Citrus Sinensis ID: 041390

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLSNASASASASATNPSSLSPSSAPWLPPASLSYANVVNGSSCSSTNAAASASESLYYSNISNNNSYASSDIADDFHQFQDHLSFLDESSELASSTDADHHNHHHLLKRSLSLPVHPNVCFGSDDDPNSGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELSQELLLRSKASVQQRKLAAASQFMGSFPYNKCMNFLNDTQRSAALMMGDELHNKFGTCSRPERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSSACSSPSGPFDFHFGGRMLYNNQEMLRRKLEEQADLQQAIEMQGRRLMNLQLHLKNNHLNHQFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQITDHLFHREENRTSNHNKNNNSDGNDKEEKPNSDENDLCDSLEHILPDNLFASPKKSAGGHITVFSSASAEVDEKNTSSVTSTNNNTKLPSTSLNMSSLNSCLLQMSRFSSGQGTIGM
ccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHcccccCEEEECcccccccEEEEEEccHHHHHHHHHccccCEEcccEEEEECcccccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
****EATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHL********************************************************************************************************LKRSLSLPVHPNVCFGSDDDPNSGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIV*****************************AASQFMGSFPYNKCMNFLNDTQRSAALMMGDELHNKFGTC*******FFG****SARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPY**********************************DFHFGGRMLYN*************************LMNLQLHLKNNHL**************************************************************************************************************************************************LNMSSLNSCLLQMSRF*********
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSYEATKLVFSRIKAIDPENASKIMGYLLIQDNGDKEMIRLAFGPETLLHNLIFKAKTHLSNASASASASATNPSSLSPSSAPWLPPASLSYANVVNGSSCSSTNAAASASESLYYSNISNNNSYASSDIADDFHQFQDHLSFLDESSELASSTDADHHNHHHLLKRSLSLPVHPNVCFGSDDDPNSGLGWKHCLYFAKGFCKNGTACKFHHIHSPEAATAAAIVGSPSKLSEFELSQELLLRSKASVQQRKLAAASQFMGSFPYNKCMNFLNDTQRSAALMMGDELHNKFGTCSRPERNDFFGSMNPSARQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFVCDSRVLVKPYKEKGKVQEKKQQQHQQQMERGEYSSACSSPSGPFDFHFGGRMLYNNQEMLRRKLEEQADLQQAIEMQGRRLMNLQLHLKNNHLNHQFHHGLSNGSPIPSPTLSHSPNNRTRIFPFEGSDEEVPPEESGVSPVTDSQITDHLFHREENRTSNHNKNNNSDGNDKEEKPNSDENDLCDSLEHILPDNLFASPKKSAGGHITVFSSASAEVDEKNTSSVTSTNNNTKLPSTSLNMSSLNSCLLQMSRFSSGQGTIGM

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Zinc finger CCCH domain-containing protein 53 probableQ0D3J9
Zinc finger CCCH domain-containing protein 46 Possesses RNA-binding and ribonuclease activities in vitro.probableQ9SV09

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1L3K, chain A
Confidence level:very confident
Coverage over the Query: 310-386
View the alignment between query and template
View the model in PyMOL
Template: 1NMR, chain A
Confidence level:probable
Coverage over the Query: 8-62
View the alignment between query and template
View the model in PyMOL
Template: 1M9O, chain A
Confidence level:probable
Coverage over the Query: 190-214
View the alignment between query and template
View the model in PyMOL