Query 041391
Match_columns 704
No_of_seqs 614 out of 3401
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.4E-49 1.4E-53 458.2 24.5 417 97-557 257-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-44 4.9E-49 440.8 26.0 516 92-683 287-911 (1153)
3 PLN00113 leucine-rich repeat r 99.9 1.2E-21 2.6E-26 239.5 16.1 294 359-676 94-391 (968)
4 PLN00113 leucine-rich repeat r 99.9 1E-21 2.2E-26 240.1 14.4 85 408-492 181-265 (968)
5 KOG4194 Membrane glycoprotein 99.8 5.6E-20 1.2E-24 195.6 5.2 301 359-684 79-410 (873)
6 KOG0444 Cytoskeletal regulator 99.8 3.6E-20 7.7E-25 197.8 -2.6 156 378-555 28-184 (1255)
7 KOG0444 Cytoskeletal regulator 99.7 8E-20 1.7E-24 195.2 -2.9 292 359-682 79-379 (1255)
8 KOG4194 Membrane glycoprotein 99.7 2.8E-19 6E-24 190.3 -1.2 302 357-683 124-457 (873)
9 PLN03210 Resistant to P. syrin 99.7 3.8E-16 8.3E-21 192.5 18.0 289 378-696 630-975 (1153)
10 PF00931 NB-ARC: NB-ARC domain 99.6 1.2E-16 2.6E-21 167.8 4.7 187 69-274 66-285 (287)
11 KOG0472 Leucine-rich repeat pr 99.6 1.2E-17 2.7E-22 171.0 -8.9 245 378-653 64-310 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 2.3E-16 4.9E-21 161.9 -8.3 261 382-676 45-308 (565)
13 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 160.7 9.3 118 383-530 200-317 (754)
14 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 160.3 9.3 247 382-676 178-426 (754)
15 KOG0618 Serine/threonine phosp 99.5 2.5E-15 5.4E-20 168.5 -4.5 241 382-676 241-487 (1081)
16 KOG0617 Ras suppressor protein 99.4 3.1E-15 6.8E-20 137.1 -4.3 156 378-556 29-185 (264)
17 KOG0617 Ras suppressor protein 99.4 2.6E-15 5.6E-20 137.7 -5.8 165 411-616 29-195 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 6.1E-13 1.3E-17 153.7 12.0 235 382-676 222-456 (788)
19 KOG0618 Serine/threonine phosp 99.4 1.3E-14 2.9E-19 162.8 -2.4 257 362-674 245-506 (1081)
20 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 149.7 12.0 216 381-651 241-456 (788)
21 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-13 3.8E-18 145.8 1.3 265 377-675 18-317 (319)
22 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.5E-18 142.1 -1.4 105 589-695 270-376 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 7.5E-13 1.6E-17 140.9 1.7 254 386-676 2-289 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.3 2.4E-11 5.1E-16 143.5 13.6 287 379-689 520-853 (889)
25 KOG4237 Extracellular matrix p 99.2 1.5E-12 3.2E-17 134.0 -1.9 245 362-650 71-356 (498)
26 KOG0532 Leucine-rich repeat (L 99.0 2.8E-11 6E-16 130.0 -3.7 191 383-626 76-270 (722)
27 KOG0532 Leucine-rich repeat (L 98.8 1.4E-10 3.1E-15 124.6 -4.0 156 377-558 93-248 (722)
28 PF14580 LRR_9: Leucine-rich r 98.7 6.6E-09 1.4E-13 99.6 3.8 131 379-552 16-148 (175)
29 KOG3207 Beta-tubulin folding c 98.7 4.5E-09 9.7E-14 110.2 2.2 61 412-474 118-183 (505)
30 COG4886 Leucine-rich repeat (L 98.6 1.7E-08 3.6E-13 111.1 3.8 179 411-631 112-292 (394)
31 PLN03150 hypothetical protein; 98.6 6.2E-08 1.3E-12 112.3 7.4 78 407-484 434-511 (623)
32 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.7E-13 101.8 1.4 204 431-677 206-411 (490)
33 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.5E-13 109.1 4.4 182 378-611 112-294 (394)
34 KOG1259 Nischarin, modulator o 98.5 3.1E-08 6.6E-13 99.1 0.8 229 380-652 180-411 (490)
35 PLN03150 hypothetical protein; 98.4 3E-07 6.6E-12 106.6 7.8 107 441-557 420-528 (623)
36 KOG1909 Ran GTPase-activating 98.4 4.3E-08 9.2E-13 100.4 -0.5 255 376-675 24-308 (382)
37 KOG3207 Beta-tubulin folding c 98.3 7E-08 1.5E-12 101.4 -0.8 211 380-628 119-338 (505)
38 KOG1909 Ran GTPase-activating 98.3 2.7E-07 5.8E-12 94.7 1.2 73 374-453 50-133 (382)
39 KOG2120 SCF ubiquitin ligase, 98.2 3.2E-08 6.8E-13 99.1 -5.6 179 465-676 187-374 (419)
40 PF14580 LRR_9: Leucine-rich r 98.1 9.3E-07 2E-11 84.9 2.2 111 435-557 15-126 (175)
41 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.2E-12 100.9 -1.6 177 411-631 91-270 (414)
42 PF13855 LRR_8: Leucine rich r 98.0 3.8E-06 8.2E-11 66.0 2.9 58 416-474 2-60 (61)
43 PRK15386 type III secretion pr 97.8 6.8E-05 1.5E-09 80.8 9.2 65 411-481 48-112 (426)
44 PF13855 LRR_8: Leucine rich r 97.8 1.8E-05 3.9E-10 62.1 3.6 59 439-504 1-60 (61)
45 PRK15386 type III secretion pr 97.8 2E-05 4.3E-10 84.8 4.0 84 378-482 48-133 (426)
46 KOG2120 SCF ubiquitin ligase, 97.7 5.1E-06 1.1E-10 83.6 -0.6 157 383-555 186-349 (419)
47 KOG0531 Protein phosphatase 1, 97.7 5.8E-06 1.3E-10 91.6 -0.7 152 378-557 91-245 (414)
48 KOG1859 Leucine-rich repeat pr 97.6 3E-06 6.5E-11 94.2 -5.5 165 378-557 105-292 (1096)
49 KOG2982 Uncharacterized conser 97.4 2.7E-05 5.8E-10 78.5 -0.6 37 438-474 70-108 (418)
50 KOG2982 Uncharacterized conser 97.4 0.0001 2.3E-09 74.3 3.3 142 508-676 62-210 (418)
51 COG5238 RNA1 Ran GTPase-activa 97.3 0.00011 2.3E-09 73.4 1.9 249 379-675 27-313 (388)
52 KOG3665 ZYG-1-like serine/thre 97.3 0.00023 5E-09 82.9 4.9 133 415-556 122-262 (699)
53 KOG1859 Leucine-rich repeat pr 97.3 5.7E-06 1.2E-10 92.0 -7.8 176 432-651 102-290 (1096)
54 PF12799 LRR_4: Leucine Rich r 97.2 0.00047 1E-08 50.1 4.1 33 416-449 2-34 (44)
55 PF12799 LRR_4: Leucine Rich r 97.2 0.00036 7.8E-09 50.7 3.4 34 440-474 2-35 (44)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00012 2.6E-09 85.2 0.8 86 378-474 144-231 (699)
57 KOG4579 Leucine-rich repeat (L 97.0 0.00013 2.9E-09 65.6 -0.7 99 384-492 29-128 (177)
58 KOG4341 F-box protein containi 96.8 0.00013 2.7E-09 77.1 -2.6 260 378-679 160-440 (483)
59 KOG4341 F-box protein containi 96.3 0.00029 6.4E-09 74.4 -4.0 259 383-680 139-416 (483)
60 COG5238 RNA1 Ran GTPase-activa 96.1 0.002 4.4E-08 64.5 0.9 195 409-651 24-253 (388)
61 KOG4579 Leucine-rich repeat (L 95.9 0.0019 4.1E-08 58.4 -0.1 84 363-458 58-141 (177)
62 KOG1947 Leucine rich repeat pr 95.9 0.002 4.4E-08 72.4 -0.2 134 414-554 187-331 (482)
63 KOG1644 U2-associated snRNP A' 95.9 0.0059 1.3E-07 58.9 2.8 57 416-475 43-100 (233)
64 KOG2739 Leucine-rich acidic nu 95.6 0.0061 1.3E-07 61.1 2.1 62 412-475 40-103 (260)
65 KOG2739 Leucine-rich acidic nu 95.4 0.0087 1.9E-07 60.0 2.2 85 379-475 40-128 (260)
66 KOG1644 U2-associated snRNP A' 94.4 0.046 9.9E-07 52.9 4.1 86 589-675 60-150 (233)
67 KOG2123 Uncharacterized conser 94.1 0.0046 9.9E-08 62.3 -3.5 99 381-493 18-123 (388)
68 KOG2123 Uncharacterized conser 93.2 0.0067 1.5E-07 61.1 -4.0 76 413-493 17-94 (388)
69 PF00560 LRR_1: Leucine Rich R 91.5 0.11 2.3E-06 31.5 1.3 18 465-483 2-19 (22)
70 KOG1947 Leucine rich repeat pr 91.2 0.04 8.6E-07 61.9 -1.5 115 436-557 185-308 (482)
71 PF00560 LRR_1: Leucine Rich R 90.7 0.098 2.1E-06 31.7 0.5 18 441-459 2-19 (22)
72 PF13504 LRR_7: Leucine rich r 89.9 0.19 4.1E-06 28.4 1.3 17 665-682 1-17 (17)
73 KOG3864 Uncharacterized conser 89.0 0.13 2.9E-06 49.8 0.3 63 617-680 102-166 (221)
74 PF13306 LRR_5: Leucine rich r 87.3 1.7 3.8E-05 38.9 6.6 84 376-473 6-91 (129)
75 KOG0473 Leucine-rich repeat pr 86.5 0.043 9.3E-07 54.1 -4.7 87 378-476 38-124 (326)
76 KOG3864 Uncharacterized conser 80.8 0.47 1E-05 46.1 -0.2 81 383-472 102-185 (221)
77 PF13306 LRR_5: Leucine rich r 77.4 3.9 8.4E-05 36.6 4.8 89 369-472 22-112 (129)
78 PRK04841 transcriptional regul 76.7 12 0.00026 45.9 10.3 118 173-335 207-332 (903)
79 KOG4308 LRR-containing protein 75.1 0.076 1.6E-06 59.5 -8.6 169 376-556 109-302 (478)
80 KOG0473 Leucine-rich repeat pr 74.2 0.19 4.2E-06 49.7 -4.9 81 409-492 36-116 (326)
81 KOG4308 LRR-containing protein 71.8 0.28 6.2E-06 55.0 -5.1 162 382-555 144-329 (478)
82 smart00364 LRR_BAC Leucine-ric 70.0 2.5 5.4E-05 26.8 1.0 18 594-611 2-19 (26)
83 smart00367 LRR_CC Leucine-rich 68.0 3.1 6.8E-05 26.1 1.3 17 664-680 1-17 (26)
84 smart00369 LRR_TYP Leucine-ric 62.3 4.2 9.2E-05 25.4 1.0 19 595-613 3-21 (26)
85 smart00370 LRR Leucine-rich re 62.3 4.2 9.2E-05 25.4 1.0 19 595-613 3-21 (26)
86 KOG3763 mRNA export factor TAP 44.7 8.9 0.00019 43.0 0.7 80 595-676 219-312 (585)
87 PF13516 LRR_6: Leucine Rich r 43.3 3.9 8.4E-05 25.0 -1.4 12 463-474 2-13 (24)
88 PF08678 Rsbr_N: Rsbr N termin 41.5 54 0.0012 29.8 5.0 69 117-187 4-75 (129)
89 smart00365 LRR_SD22 Leucine-ri 32.2 38 0.00082 21.5 1.8 14 382-395 2-15 (26)
90 smart00368 LRR_RI Leucine rich 22.4 68 0.0015 20.5 1.7 14 382-395 2-15 (28)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-49 Score=458.19 Aligned_cols=417 Identities=21% Similarity=0.242 Sum_probs=252.8
Q ss_pred hhhhhhhhhhhhccccCcchhhhhHHHHHHHH----HHhhcChHHHhH-hhchhhhh------hchHHHHHHHhcCCCCC
Q 041391 97 KSKSKREVNAATNSKSNNDLKQKDNLVKKYLD----KIKKDSTENREK-LGELIKDH------IRRFEGILEKLSSGSIQ 165 (704)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~~------~~~l~LF~~~af~~~~~ 165 (704)
=+++||.|+..+-=-...+++.|..-.-.... -++.++...+.. ++.....+ -++|+||+++||.....
T Consensus 257 ~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 257 LLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred HhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 35678888776644444444444332211100 023334444443 34333333 47899999999988655
Q ss_pred chhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH----------------HHHHH
Q 041391 166 SEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME----------------MIINF 229 (704)
Q Consensus 166 ~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~----------------i~~~L 229 (704)
.++.++++|++||++|+||||| +.++|+.|+.|++.++|+.+.+ |+++|
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLA---------------l~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLA---------------LNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHH---------------HHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 5566999999999999999999 9999999999999999997654 78999
Q ss_pred HHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCccce
Q 041391 230 RNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPV 309 (704)
Q Consensus 230 ~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~~~ 309 (704)
++|||+||+++|.||||||+|||||.|++++||.+||||||+.. ...+.++++.|+.|+.+|+.++|++..
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~---------~~~~~~~~d~G~~~i~~LV~~~Ll~~~ 472 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP---------LDGGETAEDVGYDYIEELVRASLLIEE 472 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc---------cccccchhcchHHHHHHHHHHHHHhhc
Confidence 99999999889999999999999999999999999999999954 346789999999999999999999987
Q ss_pred eecccCCCcCeEEeCHHHHHHHHHhcC-----CCcccccccc--ccccccCccccceeeeeecccCCCCCcchhhcCCCC
Q 041391 310 RKKRRKDVNNRFKMDPLARLAVINSRK-----PEDLWCKWAR--LEGLEKGSTQLLTVSALVNVSEQFPDFQSKWFSNLK 382 (704)
Q Consensus 310 ~~~~~~~~~~~~~mHDll~dla~~i~~-----~e~~~~~~~~--~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~f~~l~ 382 (704)
... +...+|+|||+||+||.++++ +++ .....+ .+. .........+|.+....+.+..... =..++
T Consensus 473 ~~~---~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~--~~~~~ 545 (889)
T KOG4658|consen 473 RDE---GRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAG--SSENP 545 (889)
T ss_pred ccc---cceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccc-cccccchhheeEEEEeccchhhccC--CCCCC
Confidence 643 245789999999999999999 444 222211 111 0111111122322222222111100 02223
Q ss_pred CccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
.|++|-+.+|.. + ...++ ..|..++.|++|||++|.....+|.+|++|-+||+|+++++ .+..+|.++++
T Consensus 546 ~L~tLll~~n~~----~----l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~ 616 (889)
T KOG4658|consen 546 KLRTLLLQRNSD----W----LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGN 616 (889)
T ss_pred ccceEEEeecch----h----hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHH
Confidence 455555544421 0 00111 22444555555555555555555555555555555555542 44455555555
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC---C--------
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN---A-------- 530 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~---~-------- 530 (704)
|..|.+|++..+.....+|..+..|++|++|..+... .+.-...+.++. .|.+|+.|.+..... .
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l~el~-~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLLKELE-NLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhHHhhh-cccchhhheeecchhHhHhhhhhhHHH
Confidence 5555555555544443443333345555555432221 000011223333 444444443332221 0
Q ss_pred -----------CchhhHHHHhccCCCccEEEEEecCCC
Q 041391 531 -----------IPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 531 -----------~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
......+.++..+.+|+.|.+.+|.+.
T Consensus 693 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 011223356777889999999988864
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-44 Score=440.82 Aligned_cols=516 Identities=17% Similarity=0.172 Sum_probs=313.9
Q ss_pred HHHHHhhhhhhhhhhhhccccCcchhhhhHHHHHHHHHHhhcC--------hHHHhHhhchhhhh------hchHHHHHH
Q 041391 92 EEKEEKSKSKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDS--------TENREKLGELIKDH------IRRFEGILE 157 (704)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~------~~~l~LF~~ 157 (704)
...++..++||.++.-+. .++..|++++.+ ...|+..|+ .......+...+|+ -++|+||++
T Consensus 287 ~~~~~~L~~krvLLVLDd---v~~~~~l~~L~~-~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDD---LDDQDVLDALAG-QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR 362 (1153)
T ss_pred HHHHHHHhCCeEEEEEeC---CCCHHHHHHHHh-hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence 345667888888777554 567789999886 456776664 12222233334444 368999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH---------HHHH
Q 041391 158 KLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME---------MIIN 228 (704)
Q Consensus 158 ~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~---------i~~~ 228 (704)
+||++. .++.++++++++||++|+|+||| ++++|+.|+++ +..+|+.+++ |..+
T Consensus 363 ~Af~~~-~~~~~~~~l~~~iv~~c~GLPLA---------------l~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~ 425 (1153)
T PLN03210 363 SAFKKN-SPPDGFMELASEVALRAGNLPLG---------------LNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKT 425 (1153)
T ss_pred HhcCCC-CCcHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHH
Confidence 999886 56778999999999999999999 78888888765 5678887653 8889
Q ss_pred HHHhhhhchhh-hHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCcc
Q 041391 229 FRNKFRNLKNE-SKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIV 307 (704)
Q Consensus 229 L~lSYd~L~~~-lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~ 307 (704)
|++|||+|+++ .|.||+||||||.++.+ +.|..|+|.+.+.. +..++.|+++|||+
T Consensus 426 L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~--------------------~~~l~~L~~ksLi~ 482 (1153)
T PLN03210 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV--------------------NIGLKNLVDKSLIH 482 (1153)
T ss_pred HHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc--------------------hhChHHHHhcCCEE
Confidence 99999999875 99999999999998654 35778888877632 22388999999998
Q ss_pred ceeecccCCCcCeEEeCHHHHHHHHHhcCCCcccccccc--------ccccccCccccceeeeeecccCCCC--Ccchhh
Q 041391 308 PVRKKRRKDVNNRFKMDPLARLAVINSRKPEDLWCKWAR--------LEGLEKGSTQLLTVSALVNVSEQFP--DFQSKW 377 (704)
Q Consensus 308 ~~~~~~~~~~~~~~~mHDll~dla~~i~~~e~~~~~~~~--------~~~~~~~~~~~~~lr~l~~~~~~~~--~~~~~~ 377 (704)
+.. ++++|||++|+||+++++++... ...+ ++.+.....+...++++......+. .+...+
T Consensus 483 ~~~--------~~~~MHdLl~~~~r~i~~~~~~~-~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 483 VRE--------DIVEMHSLLQEMGKEIVRAQSNE-PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred EcC--------CeEEhhhHHHHHHHHHHHhhcCC-CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 753 46999999999999999876421 1111 2222222333345555554433332 233445
Q ss_pred cCCCCCccEEEcCCCC---------------------Ccccchhhhccc----------------------hhhHhccCC
Q 041391 378 FSNLKKVKVLHLGRWK---------------------NSAKHFVEVQGS----------------------KFLKELKNM 414 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~---------------------l~~~~~~~~~~~----------------------~lp~~l~~L 414 (704)
|.+|++|+.|.+..+. ++.+++..++.. .+|..+..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 6666666666664331 111111111122 233445566
Q ss_pred cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391 415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494 (704)
Q Consensus 415 ~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~ 494 (704)
++|++|+|++|..++.+|. ++.+++|++|+|++|..+..+|..+++|++|++|++++|..++.+|..+ ++++|+.|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L-- 709 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRL-- 709 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEE--
Confidence 6777777776666666665 6667777777777776677777777777777777777776666666655 56666666
Q ss_pred cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCC------------------------------
Q 041391 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFK------------------------------ 544 (704)
Q Consensus 495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~------------------------------ 544 (704)
++++|.....++.+ ..+|+.|++++|.+.. ++ ..+ .++
T Consensus 710 ----~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP---~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 710 ----NLSGCSRLKSFPDI---STNISWLDLDETAIEE-FP---SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred ----eCCCCCCccccccc---cCCcCeeecCCCcccc-cc---ccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 34444333333322 2445555555544321 11 111 122
Q ss_pred -CccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC-CCCCcccCCCCCeeEEE
Q 041391 545 -NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP-LESLPNWLSGLNLRKLY 622 (704)
Q Consensus 545 -~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~-l~~lP~~l~~l~L~~L~ 622 (704)
+|+.|+|++|......|........+..+. +..+...+.+|... .+ ++|+.|+|++|. +..+|.... +|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~-Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~~~--nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLE-IENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDIST--NISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEE-CCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccccc--ccCEeE
Confidence 333333333322221111111111111100 01111122333332 22 355555555442 333333211 677777
Q ss_pred EEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 623 IRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 623 Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
|++|.+..+|..+ ..+++|+.|+|.+|+.|. ........+++|+.|++.+|++|+.++.
T Consensus 853 Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 853 LSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCCCCCccChHHH-hcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcccccccC
Confidence 7777777777654 358899999999988887 2222225678899999999999887765
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.2e-21 Score=239.49 Aligned_cols=294 Identities=22% Similarity=0.234 Sum_probs=165.1
Q ss_pred eeeeeecccCCCC-CcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 359 TVSALVNVSEQFP-DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~-~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
.++.+....+.+. .+....|..+++|++|+|++|.+++ .+|. +.+++|++|+|++|...+.+|..+++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---------~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---------SIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---------ccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence 3444444333333 2222334456666666666665432 1221 34666777777776555566777777
Q ss_pred cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCC
Q 041391 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSL 516 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L 516 (704)
+++|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..++++++|++| ++++|.+.+.++ .+. .+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L------~L~~n~l~~~~p~~l~-~l 235 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI------YLGYNNLSGEIPYEIG-GL 235 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE------ECcCCccCCcCChhHh-cC
Confidence 7777777777776666777777777777777777777666777777777777777 466666665443 444 77
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
++|+.|++++|.+.+.++ ..+.++++|+.|++++|.+....+........+..+ .+..+...+.+|..+..+ ++|
T Consensus 236 ~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~~~~l-~~L 310 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIP---SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL-DLSDNSLSGEIPELVIQL-QNL 310 (968)
T ss_pred CCCCEEECcCceeccccC---hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE-ECcCCeeccCCChhHcCC-CCC
Confidence 777777777776654333 566777777777777776544333222211111111 112233334455555554 366
Q ss_pred eEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391 597 EKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674 (704)
Q Consensus 597 ~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~ 674 (704)
+.|++++|.+. .+|.++..+ +|+.|+|++|.+..........+++|+.|+|+++.........+ ..+++|+.|++.+
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~ 389 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFS 389 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcC
Confidence 66666666553 455555555 66666666666642222223335666666666543221000011 2356677777766
Q ss_pred CC
Q 041391 675 CP 676 (704)
Q Consensus 675 C~ 676 (704)
|+
T Consensus 390 n~ 391 (968)
T PLN00113 390 NS 391 (968)
T ss_pred CE
Confidence 54
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1e-21 Score=240.11 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=35.6
Q ss_pred hHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC
Q 041391 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487 (704)
Q Consensus 408 p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~ 487 (704)
|..++++++|++|+|++|...+.+|..++++.+|++|+|++|...+.+|..++++++|++|++++|.+.+.+|..+++++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 33344444444444444433333444444444444444444433334444444444444444444443333444444444
Q ss_pred Cccee
Q 041391 488 ELQVL 492 (704)
Q Consensus 488 ~L~~L 492 (704)
+|++|
T Consensus 261 ~L~~L 265 (968)
T PLN00113 261 NLQYL 265 (968)
T ss_pred CCCEE
Confidence 44444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.6e-20 Score=195.56 Aligned_cols=301 Identities=17% Similarity=0.173 Sum_probs=191.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
..+++....+.+..+....|.++++|+.+.+.+|.++ .+|.......||+.|+|.+|.....-.+++.-+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----------RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh----------hcccccccccceeEEeeeccccccccHHHHHhH
Confidence 3445556667788888888999999999999999876 566666677789999999985433344668889
Q ss_pred ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~ 517 (704)
+.|+.|||+.| .+.++|.. +..-.++++|+|++|.++..--..|..+.+|-+| .++.|.++..++..+.+|+
T Consensus 149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl------kLsrNrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL------KLSRNRITTLPQRSFKRLP 221 (873)
T ss_pred hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheee------ecccCcccccCHHHhhhcc
Confidence 99999999997 56666543 5555789999999999776555668889999999 5999999988877774699
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccc-----
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK----- 592 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l----- 592 (704)
+|+.|++..|++... + ...|.++++|+.|.|..|.+..-....+.....+..+... .|.....-..++..+
T Consensus 222 ~L~~LdLnrN~iriv-e--~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~-~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIV-E--GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE-TNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hhhhhhccccceeee-h--hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc-cchhhhhhcccccccchhhh
Confidence 999999999986422 1 1356777777777777776543332222222222222111 111111111223333
Q ss_pred ------------------ccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391 593 ------------------DRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE 652 (704)
Q Consensus 593 ------------------p~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~ 652 (704)
.+.|++|+|+.|.+.++++. +..+ .|++|.|++|.+..+....+.++.+|+.|+|+++.
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE- 376 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-
Confidence 13444444444444444432 1122 44444444444444444444455555555554422
Q ss_pred ccccccccc-----CcCCCccEEeeecCCCCCCCCCC
Q 041391 653 LNVNWRELQ-----ALFPDLEYLEKFNCPMISFFPCD 684 (704)
Q Consensus 653 L~l~~~~l~-----~~~p~L~~L~i~~C~~L~~lP~~ 684 (704)
++|..-. ..+|+|+.|.+.++ +|+.+|-.
T Consensus 377 --ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr 410 (873)
T KOG4194|consen 377 --LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR 410 (873)
T ss_pred --EEEEEecchhhhccchhhhheeecCc-eeeecchh
Confidence 1222111 34889999999886 77877753
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.6e-20 Score=197.82 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=70.7
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccC-CCcCC
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYY-LTKLP 456 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~-l~~lP 456 (704)
...|+.++-|.|....+. .+|..++.|.+|+.|.+++|. +..+-..++.|+.|+.++++.|+. ...+|
T Consensus 28 v~qMt~~~WLkLnrt~L~----------~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP 96 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLE----------QVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVIVRDNNLKNSGIP 96 (1255)
T ss_pred HHHhhheeEEEechhhhh----------hChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHhhhccccccCCCC
Confidence 344555555555554332 445555555555555555542 333333344444444444444321 12344
Q ss_pred ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
..|.+|..|..|||++|+ +.++|.++..-+++-+| ++++|++...+..++-+|+.|-.|++++|++. .+
T Consensus 97 ~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVL------NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe----~L 165 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVL------NLSYNNIETIPNSLFINLTDLLFLDLSNNRLE----ML 165 (1255)
T ss_pred chhcccccceeeecchhh-hhhcchhhhhhcCcEEE------EcccCccccCCchHHHhhHhHhhhccccchhh----hc
Confidence 444455555555555544 23444444444444444 34444444444333334444444444444432 22
Q ss_pred HHHhccCCCccEEEEEecC
Q 041391 537 SESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~ 555 (704)
|.-+..+.+|++|.|++|+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred CHHHHHHhhhhhhhcCCCh
Confidence 2333444444444444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=8e-20 Score=195.17 Aligned_cols=292 Identities=22% Similarity=0.250 Sum_probs=212.6
Q ss_pred eeeeeecccCCCCC-cchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391 359 TVSALVNVSEQFPD-FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA 436 (704)
Q Consensus 359 ~lr~l~~~~~~~~~-~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~ 436 (704)
.+|++....+.+.. -.|.-+.++..|.+|||++|+++ +.|..+...+++-+|+|++| .+..+|.+ +-
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfi 147 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------EVPTNLEYAKNSIVLNLSYN-NIETIPNSLFI 147 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh----------hcchhhhhhcCcEEEEcccC-ccccCCchHHH
Confidence 45555444443321 12334678999999999999875 77899999999999999997 68889866 56
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCc--cchhhHHh
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKI--CTLEDLGN 514 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~--~~~~~l~~ 514 (704)
+|..|-+|||++| .+..+|+.+..|.+|++|.|++|.+...--..+-.|++|++| .+++.+-+ ..++.+.
T Consensus 148 nLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL------hms~TqRTl~N~Ptsld- 219 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL------HMSNTQRTLDNIPTSLD- 219 (1255)
T ss_pred hhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh------hcccccchhhcCCCchh-
Confidence 8999999999986 789999999999999999999998543222234456677777 35554422 2345666
Q ss_pred CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC--CCcccccccchhhHhhHhhhcCCCCCCccccc
Q 041391 515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC--RNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK 592 (704)
Q Consensus 515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l 592 (704)
.|.||+.++++.|.+ +.+|+.+-++++|+.|+|++|.++.-. ...|.... .+ . ........+|..+..+
T Consensus 220 ~l~NL~dvDlS~N~L----p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE---tL-N-lSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNL----PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE---TL-N-LSRNQLTVLPDAVCKL 290 (1255)
T ss_pred hhhhhhhccccccCC----CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh---hh-c-cccchhccchHHHhhh
Confidence 888999999999865 556688889999999999999865311 11111111 00 0 1123356688888888
Q ss_pred ccceeEEEEEcCCC--CCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccE
Q 041391 593 DRLLEKLDLHCFPL--ESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEY 669 (704)
Q Consensus 593 p~~L~~L~Ls~~~l--~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~ 669 (704)
+ .|+.|.+.+|.+ ..+|+.++.+ +|+.+..++|.+.-+|..... ++.|+.|.|..+.-+.+- .-...+|-|+.
T Consensus 291 ~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR-C~kL~kL~L~~NrLiTLP--eaIHlL~~l~v 366 (1255)
T KOG0444|consen 291 T-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR-CVKLQKLKLDHNRLITLP--EAIHLLPDLKV 366 (1255)
T ss_pred H-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh-hHHHHHhcccccceeech--hhhhhcCCcce
Confidence 5 899999998875 6899999999 999999999999877776554 688999988776544321 11146789999
Q ss_pred EeeecCCCCCCCC
Q 041391 670 LEKFNCPMISFFP 682 (704)
Q Consensus 670 L~i~~C~~L~~lP 682 (704)
|+++.+|+|-.-|
T Consensus 367 LDlreNpnLVMPP 379 (1255)
T KOG0444|consen 367 LDLRENPNLVMPP 379 (1255)
T ss_pred eeccCCcCccCCC
Confidence 9999999987544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=2.8e-19 Score=190.34 Aligned_cols=302 Identities=20% Similarity=0.133 Sum_probs=175.3
Q ss_pred cceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhh
Q 041391 357 LLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA 436 (704)
Q Consensus 357 ~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~ 436 (704)
..++..++..++.++.+....++.++.||+|||+.|.++.+.. .+|..-.++++|+|++|...+.--..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~---------~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK---------PSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC---------CCCCCCCCceEEeecccccccccccccc
Confidence 3356667777777777777777788888888888887664321 2344446777888887743332334577
Q ss_pred ccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-----
Q 041391 437 NLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE----- 510 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----- 510 (704)
+|.+|-+|.|+.| .+..+|. .|.+|++|+.|+|..|.+-..---.|..|.+|+.|. +..|.+...-.
T Consensus 195 ~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk------lqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 195 SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK------LQRNDISKLDDGAFYG 267 (873)
T ss_pred ccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh------hhhcCcccccCcceee
Confidence 7777777777776 4445554 355577777777777764211122355666666662 44444333222
Q ss_pred --------------------hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccc
Q 041391 511 --------------------DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHN 570 (704)
Q Consensus 511 --------------------~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 570 (704)
.++ +|+.|+.|+++.|.+...-. ++....++|+.|+|+.|.+..-.+........+
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~---d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHI---DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeec---chhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 333 55555555555554432211 234445556666666665443222111111111
Q ss_pred hhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCCC----CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCE
Q 041391 571 KKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPLE----SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKV 644 (704)
Q Consensus 571 ~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l~----~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~ 644 (704)
..+. ++.|. ...+. ..|..+ ++|++|+|+.|.+. .-...+..+ .|+.|.+.+|+++.+|...+.+|+.|+.
T Consensus 344 e~Ln-Ls~Ns-i~~l~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 344 EELN-LSHNS-IDHLAEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred hhhc-ccccc-hHHHHhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 1111 00010 01111 122233 57888888877652 212234445 9999999999999999999999999999
Q ss_pred EecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 645 LRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 645 L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
|+|.++..-.+..+.+. .+ .|++|.+..-.-|.++..
T Consensus 421 LdL~~NaiaSIq~nAFe-~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFE-PM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred ecCCCCcceeecccccc-cc-hhhhhhhcccceEEeccH
Confidence 99998877766666664 33 788888776555544444
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=3.8e-16 Score=192.46 Aligned_cols=289 Identities=19% Similarity=0.271 Sum_probs=195.8
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..+++|+.|+|+++... ..+| .++.+++|++|+|++|..+..+|.++++|.+|+.|++++|..++.+|.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l---------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNL---------KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccCCCCCEEECCCCCCc---------CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 455667777777665321 2344 478899999999999988999999999999999999999999999998
Q ss_pred cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh---------------------------
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE--------------------------- 510 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~--------------------------- 510 (704)
.+ ++++|++|++++|..+..+|.. .++|++|. +++|.+...+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~------L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD------LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc---cCCcCeee------cCCCccccccccccccccccccccccchhhcccccccc
Confidence 76 7899999999999877666653 23455552 33333222111
Q ss_pred --hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc
Q 041391 511 --DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT 588 (704)
Q Consensus 511 --~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 588 (704)
......++|+.|++++|..... +|.+++++++|+.|+|++|......|... ....+..+ .+..+.....+|
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~---lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L-~Ls~c~~L~~~p-- 842 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVE---LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL-DLSGCSRLRTFP-- 842 (1153)
T ss_pred chhhhhccccchheeCCCCCCccc---cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE-ECCCCCcccccc--
Confidence 1111235788899988875443 44778999999999999887544444322 11111111 111122222333
Q ss_pred ccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCC-CCCcCCCccCCCCCcCEEecCCCcccc-cccccc-----
Q 041391 589 FGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQ-LRSLQGDTHKKYSTVKVLRLRYLNELN-VNWREL----- 660 (704)
Q Consensus 589 ~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f~~L~~L~L~~l~~L~-l~~~~l----- 660 (704)
..+.+|+.|+|++|.+..+|.++..+ +|+.|+|++|+ +..+|... ..+++|+.|.+.+|..|. +.+...
T Consensus 843 --~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 843 --DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred --ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCCcccccccCCCCchhhh
Confidence 33468999999999999999999888 99999999964 56676654 357899999999999886 222211
Q ss_pred ------cCcCCCccEEeeecCCCCC--------------CCCCCCCCcccccCCCC
Q 041391 661 ------QALFPDLEYLEKFNCPMIS--------------FFPCDANGVWIKESSPE 696 (704)
Q Consensus 661 ------~~~~p~L~~L~i~~C~~L~--------------~lP~~~~~~W~~~~~~~ 696 (704)
...+|....+.+.+|.+|. .+|......|+..+..+
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g 975 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTG 975 (1153)
T ss_pred hhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCccc
Confidence 1235555667788888775 23444445676555444
No 10
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.63 E-value=1.2e-16 Score=167.83 Aligned_cols=187 Identities=16% Similarity=0.221 Sum_probs=120.9
Q ss_pred hhHHHhhhcCcc---cccCCCCCCchHHHHHhhhhhhhhhhhhccccCcchhhhhHHHHHHHHHHhhcC----hHHHhH-
Q 041391 69 LLGKLYRRLPSE---ITTGKKKSSSKEEKEEKSKSKREVNAATNSKSNNDLKQKDNLVKKYLDKIKKDS----TENREK- 140 (704)
Q Consensus 69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~- 140 (704)
++..+.+.|... +.......+..+...+..+.+|-++.-++-.+.. +++.+... ......+. |+....
T Consensus 66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~---~~~~l~~~-~~~~~~~~kilvTTR~~~v 141 (287)
T PF00931_consen 66 LLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE---DLEELREP-LPSFSSGSKILVTTRDRSV 141 (287)
T ss_dssp HHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH---HH--------HCHHSS-EEEEEESCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccceeeeeeecccc---cccccccc-ccccccccccccccccccc
Confidence 455555555433 2233333445566677778888877776544433 44444432 22222121 111111
Q ss_pred ---hh-------chhhhhhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhh
Q 041391 141 ---LG-------ELIKDHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMF 210 (704)
Q Consensus 141 ---~~-------~~~~~~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l 210 (704)
++ .+...+-++++||++.|+......++.+++++++|+++|+|+||| +..+|+.+
T Consensus 142 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa---------------l~~~a~~l 206 (287)
T PF00931_consen 142 AGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA---------------LKLIASYL 206 (287)
T ss_dssp GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH---------------HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------cccccccc
Confidence 11 111223467899999999875334567788999999999999999 78888888
Q ss_pred hccccccchhhHHH---------------HHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccc
Q 041391 211 INFREKFGFDEFME---------------MIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAE 274 (704)
Q Consensus 211 ~~~~~~~~w~~~~~---------------i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~ 274 (704)
+.+.+..+|+.+.+ ++.++.+||+.||+++|.||+|||+||+++.|+++.||++|++||||+..
T Consensus 207 ~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 207 RSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 66666778876543 88899999999999999999999999999999999999999999999643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=1.2e-17 Score=171.04 Aligned_cols=245 Identities=23% Similarity=0.219 Sum_probs=188.5
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+.++..|.+|++++|.++ .+|++++.+..++.|+.++| .+..+|..++.+.+|..|++++| ...++|+
T Consensus 64 l~nL~~l~vl~~~~n~l~----------~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~ 131 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS----------QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN-ELKELPD 131 (565)
T ss_pred hhcccceeEEEeccchhh----------hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc-ceeecCc
Confidence 567888899999999765 67899999999999999997 57889999999999999999986 6778889
Q ss_pred cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS 537 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~ 537 (704)
+++.+..|..|+..+|.+ ..+|.+++.+.+|..| ++.+|++...+++.. .|+.|++|+...|-+ ..+|
T Consensus 132 ~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l------~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L----~tlP 199 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKL------DLEGNKLKALPENHI-AMKRLKHLDCNSNLL----ETLP 199 (565)
T ss_pred hHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHh------hccccchhhCCHHHH-HHHHHHhcccchhhh----hcCC
Confidence 999999999999998884 5788888888888888 588898888888888 789999998887754 3445
Q ss_pred HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc-ccccceeEEEEEcCCCCCCcccCCCC
Q 041391 538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG-QKDRLLEKLDLHCFPLESLPNWLSGL 616 (704)
Q Consensus 538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~lp~~L~~L~Ls~~~l~~lP~~l~~l 616 (704)
..++.+.+|..|++..|.+.. .| .+.....+..+ .......+.+|.... ++ .+|..|+|..|++.++|+.+..+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~El--h~g~N~i~~lpae~~~~L-~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKEL--HVGENQIEMLPAEHLKHL-NSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred hhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHH--HhcccHHHhhHHHHhccc-ccceeeeccccccccCchHHHHh
Confidence 678889999999999888642 22 33332222222 112223344555544 45 48888899999999999888777
Q ss_pred -CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccc
Q 041391 617 -NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL 653 (704)
Q Consensus 617 -~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L 653 (704)
+|++|++++|.++.+|..... + +|+.|.+.+.+.-
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgn-l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGN-L-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhhcccCCccccCCccccc-c-eeeehhhcCCchH
Confidence 889999999998888876554 3 6777777766543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=2.3e-16 Score=161.89 Aligned_cols=261 Identities=23% Similarity=0.247 Sum_probs=196.0
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
..|..|++++|.+. .+-..+.++..|.+|++.+| .+..+|.+++.+..++.|+.++| .+.++|..++.
T Consensus 45 v~l~~lils~N~l~----------~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s 112 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE----------VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS 112 (565)
T ss_pred cchhhhhhccCchh----------hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh
Confidence 45677889999664 34566889999999999997 57889999999999999999997 77899999999
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE 541 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~ 541 (704)
+.+|++|+.+.|.+ ..+|++++.+..|..| +..+|++...+++++ .+.+|..|.+.+|++.... ...-
T Consensus 113 ~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl------~~~~N~i~slp~~~~-~~~~l~~l~~~~n~l~~l~----~~~i 180 (565)
T KOG0472|consen 113 LISLVKLDCSSNEL-KELPDSIGRLLDLEDL------DATNNQISSLPEDMV-NLSKLSKLDLEGNKLKALP----ENHI 180 (565)
T ss_pred hhhhhhhhccccce-eecCchHHHHhhhhhh------hccccccccCchHHH-HHHHHHHhhccccchhhCC----HHHH
Confidence 99999999999985 4788889999999999 588899999999999 9999999999999875433 3444
Q ss_pred cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC-CC-Cee
Q 041391 542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS-GL-NLR 619 (704)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~-~l-~L~ 619 (704)
+++.|++|+...|.+ ...|+.......+..+. ........+| .|+.+ +.|++|+++.|.+..+|..+. .+ +|.
T Consensus 181 ~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~Ly--L~~Nki~~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLL-ETLPPELGGLESLELLY--LRRNKIRFLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred HHHHHHhcccchhhh-hcCChhhcchhhhHHHH--hhhcccccCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccce
Confidence 589999999988774 34444444433333221 1122334455 55555 578999998888888887765 45 899
Q ss_pred EEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-CcCCCccEEeeecCC
Q 041391 620 KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALFPDLEYLEKFNCP 676 (704)
Q Consensus 620 ~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~p~L~~L~i~~C~ 676 (704)
.|+|..|+++++|..+.- +.+|+.|++++...-. -... |.+ .|+.|.+.|+|
T Consensus 256 vLDLRdNklke~Pde~cl-LrsL~rLDlSNN~is~---Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDEICL-LRSLERLDLSNNDISS---LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeccccccccCchHHHH-hhhhhhhcccCCcccc---CCcccccc-eeeehhhcCCc
Confidence 999999999999887643 5667777776642111 1111 444 66777777775
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.1e-13 Score=160.74 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=56.1
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
.|+.|+|++|.++ .+|..+. .+|++|+|++| .+..+|..+. .+|+.|+|++| .+..+|..+.
T Consensus 200 ~L~~L~Ls~N~Lt----------sLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~-- 261 (754)
T PRK15370 200 QITTLILDNNELK----------SLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP-- 261 (754)
T ss_pred CCcEEEecCCCCC----------cCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--
Confidence 4555666655443 2333322 35555565555 3445554332 34555555555 2335554442
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~ 530 (704)
.+|+.|++++|.+. .+|..+. ++|+.| ++++|++...+..+. ++|+.|++++|.+.
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L------~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELRYL------SVYDNSIRTLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCcEE------ECCCCccccCcccch---hhHHHHHhcCCccc
Confidence 35555555555433 3444332 245555 355555444332222 24555555555443
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.2e-13 Score=160.33 Aligned_cols=247 Identities=19% Similarity=0.227 Sum_probs=157.7
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
.+...|+++++.++ .+|..+. ++|+.|+|++| .+..+|..+. .+|++|++++| .+..+|..+.
T Consensus 178 ~~~~~L~L~~~~Lt----------sLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLT----------TIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcC----------cCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh-
Confidence 45678999998776 3454443 57999999998 5778998765 59999999998 5668887664
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE 541 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~ 541 (704)
.+|+.|++++|.+. .+|..+. ++|+.| ++++|.+...+..+. .+|+.|++++|.+... + ..+.
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L------~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~L-P---~~lp 303 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERLP--SALQSL------DLFHNKISCLPENLP---EELRYLSVYDNSIRTL-P---AHLP 303 (754)
T ss_pred -ccccEEECcCCccC-cCChhHh--CCCCEE------ECcCCccCccccccC---CCCcEEECCCCccccC-c---ccch
Confidence 47999999999855 7887664 579999 588888876554444 5899999999987642 2 2221
Q ss_pred cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391 542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL 621 (704)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L 621 (704)
++|+.|++++|.+.. .+.... ..+..+. +.. .....+|..+ |++|+.|+|++|.+..+|..+.. +|+.|
T Consensus 304 --~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~-Ls~-N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~lp~-~L~~L 372 (754)
T PRK15370 304 --SGITHLNVQSNSLTA-LPETLP--PGLKTLE-AGE-NALTSLPASL---PPELQVLDVSKNQITVLPETLPP-TITTL 372 (754)
T ss_pred --hhHHHHHhcCCcccc-CCcccc--ccceecc-ccC-CccccCChhh---cCcccEEECCCCCCCcCChhhcC-CcCEE
Confidence 468888888888653 221111 1111111 111 1223344433 34677777777777766654422 67777
Q ss_pred EEEcCCCCCcCCCccCCCCCcCEEecCCCccccccc--ccccCcCCCccEEeeecCC
Q 041391 622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNW--RELQALFPDLEYLEKFNCP 676 (704)
Q Consensus 622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~--~~l~~~~p~L~~L~i~~C~ 676 (704)
+|++|.+..+|.... ..|+.|+++++..-.+.. ..+...+|.+..|.+.++|
T Consensus 373 dLs~N~Lt~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSRNALTNLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCCcCCCCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777777776665432 356666666643211110 0111334667777777765
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2.5e-15 Score=168.55 Aligned_cols=241 Identities=23% Similarity=0.273 Sum_probs=134.2
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
.+|++++++.|.++ .+|.+++.+.+|..|+..+| .+..+|..+....+|+.|++..| .+..+|.....
T Consensus 241 ~nl~~~dis~n~l~----------~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~ 308 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS----------NLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEG 308 (1081)
T ss_pred ccceeeecchhhhh----------cchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc
Confidence 46777777777664 45677777777887777776 45777777777777777777776 56667777777
Q ss_pred cCCCcEEEccCcccccccCccC-CCCC-CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391 462 LKKLTYLDISECYLIEYMPKEL-SSLS-ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES 539 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i-~~L~-~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~ 539 (704)
++.|++|+|..|. +..+|+.+ ..+. +|..| +.+.|.+...+..-...+..|+.|++.+|.++... ...
T Consensus 309 ~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l------n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c---~p~ 378 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL------NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC---FPV 378 (1081)
T ss_pred cceeeeeeehhcc-ccccchHHHhhhhHHHHHH------hhhhccccccccccchhhHHHHHHHHhcCcccccc---hhh
Confidence 7777788777776 34555532 1121 14444 23444333322111113445666666666655432 234
Q ss_pred hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc-ccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391 540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT-FGQKDRLLEKLDLHCFPLESLPNWLSGL-N 617 (704)
Q Consensus 540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~ 617 (704)
|.++.+|+.|+|++|.+.. +|.. +.++ ..|++|+|+||.++.+|..+..+ .
T Consensus 379 l~~~~hLKVLhLsyNrL~~--------------------------fpas~~~kl-e~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNS--------------------------FPASKLRKL-EELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred hccccceeeeeeccccccc--------------------------CCHHHHhch-HHhHHHhcccchhhhhhHHHHhhhh
Confidence 5666666666666665422 2221 1222 35566666666666666555555 5
Q ss_pred eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-CcC-CCccEEeeecCC
Q 041391 618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALF-PDLEYLEKFNCP 676 (704)
Q Consensus 618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~-p~L~~L~i~~C~ 676 (704)
|+.|...+|.+..+|.. ..++.|++++++.+ .|+ ...+. ... |+|++|+++|++
T Consensus 432 L~tL~ahsN~l~~fPe~--~~l~qL~~lDlS~N-~L~--~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFPEL--AQLPQLKVLDLSCN-NLS--EVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCceeechhh--hhcCcceEEecccc-hhh--hhhhhhhCCCcccceeeccCCc
Confidence 66666666666555521 22555555555432 222 11111 112 456666666555
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=3.1e-15 Score=137.14 Aligned_cols=156 Identities=27% Similarity=0.372 Sum_probs=133.0
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..|.+++.|.|++|.++ .+|+.+..+.+|+.|++++| .+.++|.+++.|+.|++|+++-| .+..+|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~----------~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lpr 96 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT----------VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPR 96 (264)
T ss_pred ccchhhhhhhhcccCcee----------ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCcc
Confidence 456788888999999776 56888999999999999997 58899999999999999999986 6788999
Q ss_pred cccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 458 GLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
+|+.++.|+.||+++|.+.+ .+|..|..|+.|+.|+ ++.|.+.-.+++++ ++++|+.|.+..|.+. .+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlraly------l~dndfe~lp~dvg-~lt~lqil~lrdndll----~l 165 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY------LGDNDFEILPPDVG-KLTNLQILSLRDNDLL----SL 165 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHH------hcCCCcccCChhhh-hhcceeEEeeccCchh----hC
Confidence 99999999999999887654 5777788888888885 88888888888999 9999999999988653 45
Q ss_pred HHHhccCCCccEEEEEecCC
Q 041391 537 SESLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~l 556 (704)
|..++.+++|++|++.+|++
T Consensus 166 pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cHHHHHHHHHHHHhccccee
Confidence 57788999999999999885
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-15 Score=137.69 Aligned_cols=165 Identities=29% Similarity=0.359 Sum_probs=138.5
Q ss_pred ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~ 490 (704)
+..+.+...|.|++| .+..+|..|..|.+|++|++++| .++++|..+..|++|++|+++-|+ +..+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 456778889999998 57888888999999999999986 789999999999999999999987 568999999999999
Q ss_pred eecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccc
Q 041391 491 VLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNE 568 (704)
Q Consensus 491 ~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 568 (704)
.| ++.+|++... +..++ .|+.|+.|+++.|.+. .+|..++++++|+.|.+..|.+.+
T Consensus 106 vl------dltynnl~e~~lpgnff-~m~tlralyl~dndfe----~lp~dvg~lt~lqil~lrdndll~---------- 164 (264)
T KOG0617|consen 106 VL------DLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE----ILPPDVGKLTNLQILSLRDNDLLS---------- 164 (264)
T ss_pred hh------hccccccccccCCcchh-HHHHHHHHHhcCCCcc----cCChhhhhhcceeEEeeccCchhh----------
Confidence 99 6888877653 35677 8889999999999764 344678899999999999888432
Q ss_pred cchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC
Q 041391 569 HNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL 616 (704)
Q Consensus 569 ~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l 616 (704)
+|..++.+ ..|++|++.+|.+..+|..+..+
T Consensus 165 ----------------lpkeig~l-t~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 165 ----------------LPKEIGDL-TRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ----------------CcHHHHHH-HHHHHHhcccceeeecChhhhhh
Confidence 67777777 58999999999998888876654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=6.1e-13 Score=153.75 Aligned_cols=235 Identities=21% Similarity=0.115 Sum_probs=157.1
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
.+|+.|++.+|.++. +|. .+++|++|+|++| .++.+|.. ..+|+.|++++| .+..+|..
T Consensus 222 ~~L~~L~L~~N~Lt~----------LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l--- 280 (788)
T PRK15387 222 AHITTLVIPDNNLTS----------LPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-PLTHLPAL--- 280 (788)
T ss_pred cCCCEEEccCCcCCC----------CCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC-chhhhhhc---
Confidence 378888898887763 332 2478899999987 56677753 467888999887 45566653
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE 541 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~ 541 (704)
..+|+.|++++|.+. .+|. .+++|+.| ++++|.+... +.+. .+|+.|++++|.+.. ++.++
T Consensus 281 p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~L------dLS~N~L~~L-p~lp---~~L~~L~Ls~N~L~~-LP~lp---- 341 (788)
T PRK15387 281 PSGLCKLWIFGNQLT-SLPV---LPPGLQEL------SVSDNQLASL-PALP---SELCKLWAYNNQLTS-LPTLP---- 341 (788)
T ss_pred hhhcCEEECcCCccc-cccc---ccccccee------ECCCCccccC-CCCc---ccccccccccCcccc-ccccc----
Confidence 356888999998754 5665 24678888 5888887754 3333 467888898888753 33221
Q ss_pred cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391 542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL 621 (704)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L 621 (704)
.+|+.|+|++|.+.. .|... ..+..+ .+..| ....+|. .+.+|+.|+|++|.+..+|.... +|+.|
T Consensus 342 --~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L-~Ls~N-~L~~LP~----l~~~L~~LdLs~N~Lt~LP~l~s--~L~~L 407 (788)
T PRK15387 342 --SGLQELSVSDNQLAS-LPTLP---SELYKL-WAYNN-RLTSLPA----LPSGLKELIVSGNRLTSLPVLPS--ELKEL 407 (788)
T ss_pred --cccceEecCCCccCC-CCCCC---ccccee-hhhcc-ccccCcc----cccccceEEecCCcccCCCCccc--CCCEE
Confidence 479999999998764 33211 111111 11222 2334543 34689999999999988886543 89999
Q ss_pred EEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCC
Q 041391 622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP 676 (704)
Q Consensus 622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~ 676 (704)
++++|.+..+|.. +.+|+.|+|+++..-.+.. . ...+++|+.|++.+++
T Consensus 408 dLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~-s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 408 MVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPE-S-LIHLSSETTVNLEGNP 456 (788)
T ss_pred EccCCcCCCCCcc----hhhhhhhhhccCcccccCh-H-HhhccCCCeEECCCCC
Confidence 9999999888753 3567777777644222111 1 1457899999999985
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-14 Score=162.81 Aligned_cols=257 Identities=22% Similarity=0.250 Sum_probs=188.7
Q ss_pred eeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccC
Q 041391 362 ALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNL 441 (704)
Q Consensus 362 ~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L 441 (704)
.+....+.+..+. .|+..+.+|..|+..+|.++ .+|..+.....|++|...+| .+..+|....++++|
T Consensus 245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~----------~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL 312 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLV----------ALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSL 312 (1081)
T ss_pred eeecchhhhhcch-HHHHhcccceEecccchhHH----------hhHHHHhhhhhHHHHHhhhh-hhhhCCCccccccee
Confidence 3333344455544 88999999999999999775 78899999999999999998 688999988889999
Q ss_pred cEEeeecccCCCcCCccccc-cC-CCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccc-hhhHHhCCC
Q 041391 442 RVLDLRCCYYLTKLPKGLDS-LK-KLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICT-LEDLGNSLK 517 (704)
Q Consensus 442 ~~LdLs~c~~l~~lP~~i~~-L~-~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~-~~~l~~~L~ 517 (704)
++|+|..| .+..+|..+-. +. .|+.|+.+.|.+ ...|. +=..+..|+.|+ +.+|.++.. +|.+. ++.
T Consensus 313 ~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Ly------lanN~Ltd~c~p~l~-~~~ 383 (1081)
T KOG0618|consen 313 RTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELY------LANNHLTDSCFPVLV-NFK 383 (1081)
T ss_pred eeeeehhc-cccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHH------HhcCcccccchhhhc-ccc
Confidence 99999997 77888875432 33 377788777763 34442 123566788885 888887765 57777 999
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccccccee
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE 597 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~ 597 (704)
+|+.|++++|++.. .++ ..+.+++.|+.|+|++|.+.. +|..+..+ ..|+
T Consensus 384 hLKVLhLsyNrL~~-fpa--s~~~kle~LeeL~LSGNkL~~--------------------------Lp~tva~~-~~L~ 433 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNS-FPA--SKLRKLEELEELNLSGNKLTT--------------------------LPDTVANL-GRLH 433 (1081)
T ss_pred ceeeeeeccccccc-CCH--HHHhchHHhHHHhcccchhhh--------------------------hhHHHHhh-hhhH
Confidence 99999999998763 343 578999999999999999543 56666666 4788
Q ss_pred EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391 598 KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674 (704)
Q Consensus 598 ~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~ 674 (704)
+|...+|.+..+| .+..+ .|+.+||+.|++..+.......-|+|++|+|+++..+.+.. ..||.++.+...+
T Consensus 434 tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~----~~l~~l~~l~~~~ 506 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH----KTLKVLKSLSQMD 506 (1081)
T ss_pred HHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch----hhhHHhhhhhhee
Confidence 8888888888888 45555 88888888888855432222222788888888876654322 2345555544443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=1.9e-12 Score=149.68 Aligned_cols=216 Identities=24% Similarity=0.104 Sum_probs=136.7
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
+++|++|+|++|.++. +|. ..++|+.|+|++| .+..+|... .+|+.|+|++| .+..+|..
T Consensus 241 p~~Lk~LdLs~N~Lts----------LP~---lp~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~-- 300 (788)
T PRK15387 241 PPELRTLEVSGNQLTS----------LPV---LPPGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN-QLTSLPVL-- 300 (788)
T ss_pred CCCCcEEEecCCccCc----------ccC---cccccceeeccCC-chhhhhhch---hhcCEEECcCC-cccccccc--
Confidence 5789999999998863 332 1357788888887 466676532 56778888887 45667653
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHh
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESL 540 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L 540 (704)
+++|++|++++|.+. .+|... .+|+.| .+++|.+.. +|.+. .+|+.|++++|++.. ++.+
T Consensus 301 -p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L------~Ls~N~L~~-LP~lp---~~Lq~LdLS~N~Ls~-LP~l---- 360 (788)
T PRK15387 301 -PPGLQELSVSDNQLA-SLPALP---SELCKL------WAYNNQLTS-LPTLP---SGLQELSVSDNQLAS-LPTL---- 360 (788)
T ss_pred -ccccceeECCCCccc-cCCCCc---cccccc------ccccCcccc-ccccc---cccceEecCCCccCC-CCCC----
Confidence 467888888888754 455422 245555 356666553 33322 467777777777653 2221
Q ss_pred ccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeE
Q 041391 541 EKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRK 620 (704)
Q Consensus 541 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~ 620 (704)
..+|+.|++++|.+.. .+... ..+..+ .+..| ....+|. .+++|+.|++++|.+..+|.... +|+.
T Consensus 361 --p~~L~~L~Ls~N~L~~-LP~l~---~~L~~L-dLs~N-~Lt~LP~----l~s~L~~LdLS~N~LssIP~l~~--~L~~ 426 (788)
T PRK15387 361 --PSELYKLWAYNNRLTS-LPALP---SGLKEL-IVSGN-RLTSLPV----LPSELKELMVSGNRLTSLPMLPS--GLLS 426 (788)
T ss_pred --Ccccceehhhcccccc-Ccccc---cccceE-EecCC-cccCCCC----cccCCCEEEccCCcCCCCCcchh--hhhh
Confidence 1355666666666542 22111 011111 11111 1223443 34689999999999999986543 7889
Q ss_pred EEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 621 LYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 621 L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
|++++|.++.+|.... .+++|+.|+|++++
T Consensus 427 L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~ 456 (788)
T PRK15387 427 LSVYRNQLTRLPESLI-HLSSETTVNLEGNP 456 (788)
T ss_pred hhhccCcccccChHHh-hccCCCeEECCCCC
Confidence 9999999999987644 47899999998865
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=1.7e-13 Score=145.81 Aligned_cols=265 Identities=20% Similarity=0.118 Sum_probs=148.8
Q ss_pred hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCC------CCCchhhhccccCcEEeeeccc
Q 041391 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI------REIPSSIANLSNLRVLDLRCCY 450 (704)
Q Consensus 377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l------~~lP~~l~~L~~L~~LdLs~c~ 450 (704)
.|..+.+|++|+++++.++... ...++..+...+.|++|+++++... ..++..+..+++|+.|++++|.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~-----~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEA-----AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHH-----HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3556667888888888664311 1245666777777888888876432 1133456667788888888876
Q ss_pred CCCcCCccccccCC---CcEEEccCccccc----ccCccCCCC-CCcceecccccccCCCCCCccc----h-hhHHhCCC
Q 041391 451 YLTKLPKGLDSLKK---LTYLDISECYLIE----YMPKELSSL-SELQVLKGFLVTDAKPNDKICT----L-EDLGNSLK 517 (704)
Q Consensus 451 ~l~~lP~~i~~L~~---L~~L~Ls~n~~~~----~lP~~i~~L-~~L~~L~~~~~~~ls~n~l~~~----~-~~l~~~L~ 517 (704)
.....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.| ++++|.+... + ..+. .++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L------~L~~n~l~~~~~~~~~~~~~-~~~ 165 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL------VLGRNRLEGASCEALAKALR-ANR 165 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE------EcCCCcCCchHHHHHHHHHH-hCC
Confidence 65555555555555 8888888876542 222334455 677777 4777766522 1 2233 666
Q ss_pred CCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 518 ELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
+|+.|++++|.+.+. .+.++..+..+++|+.|++++|.+.... ...+...+..+ ++|
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---------------------~~~l~~~~~~~-~~L 223 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---------------------ASALAETLASL-KSL 223 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH---------------------HHHHHHHhccc-CCC
Confidence 788888887776532 2334455666678888888777643110 00011222233 378
Q ss_pred eEEEEEcCCCCC-----CcccCCC-C-CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCccccccccccc---C
Q 041391 597 EKLDLHCFPLES-----LPNWLSG-L-NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWRELQ---A 662 (704)
Q Consensus 597 ~~L~Ls~~~l~~-----lP~~l~~-l-~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~ 662 (704)
++|++++|.+.. +...+.. . .|++|++++|.++.... .....+++|+.++++++..-+-....+. .
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 888888776643 1112211 2 77888888877642110 1122346677777766443221001111 2
Q ss_pred cC-CCccEEeeecC
Q 041391 663 LF-PDLEYLEKFNC 675 (704)
Q Consensus 663 ~~-p~L~~L~i~~C 675 (704)
.+ +.|+.|+|.+.
T Consensus 304 ~~~~~~~~~~~~~~ 317 (319)
T cd00116 304 EPGNELESLWVKDD 317 (319)
T ss_pred hcCCchhhcccCCC
Confidence 33 56666666554
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=142.11 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=84.6
Q ss_pred ccccccceeEEEEEcCCCCCCc-ccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCC
Q 041391 589 FGQKDRLLEKLDLHCFPLESLP-NWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPD 666 (704)
Q Consensus 589 ~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~ 666 (704)
|..+ ++|++|+|++|.++.+- .|+..+ .+++|.|..|++..+....+.++..|+.|+|.++..-.+.|..+. ..-+
T Consensus 270 f~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~~~ 347 (498)
T KOG4237|consen 270 FKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TLFS 347 (498)
T ss_pred Hhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-ccce
Confidence 4455 49999999999998774 677777 999999999999999998999999999999988766556665553 4568
Q ss_pred ccEEeeecCCCCCCCCCCCCCcccccCCC
Q 041391 667 LEYLEKFNCPMISFFPCDANGVWIKESSP 695 (704)
Q Consensus 667 L~~L~i~~C~~L~~lP~~~~~~W~~~~~~ 695 (704)
|..|.+..+|-...+-..+.+.|++....
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~ 376 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRKKSV 376 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhhCCC
Confidence 88999999888777777766777766553
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=7.5e-13 Score=140.94 Aligned_cols=254 Identities=22% Similarity=0.123 Sum_probs=170.5
Q ss_pred EEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCC----CCCchhhhccccCcEEeeecccCC------CcC
Q 041391 386 VLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGI----REIPSSIANLSNLRVLDLRCCYYL------TKL 455 (704)
Q Consensus 386 ~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l----~~lP~~l~~L~~L~~LdLs~c~~l------~~l 455 (704)
.|+|..+.++.. ..+..+..+.+|++|++++|... ..++..+...++|++|+++++... ..+
T Consensus 2 ~l~L~~~~l~~~--------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~ 73 (319)
T cd00116 2 QLSLKGELLKTE--------RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73 (319)
T ss_pred ccccccCccccc--------chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHH
Confidence 366766665432 33455667777999999998532 235666777888999999987543 223
Q ss_pred CccccccCCCcEEEccCcccccccCccCCCCCC---cceecccccccCCCCCCccc-----hhhHHhCC-CCCcEEEEEe
Q 041391 456 PKGLDSLKKLTYLDISECYLIEYMPKELSSLSE---LQVLKGFLVTDAKPNDKICT-----LEDLGNSL-KELRKLSIYV 526 (704)
Q Consensus 456 P~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~---L~~L~~~~~~~ls~n~l~~~-----~~~l~~~L-~~L~~L~L~~ 526 (704)
+..+..+++|++|++++|.+....+..+..+.+ |++| ++++|.+... ...+. .+ ++|+.|++++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L------~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~ 146 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQEL------KLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGR 146 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEE------EeeCCccchHHHHHHHHHHH-hCCCCceEEEcCC
Confidence 456778899999999999876555555555554 9999 5888876632 12344 66 8999999999
Q ss_pred eCCCCch-hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC
Q 041391 527 NNNAIPI-EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP 605 (704)
Q Consensus 527 n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~ 605 (704)
|.+.... ..+...+..+++|++|++++|.+.... . ..++..+... ++|+.|+|++|.
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------------~---------~~l~~~l~~~-~~L~~L~L~~n~ 204 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAG------------I---------RALAEGLKAN-CNLEVLDLNNNG 204 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH------------H---------HHHHHHHHhC-CCCCEEeccCCc
Confidence 9987432 345567888899999999998854210 0 0011222233 489999999998
Q ss_pred CCC-----CcccCCCC-CeeEEEEEcCCCCCcCC-----CccCCCCCcCEEecCCCccccccccccc---CcCCCccEEe
Q 041391 606 LES-----LPNWLSGL-NLRKLYIRGGQLRSLQG-----DTHKKYSTVKVLRLRYLNELNVNWRELQ---ALFPDLEYLE 671 (704)
Q Consensus 606 l~~-----lP~~l~~l-~L~~L~Ls~n~l~~lp~-----~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~~~p~L~~L~ 671 (704)
+.. ++..+... +|++|++++|.+..... ......+.|+.|++.+|..-+.....+. ..+++|++|+
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 753 33344445 89999999998854211 1111247899999998854321111121 4568899999
Q ss_pred eecCC
Q 041391 672 KFNCP 676 (704)
Q Consensus 672 i~~C~ 676 (704)
+.+|.
T Consensus 285 l~~N~ 289 (319)
T cd00116 285 LRGNK 289 (319)
T ss_pred CCCCC
Confidence 99873
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=2.4e-11 Score=143.53 Aligned_cols=287 Identities=24% Similarity=0.239 Sum_probs=183.4
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCC-CCCCch-hhhccccCcEEeeecccCCCcCC
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYG-IREIPS-SIANLSNLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~-l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP 456 (704)
......|.+.+.+|.+. .++... ..+.|+.|-+.+|.. +..++. .|..++.|++|||++|...+++|
T Consensus 520 ~~~~~~rr~s~~~~~~~----------~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE----------HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cchhheeEEEEeccchh----------hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 34456778888777542 233332 445799999999752 555554 47789999999999999999999
Q ss_pred ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
..|+.|.+||+|+++++. ...+|.++++|..|.+| ++..+.....++.+...|.+|++|.+....... ....
T Consensus 589 ~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~L------nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~ 660 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYL------NLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLL 660 (889)
T ss_pred hHHhhhhhhhcccccCCC-ccccchHHHHHHhhhee------ccccccccccccchhhhcccccEEEeecccccc-chhh
Confidence 999999999999999998 45899999999999999 466555444555555369999999998765222 1223
Q ss_pred HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH-hhH-hhhcCCCCCCcccccccceeEEEEEcCCCCC------
Q 041391 537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE-DEA-ETQGKGGLDGTFGQKDRLLEKLDLHCFPLES------ 608 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~------ 608 (704)
...+.++.+|+.|.+..... ... ........+.... .+. ........+..+..+ .+|+.|.+.+|.+.+
T Consensus 661 l~el~~Le~L~~ls~~~~s~-~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV-LLL-EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred HHhhhcccchhhheeecchh-HhH-hhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCchhhcccc
Confidence 35677788888887754442 000 0000000000000 000 011122233444455 488888888776532
Q ss_pred --------C----------------cccCCCC-CeeEEEEEcCCCCCcCCCc----------cCCCCCcCEE-ecCCCcc
Q 041391 609 --------L----------------PNWLSGL-NLRKLYIRGGQLRSLQGDT----------HKKYSTVKVL-RLRYLNE 652 (704)
Q Consensus 609 --------l----------------P~~l~~l-~L~~L~Ls~n~l~~lp~~~----------~~~f~~L~~L-~L~~l~~ 652 (704)
+ +.|.... +|+.|.+..|...+.|... ...|+++..+ .+.+++.
T Consensus 738 ~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~ 817 (889)
T KOG4658|consen 738 ESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGG 817 (889)
T ss_pred cccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCC
Confidence 1 1222222 9999999999875444322 2234555555 3444444
Q ss_pred cc-cccccccCcCCCccEEeeecCCCCCCCCCCCCCcc
Q 041391 653 LN-VNWRELQALFPDLEYLEKFNCPMISFFPCDANGVW 689 (704)
Q Consensus 653 L~-l~~~~l~~~~p~L~~L~i~~C~~L~~lP~~~~~~W 689 (704)
+. +.|..+ .+|+|+.+.+..||++..+|.++....
T Consensus 818 l~~i~~~~l--~~~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 818 LPQLYWLPL--SFLKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred CceeEeccc--CccchhheehhcCcccccCccccccce
Confidence 44 344444 567799999999999999999865433
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.19 E-value=1.5e-12 Score=134.04 Aligned_cols=245 Identities=22% Similarity=0.233 Sum_probs=157.0
Q ss_pred eeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhcccc
Q 041391 362 ALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSN 440 (704)
Q Consensus 362 ~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~ 440 (704)
.+....+.+..+.+.+|+.+++||.|||++|.++.+ -|.+|.++..|-.|-+.+|..++.+|. .|++|..
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I---------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI---------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhc---------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 344556777778888999999999999999988743 378899999999988888668999995 5889999
Q ss_pred CcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccc--hh-------
Q 041391 441 LRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICT--LE------- 510 (704)
Q Consensus 441 L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~--~~------- 510 (704)
|+.|.+.-|...-.....+..|++|..|.+..|. ...++. .+..+.+++++. +..|.+... ++
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh------lA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH------LAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh------hhcCccccccccchhhhHHh
Confidence 9999999886655666778999999999999887 445665 466777777763 222221100 00
Q ss_pred ----h------------------------HHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCC
Q 041391 511 ----D------------------------LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRN 562 (704)
Q Consensus 511 ----~------------------------l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~ 562 (704)
+ +.+.+..+..--.+.+......|+ ..|.++++|+.|+|++|.+....
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~--~cf~~L~~L~~lnlsnN~i~~i~-- 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA--KCFKKLPNLRKLNLSNNKITRIE-- 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH--HHHhhcccceEeccCCCccchhh--
Confidence 0 000001111001111212222232 35788888888888888864321
Q ss_pred cccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC-CC-CeeEEEEEcCCCCCcCCCccCCCC
Q 041391 563 QEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS-GL-NLRKLYIRGGQLRSLQGDTHKKYS 640 (704)
Q Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~-~l-~L~~L~Ls~n~l~~lp~~~~~~f~ 640 (704)
+.+|... ..+++|.|..|++..+...+. .+ .|+.|+|++|+++.+....++.+.
T Consensus 291 -----------------------~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 291 -----------------------DGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred -----------------------hhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 1233333 366777777776655544332 23 677777777777666555555556
Q ss_pred CcCEEecCCC
Q 041391 641 TVKVLRLRYL 650 (704)
Q Consensus 641 ~L~~L~L~~l 650 (704)
+|..|+|-.+
T Consensus 347 ~l~~l~l~~N 356 (498)
T KOG4237|consen 347 SLSTLNLLSN 356 (498)
T ss_pred eeeeeehccC
Confidence 6666666543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=2.8e-11 Score=129.99 Aligned_cols=191 Identities=30% Similarity=0.356 Sum_probs=128.0
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
.-...||+.|++. ++|..++.+..|..|.|+.| .+..+|..+++|..|.+|||+.| .+..+|..+..|
T Consensus 76 dt~~aDlsrNR~~----------elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l 143 (722)
T KOG0532|consen 76 DTVFADLSRNRFS----------ELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL 143 (722)
T ss_pred chhhhhccccccc----------cCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC
Confidence 3345677777654 56777777777888888876 56778888888888888888876 566777777766
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
+ |+.|-+++|+ ++.+|..++.+..|..| +.+.|++...++.++ .+.+|+.|.+..|++. .+|..+..
T Consensus 144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~l------d~s~nei~slpsql~-~l~slr~l~vrRn~l~----~lp~El~~ 210 (722)
T KOG0532|consen 144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHL------DVSKNEIQSLPSQLG-YLTSLRDLNVRRNHLE----DLPEELCS 210 (722)
T ss_pred c-ceeEEEecCc-cccCCcccccchhHHHh------hhhhhhhhhchHHhh-hHHHHHHHHHhhhhhh----hCCHHHhC
Confidence 4 7777777776 45777777777777777 577777777777777 7777777777777653 22233443
Q ss_pred CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC----Ce
Q 041391 543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL----NL 618 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l----~L 618 (704)
| .|..|+++.|++. .||-.|.++ .+|++|-|.+|.+.+=|..+... =.
T Consensus 211 L-pLi~lDfScNkis--------------------------~iPv~fr~m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKIS--------------------------YLPVDFRKM-RHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred C-ceeeeecccCcee--------------------------ecchhhhhh-hhheeeeeccCCCCCChHHHHhccceeee
Confidence 3 4666666666642 255555555 46777777777766665544332 44
Q ss_pred eEEEEEcC
Q 041391 619 RKLYIRGG 626 (704)
Q Consensus 619 ~~L~Ls~n 626 (704)
++|++..|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 55666666
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.4e-10 Score=124.64 Aligned_cols=156 Identities=26% Similarity=0.306 Sum_probs=132.0
Q ss_pred hcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391 377 WFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 377 ~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP 456 (704)
.+..|..|..|.|+.|.+. .+|..++++..|.||+|+.| .+..+|..++.|+ |++|-+++| .++.+|
T Consensus 93 ~~~~f~~Le~liLy~n~~r----------~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp 159 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIR----------TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLP 159 (722)
T ss_pred HHHHHHHHHHHHHHhccce----------ecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCC
Confidence 3566777888889888665 57888999999999999997 5788999899886 999999976 788999
Q ss_pred ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
..++.+..|.+|+.+.|. +..+|..++.+.+|+.| ++..|++...++++. .|+ |..|++++|++. .+
T Consensus 160 ~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l------~vrRn~l~~lp~El~-~Lp-Li~lDfScNkis----~i 226 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDL------NVRRNHLEDLPEELC-SLP-LIRLDFSCNKIS----YL 226 (722)
T ss_pred cccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHH------HHhhhhhhhCCHHHh-CCc-eeeeecccCcee----ec
Confidence 999999999999999998 45788889999999999 588888888888888 664 889999999875 33
Q ss_pred HHHhccCCCccEEEEEecCCCC
Q 041391 537 SESLEKFKNLLKLKIAWGAGYS 558 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~l~~ 558 (704)
|..|.+|++|++|.|.+|.+.+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC
Confidence 4778999999999999998653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=6.6e-09 Score=99.59 Aligned_cols=131 Identities=27% Similarity=0.295 Sum_probs=44.5
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
.+...++.|+|.+|.++.+ +.++ .+.+|+.|+|++| .+..++. +..|++|++|++++| .+..++.
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-----------e~L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N-~I~~i~~ 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-----------ENLGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNN-RISSISE 81 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CH
T ss_pred ccccccccccccccccccc-----------cchhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCC-CCCcccc
Confidence 4455678888888866532 2344 4677888888887 5666764 777888888888876 4555654
Q ss_pred cc-cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 458 GL-DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 458 ~i-~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
.+ ..+++|++|++++|.+. .+..+.. +. .+++|+.|++.+|.+.....--
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~--------~l~~l~~--------------------L~-~l~~L~~L~L~~NPv~~~~~YR 132 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS--------DLNELEP--------------------LS-SLPKLRVLSLEGNPVCEKKNYR 132 (175)
T ss_dssp HHHHH-TT--EEE-TTS-----------SCCCCGG--------------------GG-G-TT--EEE-TT-GGGGSTTHH
T ss_pred chHHhCCcCCEEECcCCcCC--------ChHHhHH--------------------HH-cCCCcceeeccCCcccchhhHH
Confidence 55 35788888888887632 2222222 22 5566777777777654332222
Q ss_pred HHHhccCCCccEEEEE
Q 041391 537 SESLEKFKNLLKLKIA 552 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls 552 (704)
...+..+++|+.|+-.
T Consensus 133 ~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 133 LFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT-SEETTE
T ss_pred HHHHHHcChhheeCCE
Confidence 2346667777777654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.5e-09 Score=110.20 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=32.0
Q ss_pred cCCcccceeeeeccCCCCCCch--hhhccccCcEEeeecccCCCc---CCccccccCCCcEEEccCcc
Q 041391 412 KNMSALRLLSLQGVYGIREIPS--SIANLSNLRVLDLRCCYYLTK---LPKGLDSLKKLTYLDISECY 474 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~~lP~--~l~~L~~L~~LdLs~c~~l~~---lP~~i~~L~~L~~L~Ls~n~ 474 (704)
.++..||...|.++ .+...+. ....|++++.|||++| .... +-.-...|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 45666666666664 3444442 3455666666666665 2221 11223455566666666554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=1.7e-08 Score=111.14 Aligned_cols=179 Identities=34% Similarity=0.400 Sum_probs=103.9
Q ss_pred ccCCcccceeeeeccCCCCCCchhhhccc-cCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCc
Q 041391 411 LKNMSALRLLSLQGVYGIREIPSSIANLS-NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL 489 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~-~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L 489 (704)
+..+..+..|++.+| .+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|.+ ..+|...+.+++|
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhh
Confidence 344466666666665 4566666555553 6777777665 4555555666666777777766663 3455544466666
Q ss_pred ceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391 490 QVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH 569 (704)
Q Consensus 490 ~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 569 (704)
+.| .+++|.+......+. .+..|+.|.+++|... ..+..+.++.++..|.+..|.+..
T Consensus 189 ~~L------~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~----~~~~~~~~~~~l~~l~l~~n~~~~----------- 246 (394)
T COG4886 189 NNL------DLSGNKISDLPPEIE-LLSALEELDLSNNSII----ELLSSLSNLKNLSGLELSNNKLED----------- 246 (394)
T ss_pred hhe------eccCCccccCchhhh-hhhhhhhhhhcCCcce----ecchhhhhcccccccccCCceeee-----------
Confidence 666 466666555444433 4455666666666421 112345556666666655555221
Q ss_pred chhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCc
Q 041391 570 NKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSL 631 (704)
Q Consensus 570 ~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~l 631 (704)
++..+..+ .+|+.|++++|.+..++. +..+ +|+.|+++++.+...
T Consensus 247 ---------------~~~~~~~l-~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 247 ---------------LPESIGNL-SNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------------ccchhccc-cccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 12233333 357777777777777765 5555 777777777766444
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=6.2e-08 Score=112.29 Aligned_cols=78 Identities=24% Similarity=0.416 Sum_probs=41.0
Q ss_pred hhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCC
Q 041391 407 FLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELS 484 (704)
Q Consensus 407 lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~ 484 (704)
+|..++.+++|++|+|++|...+.+|..++.+++|++|+|++|...+.+|..+++|++|++|+|++|.+.+.+|..++
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 344455555555555555544445555555555555555555544455555555555555555555555555554443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.3e-08 Score=101.83 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=111.2
Q ss_pred CchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-
Q 041391 431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL- 509 (704)
Q Consensus 431 lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~- 509 (704)
+|-.+.-+.+|..+.++.|. ...+-.-...-+.|+++.+.+.. +...|. +-..+.+..+. .-...-..+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~~-l~pe~~~~D~~-----~~E~~t~~G~~~ 277 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVPS-LLPETILADPS-----GSEPSTSNGSAL 277 (490)
T ss_pred cccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cccccc-ccchhhhcCcc-----CCCCCccCCceE
Confidence 34345556677777777762 22222212223456677665543 112221 22222222221 00011111111
Q ss_pred hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcc
Q 041391 510 EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTF 589 (704)
Q Consensus 510 ~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 589 (704)
..+. ..+.|+.|++++|.+. .+-++..-++.++.|+++.|.+... ..+
T Consensus 278 ~~~d-TWq~LtelDLS~N~I~----~iDESvKL~Pkir~L~lS~N~i~~v---------------------------~nL 325 (490)
T KOG1259|consen 278 VSAD-TWQELTELDLSGNLIT----QIDESVKLAPKLRRLILSQNRIRTV---------------------------QNL 325 (490)
T ss_pred Eecc-hHhhhhhccccccchh----hhhhhhhhccceeEEeccccceeee---------------------------hhh
Confidence 1222 4456778888887654 2235666677888888888875321 113
Q ss_pred cccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCcc
Q 041391 590 GQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLE 668 (704)
Q Consensus 590 ~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~ 668 (704)
..+ .+|+.|+|++|.+..+-.|-..+ |++.|.|++|.+.++.+. ..+-+|..|+++++..-++.--.-.|.+|+|+
T Consensus 326 a~L-~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 326 AEL-PQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGL--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhc-ccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhh--HhhhhheeccccccchhhHHHhcccccccHHH
Confidence 344 37888888888887777776666 888888888887666543 22456666666654322222222227788888
Q ss_pred EEeeecCCC
Q 041391 669 YLEKFNCPM 677 (704)
Q Consensus 669 ~L~i~~C~~ 677 (704)
.|.+.++|-
T Consensus 403 ~l~L~~NPl 411 (490)
T KOG1259|consen 403 TLRLTGNPL 411 (490)
T ss_pred HHhhcCCCc
Confidence 888888763
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=3e-08 Score=109.09 Aligned_cols=182 Identities=30% Similarity=0.353 Sum_probs=140.9
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP 456 (704)
+..++.+..|++.++.++ .+|.....+. +|+.|++++| .+..+|..+..+++|+.|++++| .+..+|
T Consensus 112 ~~~~~~l~~L~l~~n~i~----------~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT----------DIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred hhcccceeEEecCCcccc----------cCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhh
Confidence 445578999999999765 5566666774 9999999997 57888877999999999999997 677888
Q ss_pred ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 457 KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 457 ~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
...+.+++|+.|++++|. ...+|..+..+..|++| .+++|.....+..+. .+.++..|.+.+|++...
T Consensus 180 ~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l------~~~~N~~~~~~~~~~-~~~~l~~l~l~~n~~~~~---- 247 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEEL------DLSNNSIIELLSSLS-NLKNLSGLELSNNKLEDL---- 247 (394)
T ss_pred hhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhh------hhcCCcceecchhhh-hcccccccccCCceeeec----
Confidence 877789999999999998 45778766677779998 477776666677777 888888888888875431
Q ss_pred HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc
Q 041391 537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN 611 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~ 611 (704)
+..+..++.|+.|+++.|.+.. ++. +... .+|+.|+++++.+...+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~--------------------------i~~-~~~~-~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS--------------------------ISS-LGSL-TNLRELDLSGNSLSNALP 294 (394)
T ss_pred cchhccccccceeccccccccc--------------------------ccc-cccc-CccCEEeccCccccccch
Confidence 3567888889999999888543 222 3344 589999999887765543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=3.1e-08 Score=99.11 Aligned_cols=229 Identities=17% Similarity=0.085 Sum_probs=135.1
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i 459 (704)
-+..|.+|.+++..-... ..++....+|-.+.-+.+|..+.+++|. ...+-+-...-+.|+++..++. -+...|. +
T Consensus 180 f~~~l~~l~vs~~~~p~~-~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s-~~~~~~~-l 255 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPID-RSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNT-TIQDVPS-L 255 (490)
T ss_pred hhhheeEEEecCCCCCCc-cccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeecc-ccccccc-c
Confidence 345666776665421100 0011122344455566778888888873 3333332223367888888763 2222221 1
Q ss_pred cccCCCcEEEcc-CcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 460 DSLKKLTYLDIS-ECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 460 ~~L~~L~~L~Ls-~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
--+..+.-+.-. .....+.+-..+-..+.|++| ++++|.+...-..+. -++.++.|+++.|.+... .
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel------DLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v-----~ 323 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTEL------DLSGNLITQIDESVK-LAPKLRRLILSQNRIRTV-----Q 323 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhc------cccccchhhhhhhhh-hccceeEEeccccceeee-----h
Confidence 111112111111 011112222233445677788 688888766656666 778899999999887532 3
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-N 617 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~ 617 (704)
++..+++|+.|+|++|.+.. +..+-..+ .+++.|.|++|.+..+ +.+..+ +
T Consensus 324 nLa~L~~L~~LDLS~N~Ls~--------------------------~~Gwh~KL-GNIKtL~La~N~iE~L-SGL~KLYS 375 (490)
T KOG1259|consen 324 NLAELPQLQLLDLSGNLLAE--------------------------CVGWHLKL-GNIKTLKLAQNKIETL-SGLRKLYS 375 (490)
T ss_pred hhhhcccceEeecccchhHh--------------------------hhhhHhhh-cCEeeeehhhhhHhhh-hhhHhhhh
Confidence 47888899999999887432 22222334 4889999999888766 355566 9
Q ss_pred eeEEEEEcCCCCCcCCC-ccCCCCCcCEEecCCCcc
Q 041391 618 LRKLYIRGGQLRSLQGD-THKKYSTVKVLRLRYLNE 652 (704)
Q Consensus 618 L~~L~Ls~n~l~~lp~~-~~~~f~~L~~L~L~~l~~ 652 (704)
|..|++++|++..+... ....+|.|+.|.|.+++.
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99999999998766532 345688899888887663
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=3e-07 Score=106.59 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=56.8
Q ss_pred CcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCCCC
Q 041391 441 LRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKEL 519 (704)
Q Consensus 441 L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L 519 (704)
++.|+|++|...+.+|..++.|++|+.|+|++|.+.+.+|..++.+++|+.| ++++|.+.+.+|+ +. .|++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L------dLs~N~lsg~iP~~l~-~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL------DLSYNSFNGSIPESLG-QLTSL 492 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE------ECCCCCCCCCCchHHh-cCCCC
Confidence 4555555555555555555555555555555555555555555555555555 3555555544433 33 55556
Q ss_pred cEEEEEeeCCCCchhhHHHHhcc-CCCccEEEEEecCCC
Q 041391 520 RKLSIYVNNNAIPIEKLSESLEK-FKNLLKLKIAWGAGY 557 (704)
Q Consensus 520 ~~L~L~~n~~~~~~~~l~~~L~~-l~~L~~L~Ls~n~l~ 557 (704)
+.|++++|.+.+.++ ..+.. ..++..+++.+|...
T Consensus 493 ~~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 493 RILNLNGNSLSGRVP---AALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CEEECcCCcccccCC---hHHhhccccCceEEecCCccc
Confidence 666666555554443 22322 234455566555543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=4.3e-08 Score=100.44 Aligned_cols=255 Identities=22% Similarity=0.172 Sum_probs=134.8
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC----CCchh-------hhccccCcEE
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR----EIPSS-------IANLSNLRVL 444 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~----~lP~~-------l~~L~~L~~L 444 (704)
..+..+..+..|+|++|.+... ....+-+.+.+.++|+..+++.- ..+ ++|+. +-..++|++|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~E-----Aa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTE-----AARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred HHhcccCceEEEeccCCchhHH-----HHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3456778888889988865310 01234455677778888888873 332 33433 2344678888
Q ss_pred eeecccCCCcCCcc----ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCc
Q 041391 445 DLRCCYYLTKLPKG----LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELR 520 (704)
Q Consensus 445 dLs~c~~l~~lP~~----i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~ 520 (704)
|||.|-.-..-+.. +..+..|++|.|.+|.+...--..++. .|.+|. .+ .... .-++|+
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--------~~------kk~~-~~~~Lr 160 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--------VN------KKAA-SKPKLR 160 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------HH------hccC-CCcceE
Confidence 88877544333333 345667777777777532111011111 122220 00 0111 345677
Q ss_pred EEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEE
Q 041391 521 KLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKL 599 (704)
Q Consensus 521 ~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L 599 (704)
++....|++... ...+...+...+.|+.+.+..|.+...- .. .+...+..+ ++|+.|
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG---------~~------------al~eal~~~-~~LevL 218 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---------VT------------ALAEALEHC-PHLEVL 218 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCch---------hH------------HHHHHHHhC-Ccceee
Confidence 777777765422 2334455666677777777777653210 00 011223334 377777
Q ss_pred EEEcCCCCC-----CcccCCCC-CeeEEEEEcCCCCCc-----CCCccCCCCCcCEEecCCCccccccccccc---CcCC
Q 041391 600 DLHCFPLES-----LPNWLSGL-NLRKLYIRGGQLRSL-----QGDTHKKYSTVKVLRLRYLNELNVNWRELQ---ALFP 665 (704)
Q Consensus 600 ~Ls~~~l~~-----lP~~l~~l-~L~~L~Ls~n~l~~l-----p~~~~~~f~~L~~L~L~~l~~L~l~~~~l~---~~~p 665 (704)
+|..|.++. +...+... +|+.|++++|.+..- -......+|+|++|.|.++..-.-....+. ...|
T Consensus 219 dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 219 DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 777766532 11112222 577788887776321 122234477788887777543220000000 3477
Q ss_pred CccEEeeecC
Q 041391 666 DLEYLEKFNC 675 (704)
Q Consensus 666 ~L~~L~i~~C 675 (704)
.|+.|.+.+|
T Consensus 299 dL~kLnLngN 308 (382)
T KOG1909|consen 299 DLEKLNLNGN 308 (382)
T ss_pred hhHHhcCCcc
Confidence 8888888887
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=7e-08 Score=101.42 Aligned_cols=211 Identities=20% Similarity=0.147 Sum_probs=99.2
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC---chhhhccccCcEEeeecccCCCcCC
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI---PSSIANLSNLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l---P~~l~~L~~L~~LdLs~c~~l~~lP 456 (704)
++++||...|.++.+.... .+ .....|++++.|||++|- +... -.-...|++|+.|+|+.|....-..
T Consensus 119 n~kkL~~IsLdn~~V~~~~------~~--~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAG------IE--EYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred hHHhhhheeecCccccccc------hh--hhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 4555666666655432110 00 234456666666666652 2211 1223456666666666653221111
Q ss_pred cc-ccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCcc-chhhHHhCCCCCcEEEEEeeCCCCch
Q 041391 457 KG-LDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKIC-TLEDLGNSLKELRKLSIYVNNNAIPI 533 (704)
Q Consensus 457 ~~-i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~-~~~~l~~~L~~L~~L~L~~n~~~~~~ 533 (704)
.. -..+.+|+.|.++.|.+...-. ..+..+++|+.|+ +..|.... ...... -+..|+.|+|++|.+....
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~------L~~N~~~~~~~~~~~-i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLY------LEANEIILIKATSTK-ILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhh------hhcccccceecchhh-hhhHHhhccccCCcccccc
Confidence 11 1245566666666665543211 1233456666663 55553111 111222 3456667777766654211
Q ss_pred hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCccc-
Q 041391 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW- 612 (704)
Q Consensus 534 ~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~- 612 (704)
....++.++.|+.|.++.|.+.+...+.... + .-...+ ++|+.|++..|++..+++.
T Consensus 263 --~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s------------------~-~kt~~f-~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 263 --QGYKVGTLPGLNQLNLSSTGIASIAEPDVES------------------L-DKTHTF-PKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred --cccccccccchhhhhccccCcchhcCCCccc------------------h-hhhccc-ccceeeecccCccccccccc
Confidence 1134556667777777666654321111000 0 001123 3677777777776555421
Q ss_pred -CCCC-CeeEEEEEcCCC
Q 041391 613 -LSGL-NLRKLYIRGGQL 628 (704)
Q Consensus 613 -l~~l-~L~~L~Ls~n~l 628 (704)
+..+ +|+.|.+..|.+
T Consensus 321 ~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhccchhhhhhcccccc
Confidence 2222 666676666665
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=2.7e-07 Score=94.67 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=49.4
Q ss_pred chhhcCCCCCccEEEcCCCCCcccchhhhccchhh-------HhccCCcccceeeeeccCCCCCCc----hhhhccccCc
Q 041391 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL-------KELKNMSALRLLSLQGVYGIREIP----SSIANLSNLR 442 (704)
Q Consensus 374 ~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp-------~~l~~L~~Lr~L~Ls~n~~l~~lP----~~l~~L~~L~ 442 (704)
....+.+.++||.-++++-. ++. ...++| +.+..+++|++|+||.|-.-..-+ .-+..+..|+
T Consensus 50 i~~~L~~~~~L~~v~~sd~f-tGR-----~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~ 123 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDMF-TGR-----LKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLE 123 (382)
T ss_pred HHHHHhhcccceeeehHhhh-cCC-----cHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHH
Confidence 34567888899999988652 211 112333 445677899999999985433333 3356789999
Q ss_pred EEeeecccCCC
Q 041391 443 VLDLRCCYYLT 453 (704)
Q Consensus 443 ~LdLs~c~~l~ 453 (704)
+|.|.+| .++
T Consensus 124 eL~L~N~-Glg 133 (382)
T KOG1909|consen 124 ELYLNNC-GLG 133 (382)
T ss_pred HHhhhcC-CCC
Confidence 9999998 444
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.2e-08 Score=99.09 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=106.1
Q ss_pred CcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 465 LTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 465 L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
|++|||++..++..-- .-++.+.+|+.| .+.++++...+ ..+. .-.+|+.|+++.+.--.. ..+.-.+.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~l------SlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~-n~~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNL------SLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTE-NALQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhc------cccccccCcHHHHHHh-ccccceeeccccccccch-hHHHHHHHh
Confidence 5555555544322111 113455566666 36666655544 3555 667888888887753211 222345788
Q ss_pred CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC----CCCcccCCCC-C
Q 041391 543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL----ESLPNWLSGL-N 617 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l----~~lP~~l~~l-~ 617 (704)
++.|..|+|+||.+.... +...+.+..++|+.|+|+|+.- ..+....... +
T Consensus 259 cs~L~~LNlsWc~l~~~~------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEK------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred hhhHhhcCchHhhccchh------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 899999999999854321 1111223335889999998752 1121111222 9
Q ss_pred eeEEEEEcCCCCCc-CCCccCCCCCcCEEecCCCccccccccccc-CcCCCccEEeeecCC
Q 041391 618 LRKLYIRGGQLRSL-QGDTHKKYSTVKVLRLRYLNELNVNWRELQ-ALFPDLEYLEKFNCP 676 (704)
Q Consensus 618 L~~L~Ls~n~l~~l-p~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-~~~p~L~~L~i~~C~ 676 (704)
|.+|+|++|..-.- -...+..|+.|++|.++.|-.+. ....+. ...|+|.+|++.+|-
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEecccc
Confidence 99999999865211 11223458899999999987664 222222 678999999999884
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.15 E-value=9.3e-07 Score=84.85 Aligned_cols=111 Identities=27% Similarity=0.324 Sum_probs=34.7
Q ss_pred hhccccCcEEeeecccCCCcCCcccc-ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHH
Q 041391 435 IANLSNLRVLDLRCCYYLTKLPKGLD-SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG 513 (704)
Q Consensus 435 l~~L~~L~~LdLs~c~~l~~lP~~i~-~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~ 513 (704)
+.+..+++.|+|++| .+..+ +.++ .+.+|+.|++++|.+. .++ ++..++.|++| .+++|.+....+.+.
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L------~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTL------DLSNNRISSISEGLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EE------E--SS---S-CHHHH
T ss_pred ccccccccccccccc-ccccc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhc------ccCCCCCCccccchH
Confidence 344445566666665 23333 2343 3556666666666533 332 35566666666 466666655433443
Q ss_pred hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391 514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
..+++|+.|++++|++... .++ ..+..+++|+.|+|.+|++.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l-~~l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDL-NEL-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HH-TT--EEE-TTS---SC-CCC-GGGGG-TT--EEE-TT-GGG
T ss_pred HhCCcCCEEECcCCcCCCh-HHh-HHHHcCCCcceeeccCCccc
Confidence 2567888888888876532 222 46788999999999999853
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=3.8e-07 Score=100.94 Aligned_cols=177 Identities=29% Similarity=0.334 Sum_probs=93.7
Q ss_pred ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~ 490 (704)
+..+.+|.+|++.+| .+..+...+..+.+|++|+|++| .++.+ ..+..++.|+.|++.+|.+. .+ .++..+++|+
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccCcch-hc-cCCccchhhh
Confidence 566667777777775 34444444666777777777765 44444 24556666777777777632 22 2344566666
Q ss_pred eecccccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391 491 VLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH 569 (704)
Q Consensus 491 ~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 569 (704)
.+ ++++|.+...-.. +. .+.+|+.+.+.+|.+... ..+..+..+..+++..|.+...
T Consensus 166 ~l------~l~~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~~i-----~~~~~~~~l~~~~l~~n~i~~~---------- 223 (414)
T KOG0531|consen 166 LL------DLSYNRIVDIENDELS-ELISLEELDLGGNSIREI-----EGLDLLKKLVLLSLLDNKISKL---------- 223 (414)
T ss_pred cc------cCCcchhhhhhhhhhh-hccchHHHhccCCchhcc-----cchHHHHHHHHhhcccccceec----------
Confidence 66 4666664433331 34 666777777777654321 1222233333334444443210
Q ss_pred chhhHhhHhhhcCCCCCCcccccc-cceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCc
Q 041391 570 NKKQEDEAETQGKGGLDGTFGQKD-RLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSL 631 (704)
Q Consensus 570 ~~~l~~~~~~~~~~~l~~~~~~lp-~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~l 631 (704)
..++ ..+ .+|+.++++++.+..++..+..+ ++..|++..|++..+
T Consensus 224 -------------~~l~----~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 224 -------------EGLN----ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred -------------cCcc----cchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 0010 110 02667777777666554334444 666777776666433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=3.8e-06 Score=66.01 Aligned_cols=58 Identities=36% Similarity=0.514 Sum_probs=29.2
Q ss_pred ccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcc
Q 041391 416 ALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY 474 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~ 474 (704)
+|++|++++| .+..+| ..|.++++|++|++++|.....-|..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555554 344444 344555555555555543322223345555556666555554
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=6.8e-05 Score=80.76 Aligned_cols=65 Identities=23% Similarity=0.438 Sum_probs=37.6
Q ss_pred ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc
Q 041391 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK 481 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~ 481 (704)
+..+.++++|++++| .+..+|. + ..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 344566666666666 4566662 1 23566677766666666665442 4667777776644444554
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=1.8e-05 Score=62.12 Aligned_cols=59 Identities=36% Similarity=0.512 Sum_probs=45.1
Q ss_pred ccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPND 504 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~ 504 (704)
++|++|++++| .+..+| ..+..+++|++|++++|.+....|..+..+++|++| ++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L------~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL------DLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE------EETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE------eCcCCc
Confidence 46888999987 555666 457889999999999888765555567888888888 477765
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=2e-05 Score=84.82 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=58.7
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..+.+++.|++++|.++ .+| . -..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~----------sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE----------SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc----------ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 344688999999999665 344 1 123689999999888888887663 6899999999877777875
Q ss_pred cccccCCCcEEEccCccc--ccccCcc
Q 041391 458 GLDSLKKLTYLDISECYL--IEYMPKE 482 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~--~~~lP~~ 482 (704)
. |+.|++.++.. .+.+|.+
T Consensus 113 s------Le~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 113 S------VRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred c------cceEEeCCCCCcccccCcch
Confidence 4 55666655432 3445553
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=5.1e-06 Score=83.58 Aligned_cols=157 Identities=24% Similarity=0.211 Sum_probs=91.8
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc--ccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK--GLD 460 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~--~i~ 460 (704)
.|++|||++..++. ..+-..+..+..|+.|.|.++..-..+-..+.+-.+|+.|+|+.|+...+..- -+.
T Consensus 186 Rlq~lDLS~s~it~--------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV--------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhHHhhcchhheeH--------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH
Confidence 57788888876642 24445567788888888888755555555677778888888888866554322 245
Q ss_pred ccCCCcEEEccCcccccccCcc-CCC-CCCcceecccccccCCCCC---CccchhhHHhCCCCCcEEEEEeeCCCCchhh
Q 041391 461 SLKKLTYLDISECYLIEYMPKE-LSS-LSELQVLKGFLVTDAKPND---KICTLEDLGNSLKELRKLSIYVNNNAIPIEK 535 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~-i~~-L~~L~~L~~~~~~~ls~n~---l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~ 535 (704)
+++.|..|++++|......-.. +.+ -.+|..| +++++. ....+..+...+++|..|+++.|.... +.
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L------NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~--~~ 329 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL------NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK--ND 329 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhh------hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC--ch
Confidence 6778888888888654322110 111 1134444 233321 111233444466677777776664322 24
Q ss_pred HHHHhccCCCccEEEEEecC
Q 041391 536 LSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 536 l~~~L~~l~~L~~L~Ls~n~ 555 (704)
....|.+++.|++|.++.|.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHHHHhcchheeeehhhhc
Confidence 44556666667777666665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=5.8e-06 Score=91.56 Aligned_cols=152 Identities=28% Similarity=0.330 Sum_probs=98.1
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..+++|..|++.+|.+.. +...+..+++|++|+|++| .++.+.. +..+..|+.|++++| .+..+ .
T Consensus 91 l~~~~~l~~l~l~~n~i~~----------i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N-~i~~~-~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK----------IENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGN-LISDI-S 156 (414)
T ss_pred cccccceeeeeccccchhh----------cccchhhhhcchheecccc-ccccccc-hhhccchhhheeccC-cchhc-c
Confidence 5678888999999997753 2222677889999999997 5777765 778888999999987 44444 3
Q ss_pred cccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
.+..+++|+.+++++|.+...-+ . ...+.+|+.+ .+.+|.+. .+..+. .+..+..+++..|.+...
T Consensus 157 ~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l------~l~~n~i~-~i~~~~-~~~~l~~~~l~~n~i~~~---- 223 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEEL------DLGGNSIR-EIEGLD-LLKKLVLLSLLDNKISKL---- 223 (414)
T ss_pred CCccchhhhcccCCcchhhhhhh-hhhhhccchHHH------hccCCchh-cccchH-HHHHHHHhhcccccceec----
Confidence 55668889999999987543322 1 3567777777 36666543 233333 344555556666655321
Q ss_pred HHHhccCC--CccEEEEEecCCC
Q 041391 537 SESLEKFK--NLLKLKIAWGAGY 557 (704)
Q Consensus 537 ~~~L~~l~--~L~~L~Ls~n~l~ 557 (704)
..+..+. +|+.+++.+|++.
T Consensus 224 -~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 224 -EGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred -cCcccchhHHHHHHhcccCccc
Confidence 1122222 2677777777743
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=3e-06 Score=94.21 Aligned_cols=165 Identities=24% Similarity=0.218 Sum_probs=109.2
Q ss_pred cCCCCCccEEEcCCCCCcccchhhh---ccchh-------------hHhccC------CcccceeeeeccCCCCCCchhh
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEV---QGSKF-------------LKELKN------MSALRLLSLQGVYGIREIPSSI 435 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~---~~~~l-------------p~~l~~------L~~Lr~L~Ls~n~~l~~lP~~l 435 (704)
+..++.||+|.|.++.+...+-+.- ....+ -...+. -..|...+.++| .+..+-.++
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~SL 183 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDESL 183 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHHH
Confidence 5678899999999997753221100 00000 000111 123556666765 466677778
Q ss_pred hccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhhHHh
Q 041391 436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLEDLGN 514 (704)
Q Consensus 436 ~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~ 514 (704)
.-++.|+.|||++|+. ..+ ..+..|++|++|||++|.+ ..+|.- ...+ .|+.| ++++|.+. .+..+.
T Consensus 184 qll~ale~LnLshNk~-~~v-~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc-~L~~L------~lrnN~l~-tL~gie- 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKF-TKV-DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGC-KLQLL------NLRNNALT-TLRGIE- 251 (1096)
T ss_pred HHHHHhhhhccchhhh-hhh-HHHHhcccccccccccchh-ccccccchhhh-hheee------eecccHHH-hhhhHH-
Confidence 8889999999999854 444 3788899999999999984 456642 2223 38888 57877754 455677
Q ss_pred CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391 515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
+|.+|+.|+++.|-+.+.-+ ...+..+..|+.|.|.+|++.
T Consensus 252 ~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCccc
Confidence 88899999999987654322 134666778889999988864
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=2.7e-05 Score=78.48 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=18.5
Q ss_pred cccCcEEeeecccCCC--cCCccccccCCCcEEEccCcc
Q 041391 438 LSNLRVLDLRCCYYLT--KLPKGLDSLKKLTYLDISECY 474 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~--~lP~~i~~L~~L~~L~Ls~n~ 474 (704)
.++++.|||.+|.... ++-.-+.+|+.|++|+++.|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 4556666666653221 222223455566666666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0001 Score=74.34 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=95.4
Q ss_pred chhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC
Q 041391 508 TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG 587 (704)
Q Consensus 508 ~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 587 (704)
....++...+.++.|++.+|.++ ...++...+.++++|+.|+|+.|.+...+ +.+|.
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I----------------------~~lp~ 118 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDI----------------------KSLPL 118 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCcc----------------------ccCcc
Confidence 34455556688999999999887 45677788999999999999999865422 22331
Q ss_pred cccccccceeEEEEEcCCC--CCCcccCCCC-CeeEEEEEcCCCCCc---CCCccCCCCCcCEEecCCCcccc-cccccc
Q 041391 588 TFGQKDRLLEKLDLHCFPL--ESLPNWLSGL-NLRKLYIRGGQLRSL---QGDTHKKYSTVKVLRLRYLNELN-VNWREL 660 (704)
Q Consensus 588 ~~~~lp~~L~~L~Ls~~~l--~~lP~~l~~l-~L~~L~Ls~n~l~~l---p~~~~~~f~~L~~L~L~~l~~L~-l~~~~l 660 (704)
+..+|+.|.|.|..+ ...-+.+..+ .++.|+++.|.+..+ ......+-+.+++|++..|.... .+.+.+
T Consensus 119 ----p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 119 ----PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred ----cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence 125899999987665 2222333334 778888888865332 22333445577777777776553 233444
Q ss_pred cCcCCCccEEeeecCC
Q 041391 661 QALFPDLEYLEKFNCP 676 (704)
Q Consensus 661 ~~~~p~L~~L~i~~C~ 676 (704)
...||++..+.+..||
T Consensus 195 ~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGP 210 (418)
T ss_pred HhhcccchheeeecCc
Confidence 5789999988888885
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.29 E-value=0.00011 Score=73.39 Aligned_cols=249 Identities=18% Similarity=0.141 Sum_probs=131.4
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCC----Cch-------hhhccccCcEEeee
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE----IPS-------SIANLSNLRVLDLR 447 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~----lP~-------~l~~L~~L~~LdLs 447 (704)
..|..+..++|++|.+... ....+...+.+-.+|+..+++.- .++. +|+ .+-++++|+..+||
T Consensus 27 ~~~d~~~evdLSGNtigtE-----A~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTE-----AMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HhhcceeEEeccCCcccHH-----HHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 4477888899999966421 12345566777888999888873 3332 232 24567889999999
Q ss_pred cccCCCcCCccc----cccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEE
Q 041391 448 CCYYLTKLPKGL----DSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKL 522 (704)
Q Consensus 448 ~c~~l~~lP~~i----~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L 522 (704)
.|.+-...|..+ .+-+.|.||.+++|.+ +.+.. .|++ .|++|- .|. ... .-+.|+..
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigk--al~~la--------~nK------Kaa-~kp~Le~v 162 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGK--ALFHLA--------YNK------KAA-DKPKLEVV 162 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHH--HHHHHH--------HHh------hhc-cCCCceEE
Confidence 887666666543 4557888999888863 22221 1221 233330 111 112 34566666
Q ss_pred EEEeeCCCC-chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEE
Q 041391 523 SIYVNNNAI-PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDL 601 (704)
Q Consensus 523 ~L~~n~~~~-~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~L 601 (704)
.+..|++.. +.......+.....|+.+.+..|.+... ....+.. ..+... .+|+.|+|
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe---------gv~~L~~-----------~gl~y~-~~LevLDl 221 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPE---------GVTMLAF-----------LGLFYS-HSLEVLDL 221 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc---------hhHHHHH-----------HHHHHh-Ccceeeec
Confidence 666666532 2222223344445677777776664321 0000000 001112 46777777
Q ss_pred EcCCCCC---------CcccCCCCCeeEEEEEcCCCCCcC------CCccCCCCCcCEEecCCCcc-----ccccccccc
Q 041391 602 HCFPLES---------LPNWLSGLNLRKLYIRGGQLRSLQ------GDTHKKYSTVKVLRLRYLNE-----LNVNWRELQ 661 (704)
Q Consensus 602 s~~~l~~---------lP~~l~~l~L~~L~Ls~n~l~~lp------~~~~~~f~~L~~L~L~~l~~-----L~l~~~~l~ 661 (704)
..|.++. +|.|- .|+.|.+..|-++.-. ...-..+|+|..|.+.+... ++++.+.+.
T Consensus 222 qDNtft~~gS~~La~al~~W~---~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e 298 (388)
T COG5238 222 QDNTFTLEGSRYLADALCEWN---LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE 298 (388)
T ss_pred cccchhhhhHHHHHHHhcccc---hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence 7665432 23332 4577777777652211 11122356666666655321 112233333
Q ss_pred -CcCCCccEEeeecC
Q 041391 662 -ALFPDLEYLEKFNC 675 (704)
Q Consensus 662 -~~~p~L~~L~i~~C 675 (704)
+.+|-|..|.+.++
T Consensus 299 ~~~~p~L~~le~ngN 313 (388)
T COG5238 299 QDAVPLLVDLERNGN 313 (388)
T ss_pred hcccHHHHHHHHccC
Confidence 66777777777665
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.00023 Score=82.85 Aligned_cols=133 Identities=27% Similarity=0.235 Sum_probs=68.9
Q ss_pred cccceeeeeccCCCC-CCchhhhc-cccCcEEeeecccCC-CcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391 415 SALRLLSLQGVYGIR-EIPSSIAN-LSNLRVLDLRCCYYL-TKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491 (704)
Q Consensus 415 ~~Lr~L~Ls~n~~l~-~lP~~l~~-L~~L~~LdLs~c~~l-~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~ 491 (704)
.+|++|+++|..... ..|..++. ||+|+.|.+++-... ..+-.-..++++|..||++++.+. .+ .++++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 456666666643321 22233332 566666666652111 111222345666777777766533 22 45667777777
Q ss_pred ecccccccCCCCCCc--cchhhHHhCCCCCcEEEEEeeCCCCc---hhhHHHHhccCCCccEEEEEecCC
Q 041391 492 LKGFLVTDAKPNDKI--CTLEDLGNSLKELRKLSIYVNNNAIP---IEKLSESLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 492 L~~~~~~~ls~n~l~--~~~~~l~~~L~~L~~L~L~~n~~~~~---~~~l~~~L~~l~~L~~L~Ls~n~l 556 (704)
|. +.+-.+. ..+.+++ +|++|+.||+|....... +....+.-..+++|+.|+.++..+
T Consensus 200 L~------mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LS------MRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred Hh------ccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 63 2222222 2345667 777777777776554322 122333444567777777775553
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.28 E-value=5.7e-06 Score=92.01 Aligned_cols=176 Identities=24% Similarity=0.218 Sum_probs=98.9
Q ss_pred chhhhccccCcEEeeecccCCCcCCcccccc-CCCcEEEccCccc----------ccccCccCCCCCCcceecccccccC
Q 041391 432 PSSIANLSNLRVLDLRCCYYLTKLPKGLDSL-KKLTYLDISECYL----------IEYMPKELSSLSELQVLKGFLVTDA 500 (704)
Q Consensus 432 P~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L-~~L~~L~Ls~n~~----------~~~lP~~i~~L~~L~~L~~~~~~~l 500 (704)
|-+|..+..|++|.|++|.... . .++..+ ..|++|.-.+ .. .+.+..++ ....|.+. +.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a------~f 171 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATA------SF 171 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhh------hc
Confidence 5567778888888888884332 1 222222 1344442211 10 11111110 01123333 46
Q ss_pred CCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhh
Q 041391 501 KPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQ 580 (704)
Q Consensus 501 s~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~ 580 (704)
++|.+...=..+. -++.|+.|+++.|+++.. +.+..+++|++|+|++|.+..
T Consensus 172 syN~L~~mD~SLq-ll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~---------------------- 223 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQ-LLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRH---------------------- 223 (1096)
T ss_pred chhhHHhHHHHHH-HHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhcc----------------------
Confidence 6666555445565 678888888888876521 467888888888888887432
Q ss_pred cCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCC-ccCCCCCcCEEecCCCc
Q 041391 581 GKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGD-THKKYSTVKVLRLRYLN 651 (704)
Q Consensus 581 ~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~-~~~~f~~L~~L~L~~l~ 651 (704)
+|. +......|+.|.|++|.++.+ ..+.++ +|+.|++++|-+...... ....+..|+.|+|.+++
T Consensus 224 ----vp~-l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 224 ----VPQ-LSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ----ccc-cchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 221 111123688888888877666 345555 888888888876333221 11224456666666655
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.21 E-value=0.00047 Score=50.09 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=15.9
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC 449 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c 449 (704)
+|++|++++| .+..+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4455555554 34445544555555555555554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.20 E-value=0.00036 Score=50.70 Aligned_cols=34 Identities=38% Similarity=0.474 Sum_probs=15.1
Q ss_pred cCcEEeeecccCCCcCCccccccCCCcEEEccCcc
Q 041391 440 NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECY 474 (704)
Q Consensus 440 ~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~ 474 (704)
+|++|++++| .+..+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC
Confidence 3444555544 333444444455555555555444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00012 Score=85.20 Aligned_cols=86 Identities=29% Similarity=0.346 Sum_probs=46.4
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC--
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-- 455 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-- 455 (704)
-..+|.|+.|.+.+-.+. ..++-.-..++++|+.||++++ .++.+ ..++.|++||+|.+++= ....-
T Consensus 144 g~~LPsL~sL~i~~~~~~--------~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~ 212 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFD--------NDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQD 212 (699)
T ss_pred hhhCcccceEEecCceec--------chhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhh
Confidence 344566666666655332 1233444556666666666663 45555 33666666666666642 11111
Q ss_pred CccccccCCCcEEEccCcc
Q 041391 456 PKGLDSLKKLTYLDISECY 474 (704)
Q Consensus 456 P~~i~~L~~L~~L~Ls~n~ 474 (704)
-..+.+|++|++||+|...
T Consensus 213 l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 213 LIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHHhcccCCCeeeccccc
Confidence 1234566666666666543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.99 E-value=0.00013 Score=65.61 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=68.2
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc-cccCcEEeeecccCCCcCCcccccc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN-LSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~-L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
+-.++|++|.+-++ ...+..+....+|...+|++| ..+.+|..|.. .+.+.+|+|++| .+..+|..+..+
T Consensus 29 ~h~ldLssc~lm~i-------~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYI-------ADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAM 99 (177)
T ss_pred hhhcccccchhhHH-------HHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhh
Confidence 44567777755422 234555667777888888887 56777776654 347888888875 667788888888
Q ss_pred CCCcEEEccCcccccccCccCCCCCCccee
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVL 492 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L 492 (704)
+.|+.|+++.|.+. ..|..|..|.+|-.|
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 88888888888743 556666666666666
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.82 E-value=0.00013 Score=77.05 Aligned_cols=260 Identities=21% Similarity=0.217 Sum_probs=127.8
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch--hhhccccCcEEeeecccCCCc-
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS--SIANLSNLRVLDLRCCYYLTK- 454 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~--~l~~L~~L~~LdLs~c~~l~~- 454 (704)
-.+++++..|.+.++... ....+...-..+..|++|+|..|..++...- -...+++|.+|++++|..+..
T Consensus 160 ~~~CpnIehL~l~gc~~i-------Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~ 232 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKI-------TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN 232 (483)
T ss_pred hhhCCchhhhhhhcceec-------cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC
Confidence 356677777777776411 1122333334677777887777655543321 123567778888887765443
Q ss_pred -CCccccccCCCcEEEccCcccccccCcc-C----CCCCCcceecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEe
Q 041391 455 -LPKGLDSLKKLTYLDISECYLIEYMPKE-L----SSLSELQVLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYV 526 (704)
Q Consensus 455 -lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i----~~L~~L~~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~ 526 (704)
+-.-..+..+|+.+.+.||.-. +.. + +....+-.+ ++..+..... +-.+...+..|+.|+.++
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~l------nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~ 303 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKL------NLQHCNQLTDEDLWLIACGCHALQVLCYSS 303 (483)
T ss_pred cchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhcc------chhhhccccchHHHHHhhhhhHhhhhcccC
Confidence 1112234445566655555311 110 1 111112222 1222221111 123333567778888777
Q ss_pred eCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391 527 NNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606 (704)
Q Consensus 527 n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l 606 (704)
+...+.. .+.+--.+..+|+.|.++.|...+.. .+ ..+......|+.|++..+..
T Consensus 304 ~t~~~d~-~l~aLg~~~~~L~~l~l~~c~~fsd~-----------------------~f-t~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 304 CTDITDE-VLWALGQHCHNLQVLELSGCQQFSDR-----------------------GF-TMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred CCCCchH-HHHHHhcCCCceEEEeccccchhhhh-----------------------hh-hhhhcCChhhhhhcccccce
Confidence 6643221 11122345678888888777632110 00 00111113677777776553
Q ss_pred CCCcccCCCC-----CeeEEEEEcCCCCCcC-----CCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCC
Q 041391 607 ESLPNWLSGL-----NLRKLYIRGGQLRSLQ-----GDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCP 676 (704)
Q Consensus 607 ~~lP~~l~~l-----~L~~L~Ls~n~l~~lp-----~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~ 676 (704)
..-- .+..+ .|+.|.|++|....-. .....+...|..|.|.+|+.+.-.--......++|+.+++.+|.
T Consensus 359 ~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 359 ITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2211 12221 7777777777652221 12233456677778888776641111111456788888888775
Q ss_pred CCC
Q 041391 677 MIS 679 (704)
Q Consensus 677 ~L~ 679 (704)
..+
T Consensus 438 ~vt 440 (483)
T KOG4341|consen 438 DVT 440 (483)
T ss_pred hhh
Confidence 543
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.29 E-value=0.00029 Score=74.36 Aligned_cols=259 Identities=22% Similarity=0.190 Sum_probs=147.4
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhh-hccccCcEEeeecccCCCcCC--cc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSI-ANLSNLRVLDLRCCYYLTKLP--KG 458 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l-~~L~~L~~LdLs~c~~l~~lP--~~ 458 (704)
.|+.|.+.++.-. ....+-....++++++.|.+.+|..++.-. .++ ..+++|++|+|..|..+...- .-
T Consensus 139 ~lk~LSlrG~r~v-------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAV-------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccC-------CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 4677888877422 112333445688999999999997655321 112 357899999999987665321 12
Q ss_pred ccccCCCcEEEccCcccccc--cCccCCCCCCcceecccccccCCCCCCcc--chhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391 459 LDSLKKLTYLDISECYLIEY--MPKELSSLSELQVLKGFLVTDAKPNDKIC--TLEDLGNSLKELRKLSIYVNNNAIPIE 534 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~--lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~~~~l~~~L~~L~~L~L~~n~~~~~~~ 534 (704)
...+++|.+|++++|.-... +-.-......|+.+. ..++.-.. .+..+......+.++++..|..... .
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~------~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD-~ 284 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLS------LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD-E 284 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhh------hcccccccHHHHHHHhccChHhhccchhhhccccc-h
Confidence 34578999999999964322 111123444455552 22221110 1112222334455666666644322 2
Q ss_pred hHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC-CCCc-cc
Q 041391 535 KLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL-ESLP-NW 612 (704)
Q Consensus 535 ~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l-~~lP-~~ 612 (704)
.+...-..+..|+.|..+++....+. .+ ..+..-..+|+.|-+++|+- +..- ..
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~-----------~l-------------~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDE-----------VL-------------WALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchH-----------HH-------------HHHhcCCCceEEEeccccchhhhhhhhh
Confidence 22233445678888888877632110 00 01111124899999998762 2211 11
Q ss_pred CCCC--CeeEEEEEcCCCCCcC--CCccCCCCCcCEEecCCCccccccc--c---cccCcCCCccEEeeecCCCCCC
Q 041391 613 LSGL--NLRKLYIRGGQLRSLQ--GDTHKKYSTVKVLRLRYLNELNVNW--R---ELQALFPDLEYLEKFNCPMISF 680 (704)
Q Consensus 613 l~~l--~L~~L~Ls~n~l~~lp--~~~~~~f~~L~~L~L~~l~~L~l~~--~---~l~~~~p~L~~L~i~~C~~L~~ 680 (704)
+..- .|+.|++..|...... .......+.|+.|.|++|..+. .. . .....+..|..|.+.+||.+++
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it-D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT-DEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh-hhhhhhhhhccccccccceeeecCCCCchH
Confidence 1111 8999999998763221 1234568999999999887665 22 1 1114567899999999987554
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.10 E-value=0.002 Score=64.52 Aligned_cols=195 Identities=18% Similarity=0.153 Sum_probs=97.8
Q ss_pred HhccCCcccceeeeeccCCCCCCchh----hhccccCcEEeeecccCCCc----CCccccccCCCcEEEccCcccccccC
Q 041391 409 KELKNMSALRLLSLQGVYGIREIPSS----IANLSNLRVLDLRCCYYLTK----LPKGLDSLKKLTYLDISECYLIEYMP 480 (704)
Q Consensus 409 ~~l~~L~~Lr~L~Ls~n~~l~~lP~~----l~~L~~L~~LdLs~c~~l~~----lP~~i~~L~~L~~L~Ls~n~~~~~lP 480 (704)
..+..+..+..++||+|+.-++-..+ |.+-.+|++.+++.- .++. +|..+. .+-
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~-----------------~Ll 85 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV-----------------MLL 85 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH-----------------HHH
Confidence 44455777888888887644433333 344566776666652 3322 221110 011
Q ss_pred ccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEEEeeCCCCchh-hHH---------HHhccCCCc
Q 041391 481 KELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSIYVNNNAIPIE-KLS---------ESLEKFKNL 546 (704)
Q Consensus 481 ~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L~~n~~~~~~~-~l~---------~~L~~l~~L 546 (704)
..+-+++.|+.. +++.|.+....+ ++.++-+.|.+|.+++|.+..... .+. .-..+.+.|
T Consensus 86 ~aLlkcp~l~~v------~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 86 KALLKCPRLQKV------DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHhcCCcceee------eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 123344445544 345554433321 222266788888888887542111 111 123345778
Q ss_pred cEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCC--------CC-C
Q 041391 547 LKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLS--------GL-N 617 (704)
Q Consensus 547 ~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~--------~l-~ 617 (704)
++..+..|++.. .....+ ......+.+|+.+.+..|.+. |..+. .. +
T Consensus 160 e~vicgrNRlen---------gs~~~~-------------a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~ 215 (388)
T COG5238 160 EVVICGRNRLEN---------GSKELS-------------AALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHS 215 (388)
T ss_pred eEEEeccchhcc---------CcHHHH-------------HHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCc
Confidence 888777776321 000000 001122357888888887763 22221 12 8
Q ss_pred eeEEEEEcCCCCCcCCC----ccCCCCCcCEEecCCCc
Q 041391 618 LRKLYIRGGQLRSLQGD----THKKYSTVKVLRLRYLN 651 (704)
Q Consensus 618 L~~L~Ls~n~l~~lp~~----~~~~f~~L~~L~L~~l~ 651 (704)
|+.|+|..|-++..... .....+.|+.|.+.+|-
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 88888888877432211 11223557777777763
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.93 E-value=0.0019 Score=58.35 Aligned_cols=84 Identities=25% Similarity=0.260 Sum_probs=45.9
Q ss_pred eecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCc
Q 041391 363 LVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLR 442 (704)
Q Consensus 363 l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~ 442 (704)
+....+.+..+++.+-.+++.+++|++.+|.++ ++|..+..++.||.|+++.| .+...|..|..|.+|-
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis----------dvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS----------DVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhh----------hchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 333444455554555555556666666666443 45555666666666666665 3445555555566666
Q ss_pred EEeeecccCCCcCCcc
Q 041391 443 VLDLRCCYYLTKLPKG 458 (704)
Q Consensus 443 ~LdLs~c~~l~~lP~~ 458 (704)
.|+.-+| -..++|-.
T Consensus 127 ~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPEN-ARAEIDVD 141 (177)
T ss_pred HhcCCCC-ccccCcHH
Confidence 6665554 33444433
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.88 E-value=0.002 Score=72.39 Aligned_cols=134 Identities=26% Similarity=0.288 Sum_probs=68.1
Q ss_pred CcccceeeeeccCCCCC--CchhhhccccCcEEeeecc-cCCCcCC----ccccccCCCcEEEccCccccc-ccCccCC-
Q 041391 414 MSALRLLSLQGVYGIRE--IPSSIANLSNLRVLDLRCC-YYLTKLP----KGLDSLKKLTYLDISECYLIE-YMPKELS- 484 (704)
Q Consensus 414 L~~Lr~L~Ls~n~~l~~--lP~~l~~L~~L~~LdLs~c-~~l~~lP----~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~- 484 (704)
++.|+.|.+.+|..+.. +-......++|+.|++++| ......+ .....+.+|+.|+++++.... ..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666655544 2233455666777776652 1111111 122344667777777665211 1111122
Q ss_pred CCCCcceecccccccCCCCC-Cc-cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEec
Q 041391 485 SLSELQVLKGFLVTDAKPND-KI-CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWG 554 (704)
Q Consensus 485 ~L~~L~~L~~~~~~~ls~n~-l~-~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n 554 (704)
.+++|++|. +..+. ++ ..+..+...+++|+.|++++|..... ..+.....++++|+.|.+...
T Consensus 267 ~c~~L~~L~------l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLS------LSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEc------cCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhc
Confidence 255677763 33332 11 12344544677888888888775422 222333555677777665443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.86 E-value=0.0059 Score=58.86 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=33.0
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc-ccCCCcEEEccCccc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD-SLKKLTYLDISECYL 475 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~-~L~~L~~L~Ls~n~~ 475 (704)
....+||++| .+..++. +..+..|.+|.|++|.. ..+...+. .+++|..|.+.+|.+
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCCcc-eeeccchhhhccccceEEecCcch
Confidence 4456677775 3455544 66667777777776633 33333333 345677777776653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.63 E-value=0.0061 Score=61.10 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=34.0
Q ss_pred cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecc--cCCCcCCccccccCCCcEEEccCccc
Q 041391 412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC--YYLTKLPKGLDSLKKLTYLDISECYL 475 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c--~~l~~lP~~i~~L~~L~~L~Ls~n~~ 475 (704)
-.+..|..|++.++ .++.+-. +-.|++|+.|.++.| .....++.-..++++|++|++++|++
T Consensus 40 d~~~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccccchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 34455555555554 2322222 344667777777766 44445554455556777777776653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.39 E-value=0.0087 Score=59.99 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeecc--CCCCCCchhhhccccCcEEeeecccCC--Cc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGV--YGIREIPSSIANLSNLRVLDLRCCYYL--TK 454 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n--~~l~~lP~~l~~L~~L~~LdLs~c~~l--~~ 454 (704)
..+..|..|.+.+..++.. ..+-.|++|++|.++.| .....++....++++|++|++++|.+. ..
T Consensus 40 d~~~~le~ls~~n~gltt~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-----------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred ccccchhhhhhhccceeec-----------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 3445555555555554421 23445666777777666 334444444555567777777766322 11
Q ss_pred CCccccccCCCcEEEccCccc
Q 041391 455 LPKGLDSLKKLTYLDISECYL 475 (704)
Q Consensus 455 lP~~i~~L~~L~~L~Ls~n~~ 475 (704)
+ ..+..+.+|..|++.+|..
T Consensus 109 l-~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 109 L-RPLKELENLKSLDLFNCSV 128 (260)
T ss_pred c-chhhhhcchhhhhcccCCc
Confidence 1 1234455566666666653
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.40 E-value=0.046 Score=52.91 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=58.2
Q ss_pred ccccccceeEEEEEcCCCCCCcccCCCC--CeeEEEEEcCCCCCcCC-CccCCCCCcCEEecCCCcccccc-ccc-ccCc
Q 041391 589 FGQKDRLLEKLDLHCFPLESLPNWLSGL--NLRKLYIRGGQLRSLQG-DTHKKYSTVKVLRLRYLNELNVN-WRE-LQAL 663 (704)
Q Consensus 589 ~~~lp~~L~~L~Ls~~~l~~lP~~l~~l--~L~~L~Ls~n~l~~lp~-~~~~~f~~L~~L~L~~l~~L~l~-~~~-l~~~ 663 (704)
++.+ +.|.+|.|.+|.+..+...+..+ +|..|.|.+|.+..+.. .....+|.|+.|.+-+.+.-... +.. +.-.
T Consensus 60 lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 4455 48899999998888887666665 79999999988866543 23455788888888776543311 111 1146
Q ss_pred CCCccEEeeecC
Q 041391 664 FPDLEYLEKFNC 675 (704)
Q Consensus 664 ~p~L~~L~i~~C 675 (704)
+|+|+.|+..+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 788888887654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.0046 Score=62.27 Aligned_cols=99 Identities=24% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC--cc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP--KG 458 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP--~~ 458 (704)
+.+.+.|++.+|.++.+ ....+|+.|++|.|+-| .+..+.. +..+++|+.|.|+.| .+..+. ..
T Consensus 18 l~~vkKLNcwg~~L~DI-----------sic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN-~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----------SICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKN-CIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCCccHH-----------HHHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhc-ccccHHHHHH
Confidence 34455666667765422 22456777777777776 4555554 667777777777776 333332 23
Q ss_pred ccccCCCcEEEccCcccccccCcc-----CCCCCCcceec
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKE-----LSSLSELQVLK 493 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~-----i~~L~~L~~L~ 493 (704)
+.+|++|+.|.|..|...+.-+.. +..|++|+.|.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 566777777777777655544432 44567777774
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.0067 Score=61.12 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=51.7
Q ss_pred CCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc--cCCCCCCcc
Q 041391 413 NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK--ELSSLSELQ 490 (704)
Q Consensus 413 ~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~ 490 (704)
.+.+.+.|++.+| .+..+.- +.+++.|++|.|+-| .+..+ ..+..+++|+.|+|..|.+. .+-+ -+.++++|+
T Consensus 17 dl~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCC-CccHHHH-HHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 4667788888887 4555533 567899999999987 44555 34678888999999888642 2221 145666666
Q ss_pred eec
Q 041391 491 VLK 493 (704)
Q Consensus 491 ~L~ 493 (704)
+|.
T Consensus 92 ~LW 94 (388)
T KOG2123|consen 92 TLW 94 (388)
T ss_pred hHh
Confidence 663
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.50 E-value=0.11 Score=31.52 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=8.2
Q ss_pred CcEEEccCcccccccCccC
Q 041391 465 LTYLDISECYLIEYMPKEL 483 (704)
Q Consensus 465 L~~L~Ls~n~~~~~lP~~i 483 (704)
|++|++++|.+. .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555433 444433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.20 E-value=0.04 Score=61.89 Aligned_cols=115 Identities=26% Similarity=0.257 Sum_probs=76.1
Q ss_pred hccccCcEEeeecccCCCc--CCccccccCCCcEEEccCc-ccccccC----ccCCCCCCcceecccccccCCCCC-Cc-
Q 041391 436 ANLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYLDISEC-YLIEYMP----KELSSLSELQVLKGFLVTDAKPND-KI- 506 (704)
Q Consensus 436 ~~L~~L~~LdLs~c~~l~~--lP~~i~~L~~L~~L~Ls~n-~~~~~lP----~~i~~L~~L~~L~~~~~~~ls~n~-l~- 506 (704)
...++|+.|.+.+|..+.. +-......++|+.|++++| ......+ .....+.+|+.|. ++.+. ++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~------l~~~~~isd 258 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLD------LSGCGLVTD 258 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccc------hhhhhccCc
Confidence 3478999999999876665 3355678899999999984 2222222 1233456777773 55444 22
Q ss_pred cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391 507 CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 507 ~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
..+..+...+++|+.|.+..|... ....+......++.|++|+|++|...
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~l-t~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNL-TDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCcc-chhHHHHHHHhcCcccEEeeecCccc
Confidence 224555545789999998877631 12344455677889999999988743
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.66 E-value=0.098 Score=31.69 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=8.2
Q ss_pred CcEEeeecccCCCcCCccc
Q 041391 441 LRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 441 L~~LdLs~c~~l~~lP~~i 459 (704)
|++|||++| .+..+|.+|
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 455555554 222444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.87 E-value=0.19 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=10.8
Q ss_pred CCccEEeeecCCCCCCCC
Q 041391 665 PDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 665 p~L~~L~i~~C~~L~~lP 682 (704)
|+|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 578889998885 88776
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=0.13 Score=49.81 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=27.7
Q ss_pred CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccc--cccCcCCCccEEeeecCCCCCC
Q 041391 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWR--ELQALFPDLEYLEKFNCPMISF 680 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~--~l~~~~p~L~~L~i~~C~~L~~ 680 (704)
.++.++-+++.+...--.-...++.++.|.+.+|..++ .|. .+.+..|+|+.|+|++||.+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d-D~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD-DWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh-hHHHHHhcccccchheeeccCCCeech
Confidence 44455555444422222223334445555555555554 222 1113445555555555555443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.26 E-value=1.7 Score=38.87 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=42.2
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCc
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTK 454 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~ 454 (704)
.+|.++.+|+.+.+... +..+. ...|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.. ....
T Consensus 6 ~~F~~~~~l~~i~~~~~-~~~I~---------~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~ 71 (129)
T PF13306_consen 6 NAFYNCSNLESITFPNT-IKKIG---------ENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKS 71 (129)
T ss_dssp TTTTT-TT--EEEETST---EE----------TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-E
T ss_pred HHHhCCCCCCEEEECCC-eeEeC---------hhhccccccccccccccc--ccccceeeeecccccccccccc--cccc
Confidence 45777778888887643 32211 234667777888887763 444443 356666777777754 2333
Q ss_pred CCc-cccccCCCcEEEccCc
Q 041391 455 LPK-GLDSLKKLTYLDISEC 473 (704)
Q Consensus 455 lP~-~i~~L~~L~~L~Ls~n 473 (704)
++. .+..+++|+.+.+..+
T Consensus 72 i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccccccCcc
Confidence 333 3455777777777543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.46 E-value=0.043 Score=54.12 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..++..++||++.|++- .+-..|+-++.|..|+++.| -+..+|..++.+..+..+++..| ....+|.
T Consensus 38 i~~~kr~tvld~~s~r~v----------n~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV----------NLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKN-NHSQQPK 105 (326)
T ss_pred hhccceeeeehhhhhHHH----------hhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhcc-chhhCCc
Confidence 455677889999988653 23355677888889999986 58889998999999999988875 7788999
Q ss_pred cccccCCCcEEEccCcccc
Q 041391 458 GLDSLKKLTYLDISECYLI 476 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~ 476 (704)
++++++.++++++-++.+.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 9999999999999887643
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=0.47 Score=46.14 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=47.0
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhh-ccccCcEEeeecccCCCcC-Cccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIA-NLSNLRVLDLRCCYYLTKL-PKGL 459 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~-~L~~L~~LdLs~c~~l~~l-P~~i 459 (704)
.++.+|-+++.+.+. -...+.+++.++.|.+.+|......- +-++ -.++|+.|+|++|..+++- -..+
T Consensus 102 ~IeaVDAsds~I~~e---------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE---------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred eEEEEecCCchHHHH---------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence 356677777755421 12456677777777787775543221 1122 2467888888888766543 1235
Q ss_pred cccCCCcEEEccC
Q 041391 460 DSLKKLTYLDISE 472 (704)
Q Consensus 460 ~~L~~L~~L~Ls~ 472 (704)
.++++|+.|.+.+
T Consensus 173 ~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 173 LKLKNLRRLHLYD 185 (221)
T ss_pred HHhhhhHHHHhcC
Confidence 5666677666654
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.37 E-value=3.9 Score=36.57 Aligned_cols=89 Identities=16% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeee
Q 041391 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLR 447 (704)
Q Consensus 369 ~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs 447 (704)
.+..+...+|..+.+|+.+.+..+ +..+. ...|.++..|+.+.+..+ +..++ ..+..+.+|+.+++.
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~---------~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIG---------DNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE----------TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEET
T ss_pred CeeEeChhhccccccccccccccc-ccccc---------eeeeeccccccccccccc--ccccccccccccccccccccC
Confidence 344455567899999999999875 43221 145788888999999762 44444 346678999999997
Q ss_pred cccCCCcCCc-cccccCCCcEEEccC
Q 041391 448 CCYYLTKLPK-GLDSLKKLTYLDISE 472 (704)
Q Consensus 448 ~c~~l~~lP~-~i~~L~~L~~L~Ls~ 472 (704)
.+ +..++. .+.+. +|+.+.+..
T Consensus 90 ~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 90 SN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT---BEEHTTTTTT--T--EEE-TT
T ss_pred cc--ccEEchhhhcCC-CceEEEECC
Confidence 53 444433 45665 888887765
No 78
>PRK04841 transcriptional regulator MalT; Provisional
Probab=76.69 E-value=12 Score=45.85 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhcccc---ccchh----hHHHHHHHHHH-hhhhchhhhHHHH
Q 041391 173 SREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFRE---KFGFD----EFMEMIINFRN-KFRNLKNESKFCL 244 (704)
Q Consensus 173 l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~---~~~w~----~~~~i~~~L~l-SYd~L~~~lK~cF 244 (704)
...++.+.|+|.|++ +..++..+..... ...|. ....+...|.- -|+.||++.+..+
T Consensus 207 ~~~~l~~~t~Gwp~~---------------l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l 271 (903)
T PRK04841 207 ESSRLCDDVEGWATA---------------LQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFL 271 (903)
T ss_pred HHHHHHHHhCChHHH---------------HHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Confidence 356799999999999 4333333322110 00010 00113333322 3789999999999
Q ss_pred HHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeC
Q 041391 245 WCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMD 324 (704)
Q Consensus 245 Ly~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mH 324 (704)
+..|+++ .++. ++.. .... .+.+...+++|...+++...... ....|..|
T Consensus 272 ~~~a~~~---~~~~-~l~~-----~l~~-----------------~~~~~~~L~~l~~~~l~~~~~~~----~~~~yr~H 321 (903)
T PRK04841 272 LRCSVLR---SMND-ALIV-----RVTG-----------------EENGQMRLEELERQGLFIQRMDD----SGEWFRYH 321 (903)
T ss_pred HHhcccc---cCCH-HHHH-----HHcC-----------------CCcHHHHHHHHHHCCCeeEeecC----CCCEEehh
Confidence 9999986 3342 2222 1110 11246789999999997543211 12468899
Q ss_pred HHHHHHHHHhc
Q 041391 325 PLARLAVINSR 335 (704)
Q Consensus 325 Dll~dla~~i~ 335 (704)
++++++...-.
T Consensus 322 ~L~r~~l~~~l 332 (903)
T PRK04841 322 PLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.07 E-value=0.076 Score=59.52 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=87.5
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCC-cccceeeeeccCCCC----CCchhhhccccCcEEeeeccc
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNM-SALRLLSLQGVYGIR----EIPSSIANLSNLRVLDLRCCY 450 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L-~~Lr~L~Ls~n~~l~----~lP~~l~~L~~L~~LdLs~c~ 450 (704)
..+.....|..|++++|.+... ....+-..+... ..|++|.+..|.... .+...+....+|+.|+++.|.
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~-----g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDE-----GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHhcccccHhHhhcccCCCccH-----hHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 4566677777777777766421 111222333333 556667777664322 233445556777777777764
Q ss_pred CCC----cCCcccc----ccCCCcEEEccCccccccc----CccCCCCCC-cceecccccccCCCCCCccc-h----hhH
Q 041391 451 YLT----KLPKGLD----SLKKLTYLDISECYLIEYM----PKELSSLSE-LQVLKGFLVTDAKPNDKICT-L----EDL 512 (704)
Q Consensus 451 ~l~----~lP~~i~----~L~~L~~L~Ls~n~~~~~l----P~~i~~L~~-L~~L~~~~~~~ls~n~l~~~-~----~~l 512 (704)
... .++..+. ...++++|.+.+|.++... -..+...++ +..| ++..|.+... . +.+
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el------~l~~n~l~d~g~~~L~~~l 257 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLREL------DLASNKLGDVGVEKLLPCL 257 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHH------HHHhcCcchHHHHHHHHHh
Confidence 421 1222222 3556777777777543111 011233333 4444 3555544322 1 223
Q ss_pred HhCC-CCCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCC
Q 041391 513 GNSL-KELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 513 ~~~L-~~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l 556 (704)
. .+ ..++.++++.|.+... ...+...+..+++++.|.++.|.+
T Consensus 258 ~-~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 258 S-VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred c-ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3 33 4557777777766543 234445566666777777776664
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.20 E-value=0.19 Score=49.68 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=69.0
Q ss_pred HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCC
Q 041391 409 KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE 488 (704)
Q Consensus 409 ~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~ 488 (704)
..+........||++.| .+..+...++.++.|..|+++.| .+..+|.+++.+..++++++..|. ....|..++.++.
T Consensus 36 ~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCC
Confidence 34667788899999997 45566677888999999999986 678899999999999999998887 5688999999999
Q ss_pred ccee
Q 041391 489 LQVL 492 (704)
Q Consensus 489 L~~L 492 (704)
++.+
T Consensus 113 ~k~~ 116 (326)
T KOG0473|consen 113 PKKN 116 (326)
T ss_pred cchh
Confidence 9988
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=71.76 E-value=0.28 Score=54.99 Aligned_cols=162 Identities=27% Similarity=0.190 Sum_probs=103.6
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC----CCchhhh----ccccCcEEeeecccCCC
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR----EIPSSIA----NLSNLRVLDLRCCYYLT 453 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~----~lP~~l~----~L~~L~~LdLs~c~~l~ 453 (704)
..|++|.+..|.++... ...+...+....+|+.++++.|.... .++..+. ...++++|.+++|....
T Consensus 144 ~~l~~L~l~~c~l~~~g-----~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEG-----AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHHHHHHhhcccccccc-----hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence 66788888888776432 23567778889999999999985431 1223333 47889999999985431
Q ss_pred ----cCCccccccCC-CcEEEccCcccccc----cCccCCCC-CCcceecccccccCCCCCCccch-----hhHHhCCCC
Q 041391 454 ----KLPKGLDSLKK-LTYLDISECYLIEY----MPKELSSL-SELQVLKGFLVTDAKPNDKICTL-----EDLGNSLKE 518 (704)
Q Consensus 454 ----~lP~~i~~L~~-L~~L~Ls~n~~~~~----lP~~i~~L-~~L~~L~~~~~~~ls~n~l~~~~-----~~l~~~L~~ 518 (704)
.+-..+...+. ++.|++..|.+... +...+..+ ..++++ ++..|.+...- ..+. .+..
T Consensus 219 ~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l------~l~~nsi~~~~~~~L~~~l~-~~~~ 291 (478)
T KOG4308|consen 219 SSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVL------DLSRNSITEKGVRDLAEVLV-SCRQ 291 (478)
T ss_pred HHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhh------hhhcCCccccchHHHHHHHh-hhHH
Confidence 11223344455 67789988875422 23334555 567777 47777766432 2344 6778
Q ss_pred CcEEEEEeeCCCCch-hhHHHHhccCCCccEEEEEecC
Q 041391 519 LRKLSIYVNNNAIPI-EKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 519 L~~L~L~~n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
++.|.++.|.+.... ..+...+.....+..+.+.++.
T Consensus 292 l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 292 LEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 999999999876432 2333455566677777776554
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.01 E-value=2.5 Score=26.79 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=12.9
Q ss_pred cceeEEEEEcCCCCCCcc
Q 041391 594 RLLEKLDLHCFPLESLPN 611 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~~lP~ 611 (704)
.+|+.|++++|.+..+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467777777777777775
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.05 E-value=3.1 Score=26.11 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=13.4
Q ss_pred CCCccEEeeecCCCCCC
Q 041391 664 FPDLEYLEKFNCPMISF 680 (704)
Q Consensus 664 ~p~L~~L~i~~C~~L~~ 680 (704)
+|+|+.|++.+|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47788888888888764
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.28 E-value=4.2 Score=25.37 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=12.0
Q ss_pred ceeEEEEEcCCCCCCcccC
Q 041391 595 LLEKLDLHCFPLESLPNWL 613 (704)
Q Consensus 595 ~L~~L~Ls~~~l~~lP~~l 613 (704)
+|+.|+|++|.+..+|...
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 5666666666666666543
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.28 E-value=4.2 Score=25.37 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=12.0
Q ss_pred ceeEEEEEcCCCCCCcccC
Q 041391 595 LLEKLDLHCFPLESLPNWL 613 (704)
Q Consensus 595 ~L~~L~Ls~~~l~~lP~~l 613 (704)
+|+.|+|++|.+..+|...
T Consensus 3 ~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCEEECCCCcCCcCCHHH
Confidence 5666666666666666543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.74 E-value=8.9 Score=42.96 Aligned_cols=80 Identities=23% Similarity=0.190 Sum_probs=48.5
Q ss_pred ceeEEEEEcCCCCCCcccCCCC-----CeeEEEEEcC--CCCCcCCCccCCCCCcCEEecCCCccccccc-------ccc
Q 041391 595 LLEKLDLHCFPLESLPNWLSGL-----NLRKLYIRGG--QLRSLQGDTHKKYSTVKVLRLRYLNELNVNW-------REL 660 (704)
Q Consensus 595 ~L~~L~Ls~~~l~~lP~~l~~l-----~L~~L~Ls~n--~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~-------~~l 660 (704)
.+..+.|++|++..+. .+..+ +|..|+|++| .+.+.+....-....|+.|.|.+++.-+ .. +.+
T Consensus 219 ~i~sl~lsnNrL~~Ld-~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~-tf~~~s~yv~~i 296 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLD-ALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT-TFSDRSEYVSAI 296 (585)
T ss_pred ceeeeecccchhhchh-hhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc-chhhhHHHHHHH
Confidence 6788888888875552 22222 8888999988 4443333333345667778887766544 11 112
Q ss_pred cCcCCCccEEeeecCC
Q 041391 661 QALFPDLEYLEKFNCP 676 (704)
Q Consensus 661 ~~~~p~L~~L~i~~C~ 676 (704)
...||.|..|+=..-+
T Consensus 297 ~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 297 RELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHhcchheeecCcccC
Confidence 2578888877654443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=43.32 E-value=3.9 Score=25.03 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=5.1
Q ss_pred CCCcEEEccCcc
Q 041391 463 KKLTYLDISECY 474 (704)
Q Consensus 463 ~~L~~L~Ls~n~ 474 (704)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 345555555554
No 88
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=41.48 E-value=54 Score=29.75 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHhhcChHHHhHhhchhhhhh---chHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCcccc
Q 041391 117 KQKDNLVKKYLDKIKKDSTENREKLGELIKDHI---RRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLV 187 (704)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLA 187 (704)
++.+.|++....-+++...........+.+|+- +--+|....+.+.+......+.+.+.+||+. |.||.
T Consensus 4 en~d~l~~~W~~~mk~~~~e~~~~~isd~vye~Ts~Efv~li~s~~~~~~~~~~e~L~eFaer~Vql--GwpL~ 75 (129)
T PF08678_consen 4 ENKDELLNRWMEEMKELRDERYLDIISDQVYENTSREFVDLILSNSTEDNEEFEERLDEFAERVVQL--GWPLK 75 (129)
T ss_dssp HTHHHHHHHHHHHHHHHHTTS-SS---HHHHHHHHHHHHHHHH-H-SS-SSTTHHHHHHHHHHHHHT--T--HH
T ss_pred hhHHHHHHHHHHHHHHhhcchHHHhccHHHHHHhHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHc--CccHH
Confidence 567788887555555554444333334444432 2235555556666556788999999999997 99998
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.21 E-value=38 Score=21.51 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=9.4
Q ss_pred CCccEEEcCCCCCc
Q 041391 382 KKVKVLHLGRWKNS 395 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~ 395 (704)
.+|+.|+|+.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46677777777654
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.43 E-value=68 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=9.1
Q ss_pred CCccEEEcCCCCCc
Q 041391 382 KKVKVLHLGRWKNS 395 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~ 395 (704)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777553
Done!