999996665 8999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 976643
No 47
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=1.2e-14 Score=121.68 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=70.5
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. ++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .||+..|+|++|.|.++
T Consensus 5 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDY-GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCT-TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 357999997665 8999999999999999999999875 67999999999999999999 89999999999999998
Q ss_pred ccC
Q 041390 386 KEK 388 (639)
Q Consensus 386 ~~K 388 (639)
+++
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=7.2e-15 Score=125.09 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=75.7
Q ss_pred CCCCceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVS----NYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLr----e~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
.+.+++|||++++. ++++++|+ ++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.||+..++|++|.|
T Consensus 5 ~~~~~~l~V~nLp~-~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNE-KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCT-TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 35678999997664 89999999 99999999999999853 68999999999999999999999999999999999
Q ss_pred EecccCCcchH
Q 041390 383 KPYKEKGKVQE 393 (639)
Q Consensus 383 k~a~~K~k~~~ 393 (639)
.+++++.+...
T Consensus 84 ~~a~~~~~~~~ 94 (97)
T 1nu4_A 84 QYAKTDSDIIA 94 (97)
T ss_dssp EECSSCCTHHH
T ss_pred EEccCCCcccc
Confidence 99988765543
No 49
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=1.3e-15 Score=132.09 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCceEEEeCCCCC------CCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC-e
Q 041390 310 SARQIYLTFPADS------TFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCD-S 378 (639)
Q Consensus 310 ~sr~IYV~~~~d~------~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G-R 378 (639)
.+++|||++++ + ++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|.| +
T Consensus 5 ~~~~vfV~nLp-~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAP-VIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCC-CCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCC-cCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 46899999665 6 7899999999999999999999975 689999999999999999999999999999 9
Q ss_pred EEEEEecccCC
Q 041390 379 RVLVKPYKEKG 389 (639)
Q Consensus 379 ~I~Vk~a~~K~ 389 (639)
.|.|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997653
No 50
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.7e-14 Score=127.18 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++ +++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.+ ++.|+|+.|.|.+
T Consensus 23 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLS-WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESCC-TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 467899999765 48999999999999999999999875 67999999999999999999996 4999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
+..+..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9877543
No 51
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=129.62 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHH---HHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 041390 309 PSARQIYLTFPADSTFREEDVS---NYFSIYGPVHDVRIPYQ-------QKRMFGFVTFVYPETVKLILAKGNPHFVCDS 378 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLr---e~FsqFG~V~dVrIp~D-------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR 378 (639)
...++|||++++. +++|++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nLp~-~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQ-RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECT-TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCC-CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4578999996654 89999999 99999999999999875 4569999999999999999999999999999
Q ss_pred EEEEEecccCC
Q 041390 379 RVLVKPYKEKG 389 (639)
Q Consensus 379 ~I~Vk~a~~K~ 389 (639)
+|.|.+++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-15 Score=130.59 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
...++|||++++. ++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~-~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPT-DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCT-TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4568999996654 8999999999999999999999985 789999999999999999999 7999999999999987
Q ss_pred cc
Q 041390 386 KE 387 (639)
Q Consensus 386 ~~ 387 (639)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 53
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=127.16 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.+++ .|+|++|.|.
T Consensus 14 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPY-HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCS-SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 35678999996665 8999999999999999999999885 6899999999999999999999998 8999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
++..+.+
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 54
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=126.35 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=74.3
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-----QKRMFGFVTFVYPETVKLILAKG-NPHFVCDSRVL 381 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-----ksRGFGFVtF~~~E~Ae~Al~~m-ng~~L~GR~I~ 381 (639)
....++|||++++. .+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.| |+..|.|++|.
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPF-QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCC-cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 35678999997665 8999999999999999999999864 57999999999999999999999 99999999999
Q ss_pred EEecccCCc
Q 041390 382 VKPYKEKGK 390 (639)
Q Consensus 382 Vk~a~~K~k 390 (639)
|.+++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 55
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=126.97 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=71.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC--CCeEEcCeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG--NPHFVCDSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~m--ng~~L~GR~I~Vk~a~ 386 (639)
+.+++|||++++. ++||++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.| ++..|.|++|.|.+++
T Consensus 13 ~p~~~l~V~nLp~-~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKLPG-EVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESCCT-TCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4678999997664 899999999999999999999998 5999999999999999999976 5788999999999998
Q ss_pred cCCcc
Q 041390 387 EKGKV 391 (639)
Q Consensus 387 ~K~k~ 391 (639)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76543
No 56
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=132.07 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. ++||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 39 ~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPT-TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCST-TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35678999996654 8999999999999999999999875 569999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
+++++.++
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99877654
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=126.70 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
...++|||++++. ++++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDY-KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCT-TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4578999997665 8999999999999999999999886 67899999999999999999999999999999999998
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6543
No 58
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=136.99 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYG--PVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG--~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
..++|||++++ +++||++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++||+.||++.|+|++|.|.
T Consensus 54 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFS-WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCC-TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 46899999665 5899999999999999 9999999876 789999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 133 ~a~~~~~~ 140 (156)
T 3n9u_C 133 PATRQNLS 140 (156)
T ss_dssp ECCHHHHH
T ss_pred EcCCCcch
Confidence 99765433
No 59
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.2e-15 Score=131.00 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC--eEEcCeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNP--HFVCDSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng--~~L~GR~I~Vk~a~ 386 (639)
..+++|||++++..++||++|+++|++||+|.+|+|++ .||||||+|++.++|++|++.||+ ..|+||+|+|.+++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 36789999966543899999999999999999999998 679999999999999999998874 56999999999997
Q ss_pred cCC
Q 041390 387 EKG 389 (639)
Q Consensus 387 ~K~ 389 (639)
.+.
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=1.7e-15 Score=128.38 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=66.2
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYG--PVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG--~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.+|||++++ +++||++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 2 ~~l~V~nL~-~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLT-WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCC-TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCC-CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999665 4899999999999999 9999999886 78999999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
.++..
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 76643
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=122.52 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. ++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|++|.|.+++.
T Consensus 5 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPR-EATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCS-SCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 45678999997665 89999999999999999999998 59999999999999999999999999999999999987
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7e-15 Score=126.69 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 7 ~~~~l~V~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPY-EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCT-TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCC-cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 468999997664 8999999999999999999999875 56999999999999999999999999999999999999
Q ss_pred ccCCcch
Q 041390 386 KEKGKVQ 392 (639)
Q Consensus 386 ~~K~k~~ 392 (639)
..+....
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 8776543
No 63
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=7.9e-15 Score=127.00 Aligned_cols=82 Identities=13% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE---cCeEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFV---CDSRV 380 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L---~GR~I 380 (639)
....++|||++++. ++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+ .|++|
T Consensus 10 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPR-NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCT-TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 35678999997665 8999999999999999999999885 6899999999999999999999999988 89999
Q ss_pred EEEecccCCc
Q 041390 381 LVKPYKEKGK 390 (639)
Q Consensus 381 ~Vk~a~~K~k 390 (639)
.|.++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999977654
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=2.1e-14 Score=120.08 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|++|.|++
T Consensus 9 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSW-DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCT-TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 4678999997664 8999999999999999999999875 6799999999999999999976 88999999999987
Q ss_pred c
Q 041390 385 Y 385 (639)
Q Consensus 385 a 385 (639)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1e-14 Score=128.79 Aligned_cols=78 Identities=22% Similarity=0.421 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 37 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQ-EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCT-TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999997665 8999999999999999999999875 679999999999999999999999999999999999
Q ss_pred ecc
Q 041390 384 PYK 386 (639)
Q Consensus 384 ~a~ 386 (639)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 66
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=126.21 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=73.9
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+. .||||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 22 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIAS-GLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSS-CCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 45678999996665 899999999999999999999998 499999999999999999999999999999999999987
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=8.5e-15 Score=126.85 Aligned_cols=82 Identities=30% Similarity=0.441 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. |++.|+|++|.|.
T Consensus 13 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGLDW-STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSCCT-TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 45778999996654 8999999999999999999999885 6789999999999999999999 9999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99877654
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=124.28 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCee-EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE---
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVH-DVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSR--- 379 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~-dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~--- 379 (639)
....++|||++++. +++|++|+++|++||+|. +|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEP-YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCT-TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCC-CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 45689999997765 899999999999999999 9999876 67899999999999999999999999999999
Q ss_pred -EEEEecccCC
Q 041390 380 -VLVKPYKEKG 389 (639)
Q Consensus 380 -I~Vk~a~~K~ 389 (639)
|.|.+++...
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=128.96 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=74.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
...++|||++++. ++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 5 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNR-ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTT-TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3568999996665 8999999999999999999999985 68899999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 70
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=123.00 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc--CeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVC--DSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~--GR~I~Vk~a 385 (639)
....++|||++++. .+||++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||+..|. |++|.|.++
T Consensus 14 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGP-NTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCS-SCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34678999996665 799999999999999999999998 5899999999999999999999999999 999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87754
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=126.97 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=74.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCee--------EEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVH--------DVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVC 376 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~--------dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~ 376 (639)
...++|||++++ +.+|+++|+++|++||.|. .|+|+.+ ++||||||+|.+.++|++|++.||++.|.
T Consensus 13 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLN-DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCC-TTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 467899999766 5899999999999999999 6999875 77999999999999999999999999999
Q ss_pred CeEEEEEecccCCcc
Q 041390 377 DSRVLVKPYKEKGKV 391 (639)
Q Consensus 377 GR~I~Vk~a~~K~k~ 391 (639)
|++|.|.+++.+...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999877643
No 72
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=125.08 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=73.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++.||++.|.|++|.|.++++
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 12 FTQRSRLFVGNLPP-DITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCTTEEEEESCCT-TCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 35678999997765 899999999999999999999998 799999999999999999999999999999999999977
Q ss_pred CCc
Q 041390 388 KGK 390 (639)
Q Consensus 388 K~k 390 (639)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 73
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.8e-14 Score=123.48 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=71.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-----eEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCD-----SRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~G-----R~I~Vk 383 (639)
...++|||++++ +++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.||+..|+| +.|.|.
T Consensus 13 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLP-PSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCC-SSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 457899999766 58999999999999999999999985 999999999999999999999999999 999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987654
No 74
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-15 Score=133.83 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=74.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVS----NYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLr----e~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||++++ +++++++|+ ++|++||+|.+|.|+.. ++||||||+|.+.++|++|++.||+..|.|++|.|.
T Consensus 27 ~p~~~LfV~nL~-~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNIN-PEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCC-TTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 457899999666 589999876 69999999999999764 899999999999999999999999999999999999
Q ss_pred ecccCCcchH
Q 041390 384 PYKEKGKVQE 393 (639)
Q Consensus 384 ~a~~K~k~~~ 393 (639)
+++.+.....
T Consensus 106 ~a~~~~~~~~ 115 (127)
T 2a3j_A 106 FSETPQSQVA 115 (127)
T ss_dssp ECCCCCHHHH
T ss_pred EccCcchhcc
Confidence 9988765443
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.5e-14 Score=123.72 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .++|++|+++|++|| |.+|+|+++ ++||||||+|.+.++|++|+ .||+..|.|++|.|.
T Consensus 12 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPF-NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCT-TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCC-CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 35678999996654 899999999999997 999999976 57999999999999999999 899999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 76
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=128.29 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
.+..++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 23 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHF-NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCS-SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45678999997765 8999999999999999999999875 678999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1e-14 Score=128.33 Aligned_cols=78 Identities=23% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+ .||++.|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAA-RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCT-TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3568999996654 8999999999999999999999875 68999999999999999999 8899999999999999
Q ss_pred cccC
Q 041390 385 YKEK 388 (639)
Q Consensus 385 a~~K 388 (639)
++.+
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8654
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=2.7e-14 Score=123.81 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDF-GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35688999996654 8999999999999999999999975 7899999999999999999999999999999999998
Q ss_pred cc
Q 041390 385 YK 386 (639)
Q Consensus 385 a~ 386 (639)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 79
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=126.06 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. ++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|++|.|.++
T Consensus 26 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSF-ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTT-CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 468999996654 8999999999999999999999885 6799999999999999999999 999999999999999
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
.++.+.
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877643
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=123.45 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=71.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||++++ +++|+++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .||+..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLP-YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCC-SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCCC-CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 467899999665 4899999999999999 999999875 56999999999999999999 899999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=128.15 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
.....++|||++++. .+|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|.|++|.|
T Consensus 59 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 59 SATTKRVLYVGGLAE-EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SCSSCCEEEEECCCT-TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCcEEEEEeCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345789999997765 8999999999999999999999875 68999999999999999999999999999999999
Q ss_pred Eec
Q 041390 383 KPY 385 (639)
Q Consensus 383 k~a 385 (639)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 82
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.1e-14 Score=132.57 Aligned_cols=81 Identities=26% Similarity=0.254 Sum_probs=74.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 43 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSL-YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTT-SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999996665 8999999999999999999999875 789999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
+++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998765
No 83
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.7e-14 Score=119.56 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=71.6
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. ++|+++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||++.|+|++|.|.++++
T Consensus 7 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISP-TCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCS-SCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 35678999996654 899999999999999999999986 6999999999999999999999999999999999987
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=126.45 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCceEEEeCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EE
Q 041390 310 SARQIYLTFPADSTF------REEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDS-RV 380 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~------TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR-~I 380 (639)
..++|||++++. .+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|++.||+..|+|+ +|
T Consensus 14 ~~~~l~V~nLp~-~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQ-VGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCC-CCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCc-chhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 468999997764 66 78999999999999999999853 7899999999999999999999999999999 99
Q ss_pred EEEecccCCc
Q 041390 381 LVKPYKEKGK 390 (639)
Q Consensus 381 ~Vk~a~~K~k 390 (639)
.|.++.+..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999976543
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=1.3e-14 Score=127.69 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
...++|||++++ +.+|+++|+++|++||.|.+|+|+.+ .++|||||+|.+.++|++|++.||+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLP-YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999765 48999999999999999999999886 7899999999999999999999999999999999999975
Q ss_pred C
Q 041390 388 K 388 (639)
Q Consensus 388 K 388 (639)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 86
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=123.29 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=72.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++ +++++++|+++|++||.|.+|+++.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 12 ~~~~~~l~v~nLp-~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMP-FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCC-TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4567899999665 48999999999999999998888764 679999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++..+.
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987553
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=132.17 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN--PHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mn--g~~L~GR~I~Vk~a 385 (639)
.+.+++|||++++. ++||++|+++|++||+|++|+|+. .||||||+|++.++|++|++.|+ +..|.|++|+|.++
T Consensus 28 ~~ps~~LfVgNLp~-~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPI-DVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCT-TCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 35678999996664 899999999999999999999998 58999999999999999999886 46899999999999
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
+.+...
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876544
No 88
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=125.50 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhc-CCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeE-EcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSI-YGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHF-VCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~Fsq-FG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~-L~GR~I~Vk 383 (639)
...++|||++++. ++|+++|+++|++ ||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+.. |+|++|.|.
T Consensus 7 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTP-DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCT-TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4568999996665 8999999999999 999999999885 689999999999999999999999999 999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766543
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=124.17 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHD--------VRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFV 375 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~d--------VrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L 375 (639)
....++|||++++. ++|+++|+++|++||.|.+ |+|+.+ ++||||||+|.+.++|++|++.||+..|
T Consensus 10 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGE-NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCS-SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45678999996654 8999999999999999999 999875 6799999999999999999999999999
Q ss_pred cCeEEEEEecc
Q 041390 376 CDSRVLVKPYK 386 (639)
Q Consensus 376 ~GR~I~Vk~a~ 386 (639)
.|++|.|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 90
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=4.1e-14 Score=126.47 Aligned_cols=82 Identities=7% Similarity=0.045 Sum_probs=74.6
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
.....++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.
T Consensus 31 ~~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDF-GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCS-SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345778999997764 8999999999999999999999886 689999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++..+.
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=118.70 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++ +++|+++|+++|++| .|.+|+|+++ ++||||||+|.+.++|++|++ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp-~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAP-FNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCC-SSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCC-CCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999665 589999999999999 9999999985 779999999999999999999 999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+.++.+
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987653
No 92
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=127.83 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC--eEEcCeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNP--HFVCDSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng--~~L~GR~I~Vk~a~ 386 (639)
+.+++|||++++ ++++|++|+++|++||+|.+|+|+. .||||||+|++.++|++|++.|++ ..|+|++|+|.+++
T Consensus 13 ~p~~~l~V~nLp-~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLC-ESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCC-SSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 467899999765 4899999999999999999999998 699999999999999999998754 56999999999997
Q ss_pred cCCc
Q 041390 387 EKGK 390 (639)
Q Consensus 387 ~K~k 390 (639)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7653
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=2.3e-14 Score=128.02 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=75.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHE-EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34678999997764 8999999999999999999999875 679999999999999999999999999999999999
Q ss_pred ecccCCcc
Q 041390 384 PYKEKGKV 391 (639)
Q Consensus 384 ~a~~K~k~ 391 (639)
++..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99776544
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=127.74 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
..++|||++++. .+|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|.|.++..+
T Consensus 9 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPA-GTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 467999997664 899999999999999999999997 8999999999999999999999999999999999998654
No 95
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=3.6e-14 Score=125.21 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. ++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|++|.|.+++.
T Consensus 28 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPL-DVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCT-TCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35678999996654 89999999999999999999998 79999999999999999999999999999999999987
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
+.++
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 96
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=119.45 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|++ +||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 6 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSA-ACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCT-TCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 35678999997665 899999999999999999999986 6999999999999999999999999999999999977
Q ss_pred CCc
Q 041390 388 KGK 390 (639)
Q Consensus 388 K~k 390 (639)
+.+
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=1.3e-14 Score=118.21 Aligned_cols=71 Identities=28% Similarity=0.402 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 313 QIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 313 ~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
+|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ ||++.|+|++|.|++|
T Consensus 1 ~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSV-NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCS-SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 489996654 8999999999999999999999875 679999999999999999998 7999999999999875
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=4.2e-14 Score=130.72 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|.
T Consensus 67 ~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCT-TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999996654 8999999999999999999999875 789999999999999999999999999999999999
Q ss_pred ecccCCc
Q 041390 384 PYKEKGK 390 (639)
Q Consensus 384 ~a~~K~k 390 (639)
+++++..
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987643
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=125.54 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=71.4
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCCc
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGK 390 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K~k 390 (639)
++|||++++. .+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.||+..++|++|.|.+++++.+
T Consensus 1 ~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGT-GAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCS-SCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 4799996665 8999999999999999999999987 899999999999999999999999999999999999987653
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.9e-14 Score=120.71 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++ +.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. ++.|+|++|.|.+
T Consensus 13 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLP-WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEESCC-SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEEC
T ss_pred CCCCEEEEEcCC-CcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEe
Confidence 457899999765 48999999999999999999999875 6799999999999999999995 7899999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
+.++.+.
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9877543
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.51 E-value=4.7e-14 Score=130.83 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=73.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+||++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 37 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSF-YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4678999997764 8999999999999999999999875 5789999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
++++..
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976544
No 102
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=5.7e-14 Score=121.62 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++. ++|+++|+++|++||+|.+|+|++ |||||+|.+.++|++|++.||++.|+|+.|.|.+++++
T Consensus 9 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLAN-TVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCT-TCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4578999997665 899999999999999999999875 79999999999999999999999999999999999876
Q ss_pred Ccc
Q 041390 389 GKV 391 (639)
Q Consensus 389 ~k~ 391 (639)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 103
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=124.19 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCC-eeEEEee-cc----CCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGP-VHDVRIP-YQ----QKRMFGFVTFVYPETVKLILAKGN--PHFVCDSRV 380 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~-V~dVrIp-~D----ksRGFGFVtF~~~E~Ae~Al~~mn--g~~L~GR~I 380 (639)
...++|||++++. .+|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|++|++.|| +..++|++|
T Consensus 6 ~~~~~l~V~nLp~-~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPK-MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCT-TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCC-cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4678999997664 8999999999999999 9999998 43 689999999999999999999996 589999999
Q ss_pred EEEecccCCcc
Q 041390 381 LVKPYKEKGKV 391 (639)
Q Consensus 381 ~Vk~a~~K~k~ 391 (639)
.|.+++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999877653
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=126.33 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=72.3
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCe-eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPV-HDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V-~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++ +++||++|+++|++||.| .+|+|++| ++||||||+|.+.++|++||+. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp-~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIP-FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCC-TTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcC-CcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3567899999665 589999999999999999 99999886 7899999999999999999998 9999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997553
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=5e-15 Score=124.65 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=67.6
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.+ |++|++.||+..++|++|.|+++.+
T Consensus 2 ~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVY-SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECT-TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899996654 8999999999999999999999875 67999999999999 9999999999999999999999977
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1.5e-14 Score=122.71 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
.+..++|||++++. ++|+++|+++|++||+|.+|+++.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.
T Consensus 12 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNMPF-TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECCCT-TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34568999996654 8999999999999999999988764 688999999999999999999999999999999999
Q ss_pred ecc
Q 041390 384 PYK 386 (639)
Q Consensus 384 ~a~ 386 (639)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 107
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=118.48 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=66.7
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.++ +.++|++|.|+++
T Consensus 1 ~~l~v~nlp~-~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSW-QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCS-SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799997664 8999999999999999999999875 679999999999999999999999 9999999999986
No 108
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=120.47 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=64.4
Q ss_pred CceEEEeCCCCCCC------CHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe-EEE
Q 041390 311 ARQIYLTFPADSTF------REEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDS-RVL 381 (639)
Q Consensus 311 sr~IYV~~~~d~~~------TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR-~I~ 381 (639)
+++|||++++. .+ ++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ +|.
T Consensus 1 ~~~l~V~nLp~-~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQ-VGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCC-CCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCC-CcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 47899997764 66 78999999999999999999853 7899999999999999999999999999999 887
Q ss_pred E
Q 041390 382 V 382 (639)
Q Consensus 382 V 382 (639)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=4.5e-14 Score=125.75 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|+ .||++.|+|+.|.|.++
T Consensus 35 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDY-GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECT-TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 467999996654 8999999999999999999999875 77999999999999999999 79999999999999998
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=124.84 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=69.1
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||++++. ++++++|+++|++|| |.+|+|+.+ ++||||||+|.+.++|++|+ .||+..|+|+.|.|.
T Consensus 17 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPY-DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSS-CCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 4678999996654 899999999999999 999999875 47999999999999999999 899999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 111
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=129.82 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC--CeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADST-FREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN--PHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~-~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mn--g~~L~GR~I~Vk~ 384 (639)
...+++|||++++. + +||++|+++|++||+|.+|+|++ +||||||+|++.++|++|++.|+ +..|+||+|+|.+
T Consensus 22 ~~p~~~l~V~NLp~-~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPH-SGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCC-SSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCC-ccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34688999996665 6 99999999999999999999987 89999999999999999999874 5679999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
++.+..
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 976654
No 112
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.50 E-value=5.3e-14 Score=120.05 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=62.1
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
......+|||++++ +++||++|+++|++||+|.+|+|+++ +||||||+|.+.++|+++. . ....+.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp-~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~-~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCT-EDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLC-G-EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCC-TTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHT-T-CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHc-C-CCcccCCEEEEEEEcC
Confidence 34577899999665 59999999999999999999999984 8999999999999998432 1 2344679999999998
Q ss_pred cCCc
Q 041390 387 EKGK 390 (639)
Q Consensus 387 ~K~k 390 (639)
+|..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 113
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.6e-15 Score=121.97 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=69.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQP-GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCT-TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4678999997654 8999999999999999999999875 6799999999999999999999999999999988876
Q ss_pred cc
Q 041390 385 YK 386 (639)
Q Consensus 385 a~ 386 (639)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 114
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=2.5e-14 Score=131.82 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
....++|||++++. .+|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 70 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 70 CPLDCKVYVGNLGN-NGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp STTSCEEEEESCCS-CCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 45678999996654 8999999999999999999999986 799999999999999999999999999999999999987
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=120.51 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++. ++|+++|+++|++||+| +|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSY-SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCT-TCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 35679999996665 79999999999999988 45543 7899999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
++++.+
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987653
No 116
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=132.16 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=72.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--EEeecc----CCCceEEEEECCHHHHHHHHHhCCCe----EEcCe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHD--VRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPH----FVCDS 378 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~d--VrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~----~L~GR 378 (639)
...++|||++++ +++||++|+++|++||+|.. |+|++| ++||||||+|.+. +|++|++.||+. .|+||
T Consensus 21 ~~~~~lfV~nL~-~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLN-PHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCC-TTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999665 58999999999999999977 999986 6899999999999 999999999999 99999
Q ss_pred EEEEEecccCCc
Q 041390 379 RVLVKPYKEKGK 390 (639)
Q Consensus 379 ~I~Vk~a~~K~k 390 (639)
+|.|++++++.+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999977643
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3e-14 Score=120.78 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=70.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCC-eeEEEeeccCCCceEEEEECCHHHHHHHHHhCCC-eEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGP-VHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNP-HFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~-V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng-~~L~GR~I~Vk~a 385 (639)
....++|||++++. ++||++|+++|++||+ |..+.| . +||||||+|.+.++|++|++.||+ ..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~vv~~~~~-~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSP-AVTADDLRQLFGDRKLPLAGQVL-L--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCT-TCCHHHHHHHHHHTTCCCSSCEE-E--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHHcCCceEEEEE-c--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35678999996655 8999999999999999 666665 3 699999999999999999999999 9999999999999
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
+++..+
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 876543
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=1e-13 Score=119.77 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
.+..++|||++++.-++++++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..++|++|.|.+++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 45788999996652279999999999999999999985 69999999999999999999999999999999999976
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-14 Score=124.34 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=73.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCe----eEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPV----HDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V----~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++ +++|+++|+++|++||.| ..+++..+++||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 23 ~~~~~l~V~nLp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLS-PRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCC-TTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467899999766 489999999999999999 666766668999999999999999999999999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++.+...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 120
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=117.91 Aligned_cols=78 Identities=23% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcC--CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIY--GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqF--G~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
....++|||++++. .+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLML-STSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCT-TCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeCCCC-CCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35678999997665 89999999999999 999999876 589999999999999999999999999999999999
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
+++.+
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.48 E-value=4.1e-14 Score=137.38 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
..++|||++++. .+|+++|+++|++||+|++|+|++| .+||||||+|.+.++|++|++.||+..|+|++|.|.++++
T Consensus 102 ~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDK-SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCccc-ccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 456899996654 8999999999999999999999986 6799999999999999999999999999999999999987
Q ss_pred CCcc
Q 041390 388 KGKV 391 (639)
Q Consensus 388 K~k~ 391 (639)
|..+
T Consensus 181 ~~~~ 184 (213)
T 4f02_A 181 RKER 184 (213)
T ss_dssp HHHH
T ss_pred Cccc
Confidence 6443
No 122
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=128.22 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=65.1
Q ss_pred ceEEEeCC---CCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECC----HHH----HHHHHH--hCCCeE
Q 041390 312 RQIYLTFP---ADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVY----PET----VKLILA--KGNPHF 374 (639)
Q Consensus 312 r~IYV~~~---~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~----~E~----Ae~Al~--~mng~~ 374 (639)
++|||+++ .+|.++|++|++||++||+|.+|+++.| ++||||||+|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999955 2579999999999999999999999987 899999999996 333 889988 789999
Q ss_pred EcCeEEEEEecc
Q 041390 375 VCDSRVLVKPYK 386 (639)
Q Consensus 375 L~GR~I~Vk~a~ 386 (639)
|+||+|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 123
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=9.6e-14 Score=117.13 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++. +++|++|+++|++| +|.+|+|+ ++||||||+|.+.++|++|++.||+..++|++|.|.++..+
T Consensus 3 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQ-DSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCS-SCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 3568899997664 89999999999999 99999996 59999999999999999999999999999999999998654
Q ss_pred C
Q 041390 389 G 389 (639)
Q Consensus 389 ~ 389 (639)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 124
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=5.4e-14 Score=126.94 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++ +++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|++|.|.+++.+
T Consensus 37 ~~~~~lfVgn---l~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYG---EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEEC---SSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcC---CCCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 4678999997 3699999999999999999999985 9999999999999999999999999999999999999877
Q ss_pred Ccc
Q 041390 389 GKV 391 (639)
Q Consensus 389 ~k~ 391 (639)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=8.1e-14 Score=118.58 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++. .+++++|+++|++||+|..| ...+++||||||+|.+.++|++|++.||+..|+|++|.|.++.++
T Consensus 14 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSF-NITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCS-SCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4678999996654 89999999999999999888 333478999999999999999999999999999999999999877
Q ss_pred Cc
Q 041390 389 GK 390 (639)
Q Consensus 389 ~k 390 (639)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 126
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9e-14 Score=121.19 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHD-VRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~d-VrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++ +++||++|+++|++||.|.+ |+|+++ ++||||||+|.+.++|++|++. |++.|.||.|.|.+
T Consensus 13 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLP-FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCC-TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCC-CCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 457899999655 59999999999999999998 989875 7899999999999999999998 99999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.9e-14 Score=125.91 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=70.0
Q ss_pred CCCceEEEeC-CCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEE-----cCeEEEE
Q 041390 309 PSARQIYLTF-PADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFV-----CDSRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~-~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L-----~GR~I~V 382 (639)
...++|||++ +..+++||++|+++|++||+|++|.|+. .||||||+|.+.++|++|++.||++.| .|++|+|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 4568899952 3556899999999999999999999987 699999999999999999999999999 7999999
Q ss_pred EecccCC
Q 041390 383 KPYKEKG 389 (639)
Q Consensus 383 k~a~~K~ 389 (639)
.+++...
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9986543
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=8.1e-14 Score=122.05 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=69.1
Q ss_pred CCCceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 309 PSARQIYLTFPADST-FREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~-~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
...++|||++++. . +|+++|+++|++||+|.+|+| +||||||+|.+.++|++|++.||+..|+|++|.|.+++.
T Consensus 25 ~~~~~l~V~nl~~-~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNLNT-ALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSCCC-SSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCCCc-ccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3568999997665 6 999999999999999999999 579999999999999999999999999999999999975
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.47 E-value=1.1e-13 Score=130.00 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 70 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSIHE-EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899997665 8999999999999999999999875 5799999999999999999999999999999999999
Q ss_pred cccCCcch
Q 041390 385 YKEKGKVQ 392 (639)
Q Consensus 385 a~~K~k~~ 392 (639)
+..+....
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98776543
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=7e-14 Score=125.03 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGP---VHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~---V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
...++|||++++ +++||++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ||++.|+||.|.|
T Consensus 15 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLP-WSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCC-TTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 457899999554 58999999999999999 999999875 789999999999999999999 7999999999999
Q ss_pred EecccC
Q 041390 383 KPYKEK 388 (639)
Q Consensus 383 k~a~~K 388 (639)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.46 E-value=4e-14 Score=129.79 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 45 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCS-SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999996654 8999999999999999999999875 7899999999999999999999999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++++...
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 132
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.46 E-value=5.8e-14 Score=130.06 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGP---VHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~---V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
....++|||++++ +++||++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ ||++.|+||.|.
T Consensus 41 ~~~~~~lfVgnLp-~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLP-WSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCC-TTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3467899999554 59999999999999999 899999986 789999999999999999999 899999999999
Q ss_pred EEecccC
Q 041390 382 VKPYKEK 388 (639)
Q Consensus 382 Vk~a~~K 388 (639)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998644
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=120.40 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=71.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEE--------cC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFV--------CD 377 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L--------~G 377 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..| .+
T Consensus 23 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPL-SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCT-TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4678999997665 8999999999999999999999886 6789999999999999999999999999 67
Q ss_pred eEEEEEecccC
Q 041390 378 SRVLVKPYKEK 388 (639)
Q Consensus 378 R~I~Vk~a~~K 388 (639)
++|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=2.5e-14 Score=123.10 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++|+++|+++|++||+|.+ +++.+ ++||||||+|.+.++|++|++ ||+..|.|+.|.|.+
T Consensus 15 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNP-NKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCT-TSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 4578999996654 8999999999999999998 55543 789999999999999999999 999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9877543
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.3e-14 Score=119.69 Aligned_cols=79 Identities=18% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
+..++|||++++...+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..+.|++|.|.+++.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 4678999996652289999999999999999999996 699999999999999999999999999999999999776
Q ss_pred Ccc
Q 041390 389 GKV 391 (639)
Q Consensus 389 ~k~ 391 (639)
.+.
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 136
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.9e-13 Score=133.58 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
..+++|||++++.+++|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|++|++.||+..|.|++|.|.+++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 356899999877569999999999999999999999985 5899999999999999999999999999999999998654
Q ss_pred C
Q 041390 389 G 389 (639)
Q Consensus 389 ~ 389 (639)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 137
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=122.05 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
..++|||++++ +++||++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|+ .||++.|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp-~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMP-FSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCC-SSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35689999554 699999999999999 9999999986 78999999999999999999 579999999999999885
Q ss_pred cC
Q 041390 387 EK 388 (639)
Q Consensus 387 ~K 388 (639)
++
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=117.78 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=72.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEE-eeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVR-IPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVr-Ip~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
...++|||++++ +++|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|++|++.||+..|+|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIP-PHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEEC-SSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCC-CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 457899999665 4899999999999999999995 88887777899999999999999999999999999999999987
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 139
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=115.78 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=66.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
..+++|||++++ +++||++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...+.|++|.|.++.++
T Consensus 3 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCT-GDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCC-SSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 356899999665 48999999999999999999999875 899999999999999865332 45669999999999876
Q ss_pred Cc
Q 041390 389 GK 390 (639)
Q Consensus 389 ~k 390 (639)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 140
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=9.7e-14 Score=121.42 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++ +++||++|+++|++||. ++|+|++| ++||||||+|.+.++|++||+ +|++.|+||.|.|.+
T Consensus 12 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLP-YRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCC-TTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999554 58999999999999995 59999886 789999999999999999995 699999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86554
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.44 E-value=4.4e-14 Score=114.77 Aligned_cols=71 Identities=31% Similarity=0.466 Sum_probs=65.0
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 313 QIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 313 ~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
+|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.++|++|.|+++
T Consensus 1 ~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSP-DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCS-SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589986654 8999999999999999999999875 7899999999999999999997 899999999999875
No 142
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=8.7e-14 Score=119.85 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
..++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ +++.|+|++|.|.++.
T Consensus 8 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDV-RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 468999997664 8999999999999999999999986 688999999999999999999 8999999999999998
Q ss_pred cCCcc
Q 041390 387 EKGKV 391 (639)
Q Consensus 387 ~K~k~ 391 (639)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77644
No 143
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=7.5e-14 Score=139.01 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCC--CeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYG--PVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG--~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
..++|||+++. +++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|++|.|+
T Consensus 67 ~~~~lfVgnL~-~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLT-WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCC-TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCC-CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 46789999665 5899999999999999 9999999986 789999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
+++.+.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 997543
No 144
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=3.4e-13 Score=112.29 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=66.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIY----G-------PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCD 377 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqF----G-------~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~G 377 (639)
...++|||++++. ++++++|+++|++| | +|.+|+++. .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 4578999997664 89999999999999 8 999999998 6999999999999999999 999999999
Q ss_pred eEEEEEe
Q 041390 378 SRVLVKP 384 (639)
Q Consensus 378 R~I~Vk~ 384 (639)
++|.|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.4e-14 Score=125.57 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec----cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPY----QQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~----DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++ +++||++|+++|++||.|.+|.++. +++||||||+|.+.++|++||+ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLP-FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCC-TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCC-CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3466899999665 5899999999999999999855543 2789999999999999999999 89999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=124.58 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeec-cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHD--------VRIPY-QQKRMFGFVTFVYPETVKLILAKGNPHFVCDSR 379 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~d--------VrIp~-DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~ 379 (639)
..+++|||++++. ++|+++|+++|++||.|.. |++.. +++||||||+|.+.++|++|++.||+..|.|+.
T Consensus 43 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAK-HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECT-TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4568999996664 8999999999999999987 44443 489999999999999999999999999999999
Q ss_pred EEEEecccCCcch
Q 041390 380 VLVKPYKEKGKVQ 392 (639)
Q Consensus 380 I~Vk~a~~K~k~~ 392 (639)
|.|.+++.+..+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999997655443
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=116.08 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++|+++|+++|++|+ +|+|+.+ ++||||||+|.+.++|++|++.||++.|+|++|.|.+
T Consensus 13 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSE-DTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCT-TCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-ccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678999996655 899999999999885 4555543 6789999999999999999999999999999999999
Q ss_pred cccCCcc
Q 041390 385 YKEKGKV 391 (639)
Q Consensus 385 a~~K~k~ 391 (639)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9877543
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.7e-13 Score=113.52 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=66.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++ +++||++|+++|++||+|.+|.+.....+ ||||+|.+.++|++|++ ||++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl~-~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFP-RGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCC-TTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 456899999665 48999999999999999999822222233 99999999999999999 9999999999999988765
Q ss_pred Cc
Q 041390 389 GK 390 (639)
Q Consensus 389 ~k 390 (639)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-14 Score=128.06 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHD--------VRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVC 376 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~d--------VrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~ 376 (639)
...++|||++++ +++++++|+++|++||+|.+ |+|+.+ ++||||||+|.+.++|++|++.||+..|+
T Consensus 5 ~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLG-ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457899999665 48999999999999999999 888875 67999999999999999999999999999
Q ss_pred CeEEEEEecccCCc
Q 041390 377 DSRVLVKPYKEKGK 390 (639)
Q Consensus 377 GR~I~Vk~a~~K~k 390 (639)
|++|.|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999977653
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=3.1e-13 Score=129.62 Aligned_cols=79 Identities=9% Similarity=0.076 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEeccc
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCD--SRVLVKPYKE 387 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~G--R~I~Vk~a~~ 387 (639)
....|||+++ .+.+||++|+++|++||+|++|+|..+++||||||+|.+.++|++|++.||+..|.| ++|+|.+++.
T Consensus 45 ~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3456899966 469999999999999999999999876778999999999999999999999999976 9999999987
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 151
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=5.2e-13 Score=118.19 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=68.6
Q ss_pred CCCceEEEeCCCC----CCCCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE
Q 041390 309 PSARQIYLTFPAD----STFREEDVSNYFSIYGPVHDVRIPYQ-----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSR 379 (639)
Q Consensus 309 ~~sr~IYV~~~~d----~~~TEedLre~FsqFG~V~dVrIp~D-----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~ 379 (639)
..+++|||.+..+ .+-++++|+++|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.||+..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999986542 13379999999999999999999874 57999999999999999999999999999999
Q ss_pred EEEEeccc
Q 041390 380 VLVKPYKE 387 (639)
Q Consensus 380 I~Vk~a~~ 387 (639)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=5.6e-13 Score=121.26 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=72.0
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.+++|||++++. ++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+.|++|.|.++
T Consensus 1 s~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQ-NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCCC-CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 368999997765 8999999999999999999999875 67899999999999999999999999999999999998
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
.++.
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 153
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-13 Score=117.56 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCCCC----------CHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 041390 308 NPSARQIYLTFPADSTF----------REEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCD 377 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~----------TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~G 377 (639)
...+++|+|.+..+-.. ++++|+++|++||+|.+|.|+...+||||||+|.+.++|++|++.||+..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35788999997643211 36899999999999999977544689999999999999999999999999999
Q ss_pred eEEEEEecccCCc
Q 041390 378 SRVLVKPYKEKGK 390 (639)
Q Consensus 378 R~I~Vk~a~~K~k 390 (639)
|+|.|.++.++.+
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999977653
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=9.3e-14 Score=121.67 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCC---eeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGP---VHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~---V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
....++|||++++ +++|+++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ||++.|+||.|.
T Consensus 8 ~~~~~~l~V~nLp-~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLP-WSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCC-SSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCC-CCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3467889999555 58999999999999998 999999876 789999999999999999999 899999999999
Q ss_pred EEecccC
Q 041390 382 VKPYKEK 388 (639)
Q Consensus 382 Vk~a~~K 388 (639)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998654
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=5e-13 Score=122.25 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.+++|||++++. ++++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~-~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQ-DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCT-TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 468999997765 8999999999999999999999875 57899999999999999999999999999999999998
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
.++.
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=7.1e-13 Score=120.45 Aligned_cols=79 Identities=10% Similarity=0.156 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
....++|||++++. .+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|++|.|.
T Consensus 84 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDLNV-NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESCCT-TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCCCC-CCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34678999997665 8999999999999999999999875 779999999999999999999999999999999999
Q ss_pred eccc
Q 041390 384 PYKE 387 (639)
Q Consensus 384 ~a~~ 387 (639)
++++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=6.2e-13 Score=129.03 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++ +++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+|+..+.|+.|.|.++
T Consensus 14 p~~tlfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLH-PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46899999665 48999999999999999999999985 78999999999999999999999999999999999998
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6554
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.3e-13 Score=121.32 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=70.8
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
|+|||++++. ++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..+.|+.|.|.++..+
T Consensus 1 R~l~V~nlp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDK-AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEET-TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCC-cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899997764 8999999999999999999999875 68999999999999999999999999999999999998655
Q ss_pred C
Q 041390 389 G 389 (639)
Q Consensus 389 ~ 389 (639)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.39 E-value=5.9e-13 Score=127.68 Aligned_cols=82 Identities=7% Similarity=0.052 Sum_probs=74.3
Q ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 307 MNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
.....++|||++++ +.+++++|+++|++||+|++|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLD-FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCC-SCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999665 48999999999999999999999885 789999999999999999999999999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987654
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.39 E-value=4.2e-13 Score=122.90 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=71.1
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ +++..++|++|.|+++
T Consensus 86 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGIGP-DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEECT-TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCCCC-CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 457899996665 8999999999999999999999875 689999999999999999998 7999999999999999
Q ss_pred ccCC
Q 041390 386 KEKG 389 (639)
Q Consensus 386 ~~K~ 389 (639)
.+|.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=123.55 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCe----eEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPV----HDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V----~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
...++|||+++ +|++||++|+++|++||+| .+|+|+++ ++||||||+|.+.++|++|++. |++.|.||.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 35678999955 5699999999999999986 69999875 7899999999999999999998 99999999999
Q ss_pred EEecccC
Q 041390 382 VKPYKEK 388 (639)
Q Consensus 382 Vk~a~~K 388 (639)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988544
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=3.6e-13 Score=119.69 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeE-----EEEEe
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSR-----VLVKP 384 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~-----I~Vk~ 384 (639)
..++|||++++ +++||++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.||+..|+|++ |.|..
T Consensus 15 ~~~~l~V~nLp-~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGLP-PSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEECC-SSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 56789999665 58999999999999999999999985 99999999999999999999999999998 66666
Q ss_pred ccc
Q 041390 385 YKE 387 (639)
Q Consensus 385 a~~ 387 (639)
..+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1.2e-12 Score=122.94 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=69.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGIKE-DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECCTT-TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCCCC-CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 4568999997665 8999999999999999999999875 6799999999999999999998 89999999999999
Q ss_pred cccCCcchH
Q 041390 385 YKEKGKVQE 393 (639)
Q Consensus 385 a~~K~k~~~ 393 (639)
+.++.+...
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 988765543
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=1.7e-12 Score=119.97 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=69.0
Q ss_pred CceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEeccc
Q 041390 311 ARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMF-GFVTFVYPETVKLILAKGNPHFVCD--SRVLVKPYKE 387 (639)
Q Consensus 311 sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGF-GFVtF~~~E~Ae~Al~~mng~~L~G--R~I~Vk~a~~ 387 (639)
--.|||+++. +.+||++|+++|++||+|.+|+|+. +.||| |||+|.+.++|++|++.||+..|.| ++|+|.+++.
T Consensus 28 VL~I~V~NL~-~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCC-SCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred eEEEEECCCC-CCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3468899665 6999999999999999999999876 46788 9999999999999999999999998 9999999976
Q ss_pred CC
Q 041390 388 KG 389 (639)
Q Consensus 388 K~ 389 (639)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 165
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2.3e-13 Score=126.61 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=70.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
...++|||+++ ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|| .+|++.|.||.|.|.++
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 45678999955 46999999999999999 779999986 78999999999999999999 77999999999999998
Q ss_pred ccCCcc
Q 041390 386 KEKGKV 391 (639)
Q Consensus 386 ~~K~k~ 391 (639)
..+...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 776543
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=1.1e-12 Score=123.44 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|++|.|.+
T Consensus 112 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPN-YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCT-TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4678999997665 8999999999999999999999875 5699999999999999999999999999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987764
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.36 E-value=9.7e-13 Score=121.05 Aligned_cols=76 Identities=16% Similarity=0.338 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..++|++|.|++
T Consensus 92 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGLPN-YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECCCT-TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcCCC-cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 4578999997665 8999999999999999999999875 5689999999999999999999999999999999998
Q ss_pred c
Q 041390 385 Y 385 (639)
Q Consensus 385 a 385 (639)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.1e-12 Score=125.05 Aligned_cols=80 Identities=11% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQ-DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCT-TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCCCC-cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 3568999997665 8999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+..+.
T Consensus 202 a~~~~ 206 (216)
T 2qfj_A 202 AVTPP 206 (216)
T ss_dssp CSSCS
T ss_pred ecCCC
Confidence 97764
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.1e-12 Score=114.27 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=64.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc-------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ-------QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D-------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
...++|||++++ +++||++|+++|++||+|. ++++.+ ++||||||+|.+.++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLP-PDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCC-TTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 457899999665 5899999999999999999 888763 67999999999999999999998 458888888
Q ss_pred EEeccc
Q 041390 382 VKPYKE 387 (639)
Q Consensus 382 Vk~a~~ 387 (639)
|.....
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 876643
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.8e-12 Score=121.68 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. ++||++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|.|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGLSF-ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 4678999997765 8999999999999999999999875 5799999999999999999988 99999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+..+.
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=1.4e-12 Score=124.25 Aligned_cols=83 Identities=19% Similarity=0.405 Sum_probs=73.5
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. ++||++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 27 ~~~~l~V~nLp~-~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYY-ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCT-TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCC-CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 467999996665 8999999999999999999999875 68999999999999999999999999999999999998
Q ss_pred ccCCcchH
Q 041390 386 KEKGKVQE 393 (639)
Q Consensus 386 ~~K~k~~~ 393 (639)
..+.....
T Consensus 106 ~~~~~~~~ 113 (216)
T 2qfj_A 106 SNIGQAQP 113 (216)
T ss_dssp SCCGGGHH
T ss_pred CCccccch
Confidence 77665443
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=118.18 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCce-EEEEECCHHHHHHHHHhCCCeEEcC--eEEEEEecccCC
Q 041390 313 QIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMF-GFVTFVYPETVKLILAKGNPHFVCD--SRVLVKPYKEKG 389 (639)
Q Consensus 313 ~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGF-GFVtF~~~E~Ae~Al~~mng~~L~G--R~I~Vk~a~~K~ 389 (639)
.|||+++ .+.+|+++|+++|++||+|.+|+|+. .+|| |||+|.+.++|+.|++.||+..|+| +.|.|.+++.+.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3678854 46999999999999999999999976 3597 9999999999999999999999988 699999998765
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=8.3e-13 Score=121.08 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCee--EEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVH--DVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~--dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|||+++ +|++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. ++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45678999955 5699999999999999 677 9999886 7899999999999999999997 7799999999999
Q ss_pred ecccC
Q 041390 384 PYKEK 388 (639)
Q Consensus 384 ~a~~K 388 (639)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88543
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.34 E-value=1.5e-12 Score=127.67 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=73.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
.+.+++|||++++.+++++++|+++|++||+|.+|+|+.++ ||||||+|.+.++|++|++.||+..|.|+.|.|.++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 45789999997765589999999999999999999999865 89999999999999999999999999999999999875
Q ss_pred C
Q 041390 388 K 388 (639)
Q Consensus 388 K 388 (639)
+
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=3.3e-12 Score=127.77 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=73.5
Q ss_pred CCCCceEEEeCCCCCCCCHHHHH----HHhhcCCCeeEEEeecc-CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 308 NPSARQIYLTFPADSTFREEDVS----NYFSIYGPVHDVRIPYQ-QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLr----e~FsqFG~V~dVrIp~D-ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
...+++|||++++ +++||++|+ ++|++||+|.+|+|++. ++||||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 6 ~~~~~~l~V~nlp-~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLN-EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4568999999766 589999977 89999999999999874 89999999999999999999999999999999999
Q ss_pred EecccCC
Q 041390 383 KPYKEKG 389 (639)
Q Consensus 383 k~a~~K~ 389 (639)
.+++.+.
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9996554
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.33 E-value=3.1e-12 Score=124.07 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
..++|||++++. ++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.++ +.++|++|.|.+++
T Consensus 108 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPT-DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCT-TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCC-cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 358999996664 8999999999999999999999975 789999999999999999998854 69999999999876
Q ss_pred c
Q 041390 387 E 387 (639)
Q Consensus 387 ~ 387 (639)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.33 E-value=2.5e-12 Score=139.56 Aligned_cols=83 Identities=14% Similarity=0.319 Sum_probs=74.8
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. .+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|++||+.||++.|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNY-DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3568999996654 8999999999999999999999875 6899999999999999999999999999999999999
Q ss_pred cccCCcch
Q 041390 385 YKEKGKVQ 392 (639)
Q Consensus 385 a~~K~k~~ 392 (639)
+..+....
T Consensus 179 a~~~~~~~ 186 (437)
T 3pgw_S 179 ERGRTVKG 186 (437)
T ss_pred eCCCCCCC
Confidence 98765543
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=1.3e-12 Score=123.75 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccCC
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKG 389 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K~ 389 (639)
.+++|||++++.+++++++|+++|++||+|.+|+|+.++ +|||||+|.+.++|++|++.||+..+.|+.|.|.++..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 468999997765589999999999999999999999865 8999999999999999999999999999999999987653
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=3.4e-12 Score=118.19 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++. .+|+++|+++|++||+|..| ...+++||||||+|.+.++|.+|++.||+..|+|++|.|.++.+|
T Consensus 97 ~~~~~l~v~nlp~-~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSF-NITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCS-SCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCC-CCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 4678999997765 89999999999999999888 333489999999999999999999999999999999999999876
No 180
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.3e-12 Score=110.42 Aligned_cols=79 Identities=11% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCC------CCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 309 PSARQIYLTFPAD------STFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d------~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
...+.|-|.+... ..++|++|+++|++||+|.+|+|+. ++||||||+|.+.++|+.|++.+++ +.|++|.|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3455677765442 3589999999999999999999984 7999999999999999999998554 68999999
Q ss_pred EecccCCc
Q 041390 383 KPYKEKGK 390 (639)
Q Consensus 383 k~a~~K~k 390 (639)
.+++++..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99977653
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=2.8e-12 Score=117.72 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEE
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ------QKRMFGFVTFVYPETVKLILAKGNPHFVC---DSRV 380 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~---GR~I 380 (639)
.+++|||++++. ++||++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..+. ++.+
T Consensus 2 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPR-TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 468999997665 8999999999999999999999875 57899999999999999999999998775 6788
Q ss_pred EEEecccCC
Q 041390 381 LVKPYKEKG 389 (639)
Q Consensus 381 ~Vk~a~~K~ 389 (639)
.|.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888876543
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.30 E-value=6.5e-12 Score=125.72 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=78.7
Q ss_pred CCCceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADST-FREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~-~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
...++|||++++. . +|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|++|.|.+
T Consensus 182 ~~~~~l~v~nlp~-~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPP-GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCT-TCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCc-ccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4678999997765 6 599999999999999999999885 7799999999999999999999999999999999999
Q ss_pred cccCCcchHHHHH
Q 041390 385 YKEKGKVQEKKQQ 397 (639)
Q Consensus 385 a~~K~k~~~k~~~ 397 (639)
+.++..+...+.+
T Consensus 261 a~~~~~~~~~~~~ 273 (284)
T 3smz_A 261 CAPGPPGRSMLAA 273 (284)
T ss_dssp CCSSSCHHHHHHH
T ss_pred ecCCCcccchhhh
Confidence 9988876655544
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=3.8e-12 Score=116.52 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=68.3
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.+++|||++++. ++||++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. .+.++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNW-DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCT-TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 468999996664 8999999999999999999999875 7899999999999999999996 57999999999988
Q ss_pred ccC
Q 041390 386 KEK 388 (639)
Q Consensus 386 ~~K 388 (639)
..+
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 654
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=6.8e-12 Score=125.44 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVC-DSRVLVKPYK 386 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~-GR~I~Vk~a~ 386 (639)
....++|||++++. .+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|. |+.|.|.+++
T Consensus 204 ~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPE-ETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCC-cCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34678999997765 89999999999999999999999744 699999999999999999999999999 9999999985
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.29 E-value=3.4e-12 Score=117.24 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEc---CeEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVC---DSRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~---GR~I~V 382 (639)
...++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISK-KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCC-cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3678999997665 8999999999999999999999885 67999999999999999999999998776 499999
Q ss_pred Eec
Q 041390 383 KPY 385 (639)
Q Consensus 383 k~a 385 (639)
++|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=4.9e-12 Score=115.65 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcC--eEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCD--SRVLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G--R~I~V 382 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+.| ++|.|
T Consensus 87 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPR-TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCT-TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCCCC-CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4568999997765 8999999999999999999999875 568999999999999999999999999988 99999
Q ss_pred Eec
Q 041390 383 KPY 385 (639)
Q Consensus 383 k~a 385 (639)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=3.8e-12 Score=127.35 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhC-CCeEEc---CeEEEE
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKG-NPHFVC---DSRVLV 382 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~m-ng~~L~---GR~I~V 382 (639)
..++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.| ++..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSP-VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCC-CCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 467899997764 8999999999999999999999876 78999999999999999999999 566665 999999
Q ss_pred EecccC
Q 041390 383 KPYKEK 388 (639)
Q Consensus 383 k~a~~K 388 (639)
.++..+
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998654
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7.8e-12 Score=110.19 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCCceEEEeCCCCCCCCHHH----HHHHhhcC-CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEE
Q 041390 308 NPSARQIYLTFPADSTFREED----VSNYFSIY-GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLV 382 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEed----Lre~FsqF-G~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~V 382 (639)
.+..+.|||++++. ++++++ |+++|++| |+|.+|. .|||||+|.+.++|++|++.|++..|.||+|+|
T Consensus 6 ~p~~T~lYV~NL~~-~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPA-NKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCT-TSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCC-cCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34455599996654 899888 55899999 5999993 399999999999999999999999999999999
Q ss_pred EecccCCcc
Q 041390 383 KPYKEKGKV 391 (639)
Q Consensus 383 k~a~~K~k~ 391 (639)
.+++.+...
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999887643
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.26 E-value=7.3e-12 Score=113.88 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeE--EEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSR--VLV 382 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~--I~V 382 (639)
...++|||++++. .+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..+.|+. |.|
T Consensus 86 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGLPK-TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCCCC-cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3567899997765 8999999999999999999999875 57899999999999999999999999999975 888
Q ss_pred Eec
Q 041390 383 KPY 385 (639)
Q Consensus 383 k~a 385 (639)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 190
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=1.2e-11 Score=109.39 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=66.7
Q ss_pred CCCceEEEeCCCCC-CC--------CHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCe
Q 041390 309 PSARQIYLTFPADS-TF--------REEDVSNYFSIYGPVHDVRIPYQ------QKRMFGFVTFVYPETVKLILAKGNPH 373 (639)
Q Consensus 309 ~~sr~IYV~~~~d~-~~--------TEedLre~FsqFG~V~dVrIp~D------ksRGFGFVtF~~~E~Ae~Al~~mng~ 373 (639)
..++.|.|.+..+- .+ .++||++.|++||+|++|+|+++ +++|||||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35677888754321 22 34799999999999999999975 46899999999999999999999999
Q ss_pred EEcCeEEEEEeccc
Q 041390 374 FVCDSRVLVKPYKE 387 (639)
Q Consensus 374 ~L~GR~I~Vk~a~~ 387 (639)
.++||.|.|..+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999854
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=1.7e-11 Score=123.15 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCC-CCHHHHHHHhhcCCCeeEEEeecc-----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEE
Q 041390 308 NPSARQIYLTFPADST-FREEDVSNYFSIYGPVHDVRIPYQ-----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVL 381 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~-~TEedLre~FsqFG~V~dVrIp~D-----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~ 381 (639)
....++|||++++. . +|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|+ .||+..|+|++|.
T Consensus 207 ~~~~~~l~v~nlp~-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNLST-ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEECT-TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECCCc-ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 35678999997665 7 999999999999999999999874 56999999999999999999 9999999999999
Q ss_pred EEecccCC
Q 041390 382 VKPYKEKG 389 (639)
Q Consensus 382 Vk~a~~K~ 389 (639)
|.++++|.
T Consensus 285 V~~a~~k~ 292 (292)
T 2ghp_A 285 VSLADKKP 292 (292)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998763
No 192
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=2.1e-11 Score=109.88 Aligned_cols=77 Identities=9% Similarity=-0.017 Sum_probs=66.1
Q ss_pred CCceEEEeCCCCC---------CCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 041390 310 SARQIYLTFPADS---------TFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRV 380 (639)
Q Consensus 310 ~sr~IYV~~~~d~---------~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I 380 (639)
.++.|.|.+..+- .-.++||++.|++||+|++|.|+++..||||||+|.+.++|++|++.||+..++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5667777643321 1235799999999999999999988789999999999999999999999999999999
Q ss_pred EEEecc
Q 041390 381 LVKPYK 386 (639)
Q Consensus 381 ~Vk~a~ 386 (639)
.|.++.
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999984
No 193
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.23 E-value=1.1e-11 Score=109.16 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred HHHHHHh-hcCCCeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 327 EDVSNYF-SIYGPVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 327 edLre~F-sqFG~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
++|++.| ++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..++||.|.|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 4455555 99999999999986 67999999999999999999999999999999999875
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.22 E-value=2.7e-11 Score=111.41 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=68.0
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIY----G-------PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDS 378 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqF----G-------~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR 378 (639)
..++|||++++. ++||++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||++.+.|+
T Consensus 3 ~~~~l~V~nLp~-~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCT-TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCCCc-ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 468999996665 89999999999999 7 888888877 8999999999999999999 8899999999
Q ss_pred EEEEEecccC
Q 041390 379 RVLVKPYKEK 388 (639)
Q Consensus 379 ~I~Vk~a~~K 388 (639)
+|.|.++...
T Consensus 79 ~i~v~~~~~~ 88 (172)
T 2g4b_A 79 SLKIRRPHDY 88 (172)
T ss_dssp ECEEECCSSC
T ss_pred eeeecCCccc
Confidence 9999987654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=2.2e-11 Score=121.81 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=71.4
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecccC
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~K 388 (639)
...++|||++++. ++|+++|+++|++||+|.+|+|.+ +||||||+|.+.++|++|++.||+..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPT-DITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCT-TCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCC-CCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 5678999996664 899999999999999999999987 8999999999999999999999999999999999998654
Q ss_pred C
Q 041390 389 G 389 (639)
Q Consensus 389 ~ 389 (639)
.
T Consensus 97 ~ 97 (261)
T 3sde_A 97 A 97 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.21 E-value=3.1e-11 Score=113.45 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcC----C-------CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIY----G-------PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDS 378 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqF----G-------~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR 378 (639)
.+++|||++++. ++||++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .||+..|.|+
T Consensus 3 ~~~~l~V~nLp~-~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPF-GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCT-TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred ceeEEEEcCCCC-CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 578999996665 89999999999999 5 777777765 8999999999999999999 8899999999
Q ss_pred EEEEEecccCC
Q 041390 379 RVLVKPYKEKG 389 (639)
Q Consensus 379 ~I~Vk~a~~K~ 389 (639)
.|.|.++..+.
T Consensus 79 ~i~v~~~~~~~ 89 (198)
T 2yh0_A 79 SLKIRRPHDYQ 89 (198)
T ss_dssp EEEEECCCCCC
T ss_pred eEEEeCCCCCC
Confidence 99999987653
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=3.4e-11 Score=109.03 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCceEEEeCCCCC----CCCHHHHHHHhhcCCCeeEEEeecc--------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 041390 310 SARQIYLTFPADS----TFREEDVSNYFSIYGPVHDVRIPYQ--------QKRMFGFVTFVYPETVKLILAKGNPHFVCD 377 (639)
Q Consensus 310 ~sr~IYV~~~~d~----~~TEedLre~FsqFG~V~dVrIp~D--------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G 377 (639)
.+++|+|.+..+- +-.++||++.|++||+|++|+|+.+ +++||+||+|.+.++|.+|++.||+..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678888855321 2247999999999999999999875 246999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 041390 378 SRVLVKPYKE 387 (639)
Q Consensus 378 R~I~Vk~a~~ 387 (639)
|.|.|..+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.18 E-value=3.6e-11 Score=117.85 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYG-PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVC-DSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG-~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~-GR~I~Vk~a~ 386 (639)
+..++|||++++. .+++++|+++|++|| +|.+|+|+. ++||||||+|.+.++|.+|++.||+..+. |++|.|.+++
T Consensus 149 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPP-SVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCT-TCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCc-cCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 4578999997665 899999999999999 999999954 37899999999999999999999999999 9999999987
Q ss_pred cC
Q 041390 387 EK 388 (639)
Q Consensus 387 ~K 388 (639)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.18 E-value=1.6e-11 Score=113.64 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeec---cCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 308 NPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPY---QQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 308 ~~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~---DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
....++|||++++. ++||++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ ||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~-~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNP-NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCT-TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 45788999996664 899999999999999887733322 3799999999999999999995 899999999999999
Q ss_pred cccCCc
Q 041390 385 YKEKGK 390 (639)
Q Consensus 385 a~~K~k 390 (639)
+..+..
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 976543
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.17 E-value=2.4e-11 Score=115.09 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc-CeEEEEEecc
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYG-PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVC-DSRVLVKPYK 386 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG-~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~-GR~I~Vk~a~ 386 (639)
+..++|||++++. .+++++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|++.||+..++ |++|.|.+++
T Consensus 118 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPP-SVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCT-TCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCC-CCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4578999997665 899999999999999 9999999552 6899999999999999999999999999 9999999987
Q ss_pred cC
Q 041390 387 EK 388 (639)
Q Consensus 387 ~K 388 (639)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 201
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.16 E-value=7e-11 Score=118.21 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc----CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEe
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ----QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKP 384 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D----ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~ 384 (639)
+..++|||++++. .+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 93 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANLPP-SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCCCC-cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4568999996654 8999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred cccCC
Q 041390 385 YKEKG 389 (639)
Q Consensus 385 a~~K~ 389 (639)
+..+.
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 97654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=5.5e-11 Score=125.93 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=67.6
Q ss_pred CCCCceEEEeCC-CCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEc---Ce--EEE
Q 041390 308 NPSARQIYLTFP-ADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVC---DS--RVL 381 (639)
Q Consensus 308 ~~~sr~IYV~~~-~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~---GR--~I~ 381 (639)
...+++|||++. ..+.+||++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..+. |+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 457889999964 567899999999999999999999987 8999999999999999999999999983 55 577
Q ss_pred EEecc
Q 041390 382 VKPYK 386 (639)
Q Consensus 382 Vk~a~ 386 (639)
|..+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77663
No 203
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.14 E-value=7.5e-11 Score=118.47 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCC-CeeEEEeecc---CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYG-PVHDVRIPYQ---QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG-~V~dVrIp~D---ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
..++|||++++. .+++++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPP-SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCT-TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCC-CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999996654 899999999999999 9999999885 58999999999999999999999999999999999998
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
.++.+
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76643
No 204
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.13 E-value=4.7e-11 Score=116.61 Aligned_cols=76 Identities=11% Similarity=0.006 Sum_probs=66.7
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCe--eEEEeecc--CCCceEEEEECCHHHHHHHHHhCCCeEEcCe----EE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPV--HDVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNPHFVCDS----RV 380 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V--~dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR----~I 380 (639)
+.+++|||++++. ++||++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|.+|+..||++.|.|+ ++
T Consensus 121 ~p~~~l~v~NLp~-~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPL-EVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECT-TCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCC-CCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 4567899996654 89999999999999999 99999876 5679999999999999999999999999887 56
Q ss_pred EEEec
Q 041390 381 LVKPY 385 (639)
Q Consensus 381 ~Vk~a 385 (639)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77654
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1e-08 Score=89.56 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=61.8
Q ss_pred CCCCceEEEeCCC---CCCCCH----HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEE
Q 041390 308 NPSARQIYLTFPA---DSTFRE----EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRV 380 (639)
Q Consensus 308 ~~~sr~IYV~~~~---d~~~TE----edLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I 380 (639)
.+..-||+|.... +.+.-. .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+|++ ||+..++||+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 3555677776422 123333 6799999999999999999943 9999999999999998 89999999999
Q ss_pred EEEecccC
Q 041390 381 LVKPYKEK 388 (639)
Q Consensus 381 ~Vk~a~~K 388 (639)
+|..+++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998653
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=3.4e-08 Score=96.24 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEeecc--------CCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEeccc
Q 041390 324 FREEDVSNYFSIYGPVHDVRIPYQ--------QKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKE 387 (639)
Q Consensus 324 ~TEedLre~FsqFG~V~dVrIp~D--------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~~ 387 (639)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|.+|++.||+..++||.|.|..+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999852 6899999999999999999999999999999999999853
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1e-07 Score=83.89 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred CCCCCceEEEeCCCCC----C-CCH---HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCe
Q 041390 307 MNPSARQIYLTFPADS----T-FRE---EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDS 378 (639)
Q Consensus 307 ~~~~sr~IYV~~~~d~----~-~TE---edLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR 378 (639)
..+..-||+|....+. + +.+ .+|.+.|++||+|..|||+.|+ +||+|.+.++|.+||+ ||+..++||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 3466678888754321 1 221 5699999999999999999965 9999999999999999 899999999
Q ss_pred EEEEEec
Q 041390 379 RVLVKPY 385 (639)
Q Consensus 379 ~I~Vk~a 385 (639)
.|+|+.-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=5.7e-07 Score=82.29 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=67.0
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECC-HHHHHHHHHhCC--CeEEcCeEEEEEec
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVY-PETVKLILAKGN--PHFVCDSRVLVKPY 385 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~-~E~Ae~Al~~mn--g~~L~GR~I~Vk~a 385 (639)
+....|||+++....+++++|+++|++||+|..|.++.| +-.|||.|.+ .++|+.|++.+| +..|+|..+.|...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 356789999666523999999999999999999999985 3379999999 899999999994 78899999999887
Q ss_pred ccCCc
Q 041390 386 KEKGK 390 (639)
Q Consensus 386 ~~K~k 390 (639)
....+
T Consensus 94 ~GeeE 98 (121)
T 1owx_A 94 EGEVE 98 (121)
T ss_dssp CHHHH
T ss_pred CCHHH
Confidence 65443
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0017 Score=58.77 Aligned_cols=73 Identities=8% Similarity=-0.026 Sum_probs=62.4
Q ss_pred CceEEEeCCCCCCCCHHHHHHHhhcC-----CCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEec
Q 041390 311 ARQIYLTFPADSTFREEDVSNYFSIY-----GPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY 385 (639)
Q Consensus 311 sr~IYV~~~~d~~~TEedLre~FsqF-----G~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a 385 (639)
.|+|=+-.++| ++++..|+.+..++ |.|++|.+.. ..|=|+|+|.+...|-+|.-.++|.+|.||+|+|.-.
T Consensus 21 ~rtiaL~~ipD-tvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSD-KVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCT-TCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCC-CCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 45555555555 99999999999999 9999999877 4566999999999999998888999999999999865
Q ss_pred c
Q 041390 386 K 386 (639)
Q Consensus 386 ~ 386 (639)
.
T Consensus 98 ~ 98 (117)
T 2l9w_A 98 N 98 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.004 Score=55.60 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCceEEEeCCCCCCCCHHHHHHHhhc-----CCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEE
Q 041390 309 PSARQIYLTFPADSTFREEDVSNYFSI-----YGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVK 383 (639)
Q Consensus 309 ~~sr~IYV~~~~d~~~TEedLre~Fsq-----FG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk 383 (639)
...++|.|.++++ .+.++.|+-||+. =|+|++|.... +=|+|+|.+++.|++++++ ..|.|+|.+|.|.
T Consensus 6 ~~~~~I~V~~lPp-~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPP-AVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCT-TSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cCccEEEEECCCC-CCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 4567899997777 7899999999987 37999998654 6799999999999999988 7999999999999
Q ss_pred ecccCC
Q 041390 384 PYKEKG 389 (639)
Q Consensus 384 ~a~~K~ 389 (639)
++.++.
T Consensus 80 P~~~~~ 85 (104)
T 2dhx_A 80 PAPPRA 85 (104)
T ss_dssp ECCCCC
T ss_pred cCCCCC
Confidence 987665
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.0072 Score=55.18 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=57.9
Q ss_pred ceEEE-eCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcC-eEEEEEecccC
Q 041390 312 RQIYL-TFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCD-SRVLVKPYKEK 388 (639)
Q Consensus 312 r~IYV-~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~G-R~I~Vk~a~~K 388 (639)
+-|.| +|++. .-..|-.+|++||+|++...+. ...+-.|+|.++.+|++||.+ |+..|+| -.|-|++...+
T Consensus 25 ~wVtVFGFp~~---~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 25 TWVTVFGFPQA---SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GEEEEECCCGG---GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CEEEEECCCHH---HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 33444 56654 4688889999999999998754 678999999999999999999 9999985 77888887543
No 212
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.91 E-value=0.0014 Score=54.50 Aligned_cols=24 Identities=33% Similarity=0.772 Sum_probs=22.1
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
.-.+|.||.+|.|++|.+|+|.|.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred cCeeCHHHhcCCCCCCCCCCCccc
Confidence 456999999999999999999996
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.80 E-value=0.0093 Score=55.32 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=54.8
Q ss_pred EEEeCCCCCCCCHHHHHHHhhcCCCeeE-EEeecc-----------------CCCceEEEEECCHHHHHHHHHhCCCeEE
Q 041390 314 IYLTFPADSTFREEDVSNYFSIYGPVHD-VRIPYQ-----------------QKRMFGFVTFVYPETVKLILAKGNPHFV 375 (639)
Q Consensus 314 IYV~~~~d~~~TEedLre~FsqFG~V~d-VrIp~D-----------------ksRGFGFVtF~~~E~Ae~Al~~mng~~L 375 (639)
|..+|+.+ ....|-++|++||.|.+ +.+..+ ...++-.|+|+++.+|.+||.. |+..|
T Consensus 11 tVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 11 LVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 34477654 57889999999999988 322210 1356779999999999999999 99999
Q ss_pred cCeEEEEEecc
Q 041390 376 CDSRVLVKPYK 386 (639)
Q Consensus 376 ~GR~I~Vk~a~ 386 (639)
+|..|-|+++.
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99999999984
No 214
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.004 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.772 Sum_probs=21.4
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
--.+|.||.+|.|++|.+|+|.|.
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred cceeCHhHccCcCCCCCCCCCccc
Confidence 346899999999999999999996
No 215
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=95.64 E-value=0.0066 Score=49.34 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=40.0
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhh
Q 041390 8 KLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHL 61 (639)
Q Consensus 8 ~~vf~riq~~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L 61 (639)
..+|.+|++++|++|.||.|+|| +.+..|++.|=-.|| +|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLL--E~d~~ell~ll~~~e-~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLL--ELSPAQLLLLLASED-SLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHT--TSCHHHHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhc--cCCHHHHHHHHcCHH-HHHHHHHHHHHHH
Confidence 35899999999999999999998 466778888876665 4566666665544
No 216
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.52 E-value=0.003 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.857 Sum_probs=21.9
Q ss_pred CceeeecccccCCCCCCCCCCCC
Q 041390 192 WKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 192 ~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
.+.|.+|.+|.|+.|+.|+|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 38999999999999999999998
No 217
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.48 E-value=0.025 Score=50.51 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=61.1
Q ss_pred CceEEEeCCCCCCCCH----HHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 311 ARQIYLTFPADSTFRE----EDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 311 sr~IYV~~~~d~~~TE----edLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
.++|+|++.+..-++. +.++++|.+|+++......+ +=.=-.|.|.+.++|.+|-..|++..+.|++++|..++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 3678898765422232 57799999999999987776 43446899999999999999999999999999999987
Q ss_pred c
Q 041390 387 E 387 (639)
Q Consensus 387 ~ 387 (639)
.
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.33 E-value=0.0095 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=22.1
Q ss_pred CCCceeeecc-cccCCCCCCCCCCCC
Q 041390 190 LGWKHCLYFA-KGFCKNGTACKFHHI 214 (639)
Q Consensus 190 ~g~kpC~YFa-rG~Ck~G~sCrF~Hg 214 (639)
+.-++|.||. .|.|+.|.+|+|.|+
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCC
Confidence 4567999995 899999999999996
No 219
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.28 E-value=0.0055 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.901 Sum_probs=15.8
Q ss_pred ceeeecccccCCCCCCCCCCCC
Q 041390 193 KHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 193 kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
..|.||.+|.|++|.+|+|.|.
T Consensus 14 ~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 14 ELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SBCTTTTTTCCSCSTTCSSBSS
T ss_pred ccCcccccCcCCCCCCCCCCCC
Confidence 3677777777777777777774
No 220
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.04 E-value=0.0057 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.901 Sum_probs=20.1
Q ss_pred ceeeecccccCCCCCC-CCCCCC
Q 041390 193 KHCLYFAKGFCKNGTA-CKFHHI 214 (639)
Q Consensus 193 kpC~YFarG~Ck~G~s-CrF~Hg 214 (639)
.+|.+|.+|.|++|.+ |+|.|.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccC
Confidence 4799999999999995 999995
No 221
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=94.98 E-value=0.024 Score=49.26 Aligned_cols=51 Identities=29% Similarity=0.398 Sum_probs=40.3
Q ss_pred HHHHhhhccCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhhh
Q 041390 9 LVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLS 62 (639)
Q Consensus 9 ~vf~riq~~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L~ 62 (639)
.+|.+|++++|+.|.||.|+||= .+..|++.|==.| ..|++-|..|-.-|.
T Consensus 27 ~Lyp~V~~~~p~~A~KITGMLLE--md~~Ell~lle~~-e~L~~kV~EA~~vL~ 77 (88)
T 3kuj_A 27 RLFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESP-ESLRSKVDEAVAVLQ 77 (88)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHTT--SCHHHHHHHHHCH-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhCCCccchhhhHhhc--CCHHHHHHHHcCH-HHHHHHHHHHHHHHH
Confidence 58999999999999999999984 5567788775554 557777777766664
No 222
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=94.97 E-value=0.0098 Score=51.31 Aligned_cols=52 Identities=29% Similarity=0.393 Sum_probs=40.4
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhhh
Q 041390 8 KLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLS 62 (639)
Q Consensus 8 ~~vf~riq~~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L~ 62 (639)
.-+|.+|++++||.|.||.|+||= .+..|++.|=-. +.+|++.|..|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLE--md~~ElL~Lle~-~e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLE--MDNGEILNLLDT-PGLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSC--THHHHHHTTCCT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhc--CCHHHHHHHHcC-HHHHHHHHHHHHHHHH
Confidence 357999999999999999999984 566678877554 4566777777766553
No 223
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.73 E-value=0.0082 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=21.1
Q ss_pred Cceeeec-ccccCCCCCCCCCCCC
Q 041390 192 WKHCLYF-AKGFCKNGTACKFHHI 214 (639)
Q Consensus 192 ~kpC~YF-arG~Ck~G~sCrF~Hg 214 (639)
-.+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 5689999 5999999999999996
No 224
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=94.71 E-value=0.012 Score=50.85 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=40.7
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhhh
Q 041390 8 KLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLS 62 (639)
Q Consensus 8 ~~vf~riq~~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L~ 62 (639)
.-+|-+|++++||+|.||.|+||= .+..|++.|=-.|| .|++-|..|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLE--md~~Ell~Lles~e-~L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLE--MDQTEVLHLLESPD-ALKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHH--HCHHHHHHHTTCSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 458999999999999999999985 55777888866665 45677777766553
No 225
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.41 E-value=0.007 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=0.0
Q ss_pred Cceee-ecccccCCCCCCCCCCCC
Q 041390 192 WKHCL-YFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 192 ~kpC~-YFarG~Ck~G~sCrF~Hg 214 (639)
-++|. |+..|+|++|..|+|.|+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp ------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCC
Confidence 46897 556999999999999996
No 226
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.31 E-value=0.01 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=20.6
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
-...|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 3557999999999999 9999994
No 227
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.22 E-value=0.023 Score=49.69 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=41.6
Q ss_pred HHHHHhhhc--cCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhhh
Q 041390 8 KLVFSRIKA--IDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLS 62 (639)
Q Consensus 8 ~~vf~riq~--~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L~ 62 (639)
.-+|.+|++ ++||+|.||.|+|| +.+..|++.|=-.|| +|++-|..|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLL--Emd~~ElL~LLes~e-~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMIL--DLPPQEVFPLLESDE-LFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHT--TSCHHHHHHHHTCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHh--cCCHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 357999999 99999999999998 577788888865555 56777777766664
No 228
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.13 E-value=0.016 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.822 Sum_probs=20.1
Q ss_pred ceeeecccccCCCCC-CCCCCCC
Q 041390 193 KHCLYFAKGFCKNGT-ACKFHHI 214 (639)
Q Consensus 193 kpC~YFarG~Ck~G~-sCrF~Hg 214 (639)
-+|.+|.+|.|++|. .|+|.|.
T Consensus 10 ~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 10 EVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EBCTTGGGTCCCSCTTTCSSBCC
T ss_pred hhcHHHhcCCCCCCCCCCCCcCC
Confidence 479999999999995 9999994
No 229
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.95 E-value=0.027 Score=61.91 Aligned_cols=57 Identities=18% Similarity=0.386 Sum_probs=41.7
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAK 369 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~ 369 (639)
+.|.|||..+. .+++.+|.+||++||+|.++-+-. ...-|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~~~~--~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIHCPE--KISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEEECC--C---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEEcCC--CCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 45789998654 589999999999999999996654 3345999999999999988765
No 230
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.41 E-value=0.017 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.712 Sum_probs=20.9
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
....|.||.||.|.+| +|+|.|.
T Consensus 55 ~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 55 TVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp EEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ccccchhhccCCCCCC-CcCccCC
Confidence 4668999999999999 9999994
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.18 E-value=0.035 Score=50.56 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=26.6
Q ss_pred EEEeecc--CCCceEEEEECCHHHHHHHHHhCCC
Q 041390 341 DVRIPYQ--QKRMFGFVTFVYPETVKLILAKGNP 372 (639)
Q Consensus 341 dVrIp~D--ksRGFGFVtF~~~E~Ae~Al~~mng 372 (639)
.+.|+.+ +++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4556554 7899999999999999999988654
No 232
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.90 E-value=0.012 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.912 Sum_probs=20.4
Q ss_pred ceeeecccccCCCCC-CCCCCCC
Q 041390 193 KHCLYFAKGFCKNGT-ACKFHHI 214 (639)
Q Consensus 193 kpC~YFarG~Ck~G~-sCrF~Hg 214 (639)
.+|.||.+|.|++|. .|+|.|.
T Consensus 21 ~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 21 EVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhHHHhcCcCCCCCCCCCCcCC
Confidence 489999999999999 7999995
No 233
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.88 E-value=0.025 Score=49.12 Aligned_cols=22 Identities=36% Similarity=0.868 Sum_probs=20.4
Q ss_pred ceeeecccccCCCCC-CCCCCCC
Q 041390 193 KHCLYFAKGFCKNGT-ACKFHHI 214 (639)
Q Consensus 193 kpC~YFarG~Ck~G~-sCrF~Hg 214 (639)
-+|.+|.||.|++|. .|+|.|-
T Consensus 18 ~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 18 EVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp CBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhchHHhcCCCCCCCCCCCCcCC
Confidence 389999999999998 9999994
No 234
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=92.83 E-value=0.26 Score=43.67 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=42.9
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhC
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG 370 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~m 370 (639)
..+-+||+||.+| ...||.++|+.||-| .|+=+. ---|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l~FP~ew--Kt~DI~~lFs~fggv-~I~Wid---DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHVTFPKEW--KTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEEECCTTC--CHHHHHHHHTTTCSC-CCEEEE---TTEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEEeCChhh--hhHHHHHHhhccCCE-EEEEEc---CCeEEEEecCHHHHHHHHHhc
Confidence 4556888999875 678999999999944 233333 257999999999999999874
No 235
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=92.66 E-value=0.05 Score=51.11 Aligned_cols=51 Identities=31% Similarity=0.435 Sum_probs=41.1
Q ss_pred HHHhhhccCCCchhhhhhhhhcccCChHHHHHHhcCchHHHHHHHHHHHHhhhc
Q 041390 10 VFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLSN 63 (639)
Q Consensus 10 vf~riq~~~pe~askI~g~ll~qd~~e~emirlA~gpd~ll~~~i~~ak~~L~~ 63 (639)
+|-+|++++||+|.||.|+||= .+..|++.|=-.|| +|++.|..|-.-|.-
T Consensus 74 LyplV~~~~p~~A~KITGMLLE--md~~ElL~LLes~e-~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 74 LFPLIQAMHPTLAGKITGMLLE--IDNSELLHMLESPE-SLRSKVDEAVAVLQA 124 (144)
T ss_dssp SHHHHHHHTTSCCSSHHHHTTT--SSSHHHHHHHHCTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccccchhhhhhcc--CCHHHHHHHHcCHH-HHHHHHHHHHHHHHH
Confidence 6899999999999999999995 55668888866655 567778888777753
No 236
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=91.89 E-value=0.041 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
.+-.|.+|.||.|.+| +|+|.|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 3668999999999999 8999994
No 237
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.70 E-value=0.04 Score=46.06 Aligned_cols=22 Identities=36% Similarity=0.993 Sum_probs=20.0
Q ss_pred Cceeeeccc-ccCCCCCCCCCCCC
Q 041390 192 WKHCLYFAK-GFCKNGTACKFHHI 214 (639)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (639)
..+|.||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 457999999 9999 899999996
No 238
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=91.22 E-value=0.044 Score=45.47 Aligned_cols=22 Identities=41% Similarity=1.055 Sum_probs=20.2
Q ss_pred Cceeeeccc-ccCCCCCCCCCCCC
Q 041390 192 WKHCLYFAK-GFCKNGTACKFHHI 214 (639)
Q Consensus 192 ~kpC~YFar-G~Ck~G~sCrF~Hg 214 (639)
..+|.||.+ |.|.+ ..|+|.|.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred CCcccccCCCCCCCC-CCeeccCC
Confidence 458999999 99999 99999996
No 239
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.14 E-value=0.2 Score=44.48 Aligned_cols=54 Identities=24% Similarity=0.432 Sum_probs=42.0
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN 371 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mn 371 (639)
+-+||+||.+| ...||.++|+.||. ..|+=+. ---|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ew--Kt~Di~~lFs~fgg-v~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEW--KTSDLYQLFSAFGN-IQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTC--CHHHHHHHTTTSEE-EEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhh--hhHHHHHHHhccCC-EEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45788999875 67899999999992 2333333 3579999999999999999753
No 240
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.61 E-value=0.09 Score=47.65 Aligned_cols=40 Identities=10% Similarity=-0.113 Sum_probs=36.9
Q ss_pred CCCceEEEEECCHHHHHHHHHhC-CCeEEcCeEEEEEecccC
Q 041390 348 QKRMFGFVTFVYPETVKLILAKG-NPHFVCDSRVLVKPYKEK 388 (639)
Q Consensus 348 ksRGFGFVtF~~~E~Ae~Al~~m-ng~~L~GR~I~Vk~a~~K 388 (639)
+-+|+++|+|.+.++|++|++.| |+..++| .|.|.++..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 67899999999999999999999 9999999 9999988654
No 241
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=87.73 E-value=0.12 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.6
Q ss_pred CCceeeecccccCCCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFCKNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~Ck~G~sCrF~Hg 214 (639)
-+-.|.+|.||.|.|+ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 3668999999999999 8999994
No 242
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=85.54 E-value=2.3 Score=36.81 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=52.0
Q ss_pred ceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 041390 312 RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ------QKRMFGFVTFVYPETVKLILAKGNPHFVCD 377 (639)
Q Consensus 312 r~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G 377 (639)
++|.|+.++. ++||+++.+..+.+.++.-.+...+ ..-.-|+|.|.+.+++..-.+.++++.+.+
T Consensus 2 ~KvVIRrLPP-~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPP-TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECT-TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCC-CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4678887776 8999999999999998877766543 222459999999999999999988887743
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=71.68 E-value=0.88 Score=35.50 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.1
Q ss_pred CCCceeeec-ccccCCCCCCCCCCCC
Q 041390 190 LGWKHCLYF-AKGFCKNGTACKFHHI 214 (639)
Q Consensus 190 ~g~kpC~YF-arG~Ck~G~sCrF~Hg 214 (639)
-.-.+|.-| +-|+|++|..|.+.|.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 356689766 5999999999999995
No 244
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.81 E-value=9.6 Score=42.08 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=44.3
Q ss_pred CCceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeeccCCCceEEEEECCHHHHHHHHHhCC
Q 041390 310 SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN 371 (639)
Q Consensus 310 ~sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mn 371 (639)
....++|+|+..| ...+|.+.|+.||.| +|+-+ ....+||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~f~~~~--~~~~i~~~fs~fg~v-~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVTFPKEW--KTSDLYQLFSAFGNI-QISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEECCTTC--CHHHHHHHGGGGCCC-EEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEeCCCCC--CHHHHHHHHHhcCCE-EEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 4557788888765 579999999999954 44433 34679999999999999999874
No 245
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=56.41 E-value=21 Score=31.25 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=47.3
Q ss_pred CceEEEeCCCCCCCCHHHHHHHhhcCCCeeEEEeecc------CCCceEEEEECCHHHHHHHHHhCCCeEEcC
Q 041390 311 ARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQ------QKRMFGFVTFVYPETVKLILAKGNPHFVCD 377 (639)
Q Consensus 311 sr~IYV~~~~d~~~TEedLre~FsqFG~V~dVrIp~D------ksRGFGFVtF~~~E~Ae~Al~~mng~~L~G 377 (639)
+-.|.|+.++. .+||+++.+.++.+=++.-.+...+ ..-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 9 ~~KvVIRrLPP-~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPP-GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCS-CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCC-CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 44688887777 8999999887776655433222222 112348999999999999999999888743
No 246
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.21 E-value=25 Score=28.25 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=43.7
Q ss_pred eEEEeCCCCCCCCHHHHHHHhhcCC-----CeeEEEeeccCCCceEEEEECCHHHHHHHHHhCCCeEEcCeEEEEEecc
Q 041390 313 QIYLTFPADSTFREEDVSNYFSIYG-----PVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYK 386 (639)
Q Consensus 313 ~IYV~~~~d~~~TEedLre~FsqFG-----~V~dVrIp~DksRGFGFVtF~~~E~Ae~Al~~mng~~L~GR~I~Vk~a~ 386 (639)
++||..-....++..+|-.++..-+ .|-.|+|.. .|.||.-.. +.++.+++.+++..+.|+++.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3555433333566677777776544 455666654 699999776 56888999999999999999988764
No 247
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=29.56 E-value=15 Score=36.78 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.4
Q ss_pred CCceeeecccccC----CCCCCCCCCCC
Q 041390 191 GWKHCLYFAKGFC----KNGTACKFHHI 214 (639)
Q Consensus 191 g~kpC~YFarG~C----k~G~sCrF~Hg 214 (639)
.+-.|+||.-|-| ..|+.|+|.|.
T Consensus 88 ~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 88 SLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp SBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred ceeechhhhcCcCCcccCCCCCcccccc
Confidence 6889999999999 45799999996
No 248
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=28.47 E-value=11 Score=25.04 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=12.1
Q ss_pred chhhhhhhhhcccC
Q 041390 21 NASKIMGYLLIQDN 34 (639)
Q Consensus 21 ~askI~g~ll~qd~ 34 (639)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 57899999999985
No 249
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=26.20 E-value=13 Score=24.74 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.5
Q ss_pred chhhhhhhhhcccC
Q 041390 21 NASKIMGYLLIQDN 34 (639)
Q Consensus 21 ~askI~g~ll~qd~ 34 (639)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 68899999999986
No 250
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.99 E-value=1.3e+02 Score=24.67 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=43.6
Q ss_pred hhHHHHHHHhhhccCCCchh--hhhhhhhcccCChHHHHH-----HhcCch----HHHHHHHHHHHHh
Q 041390 4 YEATKLVFSRIKAIDPENAS--KIMGYLLIQDNGDKEMIR-----LAFGPE----TLLHNLIFKAKTH 60 (639)
Q Consensus 4 ~e~t~~vf~riq~~~pe~as--kI~g~ll~qd~~e~emir-----lA~gpd----~ll~~~i~~ak~~ 60 (639)
.+..+-+|.|.-++||+|+. -.+|.+.+|...=++-|. |...|+ ..|..-|.+||..
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~I~~A~~~ 92 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIESINKAKKL 92 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Confidence 45667789999999999965 566788887776666666 666776 5788888888865
No 251
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.91 E-value=76 Score=28.86 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=4.1
Q ss_pred cccCCCcccccccc
Q 041390 461 LHLKNNHLNHQFHH 474 (639)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (639)
.+|.++.++||||+
T Consensus 129 ~~~~~~~~~~~~~~ 142 (142)
T 3gp4_A 129 NVERSNEGHHHHHH 142 (142)
T ss_dssp HHTTC---------
T ss_pred CccccCCCccccCC
Confidence 57999988777764
Done!