Query 041391
Match_columns 704
No_of_seqs 614 out of 3401
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4E-27 227.2 20.9 296 359-677 33-332 (477)
2 4eco_A Uncharacterized protein 99.9 9.5E-24 3.2E-28 244.7 9.8 259 377-650 201-498 (636)
3 3v47_A TOLL-like receptor 5B a 99.9 9E-23 3.1E-27 226.5 15.2 308 358-682 30-412 (455)
4 4eco_A Uncharacterized protein 99.9 6.9E-23 2.3E-27 237.5 14.6 301 356-684 247-584 (636)
5 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-23 9E-28 219.7 9.7 255 382-683 50-309 (313)
6 3rgz_A Protein brassinosteroid 99.9 8E-23 2.7E-27 242.1 13.8 281 381-683 393-722 (768)
7 4ecn_A Leucine-rich repeat pro 99.9 9.9E-23 3.4E-27 241.6 14.0 170 375-557 441-632 (876)
8 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-23 1.1E-27 219.0 7.8 248 358-653 50-304 (313)
9 4ecn_A Leucine-rich repeat pro 99.9 2.4E-22 8.3E-27 238.2 15.2 303 356-684 489-824 (876)
10 3rgz_A Protein brassinosteroid 99.9 2.3E-22 8E-27 238.1 13.2 280 359-682 395-744 (768)
11 3t6q_A CD180 antigen; protein- 99.9 4.2E-22 1.4E-26 229.4 11.5 303 359-683 255-565 (606)
12 3o6n_A APL1; leucine-rich repe 99.9 2.5E-21 8.7E-26 210.7 16.5 288 359-676 46-350 (390)
13 3oja_B Anopheles plasmodium-re 99.9 1.6E-21 5.6E-26 224.3 15.4 282 359-676 52-356 (597)
14 1xku_A Decorin; proteoglycan, 99.9 6.6E-21 2.3E-25 202.5 18.2 266 359-675 53-329 (330)
15 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-21 1.5E-25 204.1 16.9 266 359-676 55-331 (332)
16 4fcg_A Uncharacterized protein 99.9 2.9E-21 9.9E-26 205.4 14.6 153 380-555 79-240 (328)
17 2id5_A Lingo-1, leucine rich r 99.9 6E-21 2.1E-25 213.3 17.5 273 358-652 56-332 (477)
18 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-21 2E-25 215.8 17.4 108 358-477 21-129 (520)
19 4fmz_A Internalin; leucine ric 99.8 4.3E-20 1.5E-24 197.4 22.9 260 359-682 67-327 (347)
20 2z81_A CD282 antigen, TOLL-lik 99.8 5.7E-21 1.9E-25 217.2 16.6 126 358-492 50-177 (549)
21 4fcg_A Uncharacterized protein 99.8 1.9E-21 6.6E-26 206.7 11.6 224 360-632 83-317 (328)
22 3j0a_A TOLL-like receptor 5; m 99.8 7E-21 2.4E-25 227.8 17.6 295 359-675 25-372 (844)
23 3v47_A TOLL-like receptor 5B a 99.8 3.4E-21 1.1E-25 213.8 13.1 275 357-651 53-406 (455)
24 3t6q_A CD180 antigen; protein- 99.8 1.4E-20 4.7E-25 216.8 17.8 157 359-531 34-193 (606)
25 2z7x_B TOLL-like receptor 1, v 99.8 2.1E-20 7E-25 211.3 18.5 152 500-682 331-485 (520)
26 2a5y_B CED-4; apoptosis; HET: 99.8 9E-22 3.1E-26 223.8 6.1 153 149-340 296-473 (549)
27 3vq2_A TLR4, TOLL-like recepto 99.8 9E-20 3.1E-24 209.9 22.0 268 359-650 33-338 (606)
28 4fmz_A Internalin; leucine ric 99.8 1.1E-19 3.8E-24 194.2 20.8 258 356-676 86-344 (347)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.4E-20 2.5E-24 208.9 19.6 120 358-492 52-174 (562)
30 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-20 9.4E-25 217.3 16.2 159 358-532 25-186 (680)
31 3o6n_A APL1; leucine-rich repe 99.8 5.6E-20 1.9E-24 200.0 16.4 267 358-651 69-350 (390)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.3E-20 2.2E-24 209.5 17.3 83 356-451 74-158 (562)
33 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-20 9.8E-25 211.4 14.3 182 358-558 26-210 (549)
34 3bz5_A Internalin-J, INLJ; leu 99.8 2E-19 6.8E-24 199.9 20.5 254 359-683 43-304 (457)
35 3oja_B Anopheles plasmodium-re 99.8 5.4E-20 1.9E-24 211.6 15.7 267 358-651 75-356 (597)
36 1xku_A Decorin; proteoglycan, 99.8 2.1E-19 7.2E-24 190.9 18.8 244 382-677 52-305 (330)
37 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-19 1.4E-23 212.4 22.3 301 358-683 48-398 (844)
38 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.2E-24 194.7 15.6 249 359-651 53-312 (353)
39 1o6v_A Internalin A; bacterial 99.8 8.4E-19 2.9E-23 195.5 22.8 275 359-676 69-364 (466)
40 1ziw_A TOLL-like receptor 3; i 99.8 2.5E-19 8.5E-24 209.2 19.1 235 416-682 382-626 (680)
41 3vq2_A TLR4, TOLL-like recepto 99.8 4E-20 1.4E-24 212.9 11.7 285 378-691 281-571 (606)
42 2z63_A TOLL-like receptor 4, v 99.8 4.3E-20 1.5E-24 210.7 11.9 99 584-684 436-537 (570)
43 1o6v_A Internalin A; bacterial 99.8 1E-18 3.5E-23 194.8 22.6 284 359-681 47-346 (466)
44 2z63_A TOLL-like receptor 4, v 99.8 2.1E-19 7.3E-24 205.0 17.5 264 359-647 29-332 (570)
45 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-19 6.5E-24 191.5 15.2 243 382-677 54-306 (332)
46 3zyi_A Leucine-rich repeat-con 99.8 4.2E-19 1.4E-23 197.1 16.3 222 382-651 75-301 (452)
47 3zyj_A Leucine-rich repeat-con 99.8 5.1E-19 1.7E-23 195.8 16.6 222 382-651 64-290 (440)
48 1wwl_A Monocyte differentiatio 99.8 1.4E-19 4.7E-24 191.0 10.9 223 384-651 65-307 (312)
49 2z66_A Variable lymphocyte rec 99.8 2.6E-19 8.8E-24 188.0 12.5 224 382-651 28-259 (306)
50 2z66_A Variable lymphocyte rec 99.8 2.1E-19 7.1E-24 188.8 11.4 243 385-677 10-260 (306)
51 4g8a_A TOLL-like receptor 4; l 99.8 2.8E-19 9.6E-24 206.2 12.7 97 585-682 486-584 (635)
52 3zyi_A Leucine-rich repeat-con 99.8 9.3E-19 3.2E-23 194.3 16.0 224 359-629 76-303 (452)
53 3bz5_A Internalin-J, INLJ; leu 99.8 3.1E-18 1.1E-22 190.3 20.0 164 357-558 63-226 (457)
54 3zyj_A Leucine-rich repeat-con 99.8 1.7E-18 6E-23 191.5 16.8 223 359-628 65-291 (440)
55 2z80_A TOLL-like receptor 2, v 99.8 1.7E-18 5.8E-23 185.7 14.8 251 382-682 52-318 (353)
56 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-18 6.2E-23 179.7 13.9 203 381-628 31-237 (285)
57 1wwl_A Monocyte differentiatio 99.8 8.6E-19 2.9E-23 184.8 10.7 203 380-630 93-310 (312)
58 3o53_A Protein LRIM1, AGAP0063 99.8 3.9E-20 1.3E-24 195.6 0.3 254 369-680 21-277 (317)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.2E-24 190.5 3.3 263 359-679 35-300 (317)
60 1ozn_A Reticulon 4 receptor; N 99.7 4.8E-18 1.6E-22 176.5 13.0 219 385-652 14-237 (285)
61 4g8a_A TOLL-like receptor 4; l 99.7 1.8E-17 6.2E-22 191.0 15.7 133 359-508 53-188 (635)
62 2z62_A TOLL-like receptor 4, v 99.7 1.9E-17 6.5E-22 171.1 13.7 203 382-628 28-236 (276)
63 2z62_A TOLL-like receptor 4, v 99.7 2.3E-17 7.8E-22 170.5 14.2 208 406-651 21-235 (276)
64 4glp_A Monocyte differentiatio 99.7 1.4E-17 4.9E-22 175.2 12.4 229 381-651 63-305 (310)
65 3oja_A Leucine-rich immune mol 99.7 1.4E-18 4.7E-23 194.8 4.2 237 379-673 31-270 (487)
66 1p9a_G Platelet glycoprotein I 99.7 2.8E-17 9.5E-22 171.5 12.6 201 378-629 6-208 (290)
67 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-16 8.3E-21 180.8 21.2 236 382-677 61-296 (622)
68 1jl5_A Outer protein YOPM; leu 99.7 1.8E-17 6.2E-22 184.0 11.1 269 358-682 11-293 (454)
69 1jl5_A Outer protein YOPM; leu 99.7 2.3E-16 7.8E-21 175.1 19.6 53 593-651 316-368 (454)
70 1h6u_A Internalin H; cell adhe 99.7 8E-17 2.7E-21 169.5 14.4 197 378-633 37-234 (308)
71 3oja_A Leucine-rich immune mol 99.7 2.7E-17 9.3E-22 184.2 10.3 224 406-678 21-250 (487)
72 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.6E-21 162.3 16.5 150 383-555 17-168 (270)
73 3g06_A SSPH2 (leucine-rich rep 99.7 5.4E-16 1.8E-20 178.0 20.3 236 359-653 62-297 (622)
74 4glp_A Monocyte differentiatio 99.7 4.4E-17 1.5E-21 171.5 10.0 205 380-629 89-307 (310)
75 2ca6_A RAN GTPase-activating p 99.7 2.7E-18 9.1E-23 186.5 -0.7 264 376-674 26-339 (386)
76 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 160.4 15.5 196 416-651 17-216 (270)
77 1h6u_A Internalin H; cell adhe 99.7 2.9E-16 9.9E-21 165.2 13.6 191 411-651 37-228 (308)
78 1p9a_G Platelet glycoprotein I 99.7 3.4E-16 1.2E-20 163.1 13.8 199 410-651 5-206 (290)
79 2ca6_A RAN GTPase-activating p 99.7 1.2E-17 4.1E-22 181.4 1.2 244 405-676 22-314 (386)
80 2xwt_C Thyrotropin receptor; s 99.6 2.2E-16 7.4E-21 159.6 9.8 52 595-649 180-235 (239)
81 2ast_B S-phase kinase-associat 99.6 2.1E-17 7.3E-22 175.5 2.4 249 384-683 49-310 (336)
82 2xwt_C Thyrotropin receptor; s 99.6 8.2E-16 2.8E-20 155.3 13.2 195 440-678 32-239 (239)
83 3rfs_A Internalin B, repeat mo 99.6 2.4E-15 8.1E-20 155.2 15.4 179 359-560 42-221 (272)
84 3goz_A Leucine-rich repeat-con 99.6 1.7E-16 5.8E-21 170.8 5.6 251 368-651 8-295 (362)
85 3sfz_A APAF-1, apoptotic pepti 99.6 8.2E-16 2.8E-20 191.2 12.3 145 148-338 288-452 (1249)
86 3goz_A Leucine-rich repeat-con 99.6 5.3E-17 1.8E-21 174.8 0.9 254 386-676 2-295 (362)
87 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 159.7 14.9 237 385-674 12-255 (350)
88 1z7x_W Ribonuclease inhibitor; 99.6 2.1E-17 7.2E-22 183.4 -3.3 285 360-676 87-409 (461)
89 3rfs_A Internalin B, repeat mo 99.6 4.7E-15 1.6E-19 152.9 14.4 132 379-529 38-169 (272)
90 4ay9_X Follicle-stimulating ho 99.6 2.1E-15 7.2E-20 161.5 12.1 218 382-649 30-255 (350)
91 2ast_B S-phase kinase-associat 99.6 1.2E-16 4E-21 169.8 1.4 208 377-626 63-282 (336)
92 1z7x_W Ribonuclease inhibitor; 99.6 5.3E-17 1.8E-21 180.2 -2.6 85 594-679 284-383 (461)
93 3m19_A Variable lymphocyte rec 99.6 1E-14 3.6E-19 148.4 13.3 108 416-529 36-143 (251)
94 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 148.2 13.2 176 415-629 14-192 (251)
95 4ezg_A Putative uncharacterize 99.6 7.6E-15 2.6E-19 143.7 10.6 154 379-557 41-194 (197)
96 1h6t_A Internalin B; cell adhe 99.5 1.3E-14 4.5E-19 151.2 11.8 147 379-555 43-189 (291)
97 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.7E-19 149.4 12.6 173 412-632 43-216 (291)
98 1m9s_A Internalin B; cell inva 99.5 1.8E-14 6.2E-19 165.0 11.3 148 379-556 40-187 (605)
99 3cvr_A Invasion plasmid antige 99.5 3.9E-14 1.3E-18 160.6 13.6 179 383-629 60-243 (571)
100 1vt4_I APAF-1 related killer D 99.5 1.4E-14 4.8E-19 168.9 10.0 135 147-332 299-437 (1221)
101 3cvr_A Invasion plasmid antige 99.5 4.8E-14 1.6E-18 159.9 13.8 176 416-652 60-242 (571)
102 1m9s_A Internalin B; cell inva 99.5 9.1E-14 3.1E-18 159.2 12.0 166 359-556 44-209 (605)
103 4ezg_A Putative uncharacterize 99.5 3.3E-13 1.1E-17 132.0 13.1 130 412-556 41-171 (197)
104 3ogk_B Coronatine-insensitive 99.4 3.4E-14 1.2E-18 162.6 4.7 171 375-555 66-254 (592)
105 3e6j_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 135.2 11.4 131 382-530 40-172 (229)
106 1z6t_A APAF-1, apoptotic prote 99.4 3.1E-13 1.1E-17 155.0 12.2 141 149-335 289-449 (591)
107 3ogk_B Coronatine-insensitive 99.4 4.1E-14 1.4E-18 162.0 4.7 86 594-681 436-528 (592)
108 2v9t_B SLIT homolog 2 protein 99.4 2.4E-13 8.3E-18 135.5 9.4 112 410-528 51-163 (220)
109 2o6s_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 128.7 14.1 109 411-527 48-158 (208)
110 2v70_A SLIT-2, SLIT homolog 2 99.4 2.8E-13 9.5E-18 135.1 8.6 113 435-557 53-166 (220)
111 1dce_A Protein (RAB geranylger 99.4 3.6E-15 1.2E-19 169.7 -6.2 120 488-647 442-567 (567)
112 1xeu_A Internalin C; cellular 99.4 2.5E-13 8.7E-18 139.3 6.6 147 380-557 17-163 (263)
113 1dce_A Protein (RAB geranylger 99.4 3.7E-15 1.3E-19 169.6 -8.0 209 412-671 346-566 (567)
114 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.8E-17 134.5 11.1 149 378-557 37-185 (263)
115 2o6s_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 130.2 9.2 178 385-593 10-189 (208)
116 2xot_A Amphoterin-induced prot 99.4 9.2E-13 3.1E-17 141.6 10.1 161 382-561 39-206 (361)
117 2v9t_B SLIT homolog 2 protein 99.4 2.6E-12 8.8E-17 128.0 11.6 154 385-561 14-169 (220)
118 2p1m_B Transport inhibitor res 99.3 3.6E-14 1.2E-18 162.5 -3.8 61 617-677 457-518 (594)
119 3e6j_A Variable lymphocyte rec 99.3 5.1E-12 1.7E-16 126.7 12.1 155 384-561 21-176 (229)
120 2xot_A Amphoterin-induced prot 99.3 1.1E-12 3.7E-17 141.0 7.6 154 385-557 21-176 (361)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 3.4E-12 1.2E-16 127.1 10.4 137 382-533 32-169 (220)
122 2ell_A Acidic leucine-rich nuc 99.3 3.9E-12 1.3E-16 120.8 10.2 131 381-529 23-159 (168)
123 4b8c_D Glucose-repressible alc 99.3 3.6E-13 1.2E-17 157.8 3.4 117 408-534 217-333 (727)
124 2p1m_B Transport inhibitor res 99.3 4.6E-13 1.6E-17 153.3 3.5 132 413-553 103-244 (594)
125 2ell_A Acidic leucine-rich nuc 99.3 4.8E-12 1.6E-16 120.2 9.7 137 412-557 21-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.3 3.6E-12 1.2E-16 118.5 6.2 127 381-524 16-147 (149)
127 4b8c_D Glucose-repressible alc 99.3 1.8E-12 6.1E-17 151.9 4.9 119 374-511 216-334 (727)
128 1w8a_A SLIT protein; signaling 99.3 1.1E-11 3.7E-16 120.7 9.6 129 385-532 11-141 (192)
129 2je0_A Acidic leucine-rich nuc 99.2 3.5E-12 1.2E-16 118.6 5.1 132 412-552 14-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.2 2.5E-11 8.7E-16 118.2 10.6 127 385-530 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.3E-16 116.3 7.2 130 378-529 15-152 (176)
132 1ds9_A Outer arm dynein; leuci 99.2 5.1E-13 1.7E-17 130.8 -5.7 155 381-550 17-180 (198)
133 1w8a_A SLIT protein; signaling 99.2 1E-10 3.5E-15 113.7 10.7 111 383-509 30-142 (192)
134 2wfh_A SLIT homolog 2 protein 99.1 6.7E-11 2.3E-15 115.2 8.7 132 417-561 12-143 (193)
135 2o6r_A Variable lymphocyte rec 99.1 2E-10 6.8E-15 109.9 11.6 131 384-534 9-141 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.1 4.9E-11 1.7E-15 114.2 7.0 134 410-555 14-151 (176)
137 2o6r_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 108.2 9.1 133 416-560 8-140 (177)
138 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 121.4 -3.9 131 376-530 42-185 (198)
139 3g39_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 100.9 10.2 106 384-508 11-117 (170)
140 2r9u_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 100.4 10.2 106 385-509 15-121 (174)
141 3g39_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 100.0 9.2 121 416-545 10-133 (170)
142 3sb4_A Hypothetical leucine ri 98.8 4.7E-09 1.6E-13 110.9 8.3 123 516-671 201-327 (329)
143 2r9u_A Variable lymphocyte rec 98.8 7.1E-09 2.4E-13 99.0 8.6 105 417-532 14-120 (174)
144 3un9_A NLR family member X1; l 98.7 3.9E-09 1.3E-13 113.5 2.2 165 381-557 71-252 (372)
145 3sb4_A Hypothetical leucine ri 98.7 2.4E-08 8.2E-13 105.4 7.2 252 381-684 24-315 (329)
146 4fdw_A Leucine rich hypothetic 98.6 1.3E-06 4.4E-11 94.8 18.8 250 370-673 124-378 (401)
147 2ifg_A High affinity nerve gro 98.6 1E-07 3.4E-12 101.2 9.4 68 407-476 24-93 (347)
148 2ifg_A High affinity nerve gro 98.6 6.8E-08 2.3E-12 102.5 8.0 106 418-532 11-118 (347)
149 3un9_A NLR family member X1; l 98.5 1.5E-08 5.2E-13 108.9 0.4 136 381-532 100-254 (372)
150 4fdw_A Leucine rich hypothetic 98.4 1.7E-06 5.8E-11 93.8 15.0 225 370-649 146-379 (401)
151 2ra8_A Uncharacterized protein 98.4 1.9E-07 6.6E-12 99.7 4.6 41 515-555 250-290 (362)
152 2ra8_A Uncharacterized protein 98.3 4.6E-07 1.6E-11 96.7 5.9 169 378-557 135-320 (362)
153 1io0_A Tropomodulin; LRR prote 97.8 1.4E-05 4.9E-10 76.6 4.3 93 376-474 30-134 (185)
154 3rw6_A Nuclear RNA export fact 97.6 1.5E-05 5.1E-10 81.0 1.9 80 412-493 167-257 (267)
155 3e4g_A ATP synthase subunit S, 97.6 5.5E-05 1.9E-09 71.5 5.3 86 382-476 61-152 (176)
156 3rw6_A Nuclear RNA export fact 97.5 7E-05 2.4E-09 76.0 5.7 83 379-470 167-258 (267)
157 1io0_A Tropomodulin; LRR prote 97.5 3.8E-05 1.3E-09 73.6 3.4 70 407-476 28-106 (185)
158 3e4g_A ATP synthase subunit S, 97.3 0.00013 4.6E-09 68.8 3.9 61 414-474 60-125 (176)
159 4fs7_A Uncharacterized protein 97.2 0.0027 9.3E-08 68.2 13.9 276 359-673 72-374 (394)
160 4gt6_A Cell surface protein; l 97.0 0.0087 3E-07 64.1 15.3 52 595-648 289-342 (394)
161 4fs7_A Uncharacterized protein 96.9 0.0034 1.2E-07 67.4 11.4 215 376-649 156-375 (394)
162 4h09_A Hypothetical leucine ri 95.5 0.13 4.3E-06 54.5 13.5 54 594-648 263-318 (379)
163 4h09_A Hypothetical leucine ri 95.0 0.36 1.2E-05 50.8 15.2 53 594-647 286-340 (379)
164 3rfe_A Platelet glycoprotein I 93.9 0.058 2E-06 48.0 5.0 53 598-651 12-66 (130)
165 4gt6_A Cell surface protein; l 91.8 0.5 1.7E-05 50.2 9.6 127 410-555 260-389 (394)
166 1pgv_A TMD-1, tropomodulin TMD 91.0 0.13 4.4E-06 49.2 3.4 67 409-475 35-110 (197)
167 3rfe_A Platelet glycoprotein I 90.3 0.33 1.1E-05 43.0 5.2 34 440-474 32-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 89.2 0.35 1.2E-05 46.2 4.8 67 378-450 37-109 (197)
169 2qen_A Walker-type ATPase; unk 77.9 14 0.00049 37.5 11.7 114 172-331 226-348 (350)
170 2fna_A Conserved hypothetical 67.8 29 0.00098 35.2 11.1 111 175-330 233-355 (357)
171 1w5s_A Origin recognition comp 47.3 21 0.00072 37.3 5.8 68 228-310 298-372 (412)
172 1hqc_A RUVB; extended AAA-ATPa 46.5 12 0.00039 38.0 3.4 75 225-308 234-324 (324)
173 2bnl_A Modulator protein RSBR; 25.5 72 0.0025 28.0 4.4 67 117-187 13-82 (136)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=227.22 Aligned_cols=296 Identities=18% Similarity=0.148 Sum_probs=211.8
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~ 437 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++. ..|..|.++++|++|+|++|. +..+|. .+.+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 102 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA---------VEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTG 102 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE---------eChhhhhCCccCCEEECCCCc-CCccCcccccC
Confidence 56666666777777777789999999999999997763 236778999999999999984 667765 4789
Q ss_pred cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK 517 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~ 517 (704)
+++|++|+|++|......|..+..+++|++|++++|.+....|..+..+++|++| ++++|.+....+.....++
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL------TLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE------EEESCCCSSCCHHHHTTCT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE------ECCCCcCcccChhHhcccC
Confidence 9999999999987766777889999999999999999877777789999999999 5888888877665333899
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccce
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLL 596 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L 596 (704)
+|+.|++++|.+....+ ..+..+++|+.|++++|......+........+..+. +..+ ....+|. .+..+ ++|
T Consensus 177 ~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-l~~n-~l~~~~~~~~~~l-~~L 250 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS-ITHC-NLTAVPYLAVRHL-VYL 250 (477)
T ss_dssp TCCEEEEESCCCCEECT---TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE-EESS-CCCSCCHHHHTTC-TTC
T ss_pred CCcEEeCCCCcCcEeCh---hhcccCcccceeeCCCCccccccCcccccCccccEEE-CcCC-cccccCHHHhcCc-ccc
Confidence 99999999998765333 4688899999999999876554443322222111111 1111 1223332 33444 477
Q ss_pred eEEEEEcCCCCCCcc-cCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391 597 EKLDLHCFPLESLPN-WLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674 (704)
Q Consensus 597 ~~L~Ls~~~l~~lP~-~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~ 674 (704)
+.|+|++|.+..++. .+..+ +|+.|+|++|.+..++...+..+++|+.|+|+++..-.+....+ ..+++|+.|++.+
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEECCS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc-CCCcccCEEEccC
Confidence 777777777766654 34444 77777777777777666666667778888877764332222222 4567888888888
Q ss_pred CCC
Q 041391 675 CPM 677 (704)
Q Consensus 675 C~~ 677 (704)
+|-
T Consensus 330 N~l 332 (477)
T 2id5_A 330 NPL 332 (477)
T ss_dssp SCE
T ss_pred CCc
Confidence 754
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=9.5e-24 Score=244.69 Aligned_cols=259 Identities=16% Similarity=0.195 Sum_probs=137.6
Q ss_pred hcCCCCCccEEEcCCCCCccc----chhh----hccchhhHhcc--CCcccceeeeeccCCCCCCchhhhccccCcEEee
Q 041391 377 WFSNLKKVKVLHLGRWKNSAK----HFVE----VQGSKFLKELK--NMSALRLLSLQGVYGIREIPSSIANLSNLRVLDL 446 (704)
Q Consensus 377 ~f~~l~~Lr~L~L~~n~l~~~----~~~~----~~~~~lp~~l~--~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdL 446 (704)
.|.++++|++|+|++|.+++. .|+. +....+|..++ ++++|++|+|++|...+.+|..++++++|++|+|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 466667777777777665531 0000 00001566666 6777777777776666666666667777777777
Q ss_pred eccc-CCC-cCCcccccc------CCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 447 RCCY-YLT-KLPKGLDSL------KKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 447 s~c~-~l~-~lP~~i~~L------~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
++|. ..+ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++| ++++|.+.+.++.+. .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L------~L~~N~l~g~ip~~~-~l 352 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML------ECLYNQLEGKLPAFG-SE 352 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE------ECCSCCCEEECCCCE-EE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE------eCcCCcCccchhhhC-CC
Confidence 7665 444 566666665 66777777766655 6666 56666666666 466666664444555 66
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCC-ccEEEEEecCCCCCCCCcccccc--cchhhHhhHhhhcCCCCCCccc---
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKN-LLKLKIAWGAGYSKCRNQEGNNE--HNKKQEDEAETQGKGGLDGTFG--- 590 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~~l~~~~~--- 590 (704)
++|+.|++++|.+. .++..+..+++ |+.|++++|.+. ..+....... .+..+ .+..+...+.+|..+.
T Consensus 353 ~~L~~L~L~~N~l~----~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 353 IKLASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI-DFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEESEEECCSSEEE----ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE-ECCSSCTTTTTTCSSCTTC
T ss_pred CCCCEEECCCCccc----cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE-ECcCCcCCCcchhhhcccc
Confidence 66666666666554 22244566666 666666666654 3332211111 11111 1122222333333333
Q ss_pred ----ccccceeEEEEEcCCCCCCcccCCC-C-CeeEEEEEcCCCCCcCCCccCCCC-------CcCEEecCCC
Q 041391 591 ----QKDRLLEKLDLHCFPLESLPNWLSG-L-NLRKLYIRGGQLRSLQGDTHKKYS-------TVKVLRLRYL 650 (704)
Q Consensus 591 ----~lp~~L~~L~Ls~~~l~~lP~~l~~-l-~L~~L~Ls~n~l~~lp~~~~~~f~-------~L~~L~L~~l 650 (704)
.+ .+|+.|+|++|.+..+|..+.. + +|++|+|++|.+..+|........ +|+.|+|+++
T Consensus 427 ~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 427 PTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred cccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC
Confidence 22 2555555555555555544322 2 555555555555555544333222 5555555543
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=9e-23 Score=226.50 Aligned_cols=308 Identities=17% Similarity=0.120 Sum_probs=180.8
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
.+++.+....+.+....+..|.++++|++|++++|.+... --|..|..+++|++|+|++|......|..+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--------i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--------IRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE--------ECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce--------ECcccccccccCCEEeCCCCccCccChhhccC
Confidence 3556666666666665566677888888888887755310 11355777778888888877544444667777
Q ss_pred cccCcEEeeecccCCCcCCcc--ccccCCCcEEEccCcccccccCcc-CCCCCCcceecccccccCCCCCCccchhh-HH
Q 041391 438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMPKE-LSSLSELQVLKGFLVTDAKPNDKICTLED-LG 513 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~--i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~ 513 (704)
+++|++|+|++|...+.+|.. +..+++|++|++++|.+.+..|.. ++.+++|++| ++++|.+.+..+. +.
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL------DLTFNKVKSICEEDLL 175 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE------ECTTCCBSCCCTTTSG
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE------eCCCCcccccChhhhh
Confidence 778888888777555544444 777777888888777766655655 6777777777 4666665544321 11
Q ss_pred ---------------------------------hCCCCCcEEEEEeeCCCCchhhHHHHhccC-----------------
Q 041391 514 ---------------------------------NSLKELRKLSIYVNNNAIPIEKLSESLEKF----------------- 543 (704)
Q Consensus 514 ---------------------------------~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l----------------- 543 (704)
..+++|+.|++++|.+.+..+.........
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 033567788888777654433222111111
Q ss_pred -------------------CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcC
Q 041391 544 -------------------KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCF 604 (704)
Q Consensus 544 -------------------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~ 604 (704)
++|+.|++++|.+....+........+..+ .+..+...+..|..+..+ ++|++|+|++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N 333 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL-TLAQNEINKIDDNAFWGL-THLLKLNLSQN 333 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE-ECTTSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE-ECCCCcccccChhHhcCc-ccCCEEECCCC
Confidence 345555555555433222221111111111 111222222234445555 37777777777
Q ss_pred CCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391 605 PLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 605 ~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP 682 (704)
.+..+ |.++..+ +|++|+|++|.+..++...+..+++|+.|+|+++..-.+... ....+++|+.|++.+|+--..+|
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence 77655 4455556 777777777777766555556677778887777543322111 11467788888888876655555
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=6.9e-23 Score=237.46 Aligned_cols=301 Identities=13% Similarity=0.115 Sum_probs=213.6
Q ss_pred ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCC-CcccchhhhccchhhHhccCC------cccceeeeeccCCC
Q 041391 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWK-NSAKHFVEVQGSKFLKELKNM------SALRLLSLQGVYGI 428 (704)
Q Consensus 356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~-l~~~~~~~~~~~~lp~~l~~L------~~Lr~L~Ls~n~~l 428 (704)
....++.+....+.+....+..|.++++|++|++++|. +++ ..+|..++.+ ++|++|+|++|. +
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~--------~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG--------EQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH--------HHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc--------ccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 44566666666666555556678999999999999996 542 1467777665 899999999985 5
Q ss_pred CCCch--hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCC-cceecccccccCCCCCC
Q 041391 429 REIPS--SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE-LQVLKGFLVTDAKPNDK 505 (704)
Q Consensus 429 ~~lP~--~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~-L~~L~~~~~~~ls~n~l 505 (704)
..+|. .++++++|++|++++|...+.+| .++.+++|++|++++|.+. .+|..++.+++ |++| ++++|.+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L------~Ls~N~l 389 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL------SFAHNKL 389 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE------ECCSSCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE------EccCCcC
Confidence 58888 89999999999999987666888 8888999999999999866 78888888888 9999 5888887
Q ss_pred ccchhhHHhCC--CCCcEEEEEeeCCCCchhhHHHHhc-------cCCCccEEEEEecCCCCCCCCcccc-cccchhhHh
Q 041391 506 ICTLEDLGNSL--KELRKLSIYVNNNAIPIEKLSESLE-------KFKNLLKLKIAWGAGYSKCRNQEGN-NEHNKKQED 575 (704)
Q Consensus 506 ~~~~~~l~~~L--~~L~~L~L~~n~~~~~~~~l~~~L~-------~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~~l~~ 575 (704)
...+..+. .+ ++|+.|++++|.+.+..+ ..+. .+++|+.|++++|.+. ..+..... ...+..+ .
T Consensus 390 ~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p---~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L-~ 463 (636)
T 4eco_A 390 KYIPNIFD-AKSVSVMSAIDFSYNEIGSVDG---KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSI-N 463 (636)
T ss_dssp SSCCSCCC-TTCSSCEEEEECCSSCTTTTTT---CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEE-E
T ss_pred cccchhhh-hcccCccCEEECcCCcCCCcch---hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEE-E
Confidence 74444333 43 378888888888776544 3444 6678888888888866 33332221 1112111 1
Q ss_pred hHhhhcCCCCCCccccccc-------ceeEEEEEcCCCCCCcccCC--CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEE
Q 041391 576 EAETQGKGGLDGTFGQKDR-------LLEKLDLHCFPLESLPNWLS--GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645 (704)
Q Consensus 576 ~~~~~~~~~l~~~~~~lp~-------~L~~L~Ls~~~l~~lP~~l~--~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L 645 (704)
+..+.. ..+|........ +|+.|+|++|.+..+|..+. .+ +|+.|+|++|++..+|.... .+++|+.|
T Consensus 464 Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L 541 (636)
T 4eco_A 464 LMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGF 541 (636)
T ss_dssp CCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCSSCCEE
T ss_pred CCCCCC-CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh-cCCCCCEE
Confidence 122222 245554433222 89999999999999998886 66 99999999999988877655 48999999
Q ss_pred ecCCCccccccccccc-------CcCCCccEEeeecCCCCCCCCCC
Q 041391 646 RLRYLNELNVNWRELQ-------ALFPDLEYLEKFNCPMISFFPCD 684 (704)
Q Consensus 646 ~L~~l~~L~l~~~~l~-------~~~p~L~~L~i~~C~~L~~lP~~ 684 (704)
+|+++..+ +.|.+. ..+++|+.|++.+| .++.+|..
T Consensus 542 ~Ls~N~~l--s~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~ 584 (636)
T 4eco_A 542 GIRNQRDA--QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK 584 (636)
T ss_dssp ECCSCBCT--TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred ECCCCccc--ccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence 99765422 122111 45788889998888 45888764
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.6e-23 Score=219.67 Aligned_cols=255 Identities=19% Similarity=0.182 Sum_probs=153.8
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeec-cCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQG-VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~-n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
.+++.|+|++|.+++. ..+|..|..+++|++|+|++ |...+.+|..++++++|++|+|++|...+.+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~-------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSC-------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCC-------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 4566777777655420 03456667777777777774 545556666677777777777777655556676677
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-hhHHhCCC-CCcEEEEEeeCCCCchhhHHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-EDLGNSLK-ELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~~~L~-~L~~L~L~~n~~~~~~~~l~~ 538 (704)
++++|++|++++|.+.+.+|..++.+++|++| ++++|.+.+.+ ..+. .++ +|+.|++++|.+.+.++ .
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L------~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~---~ 192 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGI------TFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIP---P 192 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEE------ECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECC---G
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeE------ECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCC---h
Confidence 77777777777776666666667777777777 46666666433 3455 665 67777777766554333 3
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-N 617 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~ 617 (704)
.+..++ |+.|++++|.+.. ..|..+..+ ++|+.|+|++|.+...+..+..+ +
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~-------------------------~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEG-------------------------DASVLFGSD-KNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEE-------------------------CCGGGCCTT-SCCSEEECCSSEECCBGGGCCCCTT
T ss_pred HHhCCc-ccEEECcCCcccC-------------------------cCCHHHhcC-CCCCEEECCCCceeeecCcccccCC
Confidence 455554 7777776665321 123334444 36777777777665544445555 7
Q ss_pred eeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 618 LRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 618 L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
|++|+|++|.+. .+|. ....+++|+.|+|+++..-. ..... +.+++|+.|++.+++.+...|.
T Consensus 246 L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~-~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEE-ECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred CCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccc-cCCCC-ccccccChHHhcCCCCccCCCC
Confidence 777777777765 3333 23446677777776654321 11111 4567777777777776655543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=8e-23 Score=242.15 Aligned_cols=281 Identities=20% Similarity=0.151 Sum_probs=201.3
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
+++|++|++++|.+++ .+|..++.+++|++|+|++|...+.+|..++++++|++|++++|...+.+|..++
T Consensus 393 ~~~L~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG---------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp TCCCCEEECCSSEEEE---------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cCCccEEECCCCcccc---------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 5667777777775542 4678889999999999999877678898899999999999999988888999999
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSES 539 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~~ 539 (704)
.+++|++|++++|.+.+.+|..++.+++|++| ++++|.+.+.++ .+. .+++|+.|++++|.+.+.++ ..
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L------~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p---~~ 533 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWI------SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIP---AE 533 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECC---GG
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEE------EccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCC---HH
Confidence 99999999999999888899999999999999 599999887665 455 89999999999998876555 67
Q ss_pred hccCCCccEEEEEecCCCCCCCCcccccccchhh-------------------------------------H--------
Q 041391 540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQ-------------------------------------E-------- 574 (704)
Q Consensus 540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l-------------------------------------~-------- 574 (704)
+..+++|+.|++++|.+...+|............ .
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 8899999999999998765555443221110000 0
Q ss_pred hhHhhhcCCCCCCcccccccceeEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCc
Q 041391 575 DEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 575 ~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
....+...+.+|..+..+ ++|+.|+|++|.+. .+|..+..+ +|+.|+|++|.+. .+|.. ...+++|+.|+|+++.
T Consensus 614 ~l~~~~~~g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNK 691 (768)
T ss_dssp CTTSCEEEEECCCSCSSS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC
T ss_pred ccccceecccCchhhhcc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCc
Confidence 000112223344455555 47888888888774 677777777 8888888888886 34443 3457788888887754
Q ss_pred ccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 652 ELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 652 ~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
.-. ........+++|+.|++++|+--..+|.
T Consensus 692 l~g-~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 692 LDG-RIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CEE-CCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ccC-cCChHHhCCCCCCEEECcCCcccccCCC
Confidence 322 1111114566777777777643334443
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=9.9e-23 Score=241.56 Aligned_cols=170 Identities=20% Similarity=0.260 Sum_probs=120.2
Q ss_pred hhhcCCCCCccEEEcCCCCCcccc----hh----hhccchhhHhcc--CCcccceeeeeccCCCCCCchhhhccccCcEE
Q 041391 375 SKWFSNLKKVKVLHLGRWKNSAKH----FV----EVQGSKFLKELK--NMSALRLLSLQGVYGIREIPSSIANLSNLRVL 444 (704)
Q Consensus 375 ~~~f~~l~~Lr~L~L~~n~l~~~~----~~----~~~~~~lp~~l~--~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~L 444 (704)
|..|.++++|++|+|++|.+++.. +. ......+|..++ ++++|++|+|++|...+.+|..+++|++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 345777888888888888776410 00 000012677766 88888888888887777888888888888888
Q ss_pred eeeccc-CCC-cCCccccccC-------CCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhhHH
Q 041391 445 DLRCCY-YLT-KLPKGLDSLK-------KLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLEDLG 513 (704)
Q Consensus 445 dLs~c~-~l~-~lP~~i~~L~-------~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~ 513 (704)
+|++|. ..+ .+|..++.++ +|++|++++|.+. .+|. .++++++|++| ++++|.+. .++.+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L------~Ls~N~l~-~lp~~~ 592 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL------DCVHNKVR-HLEAFG 592 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE------ECTTSCCC-BCCCCC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE------ECCCCCcc-cchhhc
Confidence 888876 444 5777776665 8888888888766 7777 77888888888 57777776 445666
Q ss_pred hCCCCCcEEEEEeeCCCCchhhHHHHhccCCC-ccEEEEEecCCC
Q 041391 514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKN-LLKLKIAWGAGY 557 (704)
Q Consensus 514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~-L~~L~Ls~n~l~ 557 (704)
.+++|+.|++++|.+. .++ ..+..+++ |+.|+|++|.+.
T Consensus 593 -~L~~L~~L~Ls~N~l~-~lp---~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 593 -TNVKLTDLKLDYNQIE-EIP---EDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp -TTSEESEEECCSSCCS-CCC---TTSCEECTTCCEEECCSSCCC
T ss_pred -CCCcceEEECcCCccc-cch---HHHhhccccCCEEECcCCCCC
Confidence 7788888888887765 333 45777777 888888877765
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=3.2e-23 Score=219.00 Aligned_cols=248 Identities=19% Similarity=0.164 Sum_probs=203.8
Q ss_pred ceeeeeecccCCCCC--cchhhcCCCCCccEEEcCC-CCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh
Q 041391 358 LTVSALVNVSEQFPD--FQSKWFSNLKKVKVLHLGR-WKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS 434 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~--~~~~~f~~l~~Lr~L~L~~-n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~ 434 (704)
.+++.+......+.. ..+..|.++++|++|++++ |.+++ .+|..|+.+++|++|+|++|...+.+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~---------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG---------PIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES---------CCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc---------cCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 356666666666655 4566799999999999995 76542 56888999999999999999665689999
Q ss_pred hhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC-CcceecccccccCCCCCCccchhhHH
Q 041391 435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS-ELQVLKGFLVTDAKPNDKICTLEDLG 513 (704)
Q Consensus 435 l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~-~L~~L~~~~~~~ls~n~l~~~~~~l~ 513 (704)
+.++++|++|+|++|...+.+|..+..+++|++|++++|.+.+.+|..++.++ +|++| ++++|.+.+.++...
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L------~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM------TISRNRLTGKIPPTF 194 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE------ECCSSEEEEECCGGG
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE------ECcCCeeeccCChHH
Confidence 99999999999999987779999999999999999999998889999999998 99999 699999886655433
Q ss_pred hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391 514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593 (704)
Q Consensus 514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp 593 (704)
..++ |+.|++++|.+.+..+ ..+..+++|+.|++++|.+... + +.+..+
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~-------------------------~-~~~~~l- 243 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDAS---VLFGSDKNTQKIHLAKNSLAFD-------------------------L-GKVGLS- 243 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCG---GGCCTTSCCSEEECCSSEECCB-------------------------G-GGCCCC-
T ss_pred hCCc-ccEEECcCCcccCcCC---HHHhcCCCCCEEECCCCceeee-------------------------c-Cccccc-
Confidence 2776 9999999998875444 5788999999999999985321 1 123334
Q ss_pred cceeEEEEEcCCCC-CCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCccc
Q 041391 594 RLLEKLDLHCFPLE-SLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNEL 653 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~-~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L 653 (704)
++|++|+|++|.+. .+|.++..+ +|++|+|++|++. .+|.. ..+++|+.|.+.+++.+
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEE
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCc
Confidence 59999999999986 889999888 9999999999996 55554 55888888888887655
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.4e-22 Score=238.22 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=198.2
Q ss_pred ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCC-CcccchhhhccchhhHhccCCc-------ccceeeeeccCC
Q 041391 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWK-NSAKHFVEVQGSKFLKELKNMS-------ALRLLSLQGVYG 427 (704)
Q Consensus 356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~-l~~~~~~~~~~~~lp~~l~~L~-------~Lr~L~Ls~n~~ 427 (704)
...+++.+....+.+....|..|.++++|++|+|++|. +++ ..+|..++.+. +|++|+|++|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg--------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA--------AQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH--------HHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc--------ccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 34456666655555555555678888888888888886 542 13455554444 88888888874
Q ss_pred CCCCch--hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCC-cceecccccccCCCCC
Q 041391 428 IREIPS--SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSE-LQVLKGFLVTDAKPND 504 (704)
Q Consensus 428 l~~lP~--~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~-L~~L~~~~~~~ls~n~ 504 (704)
+..+|. .++++++|++|+|++|... .+| .++.+++|++|++++|.+. .+|..+..+++ |++| ++++|.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L------~Ls~N~ 630 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL------GFSHNK 630 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE------ECCSSC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE------ECcCCC
Confidence 447887 7888888888888887544 777 7888888888888888765 77777888887 8888 577777
Q ss_pred CccchhhHHhCCC--CCcEEEEEeeCCCCchhhHHHHhc--cCCCccEEEEEecCCCCCCCCccc-ccccchhhHhhHhh
Q 041391 505 KICTLEDLGNSLK--ELRKLSIYVNNNAIPIEKLSESLE--KFKNLLKLKIAWGAGYSKCRNQEG-NNEHNKKQEDEAET 579 (704)
Q Consensus 505 l~~~~~~l~~~L~--~L~~L~L~~n~~~~~~~~l~~~L~--~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~~l~~~~~~ 579 (704)
+...+..+. .+. +|+.|++++|.+.+.++.++..+. .+++|+.|+|++|.+. ..+.... ....+..+ .+..+
T Consensus 631 L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L-~Ls~N 707 (876)
T 4ecn_A 631 LKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI-ILSNN 707 (876)
T ss_dssp CCSCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE-ECCSC
T ss_pred CCcCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE-ECCCC
Confidence 664333333 333 377777777777654443332233 2346777777777765 2222211 11111111 11112
Q ss_pred hcCCCCCCcccccc-------cceeEEEEEcCCCCCCcccCC--CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391 580 QGKGGLDGTFGQKD-------RLLEKLDLHCFPLESLPNWLS--GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649 (704)
Q Consensus 580 ~~~~~l~~~~~~lp-------~~L~~L~Ls~~~l~~lP~~l~--~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~ 649 (704)
....+|..+.... ++|+.|+|++|.+..+|..+. .+ +|+.|+|++|.+..+|.... .+++|+.|+|++
T Consensus 708 -~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 708 -LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRH 785 (876)
T ss_dssp -CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCTTCCEEECCC
T ss_pred -cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh-cCCCCCEEECCC
Confidence 2224555443322 289999999999999998886 66 99999999999988876655 588999999987
Q ss_pred Cccccccccccc-------CcCCCccEEeeecCCCCCCCCCC
Q 041391 650 LNELNVNWRELQ-------ALFPDLEYLEKFNCPMISFFPCD 684 (704)
Q Consensus 650 l~~L~l~~~~l~-------~~~p~L~~L~i~~C~~L~~lP~~ 684 (704)
++.+ +.+.+. ..+++|+.|++.+| .+..+|..
T Consensus 786 N~~l--s~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~ 824 (876)
T 4ecn_A 786 QRDA--EGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK 824 (876)
T ss_dssp CBCT--TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred CCCc--ccccccccChHHHhcCCCCCEEECCCC-CCCccCHh
Confidence 5532 222221 45788999999988 45888874
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.3e-22 Score=238.14 Aligned_cols=280 Identities=20% Similarity=0.203 Sum_probs=216.2
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+....+..|.++++|++|++++|.+++ .+|..++.+++|++|+|++|...+.+|..++.+
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC---------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 45555554554444456678999999999999997753 467889999999999999998777899999999
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~ 517 (704)
++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..++.+++|++| ++++|.+.+.++ .+. .++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L------~L~~N~l~~~~p~~l~-~l~ 538 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL------KLSNNSFSGNIPAELG-DCR 538 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSCCEEECCGGGG-GCT
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE------ECCCCcccCcCCHHHc-CCC
Confidence 999999999998888999999999999999999999998999999999999999 699999987665 566 999
Q ss_pred CCcEEEEEeeCCCCchhhHHH-----------------------------------------------------------
Q 041391 518 ELRKLSIYVNNNAIPIEKLSE----------------------------------------------------------- 538 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~----------------------------------------------------------- 538 (704)
+|+.|++++|.+.+.+|....
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 999999999988765552111
Q ss_pred --------HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCC-CC
Q 041391 539 --------SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLE-SL 609 (704)
Q Consensus 539 --------~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~-~l 609 (704)
.+..+++|+.|+|++|. ..+.+|..+..+ ++|+.|+|++|.+. .+
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~-------------------------l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNM-------------------------LSGYIPKEIGSM-PYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSC-------------------------CBSCCCGGGGGC-TTCCEEECCSSCCCSCC
T ss_pred eecccCchhhhccccccEEECcCCc-------------------------ccccCCHHHhcc-ccCCEEeCcCCccCCCC
Confidence 11223344444444444 455678888888 49999999999986 89
Q ss_pred cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391 610 PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 610 P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP 682 (704)
|..+..+ +|+.|+|++|++..........+++|+.|+|++++--. .-.-.+.|..+..+.+.+||.|...|
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG--PIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE--ECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc--cCCCchhhccCCHHHhcCCchhcCCC
Confidence 9999999 99999999999964433445568899999998865321 00111345556666677877665544
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=4.2e-22 Score=229.44 Aligned_cols=303 Identities=16% Similarity=0.098 Sum_probs=215.1
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+.+..|..+++|++|++++|.++ .+|..+..+++|++|++++|......|..+.++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS----------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS----------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC----------CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 5667777777777777778899999999999999765 567788899999999999985444446678899
Q ss_pred ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCccccccc--CccCCCCCCcceecccccccCCCCCCccchhhHHhC
Q 041391 439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYM--PKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNS 515 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~l--P~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~ 515 (704)
++|++|++++|...+.+|.. +..+++|++|++++|.+.+.. |..++.+++|++| ++++|.+....+.....
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL------NLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE------ECCSCSCEEECTTTTTT
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE------ECCCCcCCcCCHHHhcC
Confidence 99999999998776677655 888999999999999876554 6678889999999 58888877665543338
Q ss_pred CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC---CCCCccccc
Q 041391 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG---GLDGTFGQK 592 (704)
Q Consensus 516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~l 592 (704)
+++|+.|++++|.+.+..+. ..+..+++|+.|++++|.+....+........+..+. +..+...+ ..+..+..+
T Consensus 399 l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQ--SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN-LQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp CTTCSEEECTTCCEECCTTC--CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE-CTTCBCGGGEECSSCGGGGC
T ss_pred CccCCeEECCCCcCCCcccc--hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE-CCCCCCCccccccchhhccC
Confidence 88999999988887644321 3477888899999988886544333222222222221 11111111 112345555
Q ss_pred ccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEE
Q 041391 593 DRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYL 670 (704)
Q Consensus 593 p~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L 670 (704)
++|+.|+|++|.+..+ |.++..+ +|++|+|++|++..++......++.| .|+|+++....+....+ ..+++|+.|
T Consensus 476 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L 552 (606)
T 3t6q_A 476 -GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PILSQQRTI 552 (606)
T ss_dssp -TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH-HHHHTSSEE
T ss_pred -CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc-ccCCCCCEE
Confidence 4889999998888766 4666667 89999999998877766666677888 88888865443222112 457889999
Q ss_pred eeecCCCCCCCCC
Q 041391 671 EKFNCPMISFFPC 683 (704)
Q Consensus 671 ~i~~C~~L~~lP~ 683 (704)
++.+||-...++.
T Consensus 553 ~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 553 NLRQNPLDCTCSN 565 (606)
T ss_dssp ECTTCCEECSGGG
T ss_pred eCCCCCccccCCc
Confidence 9999976555543
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.5e-21 Score=210.69 Aligned_cols=288 Identities=16% Similarity=0.089 Sum_probs=162.0
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+......+..+.+..|..+++|++|++++|.++.+ .+..|..+++|++|+|++|......|..++++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCccccc---------ChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 444444444444455555667777788888877766421 13467777777788887775433334556777
Q ss_pred ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~ 517 (704)
++|++|+|++| .+..+|.. +.++++|++|++++|.+....|..++.+++|++| ++++|.+.... +. .++
T Consensus 117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~--~~-~l~ 186 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL------QLSSNRLTHVD--LS-LIP 186 (390)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE------ECCSSCCSBCC--GG-GCT
T ss_pred CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE------ECCCCcCCccc--cc-ccc
Confidence 77788877776 44566655 4677777788777777665555567777777777 46666655432 22 334
Q ss_pred CCcEEEEEeeCCCCch---------------hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcC
Q 041391 518 ELRKLSIYVNNNAIPI---------------EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGK 582 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~---------------~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 582 (704)
+|+.|++++|.+.... ..++ ....++|+.|++++|.+... +.......+..+ .+..+...
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~Ls~n~l~ 261 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV-DLSYNELE 261 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCC
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCccc--HHHcCCCCccEE-ECCCCcCC
Confidence 4444444333322100 0000 01123455555555544321 000000000000 01111111
Q ss_pred CCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc
Q 041391 583 GGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ 661 (704)
Q Consensus 583 ~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~ 661 (704)
+..|..+..+ ++|+.|+|++|.+..+|..+..+ +|++|+|++|++..+|... ..+++|+.|+|+++..-.+. .
T Consensus 262 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~----~ 335 (390)
T 3o6n_A 262 KIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK----L 335 (390)
T ss_dssp EEESGGGTTC-SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC----C
T ss_pred CcChhHcccc-ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC----c
Confidence 1223445455 37888888888777777666656 7888888888777776553 34677888888776543321 2
Q ss_pred CcCCCccEEeeecCC
Q 041391 662 ALFPDLEYLEKFNCP 676 (704)
Q Consensus 662 ~~~p~L~~L~i~~C~ 676 (704)
..+++|+.|++.+|+
T Consensus 336 ~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 336 STHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhhccCCEEEcCCCC
Confidence 467788888888764
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.6e-21 Score=224.32 Aligned_cols=282 Identities=16% Similarity=0.102 Sum_probs=164.3
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+++..|..+++|++|+|++|.++.+ .|..|+.+++|++|+|++|......|..++++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI---------DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC---------ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 344444444445555556677788888888888876532 23467788888888888875444444556888
Q ss_pred ccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~ 517 (704)
++|++|+|++| .+..+|.. ++++++|++|++++|.+.+..|..++.+++|++| ++++|.+.+.. +. .++
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~--~~-~l~ 192 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL------QLSSNRLTHVD--LS-LIP 192 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE------ECTTSCCSBCC--GG-GCT
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE------ECcCCCCCCcC--hh-hhh
Confidence 88888888887 44456555 4788888888888888776666678888888888 47777766542 23 445
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccC---------------------CCccEEEEEecCCCCCCCCcccccccchhhHhh
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKF---------------------KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDE 576 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l---------------------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~ 576 (704)
+|+.|++++|.+.+ +... ++|+.|+|++|.+... ........+..+ .+
T Consensus 193 ~L~~L~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L-~L 261 (597)
T 3oja_B 193 SLFHANVSYNLLST--------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEV-DL 261 (597)
T ss_dssp TCSEEECCSSCCSE--------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEE-EC
T ss_pred hhhhhhcccCcccc--------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEE-EC
Confidence 55555555554331 1111 2333333333332210 000000000000 01
Q ss_pred HhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccc
Q 041391 577 AETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNV 655 (704)
Q Consensus 577 ~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l 655 (704)
..+...+..|..+..+ ++|+.|+|++|.+..+|..+..+ +|+.|+|++|.+..+|... ..+++|+.|+|+++....+
T Consensus 262 s~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 262 SYNELEKIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CSSCCCEEESGGGTTC-SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCC
T ss_pred CCCccCCCCHHHhcCc-cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCc
Confidence 1111112234444455 36777777777776666666555 7777777777776666544 3467777777776653322
Q ss_pred ccccccCcCCCccEEeeecCC
Q 041391 656 NWRELQALFPDLEYLEKFNCP 676 (704)
Q Consensus 656 ~~~~l~~~~p~L~~L~i~~C~ 676 (704)
. ...+++|+.|++.+|+
T Consensus 340 ~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 K----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C----CCTTCCCSEEECCSSC
T ss_pred C----hhhcCCCCEEEeeCCC
Confidence 1 2456777777777765
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=6.6e-21 Score=202.51 Aligned_cols=266 Identities=15% Similarity=0.133 Sum_probs=167.8
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++. ..|..|..+++|++|+|++| .++.+|..+.
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-- 120 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---------ISPGAFAPLVKLERLYLSKN-QLKELPEKMP-- 120 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---------BCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---------eCHHHhcCCCCCCEEECCCC-cCCccChhhc--
Confidence 34455555555655555567777777777777776652 12566777777777777776 4566666554
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCccccc--ccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIE--YMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~--~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
++|++|++++|......+..+.++++|++|++++|.+.. ..+..+..+++|++| ++++|.+...+..+.
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L------~l~~n~l~~l~~~~~--- 191 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI------RIADTNITTIPQGLP--- 191 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE------ECCSSCCCSCCSSCC---
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE------ECCCCccccCCcccc---
Confidence 677777777765444444456777777788777776532 445567777777777 477776665443332
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
++|+.|++++|.+....+ ..+..+++|+.|++++|.+... .+..+..+ ++|
T Consensus 192 ~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~~~l-~~L 242 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDA---ASLKGLNNLAKLGLSFNSISAV-------------------------DNGSLANT-PHL 242 (330)
T ss_dssp TTCSEEECTTSCCCEECT---GGGTTCTTCCEEECCSSCCCEE-------------------------CTTTGGGS-TTC
T ss_pred ccCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCcee-------------------------ChhhccCC-CCC
Confidence 677777777777654322 4567777788888877764321 12234444 478
Q ss_pred eEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccC------CCCCcCEEecCCCccccc--ccccccCcCCCc
Q 041391 597 EKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHK------KYSTVKVLRLRYLNELNV--NWRELQALFPDL 667 (704)
Q Consensus 597 ~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~------~f~~L~~L~L~~l~~L~l--~~~~l~~~~p~L 667 (704)
++|+|++|.+..+|.++..+ +|++|+|++|.++.++...+. .++.|+.|++.+++.... ....+ ..++.|
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f-~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVR 321 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG-TTCCCG
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc-ccccce
Confidence 88888888888888877777 888888888888777654432 235677777777654321 11111 334556
Q ss_pred cEEeeecC
Q 041391 668 EYLEKFNC 675 (704)
Q Consensus 668 ~~L~i~~C 675 (704)
+.+++.++
T Consensus 322 ~~l~L~~N 329 (330)
T 1xku_A 322 AAVQLGNY 329 (330)
T ss_dssp GGEEC---
T ss_pred eEEEeccc
Confidence 66666554
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=4.5e-21 Score=204.06 Aligned_cols=266 Identities=17% Similarity=0.149 Sum_probs=182.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+.+..|.++++|++|++++|.++. ..|..|..+++|++|+|++| .+..+|..+.
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-- 122 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK---------IHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-- 122 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE---------ECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc---------cCHhHhhCcCCCCEEECCCC-cCCccCcccc--
Confidence 45555555566666656678888888888888887653 22567788888888888887 4667776554
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccc--cccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI--EYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~--~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
++|++|++++|......+..+..+++|++|++++|.+. +..|..+..+ +|++| ++++|.+...+..+.
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L------~l~~n~l~~l~~~~~--- 192 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL------RISEAKLTGIPKDLP--- 192 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC------BCCSSBCSSCCSSSC---
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE------ECcCCCCCccCcccc---
Confidence 78888888887443333344778888888888888764 2455666666 78888 577777766544433
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
++|+.|++++|.+....+ ..+..+++|+.|++++|.+... .+..+..+ ++|
T Consensus 193 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N~l~~~-------------------------~~~~~~~l-~~L 243 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHNQIRMI-------------------------ENGSLSFL-PTL 243 (332)
T ss_dssp SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSSCCCCC-------------------------CTTGGGGC-TTC
T ss_pred CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCCcCCcC-------------------------ChhHhhCC-CCC
Confidence 678888888887765433 4577788888888888875331 22344555 489
Q ss_pred eEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCC------CCCcCEEecCCCcccc--cccccccCcCCCc
Q 041391 597 EKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKK------YSTVKVLRLRYLNELN--VNWRELQALFPDL 667 (704)
Q Consensus 597 ~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~------f~~L~~L~L~~l~~L~--l~~~~l~~~~p~L 667 (704)
+.|+|++|.+..+|.++..+ +|+.|+|++|.++.++...+.. ++.|+.|.+.+++... +....+ ..+++|
T Consensus 244 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-~~l~~L 322 (332)
T 2ft3_A 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDR 322 (332)
T ss_dssp CEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-TTBCCS
T ss_pred CEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc-cccchh
Confidence 99999999999999888777 9999999999998877654322 5678888888876442 111111 456778
Q ss_pred cEEeeecCC
Q 041391 668 EYLEKFNCP 676 (704)
Q Consensus 668 ~~L~i~~C~ 676 (704)
+.|++.+|.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 888887764
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.9e-21 Score=205.38 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=108.1
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i 459 (704)
....++.|+|++|.++ .+|..+..+++|++|+|++|. +..+|..++++++|++|+|++|.. ..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP----------QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCCS----------SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGG
T ss_pred cccceeEEEccCCCch----------hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHH
Confidence 3567899999999765 567778889999999999985 558998899999999999999854 5889999
Q ss_pred cccCCCcEEEccCcccccccCccCCC---------CCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391 460 DSLKKLTYLDISECYLIEYMPKELSS---------LSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~---------L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~ 530 (704)
+++++|++|++++|...+.+|..++. +++|++| ++++|.+...+..+. .+++|+.|++++|.+.
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L------~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL------RLEWTGIRSLPASIA-NLQNLKSLKIRNSPLS 219 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE------EEEEECCCCCCGGGG-GCTTCCEEEEESSCCC
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEE------ECcCCCcCcchHhhc-CCCCCCEEEccCCCCC
Confidence 99999999999998888888876654 5555555 345555443333444 5555555555555544
Q ss_pred CchhhHHHHhccCCCccEEEEEecC
Q 041391 531 IPIEKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 531 ~~~~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
+. + ..+..+++|+.|++++|.
T Consensus 220 ~l-~---~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 220 AL-G---PAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CC-C---GGGGGCTTCCEEECTTCT
T ss_pred cC-c---hhhccCCCCCEEECcCCc
Confidence 21 1 234555555555555544
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=213.33 Aligned_cols=273 Identities=17% Similarity=0.097 Sum_probs=155.1
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhh
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIA 436 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~ 436 (704)
.+++.+....+.+..+.+..|.++++|++|+|++|.++. +| ..|.++++|++|+|++|......|..+.
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL----------IPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS----------CCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc----------cCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 345555555555555555566777777777777776542 22 2356666666777666644444455566
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhC
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNS 515 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~ 515 (704)
++++|++|+|++|......|..+..+++|++|++++|.+....+..+..+++|+.| ++++|.+....+ .+. .
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L------~l~~n~i~~~~~~~~~-~ 198 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL------RLRHLNINAIRDYSFK-R 198 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE------EEESCCCCEECTTCSC-S
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE------eCCCCcCcEeChhhcc-c
Confidence 66666666666664444445556666666666666666443333345566666666 355555544433 223 5
Q ss_pred CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccc
Q 041391 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL 595 (704)
Q Consensus 516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~ 595 (704)
+++|+.|++++|.....++ ..+....+|+.|++++|.+.............+..+ .+..+......+..+..+ ++
T Consensus 199 l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l-~~ 273 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMT---PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-NLSYNPISTIEGSMLHEL-LR 273 (477)
T ss_dssp CTTCCEEEEECCTTCCEEC---TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE-ECCSSCCCEECTTSCTTC-TT
T ss_pred CcccceeeCCCCccccccC---cccccCccccEEECcCCcccccCHHHhcCccccCee-ECCCCcCCccChhhcccc-cc
Confidence 5555555555554332222 112222344555554444331110000000001000 001111111122345555 48
Q ss_pred eeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391 596 LEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE 652 (704)
Q Consensus 596 L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~ 652 (704)
|+.|+|++|.+..+ |..+..+ +|+.|+|++|.+..++...+..+++|+.|+|.+++.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999998776 5667777 999999999999999988888899999999988763
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=215.80 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=77.2
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
.+++.+....+.+..+.+..|.++++|++|+|++|.++. ..|..|.++++|++|+|++| .+..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY---------LDISVFKFNQELEYLDLSHN-KLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE---------EEGGGGTTCTTCCEEECCSS-CCCEEECC--C
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC---------cChHHhhcccCCCEEecCCC-ceeecCcc--c
Confidence 355666666666666666778888888888888887653 22567778888888888887 45677765 7
Q ss_pred cccCcEEeeecccCCC-cCCccccccCCCcEEEccCccccc
Q 041391 438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIE 477 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~ 477 (704)
+++|++|+|++|...+ .+|..++++++|++|++++|.+.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 7888888888875544 467778888888888887776543
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=4.3e-20 Score=197.41 Aligned_cols=260 Identities=23% Similarity=0.254 Sum_probs=157.0
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+.+ |..+++|++|++++|.++. + +.+..+++|++|++++| .+..+|. +..+
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~----------~-~~~~~l~~L~~L~l~~n-~i~~~~~-~~~l 131 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD----------I-SALQNLTNLRELYLNED-NISDISP-LANL 131 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------C-GGGTTCTTCSEEECTTS-CCCCCGG-GTTC
T ss_pred CccEEEccCCccccchh--hhcCCcCCEEEccCCcccC----------c-hHHcCCCcCCEEECcCC-cccCchh-hccC
Confidence 44555444444444433 6666677777776665542 2 23666667777777765 3555555 6666
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE 518 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~ 518 (704)
++|++|++++|.....++ .+..+++|++|++++|.+.. ++. ++.+++|++| ++++|.+....+ +. .+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L------~l~~n~l~~~~~-~~-~l~~ 200 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSL------SLNYNQIEDISP-LA-SLTS 200 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEE------ECTTSCCCCCGG-GG-GCTT
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEE------EccCCccccccc-cc-CCCc
Confidence 777777777665544443 36666677777777666433 222 5566666666 466666544333 44 6667
Q ss_pred CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391 519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK 598 (704)
Q Consensus 519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~ 598 (704)
|+.|++++|.+....+ +..+++|+.|++++|.+.. ++. +..+ ++|++
T Consensus 201 L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~--------------------------~~~-~~~l-~~L~~ 247 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITD--------------------------LSP-LANL-SQLTW 247 (347)
T ss_dssp CCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC--------------------------CGG-GTTC-TTCCE
T ss_pred cceeecccCCCCCCch-----hhcCCcCCEEEccCCccCC--------------------------Ccc-hhcC-CCCCE
Confidence 7777777666553221 5666677777777666432 222 3344 47888
Q ss_pred EEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391 599 LDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM 677 (704)
Q Consensus 599 L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~ 677 (704)
|++++|.+..++ .+..+ +|++|++++|.+..++. ...+++|+.|+|+++.........+ ..+|+|+.|++.+|+
T Consensus 248 L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~- 322 (347)
T 4fmz_A 248 LEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNH- 322 (347)
T ss_dssp EECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSS-
T ss_pred EECCCCccCCCh-hHhcCCCcCEEEccCCccCCChh--hcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCc-
Confidence 888888777764 34555 88888888888777643 4457788888888775433211112 457888888888875
Q ss_pred CCCCC
Q 041391 678 ISFFP 682 (704)
Q Consensus 678 L~~lP 682 (704)
++.+|
T Consensus 323 l~~~~ 327 (347)
T 4fmz_A 323 ITDIR 327 (347)
T ss_dssp CCCCG
T ss_pred ccccc
Confidence 55544
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=5.7e-21 Score=217.21 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=78.3
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC-CCchhhh
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR-EIPSSIA 436 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~-~lP~~l~ 436 (704)
.+++.+....+.+....+..|.++++|++|++++|.++.. .|..|+.+++|++|+|++|.... ..|..++
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL---------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC---------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc---------CHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 3555555555555555555667777777777777765421 23446777777777777764322 2345567
Q ss_pred ccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCccee
Q 041391 437 NLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVL 492 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L 492 (704)
++++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.+++|++|
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 77777777777765455555 356677777777777777666666666665555555
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.9e-21 Score=206.74 Aligned_cols=224 Identities=22% Similarity=0.242 Sum_probs=184.1
Q ss_pred eeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccc
Q 041391 360 VSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLS 439 (704)
Q Consensus 360 lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~ 439 (704)
++.+....+.+..+ +..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|. +..+|..+++++
T Consensus 83 l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~----------~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 83 RVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM----------ELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp CCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC----------CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred eeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc----------chhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 34444444444433 234667999999999999775 567889999999999999984 669999999999
Q ss_pred cCcEEeeecccCCCcCCccccc---------cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh
Q 041391 440 NLRVLDLRCCYYLTKLPKGLDS---------LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE 510 (704)
Q Consensus 440 ~L~~LdLs~c~~l~~lP~~i~~---------L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~ 510 (704)
+|++|+|++|...+.+|..++. +++|++|++++|.+. .+|..++.+++|++| ++++|.+.+.++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L------~L~~N~l~~l~~ 223 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL------KIRNSPLSALGP 223 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE------EEESSCCCCCCG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE------EccCCCCCcCch
Confidence 9999999999999999988765 999999999999866 889999999999999 699999998878
Q ss_pred hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc
Q 041391 511 DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG 590 (704)
Q Consensus 511 ~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 590 (704)
.+. .+++|+.|++++|.+.+.++ ..+..+++|+.|+|++|.+. +.+|..+.
T Consensus 224 ~l~-~l~~L~~L~Ls~n~~~~~~p---~~~~~l~~L~~L~L~~n~~~-------------------------~~~p~~~~ 274 (328)
T 4fcg_A 224 AIH-HLPKLEELDLRGCTALRNYP---PIFGGRAPLKRLILKDCSNL-------------------------LTLPLDIH 274 (328)
T ss_dssp GGG-GCTTCCEEECTTCTTCCBCC---CCTTCCCCCCEEECTTCTTC-------------------------CBCCTTGG
T ss_pred hhc-cCCCCCEEECcCCcchhhhH---HHhcCCCCCCEEECCCCCch-------------------------hhcchhhh
Confidence 888 99999999999998876655 56888999999999988743 23566666
Q ss_pred ccccceeEEEEEcCC-CCCCcccCCCC-CeeEEEEEcCCCCCcC
Q 041391 591 QKDRLLEKLDLHCFP-LESLPNWLSGL-NLRKLYIRGGQLRSLQ 632 (704)
Q Consensus 591 ~lp~~L~~L~Ls~~~-l~~lP~~l~~l-~L~~L~Ls~n~l~~lp 632 (704)
.+ ++|+.|+|++|. .+.+|.++..+ +|+.+.+..+.+..++
T Consensus 275 ~l-~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 275 RL-TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp GC-TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred cC-CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 66 489999999866 47899999888 8999988877664443
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=7e-21 Score=227.81 Aligned_cols=295 Identities=19% Similarity=0.172 Sum_probs=175.5
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchh-hHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKF-LKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~l-p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
+++.+....+.+..+.+..|.++++|++|+|++|... ..+ |..|.++++|++|+|++|......|..|++
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 4555555556666555666778888888888777432 123 566778888888888887544445777778
Q ss_pred cccCcEEeeecccCCCcCCcc--ccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchh-hHH
Q 041391 438 LSNLRVLDLRCCYYLTKLPKG--LDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLE-DLG 513 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~--i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~ 513 (704)
+++|++|+|++|...+.+|.. ++++++|++|++++|.+.+..| ..++++++|++| ++++|.+....+ .+.
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L------~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI------DFSSNQIFLVCEHELE 169 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE------EEESSCCCCCCSGGGH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE------ECCCCcCCeeCHHHcc
Confidence 888888888877665555554 7778888888888877655443 457778888887 477776655432 333
Q ss_pred hCC--CCCcEEEEEeeCCCCchhhHHHHhccCC------CccEEEEEecCCCCCCCCcccccc-----------------
Q 041391 514 NSL--KELRKLSIYVNNNAIPIEKLSESLEKFK------NLLKLKIAWGAGYSKCRNQEGNNE----------------- 568 (704)
Q Consensus 514 ~~L--~~L~~L~L~~n~~~~~~~~l~~~L~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~----------------- 568 (704)
.+ ++|+.|+++.|.+.+..+ ..+..+. .|+.|++++|.+....+.......
T Consensus 170 -~l~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 170 -PLQGKTLSFFSLAANSLYSRVS---VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp -HHHHCSSCCCEECCSBSCCCCC---CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred -cccCCccceEECCCCccccccc---cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 44 677777777776654332 2233333 377888877755433222111100
Q ss_pred ---------------------cchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEc
Q 041391 569 ---------------------HNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRG 625 (704)
Q Consensus 569 ---------------------~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~ 625 (704)
.+..+ .+..+......+..+..+ ++|+.|+|++|.+..+ |..+..+ +|++|+|++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L-~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHL-DLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEE-ECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccCCCChhhhhccccCCccEE-ECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 00000 011111112223444455 4788888888877655 3455556 888888888
Q ss_pred CCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecC
Q 041391 626 GQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC 675 (704)
Q Consensus 626 n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C 675 (704)
|.+..++...+..+++|+.|+|+++..-.+....+ ..+++|+.|++.+|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCC
Confidence 88877766666667788888777653221111111 23455555555554
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=3.4e-21 Score=213.83 Aligned_cols=275 Identities=16% Similarity=0.143 Sum_probs=180.3
Q ss_pred cceeeeeecccCCCC-CcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-
Q 041391 357 LLTVSALVNVSEQFP-DFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS- 434 (704)
Q Consensus 357 ~~~lr~l~~~~~~~~-~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~- 434 (704)
..+++.+....+.+. .+.+..|.++++|++|+|++|.++. ..|..|+++++|++|+|++|...+..|..
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ---------LETGAFNGLANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE---------ECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCc---------cChhhccCcccCCEEeCCCCCCCccccCcc
Confidence 335555555555443 3334567888888888888886652 23566778888888888887544334544
Q ss_pred -hhccccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCC--------------------------
Q 041391 435 -IANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSL-------------------------- 486 (704)
Q Consensus 435 -l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L-------------------------- 486 (704)
+.++++|++|+|++|...+..|.. +.++++|++|++++|.+.+..|..+..+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~ 203 (455)
T 3v47_A 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203 (455)
T ss_dssp TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence 777888888888887655555655 6778888888888887666555544333
Q ss_pred --------CCcceecccccccCCCCCCccchhh-HHh--------------------------------------CCCCC
Q 041391 487 --------SELQVLKGFLVTDAKPNDKICTLED-LGN--------------------------------------SLKEL 519 (704)
Q Consensus 487 --------~~L~~L~~~~~~~ls~n~l~~~~~~-l~~--------------------------------------~L~~L 519 (704)
++|++| ++++|.+.+..+. +.. ..++|
T Consensus 204 ~~~~~~~~~~L~~L------~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 204 KCGNPFKNTSITTL------DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp HHCCTTTTCEEEEE------ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred ccccccccceeeeE------ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 567777 4666665543321 110 12467
Q ss_pred cEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEE
Q 041391 520 RKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKL 599 (704)
Q Consensus 520 ~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L 599 (704)
+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+........+..+ .+..+...+..+..+..+ ++|++|
T Consensus 278 ~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l-~~L~~L 352 (455)
T 3v47_A 278 KTCDLSKSKIFALLK---SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSIDSRMFENL-DKLEVL 352 (455)
T ss_dssp CEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECGGGGTTC-TTCCEE
T ss_pred eEEEecCccccccch---hhcccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcChhHhcCc-ccCCEE
Confidence 777777777654333 457777888888888887654333222222222222 112222222234455666 599999
Q ss_pred EEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 600 DLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 600 ~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
+|++|.+..+ |.++..+ +|++|+|++|+++.+|...+..+++|+.|+|++++
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 9999999877 6678778 99999999999999998887889999999998765
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.4e-20 Score=216.79 Aligned_cols=157 Identities=18% Similarity=0.085 Sum_probs=107.0
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++. ..|..|.++++|++|+|++|......|..++++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW---------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE---------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce---------eChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 45566666666666666677888888888888886653 235667788888888888875544556677888
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~ 517 (704)
++|++|++++|.....-|..++++++|++|++++|.+.+..+..+..+++|++| ++++|.+....+. +. .++
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~-~l~ 177 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL------DFQNNAIHYLSKEDMS-SLQ 177 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE------ECCSSCCCEECHHHHH-TTT
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE------EcccCcccccChhhhh-hhc
Confidence 888888888875444335667788888888888887655222334447788888 5777777666443 44 777
Q ss_pred CCc--EEEEEeeCCCC
Q 041391 518 ELR--KLSIYVNNNAI 531 (704)
Q Consensus 518 ~L~--~L~L~~n~~~~ 531 (704)
+|+ .|++++|.+.+
T Consensus 178 ~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAG 193 (606)
T ss_dssp TCCSEEEECTTCCCCE
T ss_pred ccceeEEecCCCccCc
Confidence 777 66777766543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=211.29 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=91.9
Q ss_pred CCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHh
Q 041391 500 AKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAE 578 (704)
Q Consensus 500 ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~ 578 (704)
+++|.+.+.+ ..+. .+++|+.|++++|.+.+ ++.++..+..+++|+.|++++|.+..
T Consensus 331 Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------- 388 (520)
T 2z7x_B 331 FSNNLLTDTVFENCG-HLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDISQNSVSY-------------------- 388 (520)
T ss_dssp CCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCB-HHHHHHHHTTCTTCCEEECCSSCCBC--------------------
T ss_pred eECCccChhhhhhhc-cCCCCCEEEccCCccCc-cccchHHHhhCCCCCEEECCCCcCCc--------------------
Confidence 4444444422 2333 55555555555555442 23334455555555555555555322
Q ss_pred hhcCCCCCCc-ccccccceeEEEEEcCCCC-CCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccc
Q 041391 579 TQGKGGLDGT-FGQKDRLLEKLDLHCFPLE-SLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVN 656 (704)
Q Consensus 579 ~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~-~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~ 656 (704)
.+|.. +..+ ++|+.|++++|.+. .+|..+. .+|+.|+|++|++..+|.... .+++|+.|+|+++..-.+.
T Consensus 389 -----~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 389 -----DEKKGDCSWT-KSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVP 460 (520)
T ss_dssp -----CGGGCSCCCC-TTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCC
T ss_pred -----ccccchhccC-ccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccC
Confidence 13332 3334 58999999998873 4454442 289999999999988887766 6899999999887543322
Q ss_pred cccccCcCCCccEEeeecCCCCCCCC
Q 041391 657 WRELQALFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 657 ~~~l~~~~p~L~~L~i~~C~~L~~lP 682 (704)
.. ....+++|+.|++.+|+--..++
T Consensus 461 ~~-~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 461 DG-IFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TT-TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HH-HhccCCcccEEECcCCCCcccCC
Confidence 21 12467889999999986544444
No 26
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=9e-22 Score=223.82 Aligned_cols=153 Identities=10% Similarity=0.091 Sum_probs=118.6
Q ss_pred hchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHH-----
Q 041391 149 IRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFM----- 223 (704)
Q Consensus 149 ~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~----- 223 (704)
-++|+||+++||+.. .++++++++++|+++|+|+|||+++ +|+.++.+ .|+.+.
T Consensus 296 ~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~---------------~g~~l~~~----~w~~~~~l~~~ 354 (549)
T 2a5y_B 296 DECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMM---------------FFKSCEPK----TFEKMAQLNNK 354 (549)
T ss_dssp HHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHH---------------HHTTCCSS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHH---------------HHHHhccc----hHHHHHHhHHH
Confidence 467999999999763 3578999999999999999999555 44444322 132221
Q ss_pred -------HHHHHHHHhhhhchhhhHHHHH-----------HhcccCCCCccChHHHHHHHHHC--CCCccchhhhhhccc
Q 041391 224 -------EMIINFRNKFRNLKNESKFCLW-----------CFTVFPNNAVVRKRLVENWLITE--DKNRAEENREEKNKA 283 (704)
Q Consensus 224 -------~i~~~L~lSYd~L~~~lK~cFL-----------y~a~Fp~d~~i~~~~Li~~Wiae--G~i~~~~~~~~~~~~ 283 (704)
++.++|++||++||.++|.||+ |||+||+|+.|+ |.+|+|+ ||+...
T Consensus 355 l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~--------- 421 (549)
T 2a5y_B 355 LESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSN--------- 421 (549)
T ss_dssp HHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--------------
T ss_pred hhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccC---------
Confidence 1445789999999999999999 999999999998 8999999 999543
Q ss_pred ccccCHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhcCCCcc
Q 041391 284 VEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPEDL 340 (704)
Q Consensus 284 ~~~~~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~~~e~~ 340 (704)
..+.+++++++ ||++|+++|||++...+ ...+|+|||+||++|+.++.+++.
T Consensus 422 ~~~~~~~~~~~-~l~~L~~rsLl~~~~~~----~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 422 EEEQLDDEVAD-RLKRLSKRGALLSGKRM----PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp --CCCTHHHHH-HHHHTTTBSSCSEEECS----SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCCHHHHHH-HHHHHHHcCCeeEecCC----CceEEEeChHHHHHHHHHHHHHHH
Confidence 12567888888 99999999999987643 346899999999999999987654
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9e-20 Score=209.94 Aligned_cols=268 Identities=16% Similarity=0.088 Sum_probs=145.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+.+..|.++++|++|++++|.++.+ .|..|.++++|++|+|++|......|..|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i---------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI---------EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc---------CHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 455555555555555555666667777777776655421 13456666666666666664333335666666
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCcc----------
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKIC---------- 507 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~---------- 507 (704)
++|++|+|++|......|..++++++|++|++++|.+.+ .+|..++++++|++| ++++|.+.+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L------~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV------DLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE------ECCSSCCCEECTTTTHHHH
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE------EccCCcceecChhhhhhhh
Confidence 666666666664433333556666666666666666543 456666666666666 355554443
Q ss_pred ------------------chhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391 508 ------------------TLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH 569 (704)
Q Consensus 508 ------------------~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 569 (704)
..+... ...+|+.|++++|.+.+ ...+..+.+++.|+.+.+..+.+.............
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~ 254 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSS--NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCH--HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGG
T ss_pred ccccccceeeccCCCcceeCcccc-cCceeeeeeccCCccch--hHHHHHhccccccccccccccccccCCcccccChHH
Confidence 333333 33356667777665542 233456777777777777655433211111000000
Q ss_pred chhhHh--------hHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCC
Q 041391 570 NKKQED--------EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYS 640 (704)
Q Consensus 570 ~~~l~~--------~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~ 640 (704)
...+.. ...+...+.+|. +..+ ++|+.|+++++.+..+| ++..+ +|+.|++++|.+..+|.. .++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l-~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~---~l~ 328 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCL-ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL---DLP 328 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGS-CGGG-TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC---CCS
T ss_pred hhhhhhccHhheeccccccccccccc-cccC-CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC---CCC
Confidence 000000 001111122222 3344 47777777777777776 55555 777777777777666632 456
Q ss_pred CcCEEecCCC
Q 041391 641 TVKVLRLRYL 650 (704)
Q Consensus 641 ~L~~L~L~~l 650 (704)
+|+.|++.++
T Consensus 329 ~L~~L~l~~n 338 (606)
T 3vq2_A 329 FLKSLTLTMN 338 (606)
T ss_dssp SCCEEEEESC
T ss_pred ccceeeccCC
Confidence 6666665554
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.1e-19 Score=194.18 Aligned_cols=258 Identities=17% Similarity=0.199 Sum_probs=204.8
Q ss_pred ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhh
Q 041391 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI 435 (704)
Q Consensus 356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l 435 (704)
....++.+....+.+..+ ..|..+++|++|++++|.++. ++. +..+++|++|++++|.....++. +
T Consensus 86 ~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~----------~~~-~~~l~~L~~L~l~~n~~~~~~~~-~ 151 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD----------ISP-LANLTKMYSLNLGANHNLSDLSP-L 151 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC----------CGG-GTTCTTCCEEECTTCTTCCCCGG-G
T ss_pred cCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC----------chh-hccCCceeEEECCCCCCcccccc-h
Confidence 344666666666666554 358999999999999998763 333 88999999999999977776666 9
Q ss_pred hccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhC
Q 041391 436 ANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNS 515 (704)
Q Consensus 436 ~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~ 515 (704)
..+++|++|++++|. ...++. +..+++|++|++++|.+. .++. +..+++|+.| ++++|.+....+ +. .
T Consensus 152 ~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L------~l~~n~l~~~~~-~~-~ 219 (347)
T 4fmz_A 152 SNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYF------TAYVNQITDITP-VA-N 219 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEE------ECCSSCCCCCGG-GG-G
T ss_pred hhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCcccee------ecccCCCCCCch-hh-c
Confidence 999999999999985 455544 889999999999999865 4444 7889999999 588888776555 66 8
Q ss_pred CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccc
Q 041391 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRL 595 (704)
Q Consensus 516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~ 595 (704)
+++|+.|++++|.+....+ +..+++|+.|++++|.+.. + ..+..+ ++
T Consensus 220 ~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~--------------------------~-~~~~~l-~~ 266 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISD--------------------------I-NAVKDL-TK 266 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC--------------------------C-GGGTTC-TT
T ss_pred CCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCCccCC--------------------------C-hhHhcC-CC
Confidence 9999999999998875322 8899999999999998543 1 123344 49
Q ss_pred eeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391 596 LEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674 (704)
Q Consensus 596 L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~ 674 (704)
|+.|++++|.+..+| ++..+ +|+.|+|++|.+...+......+++|+.|+|++++...+. . ...+++|+.|++.+
T Consensus 267 L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 267 LKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--P-LASLSKMDSADFAN 342 (347)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG--G-GGGCTTCSEESSSC
T ss_pred cCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc--C-hhhhhccceeehhh
Confidence 999999999998885 45556 9999999999998777666677999999999998744321 1 35789999999999
Q ss_pred CC
Q 041391 675 CP 676 (704)
Q Consensus 675 C~ 676 (704)
|+
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=7.4e-20 Score=208.94 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=90.1
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
..++.+....+.+..+.+..|.++++|++|+|++|.++.+ .|..|..+++|++|+|++| .+..+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL---------DFHVFLFNQDLEYLDVSHN-RLQNISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE---------CTTTTTTCTTCCEEECTTS-CCCEECSC--C
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC---------CHHHhCCCCCCCEEECCCC-cCCccCcc--c
Confidence 4566777777777777777889999999999999977632 2567888999999999997 46688875 7
Q ss_pred cccCcEEeeecccCCC-cCCccccccCCCcEEEccCcccccccCccCCCCCCc--cee
Q 041391 438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL--QVL 492 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L--~~L 492 (704)
+++|++|+|++|...+ .+|..++++++|++|++++|.+... .+..+++| ++|
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence 8999999999885443 3457888999999999998876542 23444444 666
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.8e-20 Score=217.30 Aligned_cols=159 Identities=19% Similarity=0.121 Sum_probs=120.8
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhh
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIA 436 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~ 436 (704)
.+++.+....+.+..+.+..|.++++|++|+|++|.++.. .|..|+++++|++|+|++| .+..+|. .|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---------EPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---------CTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc---------CHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 3566676667777777777788899999999999877632 3567788899999999987 4666765 588
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHh--
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGN-- 514 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~-- 514 (704)
++++|++|+|++|...+..|..++++++|++|++++|.+.+..|..++++++|++| ++++|.+.+..+....
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL------LLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE------ECCSSCCCCBCHHHHGGG
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE------EccCCcccccCHHHhhcc
Confidence 89999999999885544445678889999999999998777777778888899998 5888877766554221
Q ss_pred CCCCCcEEEEEeeCCCCc
Q 041391 515 SLKELRKLSIYVNNNAIP 532 (704)
Q Consensus 515 ~L~~L~~L~L~~n~~~~~ 532 (704)
.+++|+.|++++|.+.+.
T Consensus 169 ~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp TTCEESEEECTTCCCCCB
T ss_pred ccccccEEECCCCccccc
Confidence 457788888888876543
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=5.6e-20 Score=200.03 Aligned_cols=267 Identities=17% Similarity=0.093 Sum_probs=167.7
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA 436 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~ 436 (704)
.+++.+....+.+..+.+..|..+++|++|+|++|.++.. .|..|+.+++|++|+|++| .+..+|.. ++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 138 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---------PPHVFQNVPLLTVLVLERN-DLSSLPRGIFH 138 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC---------CHHHhcCCCCCCEEECCCC-ccCcCCHHHhc
Confidence 4566666666667666666788899999999999877632 2456788899999999997 46677765 58
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc-------------cccCCCC
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL-------------VTDAKPN 503 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~-------------~~~ls~n 503 (704)
++++|++|++++|......|..+..+++|++|++++|.+... + ++.+++|+.|.... .-++++|
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEECCCC
Confidence 889999999998866555566688889999999998876532 2 23344444331000 0023333
Q ss_pred CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583 (704)
Q Consensus 504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (704)
.+...... ..++|+.|++++|.+... ..+..+++|+.|++++|.+....+........+..+. +..+ ...
T Consensus 216 ~l~~~~~~---~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n-~l~ 285 (390)
T 3o6n_A 216 SINVVRGP---VNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNN-RLV 285 (390)
T ss_dssp CCCEEECC---CCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE-CCSS-CCC
T ss_pred eeeecccc---ccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE-CCCC-cCc
Confidence 33222111 224555555555555432 2345555555555555554332222111111111111 0001 112
Q ss_pred CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
.+|..+..+ ++|+.|+|++|.+..+|.++..+ +|+.|+|++|.+..++ ...+++|+.|+|++++
T Consensus 286 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 286 ALNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred ccCcccCCC-CCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCC
Confidence 234444445 49999999999999999887766 9999999999998876 4568999999998865
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=6.3e-20 Score=209.52 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred ccceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC--ch
Q 041391 356 QLLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI--PS 433 (704)
Q Consensus 356 ~~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l--P~ 433 (704)
...+++.+....+.+..+.+.+|.++++|++|+|++|.++ .+|.. .+++|++|+|++|. +..+ |.
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----------~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~ 140 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----------NISCC--PMASLRHLDLSFND-FDVLPVCK 140 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC----------EECSC--CCTTCSEEECCSSC-CSBCCCCG
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC----------ccCcc--ccccCCEEECCCCC-ccccCchH
Confidence 3446777777777777777777888899999999988775 23433 67777777777764 4443 35
Q ss_pred hhhccccCcEEeeecccC
Q 041391 434 SIANLSNLRVLDLRCCYY 451 (704)
Q Consensus 434 ~l~~L~~L~~LdLs~c~~ 451 (704)
.++++++|++|++++|..
T Consensus 141 ~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp GGGGCTTCCEEEEECSBC
T ss_pred hhcccCcccEEecCCCcc
Confidence 677777777777776643
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=2.9e-20 Score=211.42 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=143.0
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhc
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIAN 437 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~ 437 (704)
..++.+....+.+....+..|.++++|++|++++|.++. ..|..|..+++|++|+|++|......|..+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT---------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc---------cChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 356777777777776667789999999999999998763 22467899999999999998544444455999
Q ss_pred cccCcEEeeecccCCC-cCCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchh-hHHh
Q 041391 438 LSNLRVLDLRCCYYLT-KLPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGN 514 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~-~lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~ 514 (704)
+++|++|++++|.... ..|..++++++|++|++++|...+.+| ..++.+++|++| ++++|.+.+..+ .+.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~l~- 169 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL------EIKALSLRNYQSQSLK- 169 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE------EEEETTCCEECTTTTT-
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee------eccCCcccccChhhhh-
Confidence 9999999999986554 467789999999999999998666776 469999999999 588888877554 555
Q ss_pred CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC
Q 041391 515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS 558 (704)
Q Consensus 515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~ 558 (704)
.+++|+.|+++.|.... ++. ..+..+++|+.|++++|.+..
T Consensus 170 ~l~~L~~L~l~~n~~~~-~~~--~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAF-LLE--IFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCSEEEEEEEECSBSTT-HHH--HHHHSTTTBSEEEEESCBCTT
T ss_pred ccccCceEecccCcccc-cch--hhHhhcccccEEEccCCcccc
Confidence 88888999988887642 222 224567888888888887654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=2e-19 Score=199.93 Aligned_cols=254 Identities=20% Similarity=0.205 Sum_probs=163.7
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+. .|..+++|++|++++|.++. +| ++.+++|++|+|++|. +..+| ++++
T Consensus 43 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~----------~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l 105 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT----------LD--LSQNTNLTYLACDSNK-LTNLD--VTPL 105 (457)
T ss_dssp TCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC----------CC--CTTCTTCSEEECCSSC-CSCCC--CTTC
T ss_pred CCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe----------Ec--cccCCCCCEEECcCCC-Cceee--cCCC
Confidence 4555555555555442 47788888888888887753 22 6788888888888874 55564 7888
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE 518 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~ 518 (704)
++|++|++++|. +..+| ++.+++|++|++++|.+.+ ++ ++.+++|++| ++++|...+.+ .+. .+++
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L------~l~~n~~~~~~-~~~-~l~~ 171 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTEL------DCHLNKKITKL-DVT-PQTQ 171 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEE------ECTTCSCCCCC-CCT-TCTT
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEE------ECCCCCccccc-ccc-cCCc
Confidence 888888888874 44455 7888888888888887654 43 7788888888 47777555544 455 7788
Q ss_pred CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391 519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK 598 (704)
Q Consensus 519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~ 598 (704)
|+.|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+ ++|+.
T Consensus 172 L~~L~ls~n~l~~-l~-----l~~l~~L~~L~l~~N~l~~~----------------------------~l~~l-~~L~~ 216 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD-----VSQNKLLNRLNCDTNNITKL----------------------------DLNQN-IQLTF 216 (457)
T ss_dssp CCEEECCSSCCCC-CC-----CTTCTTCCEEECCSSCCSCC----------------------------CCTTC-TTCSE
T ss_pred CCEEECCCCccce-ec-----cccCCCCCEEECcCCcCCee----------------------------ccccC-CCCCE
Confidence 8888888887764 22 67778888888888875431 12233 36777
Q ss_pred EEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC--Cccccccccccc-----CcCCCccEE
Q 041391 599 LDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY--LNELNVNWRELQ-----ALFPDLEYL 670 (704)
Q Consensus 599 L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~--l~~L~l~~~~l~-----~~~p~L~~L 670 (704)
|++++|.+..+| +..+ +|+.|++++|.+..+|. ..|++|+.|.+.+ +..++++.+... +.+++|+.|
T Consensus 217 L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L 291 (457)
T 3bz5_A 217 LDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCC
T ss_pred EECcCCcccccC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEE
Confidence 777777776666 4445 77777777777766552 2345555544432 122222222211 334556666
Q ss_pred eeecCCCCCCCCC
Q 041391 671 EKFNCPMISFFPC 683 (704)
Q Consensus 671 ~i~~C~~L~~lP~ 683 (704)
++.+|+.+..+|+
T Consensus 292 ~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 292 DVTHNTQLYLLDC 304 (457)
T ss_dssp CCTTCTTCCEEEC
T ss_pred ECCCCcccceecc
Confidence 6666655554443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=5.4e-20 Score=211.64 Aligned_cols=267 Identities=17% Similarity=0.097 Sum_probs=175.7
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA 436 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~ 436 (704)
..++.+....+.+..+.+..|..+++|++|+|++|.++.+ .|..|+.+++|++|+|++| .+..+|.. ++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 144 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---------PPHVFQNVPLLTVLVLERN-DLSSLPRGIFH 144 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC---------CHHHHcCCCCCCEEEeeCC-CCCCCCHHHhc
Confidence 4667777777777777677889999999999999987642 2456789999999999998 46677765 58
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc-------------cccCCCC
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL-------------VTDAKPN 503 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~-------------~~~ls~n 503 (704)
++++|++|+|++|...+..|..++.+++|++|++++|.+.+. + ++.+++|+.|.... .-++++|
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 221 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence 899999999999876666667789999999999999986543 2 23344444441000 0023333
Q ss_pred CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583 (704)
Q Consensus 504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (704)
.+......+ .++|+.|++++|.+.+. ..+..+++|+.|+|++|.+....+........+..+. +..+ ...
T Consensus 222 ~l~~~~~~~---~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N-~l~ 291 (597)
T 3oja_B 222 SINVVRGPV---NVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNN-RLV 291 (597)
T ss_dssp CCCEEECSC---CSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE-CTTS-CCC
T ss_pred ccccccccc---CCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE-CCCC-CCC
Confidence 332222211 24566666666655432 3455666666666666665433222222222221111 1111 122
Q ss_pred CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
.+|..+..+ ++|+.|+|++|.+..+|.++..+ +|+.|+|++|.+..++ ...+++|+.|+|++++
T Consensus 292 ~l~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 292 ALNLYGQPI-PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECSSSCC-TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred CCCcccccC-CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence 244445455 49999999999999999888767 9999999999998776 4568999999999875
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.1e-19 Score=190.88 Aligned_cols=244 Identities=19% Similarity=0.180 Sum_probs=150.4
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
++|++|++++|.++.+. +..|.++++|++|+|++|......|..++++++|++|++++| .+..+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK---------DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBC---------TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC-
T ss_pred CCCeEEECCCCcCCEeC---------hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc-
Confidence 46667777777654211 234666777777777776433333666667777777777765 3445665544
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCcc--c-hhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC--T-LEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~-~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
++|++|++++|.+....+..+..+++|++| ++++|.+.. . ...+. .+++|+.|++++|.+... + .
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l-~---~ 188 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVV------ELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITTI-P---Q 188 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEE------ECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCSC-C---S
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEE------ECCCCcCCccCcChhhcc-CCCCcCEEECCCCccccC-C---c
Confidence 567777777776554444446666777777 466665542 2 23344 666777777776665431 1 1
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL- 616 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l- 616 (704)
.+ .++|+.|++++|.+.. ..+..+..+ ++|+.|+|++|.+..++. ++..+
T Consensus 189 ~~--~~~L~~L~l~~n~l~~-------------------------~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 189 GL--PPSLTELHLDGNKITK-------------------------VDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp SC--CTTCSEEECTTSCCCE-------------------------ECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGST
T ss_pred cc--cccCCEEECCCCcCCc-------------------------cCHHHhcCC-CCCCEEECCCCcCceeChhhccCCC
Confidence 11 2566777776666422 123344455 488888888888876654 55556
Q ss_pred CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccccccc-----CcCCCccEEeeecCCC
Q 041391 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQ-----ALFPDLEYLEKFNCPM 677 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~-----~~~p~L~~L~i~~C~~ 677 (704)
+|++|+|++|.+..+|... ..+++|+.|+|+++..-.+....+. ...+.|+.|++.++|-
T Consensus 241 ~L~~L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TCCEEECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCEEECCCCcCccCChhh-ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 8888888888888887654 3478888888887654443333332 2357788888888763
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=212.37 Aligned_cols=301 Identities=19% Similarity=0.143 Sum_probs=163.4
Q ss_pred ceeeeeecccCCC-CCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh--
Q 041391 358 LTVSALVNVSEQF-PDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-- 434 (704)
Q Consensus 358 ~~lr~l~~~~~~~-~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-- 434 (704)
..++.+....+.. ..+.+..|.++++|++|+|++|.++. ..|..|+++++|++|+|++|...+.+|..
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF---------LHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE---------ECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc---------cCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 3445544444422 23335567777777777777776642 22566777777777777776544445544
Q ss_pred hhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCC--CCcceecccccccCCCCCCccchh-
Q 041391 435 IANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSL--SELQVLKGFLVTDAKPNDKICTLE- 510 (704)
Q Consensus 435 l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L--~~L~~L~~~~~~~ls~n~l~~~~~- 510 (704)
++++++|++|+|++|...+..| ..++++++|++|++++|.+.+..|..++.+ ++|+.| +++.|.+.+..+
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L------~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF------SLAANSLYSRVSV 192 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC------EECCSBSCCCCCC
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE------ECCCCcccccccc
Confidence 6677777777777765444333 456777777777777776655555555444 455555 244444333221
Q ss_pred hHHhCCC------CCcEEEEEeeCCCCchhh-HH--------------------------------HHhcc--CCCccEE
Q 041391 511 DLGNSLK------ELRKLSIYVNNNAIPIEK-LS--------------------------------ESLEK--FKNLLKL 549 (704)
Q Consensus 511 ~l~~~L~------~L~~L~L~~n~~~~~~~~-l~--------------------------------~~L~~--l~~L~~L 549 (704)
.+. .+. .|+.|++++|.+....+. +. ..+.. .++|+.|
T Consensus 193 ~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 193 DWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred chh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 111 111 244444444432211110 00 00111 1344444
Q ss_pred EEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCC
Q 041391 550 KIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQ 627 (704)
Q Consensus 550 ~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~ 627 (704)
++++|.+....+........+..+ .+..+...+..+..+..+ ++|++|+|++|.+..+ |.++..+ +|+.|+|++|.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVL-NLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEE-EEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred ECCCCcccccChhhhhcCCCCCEE-ECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence 444444332211111111111111 011111112234455555 4899999999888766 5667777 99999999999
Q ss_pred CCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 628 LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 628 l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
+..++...+..+++|+.|+|+++..-. + ..+|+|+.|.+.+| +++.+|.
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i-~~~~~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNALTT-----I-HFIPSIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCCSCC-----C-SSCCSCSEEEEESC-CCCCCCC
T ss_pred CCccChhhhcCCCCCCEEECCCCCCCc-----c-cCCCCcchhccCCC-Ccccccc
Confidence 888887777778899999888764221 1 23677777777776 4555554
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=194.68 Aligned_cols=249 Identities=15% Similarity=0.157 Sum_probs=178.0
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~~ 437 (704)
.++.+....+.+..+.+..|.++++|++|++++|.++.+ .|..|..+++|++|+|++| .+..+|.. +++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC
Confidence 566666666667666666788899999999998877632 2456888899999999987 45666655 788
Q ss_pred cccCcEEeeecccCCCcCCc--cccccCCCcEEEccCccccccc-CccCCCCCCcceecccccccCCCCCCccchh-hHH
Q 041391 438 LSNLRVLDLRCCYYLTKLPK--GLDSLKKLTYLDISECYLIEYM-PKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLG 513 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~--~i~~L~~L~~L~Ls~n~~~~~l-P~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~ 513 (704)
+++|++|++++| .+..+|. .+..+++|++|++++|.....+ |..++.+++|++| ++++|.+.+..+ .+.
T Consensus 123 l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 123 LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL------EIDASDLQSYEPKSLK 195 (353)
T ss_dssp CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE------EEEETTCCEECTTTTT
T ss_pred CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE------ECCCCCcCccCHHHHh
Confidence 899999999987 4556765 6788899999999888534444 5568888888888 588888777644 455
Q ss_pred hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391 514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593 (704)
Q Consensus 514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp 593 (704)
.+++|+.|++++|.+.. ++. ..+..+++|+.|++++|.+....... ++. . ...
T Consensus 196 -~l~~L~~L~l~~n~l~~-~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~---------------------l~~-~-~~~ 248 (353)
T 2z80_A 196 -SIQNVSHLILHMKQHIL-LLE--IFVDVTSSVECLELRDTDLDTFHFSE---------------------LST-G-ETN 248 (353)
T ss_dssp -TCSEEEEEEEECSCSTT-HHH--HHHHHTTTEEEEEEESCBCTTCCCC-----------------------------CC
T ss_pred -ccccCCeecCCCCcccc-chh--hhhhhcccccEEECCCCccccccccc---------------------ccc-c-ccc
Confidence 88889999999888743 322 33556788999999888865321110 000 0 112
Q ss_pred cceeEEEEEcCCCC-----CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 594 RLLEKLDLHCFPLE-----SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~-----~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
..++.++++++.+. .+|.++..+ +|+.|+|++|.++.+|...+..+++|+.|+|++++
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 35667777766553 467777777 89999999998888888776778888888887765
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=8.4e-19 Score=195.50 Aligned_cols=275 Identities=21% Similarity=0.215 Sum_probs=138.1
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+.+ |..+++|++|++++|.++. ++. +..+++|++|+|++| .+..+|. +.++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l 133 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD----------ITP-LANLTNLTGLTLFNN-QITDIDP-LKNL 133 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC----------CGG-GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCcccc----------Chh-hcCCCCCCEEECCCC-CCCCChH-HcCC
Confidence 44444444444444332 5556666666666655432 122 555555566665555 3444444 5555
Q ss_pred ccCcEEeeecccCCCcCCc--------------------cccccCCCcEEEccCcccccccCccCCCCCCcceecccccc
Q 041391 439 SNLRVLDLRCCYYLTKLPK--------------------GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVT 498 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~--------------------~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~ 498 (704)
++|++|++++|. +..+|. .+.++++|++|++++|.+. .++ .+..+++|++|
T Consensus 134 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L------ 204 (466)
T 1o6v_A 134 TNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL------ 204 (466)
T ss_dssp TTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE------
T ss_pred CCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhccCCCCCEE------
Confidence 555555555553 222221 2445555555555555532 222 24555555555
Q ss_pred cCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHh
Q 041391 499 DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAE 578 (704)
Q Consensus 499 ~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~ 578 (704)
++++|.+.+..+ +. .+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ ......+..+. +..
T Consensus 205 ~l~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~-l~~ 274 (466)
T 1o6v_A 205 IATNNQISDITP-LG-ILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK-LGA 274 (466)
T ss_dssp ECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE-CCS
T ss_pred EecCCccccccc-cc-ccCCCCEEECCCCCcccc-----hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE-CCC
Confidence 355555444333 44 556666666666655431 235556666666666665433211 11111111110 011
Q ss_pred hhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccccccc
Q 041391 579 TQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNW 657 (704)
Q Consensus 579 ~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~ 657 (704)
+ ....++. +..+ ++|+.|++++|.+..++. +..+ +|+.|+|++|.+..++. ...+++|+.|++.++..-.+
T Consensus 275 n-~l~~~~~-~~~l-~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 275 N-QISNISP-LAGL-TALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp S-CCCCCGG-GTTC-TTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred C-ccCcccc-ccCC-CccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 1 1112222 3333 366777777666666554 3444 77777777777655544 34567777777777643322
Q ss_pred ccccCcCCCccEEeeecCC
Q 041391 658 RELQALFPDLEYLEKFNCP 676 (704)
Q Consensus 658 ~~l~~~~p~L~~L~i~~C~ 676 (704)
. ....+++|+.|++.+|.
T Consensus 347 ~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 347 S-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp G-GGTTCTTCCEEECCSSC
T ss_pred h-hhccCCCCCEEeCCCCc
Confidence 1 12467888888888774
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.5e-19 Score=209.22 Aligned_cols=235 Identities=18% Similarity=0.129 Sum_probs=148.9
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~ 494 (704)
.|++|++++|...+..|..+..+++|++|+|++|...+.+| ..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L-- 459 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL-- 459 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE--
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc--
Confidence 45555555554333334555666666666666654444444 345566666666666666554445556666666666
Q ss_pred cccccCCCCCCc--cc-hhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccch
Q 041391 495 FLVTDAKPNDKI--CT-LEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNK 571 (704)
Q Consensus 495 ~~~~~ls~n~l~--~~-~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 571 (704)
++++|.+. +. +..+. .+++|+.|++++|.+....+ ..+.++++|+.|++++|.+....
T Consensus 460 ----~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~----------- 520 (680)
T 1ziw_A 460 ----MLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNNLARLW----------- 520 (680)
T ss_dssp ----ECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCGGGG-----------
T ss_pred ----hhccccccccccCCcccc-cCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCCccccc-----------
Confidence 35555443 12 23344 66667777776666654322 34566666777777666643210
Q ss_pred hhHhhHhhhcCCCCC----CcccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEE
Q 041391 572 KQEDEAETQGKGGLD----GTFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVL 645 (704)
Q Consensus 572 ~l~~~~~~~~~~~l~----~~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L 645 (704)
...+| ..+..+ ++|+.|+|++|.+..+|.. +..+ +|+.|+|++|+++.+|...+..+++|+.|
T Consensus 521 ----------~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 521 ----------KHANPGGPIYFLKGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp ----------STTSTTSCCCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ----------hhhccCCcchhhcCC-CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 01111 124455 5899999999999999864 6667 99999999999999999888889999999
Q ss_pred ecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391 646 RLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 646 ~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP 682 (704)
+|+++..-.+....+...+++|+.|++.+||-...++
T Consensus 590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999743332222221268999999999998765554
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4e-20 Score=212.92 Aligned_cols=285 Identities=19% Similarity=0.174 Sum_probs=147.1
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
|..+++|+.|++++|.+. .+| .+..+++|++|++++|. ++.+|. + .+++|++|++++|.....+
T Consensus 281 ~~~l~~L~~L~l~~~~~~----------~l~-~l~~~~~L~~L~l~~n~-l~~lp~-~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIK----------YLE-DVPKHFKWQSLSIIRCQ-LKQFPT-L-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp CGGGTTCSEEEEESCCCC----------CCC-CCCTTCCCSEEEEESCC-CSSCCC-C-CCSSCCEEEEESCSSCEEC--
T ss_pred cccCCCCCEEEecCccch----------hhh-hccccccCCEEEccccc-Cccccc-C-CCCccceeeccCCcCccch--
Confidence 444555555555555432 222 34445555555555543 244442 3 4555555555544333322
Q ss_pred cccccCCCcEEEccCcccccc--cCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhh
Q 041391 458 GLDSLKKLTYLDISECYLIEY--MPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEK 535 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~--lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~ 535 (704)
.++.+++|++|++++|.+.+. +|..++.+++|++| ++++|.+......+. .+++|+.|++++|.+.+..+.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L------~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL------DLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE------ECCSCSEEEECCCCT-TCTTCCEEECTTSEEESTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe------ECCCCccccchhhcc-CCCCCCeeECCCCccCCccCh
Confidence 233444444444444443322 13334444444444 244444333333333 444444444444443322110
Q ss_pred HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC-CCCCcccccccceeEEEEEcCCCCCC-cccC
Q 041391 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG-GLDGTFGQKDRLLEKLDLHCFPLESL-PNWL 613 (704)
Q Consensus 536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l 613 (704)
..+..+++|+.|++++|.+....+........+..+. +..+...+ .+|..+..+ ++|+.|+|++|.+..+ |.++
T Consensus 418 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 418 --SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK-MAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp --TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE-CTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTT
T ss_pred --hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE-CCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhh
Confidence 1234444444444444443322222111111111111 01111111 245566666 4999999999998766 4667
Q ss_pred CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCC-CccEEeeecCCCCCCCCCCCCCcccc
Q 041391 614 SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFP-DLEYLEKFNCPMISFFPCDANGVWIK 691 (704)
Q Consensus 614 ~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p-~L~~L~i~~C~~L~~lP~~~~~~W~~ 691 (704)
..+ +|++|+|++|++..++......+++|+.|+|+++..-.+... + ..+| +|+.|++.+||-...++..+...|..
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~-~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L-QHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G-GGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H-hhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 777 999999999999888666677789999999999763322221 2 3566 69999999998766666532223443
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=210.73 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCCCcccccccceeEEEEEcCCCC--CCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccc
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLE--SLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWREL 660 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~--~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l 660 (704)
..|..+..+ ++|+.|+|++|.+. .+|.++..+ +|+.|+|++|.+..++......+++|+.|+|+++..-.+....+
T Consensus 436 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 436 AFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 344555555 48888888888764 577777777 88888888888877765556678889999888875333211112
Q ss_pred cCcCCCccEEeeecCCCCCCCCCC
Q 041391 661 QALFPDLEYLEKFNCPMISFFPCD 684 (704)
Q Consensus 661 ~~~~p~L~~L~i~~C~~L~~lP~~ 684 (704)
..+++|+.|++.+|+--..+|..
T Consensus 515 -~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 515 -DRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp -TTCTTCCEEECCSSCBCCCTTTT
T ss_pred -hcccCCcEEEecCCcccCCCcch
Confidence 46789999999998765555543
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=1e-18 Score=194.84 Aligned_cols=284 Identities=21% Similarity=0.199 Sum_probs=161.2
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+......+..+. .+..+++|++|++++|.++. +|. +..+++|++|++++| .+..++. ++++
T Consensus 47 ~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~----------~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l 111 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD----------ITP-LKNLTKLVDILMNNN-QIADITP-LANL 111 (466)
T ss_dssp TCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC----------CGG-GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred cccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC----------chh-hhccccCCEEECCCC-ccccChh-hcCC
Confidence 4555555544444432 26789999999999998763 344 899999999999998 4667776 9999
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc---------------cccCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL---------------VTDAKPN 503 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~---------------~~~ls~n 503 (704)
++|++|++++| .+..+|. +.++++|++|++++|.+.. +|. ++.+++|++|.... .-++++|
T Consensus 112 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 112 TNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCccCC-Chh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 99999999998 4556664 8999999999999998543 443 66666666663100 0023333
Q ss_pred CCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391 504 DKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583 (704)
Q Consensus 504 ~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (704)
.+.. ++.+. .+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... + .......+..+ .+..+. ..
T Consensus 188 ~l~~-~~~l~-~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L-~l~~n~-l~ 256 (466)
T 1o6v_A 188 KVSD-ISVLA-KLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDI-G-TLASLTNLTDL-DLANNQ-IS 256 (466)
T ss_dssp CCCC-CGGGG-GCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE-ECCSSC-CC
T ss_pred cCCC-Chhhc-cCCCCCEEEecCCccccccc-----ccccCCCCEEECCCCCcccc-h-hhhcCCCCCEE-ECCCCc-cc
Confidence 3222 12233 44444444444444332211 33444455555554443221 0 00000000000 001111 11
Q ss_pred CCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA 662 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~ 662 (704)
.++. +..+ ++|+.|++++|.+..+|. +..+ +|+.|+|++|.+..++. ...+++|+.|+|+++..-.+. . ..
T Consensus 257 ~~~~-~~~l-~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~-~~ 328 (466)
T 1o6v_A 257 NLAP-LSGL-TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--P-VS 328 (466)
T ss_dssp CCGG-GTTC-TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--G-GG
T ss_pred cchh-hhcC-CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch--h-hc
Confidence 1111 3333 356666666666655554 4444 66666666666655544 344667777777666433211 1 24
Q ss_pred cCCCccEEeeecCCCCCCC
Q 041391 663 LFPDLEYLEKFNCPMISFF 681 (704)
Q Consensus 663 ~~p~L~~L~i~~C~~L~~l 681 (704)
.+++|+.|++.+| .++.+
T Consensus 329 ~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp GCTTCCEEECCSS-CCCCC
T ss_pred cCccCCEeECCCC-ccCCc
Confidence 6788888888877 45544
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=204.98 Aligned_cols=264 Identities=17% Similarity=0.143 Sum_probs=158.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++.+ .|..|.++++|++|+|++|......|..|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---------EDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE---------CTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc---------CcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 456666666666666666788888888888888876532 13567788888888888875333334668888
Q ss_pred ccCcEEeeecccCCCcCCc-cccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccchh-hHHhC
Q 041391 439 SNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNS 515 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~ 515 (704)
++|++|++++|. +..+|. .++++++|++|++++|.+.. .+|..++++++|++| ++++|.+....+ .+. .
T Consensus 100 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L------~l~~n~l~~~~~~~~~-~ 171 (570)
T 2z63_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------DLSSNKIQSIYCTDLR-V 171 (570)
T ss_dssp TTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE------ECTTSCCCEECGGGGH-H
T ss_pred cccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE------eCcCCccceecHHHcc-c
Confidence 888888888874 444443 57888888888888887655 467778888888888 477777665543 333 5
Q ss_pred CCCC----cEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC-------------------------CCCCcccc
Q 041391 516 LKEL----RKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS-------------------------KCRNQEGN 566 (704)
Q Consensus 516 L~~L----~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~-------------------------~~~~~~~~ 566 (704)
+++| ..|++++|.+....+ ..+..+ +|+.|++++|.... ........
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~---~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQP---GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECT---TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred hhccchhhhhcccCCCCceecCH---HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 5555 566666666543222 222222 45555555442110 00000000
Q ss_pred cccchhhH-------hhHhh-hcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCC
Q 041391 567 NEHNKKQE-------DEAET-QGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKK 638 (704)
Q Consensus 567 ~~~~~~l~-------~~~~~-~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~ 638 (704)
......+. ....+ ...+.++..+..+ ++|+.|++++|.+..+|.++..++|++|++++|.+..+|.. .
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~---~ 323 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---K 323 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBC---B
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcc---c
Confidence 00000000 00000 1223345555555 48888888888888888877666888888888887766652 2
Q ss_pred CCCcCEEec
Q 041391 639 YSTVKVLRL 647 (704)
Q Consensus 639 f~~L~~L~L 647 (704)
+++|+.|.+
T Consensus 324 l~~L~~L~l 332 (570)
T 2z63_A 324 LKSLKRLTF 332 (570)
T ss_dssp CSSCCEEEE
T ss_pred ccccCEEeC
Confidence 344444444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.9e-19 Score=191.46 Aligned_cols=243 Identities=18% Similarity=0.125 Sum_probs=173.6
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
++|++|++++|.++.+ .|..|..+++|++|+|++|......|..++++++|++|+|++| .+..+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISEL---------RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP- 122 (332)
T ss_dssp TTCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC-
T ss_pred CCCeEEECCCCcCCcc---------CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc-
Confidence 5788888888876531 1456788888888888887544344677888888888888887 4557777665
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCcc--chh-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKIC--TLE-DLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~--~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
++|++|++++|.+....+..++.+++|++| ++++|.+.. ..+ .+. .+ +|+.|++++|.+... + .
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l~~l-~---~ 189 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCI------EMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKLTGI-P---K 189 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEE------ECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBCSSC-C---S
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEE------ECCCCccccCCCCccccc-CC-ccCEEECcCCCCCcc-C---c
Confidence 788888888887654444457788888888 577777653 223 333 55 788888888876642 2 1
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL- 616 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l- 616 (704)
.+ .++|+.|++++|.+... .+..+..+ ++|+.|+|++|.+..++. ++..+
T Consensus 190 ~~--~~~L~~L~l~~n~i~~~-------------------------~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 190 DL--PETLNELHLDHNKIQAI-------------------------ELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp SS--CSSCSCCBCCSSCCCCC-------------------------CTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cc--cCCCCEEECCCCcCCcc-------------------------CHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCC
Confidence 22 26788888888775321 22345555 489999999999988765 66667
Q ss_pred CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC-----cCCCccEEeeecCCC
Q 041391 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA-----LFPDLEYLEKFNCPM 677 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~-----~~p~L~~L~i~~C~~ 677 (704)
+|++|+|++|.+..+|... ..+++|+.|+|+++..-.+....+.. .++.|+.|++.++|-
T Consensus 242 ~L~~L~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TCCEEECCSSCCCBCCTTG-GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCEEECCCCcCeecChhh-hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 9999999999999988764 45899999999987654444333332 267899999999874
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.2e-19 Score=197.11 Aligned_cols=222 Identities=19% Similarity=0.153 Sum_probs=175.8
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC-cccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP-KGLD 460 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP-~~i~ 460 (704)
++|++|+|++|.++.+ .|..|.++++|++|+|++|......|..+.++++|++|+|++|.. ..+| ..+.
T Consensus 75 ~~l~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI---------QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSS
T ss_pred CCccEEECcCCcCceE---------CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhc
Confidence 6899999999987642 256789999999999999854444457799999999999999854 4555 4588
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-h-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-E-DLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
.+++|++|++++|.+....+..+..+++|++| ++++|+....+ + .+. .+++|+.|++++|.+... +
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~~-~---- 212 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRL------DLGELKKLEYISEGAFE-GLFNLKYLNLGMCNIKDM-P---- 212 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEE------ECCCCTTCCEECTTTTT-TCTTCCEEECTTSCCSSC-C----
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEE------eCCCCCCccccChhhcc-CCCCCCEEECCCCccccc-c----
Confidence 89999999999998765444568899999999 57775444444 3 355 899999999999988643 2
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL- 616 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l- 616 (704)
.+..+++|+.|+|++|.+... .|..+..+ ++|+.|+|++|.+..+ |..+..+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEI-------------------------RPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEE-------------------------CGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccEEECcCCcCccc-------------------------CcccccCc-cCCCEEEeCCCcCceECHHHhcCCC
Confidence 477889999999999885421 23445556 4899999999998766 4556666
Q ss_pred CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
+|+.|+|++|++..++...+..+++|+.|+|.+++
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 99999999999999998888889999999998865
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=195.77 Aligned_cols=222 Identities=19% Similarity=0.189 Sum_probs=176.4
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc-ccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK-GLD 460 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~-~i~ 460 (704)
+++++|+|++|.++.+ .+..|.++++|++|+|++|......+..|.++++|++|+|++|. +..+|. .+.
T Consensus 64 ~~l~~L~L~~n~i~~~---------~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII---------KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFV 133 (440)
T ss_dssp TTCSEEECCSCCCCEE---------CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSC
T ss_pred CCCcEEEccCCcCCee---------CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhh
Confidence 6899999999987642 24678999999999999985444444679999999999999985 455554 689
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch-h-hHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL-E-DLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~-~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
.+++|++|++++|.+....+..+..+++|++| ++++|+....+ + .+. .+++|+.|++++|.+.. ++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L------~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n~l~~-~~---- 201 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRL------DLGELKRLSYISEGAFE-GLSNLRYLNLAMCNLRE-IP---- 201 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEE------ECCCCTTCCEECTTTTT-TCSSCCEEECTTSCCSS-CC----
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEe------CCCCCCCcceeCcchhh-cccccCeecCCCCcCcc-cc----
Confidence 99999999999999765555578899999999 57775544444 3 355 89999999999998763 33
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCc-ccCCCC-
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLP-NWLSGL- 616 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP-~~l~~l- 616 (704)
.+..+++|+.|+|++|.+... .|..+..+ ++|+.|+|++|.+..++ ..+..+
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAI-------------------------RPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEE-------------------------CTTTTTTC-TTCCEEECTTCCCCEECTTSSTTCT
T ss_pred ccCCCcccCEEECCCCccCcc-------------------------ChhhhccC-ccCCEEECCCCceeEEChhhhcCCC
Confidence 478889999999999985421 23445555 48999999999987765 456666
Q ss_pred CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 617 NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
+|+.|+|++|++..++...+..+++|+.|+|.+++
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 99999999999999998888889999999998865
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.4e-19 Score=190.98 Aligned_cols=223 Identities=19% Similarity=0.203 Sum_probs=172.9
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhcc-------CCcccceeeeeccCCCCCCchhh--hccccCcEEeeecccCCCc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELK-------NMSALRLLSLQGVYGIREIPSSI--ANLSNLRVLDLRCCYYLTK 454 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-------~L~~Lr~L~Ls~n~~l~~lP~~l--~~L~~L~~LdLs~c~~l~~ 454 (704)
|++|+|++|.++.. .+|..+. .+++|++|+|++|...+.+|..+ +.+++|++|+|++|...+
T Consensus 65 L~~L~L~~n~l~~~--------~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 135 (312)
T 1wwl_A 65 IKSLSLKRLTVRAA--------RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT- 135 (312)
T ss_dssp HHHCCCCEEEEEEE--------ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-
T ss_pred HhhcccccccccCC--------CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-
Confidence 88889998876422 2344443 78999999999997666788876 899999999999985544
Q ss_pred CCcccccc-----CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc---hhhH--HhCCCCCcEEEE
Q 041391 455 LPKGLDSL-----KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LEDL--GNSLKELRKLSI 524 (704)
Q Consensus 455 lP~~i~~L-----~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~---~~~l--~~~L~~L~~L~L 524 (704)
+|..++.+ ++|++|++++|.+.+..|..++.+++|++| ++++|.+.+. ++.+ . .+++|+.|++
T Consensus 136 ~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L 208 (312)
T 1wwl_A 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL------DLSDNPELGERGLISALCPL-KFPTLQVLAL 208 (312)
T ss_dssp SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE------ECCSCTTCHHHHHHHHSCTT-SCTTCCEEEC
T ss_pred hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE------ECCCCCcCcchHHHHHHHhc-cCCCCCEEEC
Confidence 48888887 899999999999877766889999999999 6999987654 2344 5 8899999999
Q ss_pred EeeCCCCchhhHH-HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEc
Q 041391 525 YVNNNAIPIEKLS-ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHC 603 (704)
Q Consensus 525 ~~n~~~~~~~~l~-~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~ 603 (704)
++|.+.. ++.++ ..+..+++|+.|++++|.+....+. ..+..+ ++|+.|+|++
T Consensus 209 ~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~~l-~~L~~L~Ls~ 262 (312)
T 1wwl_A 209 RNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------PSCDWP-SQLNSLNLSF 262 (312)
T ss_dssp TTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------SCCCCC-TTCCEEECTT
T ss_pred CCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------hhhhhc-CCCCEEECCC
Confidence 9998874 33333 3456889999999999986432100 122223 5899999999
Q ss_pred CCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 604 FPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 604 ~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
|.+..+|.++. .+|++|+|++|+++.+|. ...+++|+.|+|.+++
T Consensus 263 N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 263 TGLKQVPKGLP-AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCCSSCC-SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCT
T ss_pred CccChhhhhcc-CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCC
Confidence 99999998776 589999999999988865 5567888888887754
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.6e-19 Score=188.04 Aligned_cols=224 Identities=18% Similarity=0.152 Sum_probs=163.1
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhH-hccCCcccceeeeeccCCCCCC---chhhhccccCcEEeeecccCCCcCCc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLK-ELKNMSALRLLSLQGVYGIREI---PSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~-~l~~L~~Lr~L~Ls~n~~l~~l---P~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
++|++|++++|.++ .+|. .|.++++|++|+|++|. +..+ |..+..+++|++|+|++| .+..+|.
T Consensus 28 ~~l~~L~L~~n~l~----------~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~ 95 (306)
T 2z66_A 28 SSATRLELESNKLQ----------SLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS 95 (306)
T ss_dssp TTCCEEECCSSCCC----------CCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred CCCCEEECCCCccC----------ccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChh
Confidence 57889999998775 3343 36888999999999874 4444 567778899999999987 4567888
Q ss_pred cccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
.+..+++|++|++++|.+....+ ..+..+++|++| ++++|.+....+.....+++|+.|++++|.+.+. ..
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 167 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FL 167 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE------ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EE
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEE------ECCCCcCCccchhhcccCcCCCEEECCCCccccc--cc
Confidence 88889999999999988654433 467888889988 5888887766654333788888998888876531 12
Q ss_pred HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCC
Q 041391 537 SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSG 615 (704)
Q Consensus 537 ~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~ 615 (704)
+..+..+++|+.|++++|.+... .|..+..+ ++|+.|+|++|.+..++. .+..
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQL-------------------------SPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEE-------------------------CTTTTTTC-TTCCEEECTTSCCSBCCSGGGTT
T ss_pred hhHHhhCcCCCEEECCCCCcCCc-------------------------CHHHhcCC-CCCCEEECCCCccCccChhhccC
Confidence 24577788888888888875321 23344455 478888888888877664 4555
Q ss_pred C-CeeEEEEEcCCCCCcCCCccCCCC-CcCEEecCCCc
Q 041391 616 L-NLRKLYIRGGQLRSLQGDTHKKYS-TVKVLRLRYLN 651 (704)
Q Consensus 616 l-~L~~L~Ls~n~l~~lp~~~~~~f~-~L~~L~L~~l~ 651 (704)
+ +|+.|+|++|.+...+......++ +|+.|+|++++
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 5 888888888888776655555564 78888887754
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.1e-19 Score=188.76 Aligned_cols=243 Identities=22% Similarity=0.207 Sum_probs=190.7
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hhccccCcEEeeecccCC--CcCCccccc
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IANLSNLRVLDLRCCYYL--TKLPKGLDS 461 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~~L~~L~~LdLs~c~~l--~~lP~~i~~ 461 (704)
+.++.+++.++ .+|..+ .++|++|+|++| .+..+|.. +.++++|++|+|++|... +..|..+..
T Consensus 10 ~~l~c~~~~l~----------~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLT----------SVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCS----------SCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CEEEcCCCCcc----------cCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 46788877665 445444 368999999998 46678765 689999999999998543 223677888
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh--hHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE--DLGNSLKELRKLSIYVNNNAIPIEKLSES 539 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~--~l~~~L~~L~~L~L~~n~~~~~~~~l~~~ 539 (704)
+++|++|++++|.+. .+|..+..+++|++| ++++|.+....+ .+. .+++|+.|++++|.+....+ ..
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~---~~ 145 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFN---GI 145 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEE------ECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECST---TT
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEE------ECCCCcccccccchhhh-hccCCCEEECCCCcCCccch---hh
Confidence 999999999999855 678789999999999 589998877654 566 89999999999998765443 56
Q ss_pred hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC-cccCCCC-C
Q 041391 540 LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-N 617 (704)
Q Consensus 540 L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~ 617 (704)
+..+++|++|++++|.+.. ..+|..+..+ ++|++|+|++|.+..+ |.++..+ +
T Consensus 146 ~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQE------------------------NFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTCEEGG------------------------GEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccCcCCCEEECCCCcccc------------------------ccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 7889999999999887421 0134555566 4999999999999877 5677777 9
Q ss_pred eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcC-CCccEEeeecCCC
Q 041391 618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALF-PDLEYLEKFNCPM 677 (704)
Q Consensus 618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~-p~L~~L~i~~C~~ 677 (704)
|+.|+|++|.+..++......+++|+.|+|+++.........+ ..+ ++|++|++.+|+-
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCE
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCe
Confidence 9999999999999888777789999999999986544222223 345 5999999999864
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=2.8e-19 Score=206.17 Aligned_cols=97 Identities=25% Similarity=0.257 Sum_probs=73.1
Q ss_pred CCCcccccccceeEEEEEcCCCCCC-cccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccC
Q 041391 585 LDGTFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQA 662 (704)
Q Consensus 585 l~~~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~ 662 (704)
+|..+..+ ++|+.|+|++|.+..+ |..+..+ +|++|+|++|++..++...+..+++|+.|+|+++....+....+..
T Consensus 486 ~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 486 LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred Cchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 45556666 4899999999998876 4567777 9999999999999998888888999999999887644433333333
Q ss_pred cCCCccEEeeecCCCCCCCC
Q 041391 663 LFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 663 ~~p~L~~L~i~~C~~L~~lP 682 (704)
.+++|+.|++.++|--.++.
T Consensus 565 l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCTTCCEEECTTCCBCCSGG
T ss_pred hhCcCCEEEeeCCCCcccCC
Confidence 34689999999987644433
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=9.3e-19 Score=194.35 Aligned_cols=224 Identities=23% Similarity=0.224 Sum_probs=181.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~ 437 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++.+ .|..|.++++|++|+|++|. +..+|. .+.+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI---------EVGAFNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---------CTTTTTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc---------ChhhccCcccCCEEECCCCc-CCccChhhhcc
Confidence 566777777777777778899999999999999987642 24678999999999999985 566664 4889
Q ss_pred cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
+++|++|+|++|......+..+.++++|++|++++|...+.+|. .+..+++|++| ++++|.+... +.+. .+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------~L~~n~l~~~-~~~~-~l 217 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL------NLGMCNIKDM-PNLT-PL 217 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE------ECTTSCCSSC-CCCT-TC
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE------ECCCCccccc-cccc-cc
Confidence 99999999999855433344689999999999999777777776 48899999999 6999987754 6777 89
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
++|+.|++++|.+.+..+ ..+.++++|+.|+|++|.+... .+..+..+ ++|
T Consensus 218 ~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l-~~L 268 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRP---GSFHGLSSLKKLWVMNSQVSLI-------------------------ERNAFDGL-ASL 268 (452)
T ss_dssp TTCCEEECTTSCCSEECG---GGGTTCTTCCEEECTTSCCCEE-------------------------CTTTTTTC-TTC
T ss_pred ccccEEECcCCcCcccCc---ccccCccCCCEEEeCCCcCceE-------------------------CHHHhcCC-CCC
Confidence 999999999999876444 5789999999999999985421 23344555 499
Q ss_pred eEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCC
Q 041391 597 EKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLR 629 (704)
Q Consensus 597 ~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~ 629 (704)
+.|+|++|.+..+|... ..+ +|+.|+|++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999999888654 455 9999999999873
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=3.1e-18 Score=190.25 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=126.0
Q ss_pred cceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhh
Q 041391 357 LLTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIA 436 (704)
Q Consensus 357 ~~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~ 436 (704)
...++.+....+.+..+. |..+++|++|++++|.++. ++ ++.+++|++|++++| .+..+| ++
T Consensus 63 l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~----------~~--~~~l~~L~~L~L~~N-~l~~l~--~~ 124 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN----------LD--VTPLTKLTYLNCDTN-KLTKLD--VS 124 (457)
T ss_dssp CTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC----------CC--CTTCTTCCEEECCSS-CCSCCC--CT
T ss_pred cCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce----------ee--cCCCCcCCEEECCCC-cCCeec--CC
Confidence 345666666666665542 7889999999999997763 22 788899999999998 455665 88
Q ss_pred ccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 437 NLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 437 ~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
.+++|++|++++|.. ..+| ++.+++|++|++++|...+.+ .++.+++|++| ++++|.+.+. + +. .+
T Consensus 125 ~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L------~ls~n~l~~l-~-l~-~l 190 (457)
T 3bz5_A 125 QNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL------DCSFNKITEL-D-VS-QN 190 (457)
T ss_dssp TCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE------ECCSSCCCCC-C-CT-TC
T ss_pred CCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEE------ECCCCcccee-c-cc-cC
Confidence 899999999998854 4454 788899999999998766666 37788899999 5888887764 3 66 88
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCC
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYS 558 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~ 558 (704)
++|+.|++++|.+.+. .+..+++|+.|++++|.+..
T Consensus 191 ~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccc
Confidence 8999999998887653 37788899999998888543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=191.46 Aligned_cols=223 Identities=20% Similarity=0.223 Sum_probs=179.5
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~ 437 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++.+ .+..|.++++|++|+|++|. +..+|. .+..
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 134 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---------EIGAFNGLANLNTLELFDNR-LTTIPNGAFVY 134 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---------CGGGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---------ChhhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence 456666667777777778899999999999999987642 24678999999999999984 666664 6899
Q ss_pred cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCC
Q 041391 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSL 516 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L 516 (704)
+++|++|+|++|......+..+.++++|++|++++|.....++. .+..+++|++| ++++|.+.. ++.+. .+
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------~L~~n~l~~-~~~~~-~l 206 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL------NLAMCNLRE-IPNLT-PL 206 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE------ECTTSCCSS-CCCCT-TC
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee------cCCCCcCcc-ccccC-CC
Confidence 99999999999855444444789999999999999777777776 48899999999 599998764 45677 89
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccce
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLL 596 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L 596 (704)
++|+.|++++|.+....+ ..+.++++|+.|+|++|.+... .+..+..+ ++|
T Consensus 207 ~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~-------------------------~~~~~~~l-~~L 257 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRP---GSFQGLMHLQKLWMIQSQIQVI-------------------------ERNAFDNL-QSL 257 (440)
T ss_dssp SSCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEE-------------------------CTTSSTTC-TTC
T ss_pred cccCEEECCCCccCccCh---hhhccCccCCEEECCCCceeEE-------------------------ChhhhcCC-CCC
Confidence 999999999998875433 5788999999999999885421 23344555 489
Q ss_pred eEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCC
Q 041391 597 EKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQL 628 (704)
Q Consensus 597 ~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l 628 (704)
+.|+|++|.+..+|.. +..+ +|+.|+|++|.+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 9999999999988865 4455 999999999987
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=185.72 Aligned_cols=251 Identities=21% Similarity=0.169 Sum_probs=184.7
Q ss_pred CCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-c
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-L 459 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i 459 (704)
++|++|++++|.++. +| ..|..+++|++|+|++|......|..++++++|++|+|++|. +..+|.. +
T Consensus 52 ~~L~~L~l~~n~i~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNRITY----------ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSCCCE----------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred ccCcEEECCCCcCcc----------cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence 589999999998763 33 368999999999999985444445679999999999999984 4566665 8
Q ss_pred cccCCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCC-Cccchh-hHHhCCCCCcEEEEEeeCCCCchhh
Q 041391 460 DSLKKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPND-KICTLE-DLGNSLKELRKLSIYVNNNAIPIEK 535 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~-l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~ 535 (704)
+++++|++|++++|.+. .+|. .++.+++|++| ++++|. +....+ .+. .+++|+.|++++|.+.+..+
T Consensus 121 ~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L------~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~- 191 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL------RVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEP- 191 (353)
T ss_dssp TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE------EEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECT-
T ss_pred CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE------ECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCH-
Confidence 89999999999999865 5665 68899999999 587774 444433 455 89999999999998875433
Q ss_pred HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCccc-CC
Q 041391 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNW-LS 614 (704)
Q Consensus 536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~-l~ 614 (704)
..+..+++|++|++++|.+.. +|..+....++|+.|++++|.+..++.. +.
T Consensus 192 --~~l~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 192 --KSLKSIQNVSHLILHMKQHIL--------------------------LLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp --TTTTTCSEEEEEEEECSCSTT--------------------------HHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred --HHHhccccCCeecCCCCcccc--------------------------chhhhhhhcccccEEECCCCccccccccccc
Confidence 568889999999999988521 1222222235899999999988766422 11
Q ss_pred ---CC-CeeEEEEEcCCCCC-----cCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCC
Q 041391 615 ---GL-NLRKLYIRGGQLRS-----LQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 615 ---~l-~L~~L~Ls~n~l~~-----lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP 682 (704)
.. .++.++|+++.+.. +|.. ...+++|+.|+|+++..-.+... +...+++|++|++.+|+-...+|
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccchhhccccccccccCcchhhhHHH-HhcccCCCEEECCCCCCCccCHH-HHhcCCCCCEEEeeCCCccCcCC
Confidence 12 78888888887743 3322 34589999999998754332221 11568999999999997655554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.8e-18 Score=179.70 Aligned_cols=203 Identities=22% Similarity=0.186 Sum_probs=144.5
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC-Cccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-PKGL 459 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-P~~i 459 (704)
.++|++|++++|.++.+ .+..|..+++|++|+|++|......|..+.++++|++|++++|..+..+ |..+
T Consensus 31 ~~~l~~L~l~~n~i~~~---------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV---------PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEE---------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCcCCcc---------CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 46888888888877532 1345788888888888887543333677888888888888887645555 6678
Q ss_pred cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
..+++|++|++++|.+....|..+..+++|++| ++++|.+....+. +. .+++|+.|++++|.+....+ .
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~---~ 171 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------YLQDNALQALPDDTFR-DLGNLTHLFLHGNRISSVPE---R 171 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCEECT---T
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE------ECCCCcccccCHhHhc-cCCCccEEECCCCcccccCH---H
Confidence 888888888888888776666778888888888 5888877766654 44 78888888888887653222 3
Q ss_pred HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcc-cCCCC-
Q 041391 539 SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPN-WLSGL- 616 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l- 616 (704)
.+..+++|+.|++++|.+... .|..+..+ ++|+.|+|++|.+..+|. ++..+
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHV-------------------------HPHAFRDL-GRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEE-------------------------CTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhcCccccCEEECCCCccccc-------------------------CHhHccCc-ccccEeeCCCCcCCcCCHHHcccCc
Confidence 467778888888887774321 23344444 378888888877776663 35555
Q ss_pred CeeEEEEEcCCC
Q 041391 617 NLRKLYIRGGQL 628 (704)
Q Consensus 617 ~L~~L~Ls~n~l 628 (704)
+|+.|+|++|++
T Consensus 226 ~L~~L~l~~N~~ 237 (285)
T 1ozn_A 226 ALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCE
T ss_pred ccCEEeccCCCc
Confidence 788888887776
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=8.6e-19 Score=184.84 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=164.6
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhc--cCCcccceeeeeccCCCCCCchhhhcc-----ccCcEEeeecccCC
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKEL--KNMSALRLLSLQGVYGIREIPSSIANL-----SNLRVLDLRCCYYL 452 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l--~~L~~Lr~L~Ls~n~~l~~lP~~l~~L-----~~L~~LdLs~c~~l 452 (704)
++++|++|+|++|.+++ .+|..+ ..+++|++|+|++|. +..+|..++.+ ++|++|+|++|...
T Consensus 93 ~l~~L~~L~L~~n~l~~---------~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG---------TAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TTSCCCEEEEEEEBCBS---------CCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred CcCCccEEEccCCcccc---------hhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 68999999999998763 345555 899999999999985 55668888888 99999999999766
Q ss_pred CcCCccccccCCCcEEEccCcccccc--cCccC--CCCCCcceecccccccCCCCCCccc---hhhHHhCCCCCcEEEEE
Q 041391 453 TKLPKGLDSLKKLTYLDISECYLIEY--MPKEL--SSLSELQVLKGFLVTDAKPNDKICT---LEDLGNSLKELRKLSIY 525 (704)
Q Consensus 453 ~~lP~~i~~L~~L~~L~Ls~n~~~~~--lP~~i--~~L~~L~~L~~~~~~~ls~n~l~~~---~~~l~~~L~~L~~L~L~ 525 (704)
+..|..++.+++|++|++++|.+.+. +|..+ +.+++|++| ++++|.+... ...+...+++|+.|+++
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL------ALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE------ECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE------ECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 66668899999999999999987654 34444 899999999 6999998742 33444488999999999
Q ss_pred eeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC
Q 041391 526 VNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP 605 (704)
Q Consensus 526 ~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~ 605 (704)
+|.+.+..+. ..+..+++|+.|++++|.+. .+|..+. ++|++|+|++|.
T Consensus 237 ~N~l~~~~~~--~~~~~l~~L~~L~Ls~N~l~--------------------------~ip~~~~---~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 237 HNSLRDAAGA--PSCDWPSQLNSLNLSFTGLK--------------------------QVPKGLP---AKLSVLDLSYNR 285 (312)
T ss_dssp TSCCCSSCCC--SCCCCCTTCCEEECTTSCCS--------------------------SCCSSCC---SEEEEEECCSSC
T ss_pred CCcCCcccch--hhhhhcCCCCEEECCCCccC--------------------------hhhhhcc---CCceEEECCCCC
Confidence 9998764421 34566899999999999854 2455544 589999999999
Q ss_pred CCCCcccCCCC-CeeEEEEEcCCCCC
Q 041391 606 LESLPNWLSGL-NLRKLYIRGGQLRS 630 (704)
Q Consensus 606 l~~lP~~l~~l-~L~~L~Ls~n~l~~ 630 (704)
+..+|. +..+ +|++|+|++|++..
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCChh-HhhCCCCCEEeccCCCCCC
Confidence 999987 6677 99999999998853
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=3.9e-20 Score=195.59 Aligned_cols=254 Identities=17% Similarity=0.118 Sum_probs=180.5
Q ss_pred CCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeec
Q 041391 369 QFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRC 448 (704)
Q Consensus 369 ~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~ 448 (704)
.++......+..+++|++|+|++|.++. ..|..|..+++|++|+|++|. +..++. +..+++|++|++++
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCC---------CCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCS
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCc---------CCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcC
Confidence 3344444567778889999999997763 235678899999999999984 555554 88899999999998
Q ss_pred ccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEee
Q 041391 449 CYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVN 527 (704)
Q Consensus 449 c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n 527 (704)
|. +..+| .+++|++|++++|.+.+..+. .+++|++| ++++|.+....+ .+. .+++|+.|++++|
T Consensus 90 n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L------~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N 154 (317)
T 3o53_A 90 NY-VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNI------YLANNKITMLRDLDEG-CRSRVQYLDLKLN 154 (317)
T ss_dssp SE-EEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEE------ECCSSCCCSGGGBCTG-GGSSEEEEECTTS
T ss_pred Cc-ccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEE------ECCCCCCCCccchhhh-ccCCCCEEECCCC
Confidence 74 44443 448899999999986544333 46788888 588888877665 444 7889999999998
Q ss_pred CCCCchhhHHHHh-ccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391 528 NNAIPIEKLSESL-EKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606 (704)
Q Consensus 528 ~~~~~~~~l~~~L-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l 606 (704)
.+....+ ..+ ..+++|+.|++++|.+.. ++... .+ ++|++|+|++|.+
T Consensus 155 ~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~--------------------------~~~~~-~l-~~L~~L~Ls~N~l 203 (317)
T 3o53_A 155 EIDTVNF---AELAASSDTLEHLNLQYNFIYD--------------------------VKGQV-VF-AKLKTLDLSSNKL 203 (317)
T ss_dssp CCCEEEG---GGGGGGTTTCCEEECTTSCCCE--------------------------EECCC-CC-TTCCEEECCSSCC
T ss_pred CCCcccH---HHHhhccCcCCEEECCCCcCcc--------------------------ccccc-cc-ccCCEEECCCCcC
Confidence 8765433 233 467899999999888542 11111 23 5899999999998
Q ss_pred CCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCC
Q 041391 607 ESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISF 680 (704)
Q Consensus 607 ~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~ 680 (704)
..+|..+..+ +|+.|+|++|.+..+|... ..+++|+.|+|++++...-........+|.|+.|++.+|+.++.
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 8888777766 9999999999998887653 45788999999887644101111224567777777775544443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-19 Score=190.49 Aligned_cols=263 Identities=17% Similarity=0.152 Sum_probs=198.7
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+.+..|..+++|++|+|++|.++. .+. +..+++|++|+|++|. +..+| .+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~ 98 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----------TLD-LESLSTLRTLDLNNNY-VQELL----VG 98 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE----------EEE-ETTCTTCCEEECCSSE-EEEEE----EC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc----------chh-hhhcCCCCEEECcCCc-ccccc----CC
Confidence 56777777777888778889999999999999998753 222 8899999999999984 55555 45
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLK 517 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~ 517 (704)
++|++|++++|.. ..++. ..+++|++|++++|.+....|..++.+++|++| ++++|.+....+ .+...++
T Consensus 99 ~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 99 PSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL------DLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp TTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE------ECTTSCCCEEEGGGGGGGTT
T ss_pred CCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEE------ECCCCCCCcccHHHHhhccC
Confidence 8999999999854 44443 347899999999999877667778899999999 699999887654 4433789
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccccccee
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE 597 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~ 597 (704)
+|+.|++++|.+... + ....+++|+.|++++|.+.. +|..+..+ ++|+
T Consensus 170 ~L~~L~L~~N~l~~~-~----~~~~l~~L~~L~Ls~N~l~~--------------------------l~~~~~~l-~~L~ 217 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV-K----GQVVFAKLKTLDLSSNKLAF--------------------------MGPEFQSA-AGVT 217 (317)
T ss_dssp TCCEEECTTSCCCEE-E----CCCCCTTCCEEECCSSCCCE--------------------------ECGGGGGG-TTCS
T ss_pred cCCEEECCCCcCccc-c----cccccccCCEEECCCCcCCc--------------------------chhhhccc-Cccc
Confidence 999999999988643 2 23458999999999998542 34445555 5999
Q ss_pred EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCC-CcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecC
Q 041391 598 KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLR-SLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNC 675 (704)
Q Consensus 598 ~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~-~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C 675 (704)
.|+|++|.+..+|..+..+ +|+.|+|++|.+. .........++.|+.|.+..++.+. .........+.+....-..|
T Consensus 218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~~~~~~~~~~~~~~~~~~cc 296 (317)
T 3o53_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT-GQNEEECTVPTLGHYGAYCC 296 (317)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH-SSSSCCCSSTTCEEETTEEE
T ss_pred EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc-CCchhccCCCceecccceee
Confidence 9999999999999988888 9999999999986 2222334457888888887766664 22222223344444445567
Q ss_pred CCCC
Q 041391 676 PMIS 679 (704)
Q Consensus 676 ~~L~ 679 (704)
..|.
T Consensus 297 ~~l~ 300 (317)
T 3o53_A 297 EDLP 300 (317)
T ss_dssp BCCT
T ss_pred ccCC
Confidence 6655
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4.8e-18 Score=176.50 Aligned_cols=219 Identities=20% Similarity=0.167 Sum_probs=158.9
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccC
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLK 463 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~ 463 (704)
++++.+++.++ .+|..+ .++|++|+|++|. +..+| ..+.++++|++|+|++|...+..|..+..++
T Consensus 14 ~~~~c~~~~l~----------~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQGLQ----------AVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CEEECCSSCCS----------SCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred eEEEcCcCCcc----------cCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 56777777654 334333 4688888888874 45555 5688888888888888755555577788888
Q ss_pred CCcEEEccCcc-cccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 464 KLTYLDISECY-LIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 464 ~L~~L~Ls~n~-~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
+|++|++++|. +....|..+..+++|++| ++++|.+....+.....+++|+.|++++|.+....+ ..+..
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~ 151 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTL------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRD 151 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEE------ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTT
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEE------ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH---hHhcc
Confidence 88888888887 444446678888888888 588888777655433378888888888888764333 34778
Q ss_pred CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCC-cccCCCC-Cee
Q 041391 543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESL-PNWLSGL-NLR 619 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~l-P~~l~~l-~L~ 619 (704)
+++|+.|++++|.+.. ++. .+..+ ++|+.|+|++|.+..+ |.++..+ +|+
T Consensus 152 l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISS--------------------------VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CTTCCEEECCSSCCCE--------------------------ECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCccEEECCCCcccc--------------------------cCHHHhcCc-cccCEEECCCCcccccCHhHccCccccc
Confidence 8888888888887532 122 24444 4888888888888665 6677777 888
Q ss_pred EEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391 620 KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE 652 (704)
Q Consensus 620 ~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~ 652 (704)
.|+|++|.+..++......+++|+.|+|++++.
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 888888888887766666788888888887653
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.8e-17 Score=191.00 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=109.5
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~ 437 (704)
.++.+....+.+..+.+..|.++++|++|+|++|.++.+. |.+|.++++|++|+|++|. +..+| ..|.+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~---------~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---------DGAYQSLSHLSTLILTGNP-IQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC---------TTTTTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC---------hhHhcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence 5677777788888888888999999999999999876321 3568999999999999984 66776 45899
Q ss_pred cccCcEEeeecccCCCcCC-ccccccCCCcEEEccCccccc-ccCccCCCCCCcceecccccccCCCCCCccc
Q 041391 438 LSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIE-YMPKELSSLSELQVLKGFLVTDAKPNDKICT 508 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~ 508 (704)
|++|++|+|++|.. ..+| ..|++|++|++|++++|.+.. .+|..++.+++|++| ++++|.+.+.
T Consensus 123 L~~L~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L------~L~~N~l~~~ 188 (635)
T 4g8a_A 123 LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------DLSSNKIQSI 188 (635)
T ss_dssp CTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE------ECCSSCCCEE
T ss_pred CCCCCEEECCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh------cccCcccccc
Confidence 99999999999854 5555 458999999999999998754 467778899999999 5888876554
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.9e-17 Score=171.11 Aligned_cols=203 Identities=19% Similarity=0.133 Sum_probs=124.8
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
++|++|++++|.++.+. +..|..+++|++|+|++|. +..++ ..+.++++|++|+|++|......|..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG---------SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCCCCEEC---------TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCccEEECCCCcccccC---------HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 46888888888765321 2357778888888888874 44444 4677788888888888755444456677
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc--hhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT--LEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~--~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
++++|++|++++|.+....+..++.+++|++| ++++|.+... +..+. .+++|+.|++++|.+....+....
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKEL------NVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE------ECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEE------ECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhh
Confidence 88888888888887655444457777777777 4777776652 33455 777777777777766543332223
Q ss_pred HhccCCCcc-EEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccC-CCC
Q 041391 539 SLEKFKNLL-KLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWL-SGL 616 (704)
Q Consensus 539 ~L~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l 616 (704)
.+..++.|. .|++++|.+.. ++...... .+|+.|+|++|.+..+|..+ ..+
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~--------------------------~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNF--------------------------IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCE--------------------------ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhccccceeeecCCCcccc--------------------------cCccccCC-CcccEEECCCCceeecCHhHhccc
Confidence 333444443 56666665321 11112222 25666666666666665543 334
Q ss_pred -CeeEEEEEcCCC
Q 041391 617 -NLRKLYIRGGQL 628 (704)
Q Consensus 617 -~L~~L~Ls~n~l 628 (704)
+|+.|+|++|++
T Consensus 224 ~~L~~L~l~~N~~ 236 (276)
T 2z62_A 224 TSLQKIWLHTNPW 236 (276)
T ss_dssp CSCCEEECCSSCB
T ss_pred ccccEEEccCCcc
Confidence 666666666655
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=2.3e-17 Score=170.52 Aligned_cols=208 Identities=23% Similarity=0.214 Sum_probs=164.5
Q ss_pred hhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCC
Q 041391 406 KFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELS 484 (704)
Q Consensus 406 ~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~ 484 (704)
.+|..+. ++|++|+|++|. +..++. .+.++++|++|++++|......+..+..+++|++|++++|.+....|..+.
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3455443 579999999985 555554 799999999999999855544455789999999999999998776667899
Q ss_pred CCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCc
Q 041391 485 SLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ 563 (704)
Q Consensus 485 ~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~ 563 (704)
.+++|++| ++++|.+....+ .+. .+++|+.|++++|.+... .++..+..+++|+.|++++|.+....
T Consensus 98 ~l~~L~~L------~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~~~--- 165 (276)
T 2z62_A 98 GLSSLQKL------VAVETNLASLENFPIG-HLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIY--- 165 (276)
T ss_dssp TCTTCCEE------ECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSCCCEEC---
T ss_pred CCccccEE------ECCCCCccccCchhcc-cCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCCCCcCC---
Confidence 99999999 588888877665 466 899999999999988642 12357889999999999999864311
Q ss_pred ccccccchhhHhhHhhhcCCCCCCccccccccee----EEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCC
Q 041391 564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLE----KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKK 638 (704)
Q Consensus 564 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~----~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~ 638 (704)
+..+..+ .+|+ .|++++|.+..+|...... +|+.|+|++|.++.+|...+..
T Consensus 166 ----------------------~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 166 ----------------------CTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp ----------------------GGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred ----------------------HHHhhhh-hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc
Confidence 1122222 2444 8999999999888776666 9999999999999999888788
Q ss_pred CCCcCEEecCCCc
Q 041391 639 YSTVKVLRLRYLN 651 (704)
Q Consensus 639 f~~L~~L~L~~l~ 651 (704)
+++|+.|+|++++
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 9999999997654
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=175.24 Aligned_cols=229 Identities=17% Similarity=0.133 Sum_probs=171.3
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhh--hccccCcEEeeecccCCCcCC--
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSI--ANLSNLRVLDLRCCYYLTKLP-- 456 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l--~~L~~L~~LdLs~c~~l~~lP-- 456 (704)
...++.|.+.++.++... ...++. +..+++|++|+|++|...+..|..+ ..+++|++|+|++|...+..|
T Consensus 63 ~~~l~~l~l~~~~~~~~~-----~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQL-----LVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp SCCCCEEEECSCCCBHHH-----HHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred hcceeEEEEeCCcCCHHH-----HHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 345788888888664211 112222 2345679999999997777788777 899999999999997666544
Q ss_pred --ccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc---hhh--HHhCCCCCcEEEEEeeCC
Q 041391 457 --KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT---LED--LGNSLKELRKLSIYVNNN 529 (704)
Q Consensus 457 --~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~---~~~--l~~~L~~L~~L~L~~n~~ 529 (704)
..+..+++|++|++++|.+....|..++.+++|++| ++++|.+.+. ... +. .+++|+.|++++|.+
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL------DLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGM 209 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE------ECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCC
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE------ECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCC
Confidence 345679999999999999877777789999999999 6999987642 111 24 789999999999988
Q ss_pred CCchhhHHHH-hccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccccc--ccceeEEEEEcCCC
Q 041391 530 AIPIEKLSES-LEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQK--DRLLEKLDLHCFPL 606 (704)
Q Consensus 530 ~~~~~~l~~~-L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l--p~~L~~L~Ls~~~l 606 (704)
.. ++..+.. +..+++|++|+|++|.+.... |..+..+ +++|++|+|++|.+
T Consensus 210 ~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------------------------p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 210 ET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-------------------------NPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp CC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-------------------------CSCCSSCCCCTTCCCEECCSSCC
T ss_pred Cc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-------------------------hhhHHhccCcCcCCEEECCCCCC
Confidence 63 3443343 578899999999999965422 3223332 25899999999999
Q ss_pred CCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 607 ESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 607 ~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
..+|.++. .+|+.|+|++|++..+|. ...+++|+.|+|++++
T Consensus 264 ~~lp~~~~-~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 EQVPKGLP-AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSCCC-SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTT
T ss_pred Cchhhhhc-CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCC
Confidence 99988775 399999999999988765 3557888888887754
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.4e-18 Score=194.77 Aligned_cols=237 Identities=18% Similarity=0.130 Sum_probs=169.9
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
..+++|++|+|++|.++. ..|..|..+++|++|+|++|. +...++ ++.+++|++|+|++|. +..+|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ---------ISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL-- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCC---------CCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEE--
T ss_pred ccCCCccEEEeeCCcCCC---------CCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCC--
Confidence 345589999999997763 224678889999999999985 444444 8889999999999873 44444
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchh-hHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-DLGNSLKELRKLSIYVNNNAIPIEKLS 537 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-~l~~~L~~L~~L~L~~n~~~~~~~~l~ 537 (704)
..++|++|++++|.+.+..+. .+++|++| ++++|.+.+..+ .+. .+++|+.|++++|.+.+..+
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L------~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--- 161 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNI------YLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNF--- 161 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEE------ECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEG---
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEE------ECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcCh---
Confidence 348899999999986654433 46788888 588888887765 455 78899999999988876443
Q ss_pred HHhc-cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC
Q 041391 538 ESLE-KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL 616 (704)
Q Consensus 538 ~~L~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l 616 (704)
..+. .+++|+.|+|++|.+.. ++.. ..+ ++|+.|+|++|.+..+|..+..+
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~--------------------------~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~~~l 213 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYD--------------------------VKGQ-VVF-AKLKTLDLSSNKLAFMGPEFQSA 213 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE--------------------------EECC-CCC-TTCCEEECCSSCCCEECGGGGGG
T ss_pred HHHhhhCCcccEEecCCCcccc--------------------------cccc-ccC-CCCCEEECCCCCCCCCCHhHcCC
Confidence 3444 68899999998888542 1111 123 48999999999888888777766
Q ss_pred -CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeee
Q 041391 617 -NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKF 673 (704)
Q Consensus 617 -~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~ 673 (704)
+|+.|+|++|.+..+|.. ...+++|+.|+|.+++...-........++.|+.|.+.
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 899999999998888776 34578889998888764410111112456666666664
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.8e-17 Score=171.47 Aligned_cols=201 Identities=21% Similarity=0.144 Sum_probs=151.4
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+.++++|+.++++++.++ .+|..+. ++|++|+|++|......|..+.++++|++|+|++| .+..+|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT----------ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV 72 (290)
T ss_dssp EECSTTCCEEECTTSCCS----------SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred ccccCCccEEECCCCCCC----------cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC
Confidence 567888888999888775 3454443 67889999988544444567888899999999887 4455554
Q ss_pred cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS 537 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~ 537 (704)
. +.+++|++|++++|.+. .+|..+..+++|++| ++++|.+....+.....+++|+.|++++|++....+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L------~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--- 141 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL------DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--- 141 (290)
T ss_dssp C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE------ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT---
T ss_pred C-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEE------ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh---
Confidence 3 78888999999988754 778778888888888 588888887765433388889999999888765433
Q ss_pred HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCc-ccccccceeEEEEEcCCCCCCcccCCCC
Q 041391 538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGT-FGQKDRLLEKLDLHCFPLESLPNWLSGL 616 (704)
Q Consensus 538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~lp~~L~~L~Ls~~~l~~lP~~l~~l 616 (704)
..+..+++|+.|+|++|.+.. +|.. +..+ ++|+.|+|++|.+..+|.++...
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~--------------------------l~~~~~~~l-~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTE--------------------------LPAGLLNGL-ENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSC--------------------------CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhcccccCCCEEECCCCcCCc--------------------------cCHHHhcCc-CCCCEEECCCCcCCccChhhccc
Confidence 456788889999998887542 3332 3344 48999999999999999888777
Q ss_pred -CeeEEEEEcCCCC
Q 041391 617 -NLRKLYIRGGQLR 629 (704)
Q Consensus 617 -~L~~L~Ls~n~l~ 629 (704)
+|+.|+|++|++.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 8999999998873
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.4e-16 Score=180.82 Aligned_cols=236 Identities=21% Similarity=0.101 Sum_probs=138.6
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDS 461 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~ 461 (704)
++|++|+|++|.++ .+|. .+++|++|+|++| .++.+|. .+++|++|+|++| .+..+|. .
T Consensus 61 ~~L~~L~L~~N~l~----------~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLT----------SLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---L 119 (622)
T ss_dssp TTCSEEEECSCCCS----------CCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---C
T ss_pred CCCcEEEecCCCCC----------CCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---C
Confidence 56666666666554 2232 3566666666665 3555655 4566666666665 3444554 4
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE 541 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~ 541 (704)
+++|++|++++|.+. .+|.. +++|++| ++++|.+.+... .+.+|+.|++++|.+.. ++ .
T Consensus 120 l~~L~~L~L~~N~l~-~lp~~---l~~L~~L------~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~------~ 178 (622)
T 3g06_A 120 PSGLCKLWIFGNQLT-SLPVL---PPGLQEL------SVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP------M 178 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCCC---CTTCCEE------ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC------C
T ss_pred CCCcCEEECCCCCCC-cCCCC---CCCCCEE------ECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc------c
Confidence 556666666666533 35542 3556666 366665544321 23456666666665543 11 2
Q ss_pred cCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCeeEE
Q 041391 542 KFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNLRKL 621 (704)
Q Consensus 542 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L~~L 621 (704)
.+++|+.|++++|.+.. .+... ..+..+. +. +.....+|. .+++|+.|+|++|.+..+|..+. +|+.|
T Consensus 179 ~~~~L~~L~Ls~N~l~~-l~~~~---~~L~~L~-L~-~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp~~l~--~L~~L 246 (622)
T 3g06_A 179 LPSGLQELSVSDNQLAS-LPTLP---SELYKLW-AY-NNRLTSLPA----LPSGLKELIVSGNRLTSLPVLPS--ELKEL 246 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCCCC---TTCCEEE-CC-SSCCSSCCC----CCTTCCEEECCSSCCSCCCCCCT--TCCEE
T ss_pred cCCCCcEEECCCCCCCC-CCCcc---chhhEEE-Cc-CCcccccCC----CCCCCCEEEccCCccCcCCCCCC--cCcEE
Confidence 34566666666665432 11110 0000000 00 111222332 23689999999999998883332 89999
Q ss_pred EEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391 622 YIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM 677 (704)
Q Consensus 622 ~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~ 677 (704)
+|++|.+..+|. .+++|+.|+|+++..-.+. .....+++|+.|++.+|+-
T Consensus 247 ~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp--~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC--GGGGGSCTTCEEECCSCCC
T ss_pred ECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC--HHHhhccccCEEEecCCCC
Confidence 999999988887 4789999999987533221 1125789999999999863
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=1.8e-17 Score=183.95 Aligned_cols=269 Identities=17% Similarity=0.091 Sum_probs=149.3
Q ss_pred ceeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCccc-------------ceeeeec
Q 041391 358 LTVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSAL-------------RLLSLQG 424 (704)
Q Consensus 358 ~~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~L-------------r~L~Ls~ 424 (704)
.+++.+....+.+ ...|..|.++++|++|++++|.++ ..+|..++.+.+| ++|++++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~---------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE---------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHH---------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCccc---------ccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 3555555555555 233456788888888888887553 2467777777764 8888888
Q ss_pred cCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCC
Q 041391 425 VYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPND 504 (704)
Q Consensus 425 n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~ 504 (704)
| .+..+|.. .++|++|++++|.. ..+|.. +++|++|++++|.+. .+|.. .++|++| ++++|.
T Consensus 81 ~-~l~~lp~~---~~~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L------~L~~n~ 142 (454)
T 1jl5_A 81 L-GLSSLPEL---PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYL------GVSNNQ 142 (454)
T ss_dssp S-CCSCCCSC---CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEE------ECCSSC
T ss_pred C-ccccCCCC---cCCCCEEEccCCcC-Cccccc---cCCCcEEECCCCccC-cccCC---CCCCCEE------ECcCCC
Confidence 7 46666662 36788888888744 447753 367777777777643 23321 1567777 477777
Q ss_pred CccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCC
Q 041391 505 KICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGG 584 (704)
Q Consensus 505 l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (704)
+.+ ++++. .+++|+.|++++|.+.+ ++. ...+|++|++++|.+.. .+ .......+..+. +..+. ...
T Consensus 143 l~~-lp~~~-~l~~L~~L~l~~N~l~~-lp~------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~-l~~N~-l~~ 209 (454)
T 1jl5_A 143 LEK-LPELQ-NSSFLKIIDVDNNSLKK-LPD------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY-ADNNS-LKK 209 (454)
T ss_dssp CSS-CCCCT-TCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE-CCSSC-CSS
T ss_pred CCC-CcccC-CCCCCCEEECCCCcCcc-cCC------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEE-CCCCc-CCc
Confidence 665 44566 77777777777777653 221 12467777777776543 22 111111111110 11111 112
Q ss_pred CCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCc
Q 041391 585 LDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQAL 663 (704)
Q Consensus 585 l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~ 663 (704)
+| ..+.+|++|++++|.+..+|. +..+ +|++|++++|.+..+|.. +++|+.|+++++..-. +...
T Consensus 210 l~----~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~-----l~~~ 275 (454)
T 1jl5_A 210 LP----DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD-----LPEL 275 (454)
T ss_dssp CC----CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSC-----CCCC
T ss_pred CC----CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccc-----cCcc
Confidence 33 233578888888888888885 5566 888888888888777642 4788888887754221 2223
Q ss_pred CCCccEEeeecCCCCCCCC
Q 041391 664 FPDLEYLEKFNCPMISFFP 682 (704)
Q Consensus 664 ~p~L~~L~i~~C~~L~~lP 682 (704)
+++|+.|++.+| .++.+|
T Consensus 276 ~~~L~~L~ls~N-~l~~l~ 293 (454)
T 1jl5_A 276 PQSLTFLDVSEN-IFSGLS 293 (454)
T ss_dssp CTTCCEEECCSS-CCSEES
T ss_pred cCcCCEEECcCC-ccCccc
Confidence 456666666665 344443
No 69
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2.3e-16 Score=175.08 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=33.7
Q ss_pred ccceeEEEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 593 DRLLEKLDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 593 p~~L~~L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
|++|+.|++++|.+..+|.++. +|+.|++++|.+..+|. .+++|+.|+|+++.
T Consensus 316 ~~~L~~L~Ls~N~l~~lp~~~~--~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIELPALPP--RLERLIASFNHLAEVPE----LPQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred cCcCCEEECCCCccccccccCC--cCCEEECCCCccccccc----hhhhccEEECCCCC
Confidence 3466777777666666665432 67777777777766665 25667777776654
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=8e-17 Score=169.45 Aligned_cols=197 Identities=19% Similarity=0.196 Sum_probs=152.5
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..+++|++|++++|.++ .+| .+..+++|++|+|++| .+..++. +.++++|++|+|++|. +..+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~----------~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT----------TIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCC----------CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred HHHcCCcCEEEeeCCCcc----------Cch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-
Confidence 345778899999998765 233 5778899999999997 5677777 8899999999999884 55565
Q ss_pred cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS 537 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~ 537 (704)
.+..+++|++|++++|.+.. +|. +..+++|++| ++++|.+....+ +. .+++|+.|++++|.+... +
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L------~l~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~~-~--- 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL------YLDLNQITNISP-LA-GLTNLQYLSIGNAQVSDL-T--- 167 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE------ECCSSCCCCCGG-GG-GCTTCCEEECCSSCCCCC-G---
T ss_pred hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE------ECCCCccCcCcc-cc-CCCCccEEEccCCcCCCC-h---
Confidence 68889999999999998654 554 8889999999 588888766544 66 889999999999987643 2
Q ss_pred HHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-
Q 041391 538 ESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL- 616 (704)
Q Consensus 538 ~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l- 616 (704)
.+..+++|+.|++++|.+.. ++. +..+ ++|++|+|++|.+..++. +..+
T Consensus 168 -~l~~l~~L~~L~l~~n~l~~--------------------------~~~-l~~l-~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 168 -PLANLSKLTTLKADDNKISD--------------------------ISP-LASL-PNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp -GGTTCTTCCEEECCSSCCCC--------------------------CGG-GGGC-TTCCEEECTTSCCCBCGG-GTTCT
T ss_pred -hhcCCCCCCEEECCCCccCc--------------------------Chh-hcCC-CCCCEEEccCCccCcccc-ccCCC
Confidence 27888999999999888543 121 3344 489999999999888874 5666
Q ss_pred CeeEEEEEcCCCCCcCC
Q 041391 617 NLRKLYIRGGQLRSLQG 633 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~ 633 (704)
+|+.|+|++|++...|.
T Consensus 218 ~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 218 NLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEEEEEEEEECCCE
T ss_pred CCCEEEccCCeeecCCe
Confidence 99999999998866554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.7e-17 Score=184.22 Aligned_cols=224 Identities=15% Similarity=0.129 Sum_probs=173.4
Q ss_pred hhhHhccCC----cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc
Q 041391 406 KFLKELKNM----SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK 481 (704)
Q Consensus 406 ~lp~~l~~L----~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~ 481 (704)
.+|..+..+ ++|++|+|++|......|..++++++|++|+|++|...+..| ++.+++|++|++++|.+. .+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC
Confidence 455555544 499999999986555556789999999999999986544444 899999999999999865 3443
Q ss_pred cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCC
Q 041391 482 ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCR 561 (704)
Q Consensus 482 ~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~ 561 (704)
.++|++| ++++|.+.+..+. .+++|+.|++++|.+.+..+ ..+..+++|+.|+|++|.+...
T Consensus 98 ----~~~L~~L------~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~-- 159 (487)
T 3oja_A 98 ----GPSIETL------HAANNNISRVSCS---RGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDTV-- 159 (487)
T ss_dssp ----CTTCCEE------ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCCCEE--
T ss_pred ----CCCcCEE------ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCCCCc--
Confidence 3889999 5999998876653 56899999999999886544 4678899999999999986431
Q ss_pred CcccccccchhhHhhHhhhcCCCCCCccc-ccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCC
Q 041391 562 NQEGNNEHNKKQEDEAETQGKGGLDGTFG-QKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKY 639 (704)
Q Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f 639 (704)
.|..+. .+ ++|+.|+|++|.+..+|.... + +|+.|+|++|.+..+|.. ...+
T Consensus 160 -----------------------~~~~l~~~l-~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~-~~~l 213 (487)
T 3oja_A 160 -----------------------NFAELAASS-DTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE-FQSA 213 (487)
T ss_dssp -----------------------EGGGGGGGT-TTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCEECGG-GGGG
T ss_pred -----------------------ChHHHhhhC-CcccEEecCCCcccccccccc-CCCCCEEECCCCCCCCCCHh-HcCC
Confidence 123333 34 589999999999988876553 5 999999999999988876 4568
Q ss_pred CCcCEEecCCCcccccccccccCcCCCccEEeeecCCCC
Q 041391 640 STVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMI 678 (704)
Q Consensus 640 ~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L 678 (704)
++|+.|+|+++..-.+ ......+++|+.|++.+|+-.
T Consensus 214 ~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 214 AGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBC
T ss_pred CCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCc
Confidence 9999999998653321 111256789999999998653
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-16 Score=162.28 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=86.1
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcc-cc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKG-LD 460 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~-i~ 460 (704)
.++.++++++.++ .+|..+. .+|++|+|++|. +..+| ..+.++++|++|+|++|. +..+|.. +.
T Consensus 17 ~~~~l~~~~~~l~----------~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLT----------AIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTS
T ss_pred CCCEEEccCCCCC----------ccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhc
Confidence 4667777777665 2343332 467777777764 44444 356777777777777763 3445444 46
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHh
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESL 540 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L 540 (704)
.+++|++|++++|.+....+..+..+++|++| ++++|.+....+.....+++|+.|++++|.+....+ ..+
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~ 153 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAEL------RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---GVF 153 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEE------ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH---hHc
Confidence 67777777777776544333445666666666 466666555544322255666666666665543221 224
Q ss_pred ccCCCccEEEEEecC
Q 041391 541 EKFKNLLKLKIAWGA 555 (704)
Q Consensus 541 ~~l~~L~~L~Ls~n~ 555 (704)
..+++|+.|++++|.
T Consensus 154 ~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQ 168 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCc
Confidence 455555555555554
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=5.4e-16 Score=177.96 Aligned_cols=236 Identities=21% Similarity=0.072 Sum_probs=162.6
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+.. .+++|++|+|++|.++ .+|. .+++|++|+|++| .+..+|. .+
T Consensus 62 ~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l 120 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT----------SLPV---LPPGLLELSIFSN-PLTHLPA---LP 120 (622)
T ss_dssp TCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS----------CCCC---CCTTCCEEEECSC-CCCCCCC---CC
T ss_pred CCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC----------cCCC---CCCCCCEEECcCC-cCCCCCC---CC
Confidence 45555555555554432 5789999999999776 3344 6789999999997 5677777 57
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE 518 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~ 518 (704)
.+|++|++++| .+..+|.. +++|++|++++|.+. .+|.. +.+|+.| ++++|.+.... . .+++
T Consensus 121 ~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L------~L~~N~l~~l~---~-~~~~ 182 (622)
T 3g06_A 121 SGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKL------WAYNNQLTSLP---M-LPSG 182 (622)
T ss_dssp TTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEE------ECCSSCCSCCC---C-CCTT
T ss_pred CCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEE------ECCCCCCCCCc---c-cCCC
Confidence 88999999987 56667764 488999999999754 45653 4567777 47777766543 3 5678
Q ss_pred CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeE
Q 041391 519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEK 598 (704)
Q Consensus 519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~ 598 (704)
|+.|++++|.+.. ++. .+++|+.|++++|.+.. .+... ..+..+ .+..| ....+| ..+++|+.
T Consensus 183 L~~L~Ls~N~l~~-l~~------~~~~L~~L~L~~N~l~~-l~~~~---~~L~~L-~Ls~N-~L~~lp----~~l~~L~~ 245 (622)
T 3g06_A 183 LQELSVSDNQLAS-LPT------LPSELYKLWAYNNRLTS-LPALP---SGLKEL-IVSGN-RLTSLP----VLPSELKE 245 (622)
T ss_dssp CCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSS-CCCCC---TTCCEE-ECCSS-CCSCCC----CCCTTCCE
T ss_pred CcEEECCCCCCCC-CCC------ccchhhEEECcCCcccc-cCCCC---CCCCEE-EccCC-ccCcCC----CCCCcCcE
Confidence 8888888887754 221 23677778887777543 22111 111111 11111 223344 22368999
Q ss_pred EEEEcCCCCCCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCccc
Q 041391 599 LDLHCFPLESLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNEL 653 (704)
Q Consensus 599 L~Ls~~~l~~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L 653 (704)
|+|++|.+..+|..+. +|+.|+|++|.+..+|.. ...+++|+.|+|++++.-
T Consensus 246 L~Ls~N~L~~lp~~~~--~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 246 LMVSGNRLTSLPMLPS--GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSSCCSCCCCCCT--TCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCC
T ss_pred EECCCCCCCcCCcccc--cCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCC
Confidence 9999999999988222 999999999999999865 456899999999987643
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=171.52 Aligned_cols=205 Identities=16% Similarity=0.078 Sum_probs=157.1
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhc--cCCcccceeeeeccCCCCCCc----hhhhccccCcEEeeecccCCC
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKEL--KNMSALRLLSLQGVYGIREIP----SSIANLSNLRVLDLRCCYYLT 453 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l--~~L~~Lr~L~Ls~n~~l~~lP----~~l~~L~~L~~LdLs~c~~l~ 453 (704)
.+++|++|++++|.++. ..|..+ ..+++|++|+|++|......| ..+..+++|++|+|++|....
T Consensus 89 ~~~~L~~L~l~~n~l~~---------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKITG---------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HHSCCCEEEEESCCCBS---------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred ccCceeEEEeeCCEecc---------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence 34679999999998763 345556 899999999999986554444 345679999999999997766
Q ss_pred cCCccccccCCCcEEEccCcccccc--cC--ccCCCCCCcceecccccccCCCCCCccchh---hHHhCCCCCcEEEEEe
Q 041391 454 KLPKGLDSLKKLTYLDISECYLIEY--MP--KELSSLSELQVLKGFLVTDAKPNDKICTLE---DLGNSLKELRKLSIYV 526 (704)
Q Consensus 454 ~lP~~i~~L~~L~~L~Ls~n~~~~~--lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~---~l~~~L~~L~~L~L~~ 526 (704)
..|..++.+++|++|++++|.+.+. ++ ..++.+++|++| ++++|.+..... .+...+++|+.|++++
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L------~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL------ALRNTGMETPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC------BCCSSCCCCHHHHHHHHHHHTCCCSSEECTT
T ss_pred hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE------ECCCCCCCchHHHHHHHHhcCCCCCEEECCC
Confidence 6677899999999999999986542 32 335789999999 699998864332 2333889999999999
Q ss_pred eCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC
Q 041391 527 NNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL 606 (704)
Q Consensus 527 n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l 606 (704)
|.+.+..+.....+..+++|++|+|++|.+. .+|..++ ++|+.|+|++|.+
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--------------------------~lp~~~~---~~L~~L~Ls~N~l 284 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE--------------------------QVPKGLP---AKLRVLDLSSNRL 284 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--------------------------SCCSCCC---SCCSCEECCSCCC
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC--------------------------chhhhhc---CCCCEEECCCCcC
Confidence 9987654421122233379999999999864 2455443 5999999999999
Q ss_pred CCCcccCCCC-CeeEEEEEcCCCC
Q 041391 607 ESLPNWLSGL-NLRKLYIRGGQLR 629 (704)
Q Consensus 607 ~~lP~~l~~l-~L~~L~Ls~n~l~ 629 (704)
..+|. +..+ +|+.|+|++|++.
T Consensus 285 ~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 285 NRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CCCch-hhhCCCccEEECcCCCCC
Confidence 98876 4555 9999999999874
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=2.7e-18 Score=186.52 Aligned_cols=264 Identities=16% Similarity=0.112 Sum_probs=184.7
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCC----CCchhh-------hccccCcEE
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR----EIPSSI-------ANLSNLRVL 444 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~----~lP~~l-------~~L~~L~~L 444 (704)
..+..+++|++|+|++|.++.. ....++..+..+++|++|+|++|. +. .+|..+ ..+++|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~-----~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTE-----AARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHH-----HHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHhcCCCccEEECCCCCCCHH-----HHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3467788999999999977532 112356668899999999999973 33 445544 688999999
Q ss_pred eeecccCCC----cCCccccccCCCcEEEccCcccccccC----ccCCCC---------CCcceecccccccCCCCCCc-
Q 041391 445 DLRCCYYLT----KLPKGLDSLKKLTYLDISECYLIEYMP----KELSSL---------SELQVLKGFLVTDAKPNDKI- 506 (704)
Q Consensus 445 dLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~~~~lP----~~i~~L---------~~L~~L~~~~~~~ls~n~l~- 506 (704)
+|++|.... .+|..+..+++|++|++++|.+....+ ..+..+ ++|++| ++++|.+.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L------~L~~n~l~~ 173 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI------ICGRNRLEN 173 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE------ECCSSCCTG
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE------ECCCCCCCc
Confidence 999986655 478888999999999999998753333 233334 889999 58888876
Q ss_pred cchh----hHHhCCCCCcEEEEEeeCCCCc-hhhHHH-HhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhh
Q 041391 507 CTLE----DLGNSLKELRKLSIYVNNNAIP-IEKLSE-SLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQ 580 (704)
Q Consensus 507 ~~~~----~l~~~L~~L~~L~L~~n~~~~~-~~~l~~-~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~ 580 (704)
..++ .+. .+++|+.|++++|.+... +..+.. .+..+++|+.|+|++|.+...
T Consensus 174 ~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~--------------------- 231 (386)
T 2ca6_A 174 GSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--------------------- 231 (386)
T ss_dssp GGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---------------------
T ss_pred HHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---------------------
Confidence 3344 444 788999999999987521 122334 788899999999999884210
Q ss_pred cCCCCCCcccccccceeEEEEEcCCCCC-----CcccCCC--C-CeeEEEEEcCCCCC-----cCCCccCCCCCcCEEec
Q 041391 581 GKGGLDGTFGQKDRLLEKLDLHCFPLES-----LPNWLSG--L-NLRKLYIRGGQLRS-----LQGDTHKKYSTVKVLRL 647 (704)
Q Consensus 581 ~~~~l~~~~~~lp~~L~~L~Ls~~~l~~-----lP~~l~~--l-~L~~L~Ls~n~l~~-----lp~~~~~~f~~L~~L~L 647 (704)
....+|..+..+ ++|++|+|++|.+.. +|.++.. + +|++|+|++|.+.. +|......+++|+.|+|
T Consensus 232 g~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 232 GSSALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 001123344455 489999999998865 3566532 5 89999999999966 66655455799999999
Q ss_pred CCCcccccc--cccccCcCCCccEEeeec
Q 041391 648 RYLNELNVN--WRELQALFPDLEYLEKFN 674 (704)
Q Consensus 648 ~~l~~L~l~--~~~l~~~~p~L~~L~i~~ 674 (704)
++++.-... ...+...+|.++.+.+..
T Consensus 311 ~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 311 NGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred cCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 887644322 122335567776666544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.5e-16 Score=160.40 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=115.0
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceecc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKG 494 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~ 494 (704)
.+++++++++ .++.+|..+. .+|++|+|++|......+..+.++++|++|++++|.+. .+|. .+..+++|++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L-- 90 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL-- 90 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE--
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE--
Confidence 3566666664 4556665443 46677777766433322335666777777777776644 3333 34566677777
Q ss_pred cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH
Q 041391 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE 574 (704)
Q Consensus 495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~ 574 (704)
++++|.+....+.....+++|+.|++++|.+....+ ..+..+++|++|+|++|.+..
T Consensus 91 ----~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~---------------- 147 (270)
T 2o6q_A 91 ----WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQS---------------- 147 (270)
T ss_dssp ----ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCC----------------
T ss_pred ----ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCCc----------------
Confidence 466666665554433266677777777666654332 345666677777776666432
Q ss_pred hhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 575 DEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 575 ~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
++. .+..+ ++|+.|+|++|.+..+|.. +..+ +|++|+|++|.+..++...+..+++|+.|+|.+++
T Consensus 148 ----------~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 148 ----------LPKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ----------CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------cCHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 111 13333 3677777777666666543 4444 67777777777766666555556667777666654
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=2.9e-16 Score=165.19 Aligned_cols=191 Identities=22% Similarity=0.269 Sum_probs=157.3
Q ss_pred ccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391 411 LKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~ 490 (704)
+..+++|++|++++| .+..+| .+..+++|++|+|++| .+..+|. +..+++|++|++++|.+. .+| .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCC
Confidence 346789999999998 577787 4999999999999998 5566666 999999999999999854 454 588999999
Q ss_pred eecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccc
Q 041391 491 VLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHN 570 (704)
Q Consensus 491 ~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 570 (704)
+| ++++|.+... +.+. .+++|+.|++++|.+....+ +..+++|+.|++++|.+..
T Consensus 111 ~L------~l~~n~l~~~-~~l~-~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~------------ 165 (308)
T 1h6u_A 111 TL------DLTSTQITDV-TPLA-GLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSD------------ 165 (308)
T ss_dssp EE------ECTTSCCCCC-GGGT-TCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCC------------
T ss_pred EE------ECCCCCCCCc-hhhc-CCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCC------------
Confidence 99 6999987764 4577 99999999999998875322 7899999999999998542
Q ss_pred hhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391 571 KKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649 (704)
Q Consensus 571 ~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~ 649 (704)
++. +..+ ++|+.|++++|.+..+|. +..+ +|++|+|++|.+..++. ...+++|+.|+|++
T Consensus 166 --------------~~~-l~~l-~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 166 --------------LTP-LANL-SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226 (308)
T ss_dssp --------------CGG-GTTC-TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred --------------Chh-hcCC-CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccC
Confidence 222 4445 489999999999998876 5556 99999999999988874 56689999999987
Q ss_pred Cc
Q 041391 650 LN 651 (704)
Q Consensus 650 l~ 651 (704)
++
T Consensus 227 N~ 228 (308)
T 1h6u_A 227 QT 228 (308)
T ss_dssp EE
T ss_pred Ce
Confidence 65
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=3.4e-16 Score=163.15 Aligned_cols=199 Identities=20% Similarity=0.152 Sum_probs=163.3
Q ss_pred hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCc
Q 041391 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSEL 489 (704)
Q Consensus 410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L 489 (704)
.+.++++|+.++++++ .++.+|..+. .+|++|+|++|......|..+..+++|++|++++|.+. .+|. .+.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTC
T ss_pred cccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcC
Confidence 3678899999999996 6788987664 78999999999766556778999999999999999865 4454 3789999
Q ss_pred ceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccccc
Q 041391 490 QVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEH 569 (704)
Q Consensus 490 ~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 569 (704)
++| ++++|.+...+..+. .+++|+.|++++|++....+ ..|..+++|+.|+|++|.+..
T Consensus 80 ~~L------~Ls~N~l~~l~~~~~-~l~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~~----------- 138 (290)
T 1p9a_G 80 GTL------DLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELKT----------- 138 (290)
T ss_dssp CEE------ECCSSCCSSCCCCTT-TCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCCC-----------
T ss_pred CEE------ECCCCcCCcCchhhc-cCCCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCCc-----------
Confidence 999 699999886666666 89999999999999875433 468899999999999998643
Q ss_pred chhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEe
Q 041391 570 NKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLR 646 (704)
Q Consensus 570 ~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~ 646 (704)
+|. .+..+ ++|+.|+|++|.+..+|..+ ..+ +|+.|+|++|.+..+|..... +++|+.|.
T Consensus 139 ---------------~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~ 201 (290)
T 1p9a_G 139 ---------------LPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAF 201 (290)
T ss_dssp ---------------CCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEE
T ss_pred ---------------cChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEE
Confidence 222 23444 59999999999999998765 446 999999999999999987665 57899999
Q ss_pred cCCCc
Q 041391 647 LRYLN 651 (704)
Q Consensus 647 L~~l~ 651 (704)
|.+++
T Consensus 202 L~~Np 206 (290)
T 1p9a_G 202 LHGNP 206 (290)
T ss_dssp CCSCC
T ss_pred eCCCC
Confidence 98755
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=1.2e-17 Score=181.38 Aligned_cols=244 Identities=19% Similarity=0.150 Sum_probs=178.3
Q ss_pred chhhHhccCCcccceeeeeccCCCCC----CchhhhccccCcEEeeeccc---CCCcCCccc-------cccCCCcEEEc
Q 041391 405 SKFLKELKNMSALRLLSLQGVYGIRE----IPSSIANLSNLRVLDLRCCY---YLTKLPKGL-------DSLKKLTYLDI 470 (704)
Q Consensus 405 ~~lp~~l~~L~~Lr~L~Ls~n~~l~~----lP~~l~~L~~L~~LdLs~c~---~l~~lP~~i-------~~L~~L~~L~L 470 (704)
..++..+..+++|++|+|++|..... ++..+..+++|++|+|++|. ..+.+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 35677888999999999999854433 33446789999999999973 223556555 68899999999
Q ss_pred cCccccc----ccCccCCCCCCcceecccccccCCCCCCccchh-----hHHhCC---------CCCcEEEEEeeCCC-C
Q 041391 471 SECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICTLE-----DLGNSL---------KELRKLSIYVNNNA-I 531 (704)
Q Consensus 471 s~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~-----~l~~~L---------~~L~~L~L~~n~~~-~ 531 (704)
++|.+.. .+|..+..+++|++| ++++|.+....+ .+. .+ ++|+.|++++|.+. .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L------~L~~n~l~~~~~~~l~~~l~-~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHL------YLHNNGLGPQAGAKIARALQ-ELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEE------ECCSSCCHHHHHHHHHHHHH-HHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEE------ECcCCCCCHHHHHHHHHHHH-HHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 9999776 477778899999999 699998764322 222 44 89999999999987 4
Q ss_pred chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCC-----
Q 041391 532 PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPL----- 606 (704)
Q Consensus 532 ~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l----- 606 (704)
.++.+...+..+++|++|++++|.+... ... . .++..+..+ ++|+.|+|++|.+
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~---~--------l~~~~l~~~-~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIE---H--------LLLEGLAYC-QELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHH---------HHH---H--------HHHTTGGGC-TTCCEEECCSSCCHHHHH
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHh---------HHH---H--------HHHHHhhcC-CCccEEECcCCCCCcHHH
Confidence 5566667889999999999999985310 000 0 012234455 4999999999998
Q ss_pred CCCcccCCCC-CeeEEEEEcCCCCCc-----CCCc-cCCCCCcCEEecCCCccccccccccc----CcCCCccEEeeecC
Q 041391 607 ESLPNWLSGL-NLRKLYIRGGQLRSL-----QGDT-HKKYSTVKVLRLRYLNELNVNWRELQ----ALFPDLEYLEKFNC 675 (704)
Q Consensus 607 ~~lP~~l~~l-~L~~L~Ls~n~l~~l-----p~~~-~~~f~~L~~L~L~~l~~L~l~~~~l~----~~~p~L~~L~i~~C 675 (704)
..+|.++..+ +|++|+|++|.+... +... ...+++|+.|+|+++..-......+. ..+|+|+.|++.+|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 5678878777 999999999998654 2221 12378999999999764321011122 34799999999998
Q ss_pred C
Q 041391 676 P 676 (704)
Q Consensus 676 ~ 676 (704)
+
T Consensus 314 ~ 314 (386)
T 2ca6_A 314 R 314 (386)
T ss_dssp B
T ss_pred c
Confidence 4
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=2.2e-16 Score=159.56 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=23.1
Q ss_pred ceeEEEEEcCC-CCCCcc-cCCCC--CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391 595 LLEKLDLHCFP-LESLPN-WLSGL--NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649 (704)
Q Consensus 595 ~L~~L~Ls~~~-l~~lP~-~l~~l--~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~ 649 (704)
+|+.|+|++|. +..+|. .+..+ +|+.|+|++|++..+|.. .|++|+.|.+.+
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 45555555542 444432 22222 455555555555444433 244444444444
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.1e-17 Score=175.50 Aligned_cols=249 Identities=15% Similarity=0.057 Sum_probs=143.8
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhccCC--cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCc-CCcccc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNM--SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTK-LPKGLD 460 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L--~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~-lP~~i~ 460 (704)
++.|+++++.+. +..+..+ +++++|++++|. +...+..+..+++|++|++++|..... +|..+.
T Consensus 49 ~~~l~l~~~~~~------------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 115 (336)
T 2ast_B 49 WQTLDLTGKNLH------------PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115 (336)
T ss_dssp SSEEECTTCBCC------------HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred heeeccccccCC------------HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHh
Confidence 566777766443 2334444 667777777764 333333366677777777777754433 666677
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCC-CCcc-chhhHHhCCCCCcEEEEEee-CCCCchhhHH
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPN-DKIC-TLEDLGNSLKELRKLSIYVN-NNAIPIEKLS 537 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n-~l~~-~~~~l~~~L~~L~~L~L~~n-~~~~~~~~l~ 537 (704)
.+++|++|++++|.+....|..++.+++|++| ++++| .+.. .++.+...+++|+.|++++| .+.. ..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L------~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~ 187 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL------NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE--KHVQ 187 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE------ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH--HHHH
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE------ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh--HHHH
Confidence 77777777777777665666667777777777 46666 4443 23442226777777777777 5542 2234
Q ss_pred HHhccCC-CccEEEEEecC--CCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCC-CC-CCccc
Q 041391 538 ESLEKFK-NLLKLKIAWGA--GYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFP-LE-SLPNW 612 (704)
Q Consensus 538 ~~L~~l~-~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~-l~-~lP~~ 612 (704)
..+..++ +|++|++++|. +.. ..++..+..+ ++|+.|+|++|. +. ..+..
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~------------------------~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQK------------------------SDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCH------------------------HHHHHHHHHC-TTCSEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCH------------------------HHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHH
Confidence 5566777 77777777763 110 0012222334 377788887776 33 34455
Q ss_pred CCCC-CeeEEEEEcCC-CCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCCCCCCCC
Q 041391 613 LSGL-NLRKLYIRGGQ-LRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPMISFFPC 683 (704)
Q Consensus 613 l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~L~~lP~ 683 (704)
+..+ +|++|+|++|. +..........+++|+.|+|.+| + ....+......|+.|++. |+.++.+..
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i--~~~~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--V--PDGTLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--S--CTTCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--c--CHHHHHHHHhhCcceEEe-cccCccccC
Confidence 5555 88888888875 21111112345788888888877 2 222222111234444564 556665443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=8.2e-16 Score=155.32 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=123.1
Q ss_pred cCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCC-CCCccchhh-HHhC
Q 041391 440 NLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKP-NDKICTLED-LGNS 515 (704)
Q Consensus 440 ~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~-n~l~~~~~~-l~~~ 515 (704)
+|++|++++|.. ..+|. .+..+++|++|++++|.....+| ..+..+++|++| ++++ |.+....+. +. .
T Consensus 32 ~l~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L------~l~~~n~l~~i~~~~f~-~ 103 (239)
T 2xwt_C 32 STQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI------EIRNTRNLTYIDPDALK-E 103 (239)
T ss_dssp TCCEEEEESCCC-SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE------EEEEETTCCEECTTSEE-C
T ss_pred cccEEEEeCCcc-eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE------ECCCCCCeeEcCHHHhC-C
Confidence 455555555432 22322 45555555555555554122222 234555555555 3444 444443332 33 6
Q ss_pred CCCCcEEEEEeeCCCCchhhHHHHhccCCCcc---EEEEEec-CCCCCCCCcccccccchhhHhhHhhhcCCCCC-Cccc
Q 041391 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLL---KLKIAWG-AGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFG 590 (704)
Q Consensus 516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~ 590 (704)
+++|+.|++++|.+.. ++. +..+++|+ .|++++| .+.. ++ ..+.
T Consensus 104 l~~L~~L~l~~n~l~~-lp~----~~~l~~L~~L~~L~l~~N~~l~~--------------------------i~~~~~~ 152 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKM-FPD----LTKVYSTDIFFILEITDNPYMTS--------------------------IPVNAFQ 152 (239)
T ss_dssp CTTCCEEEEEEECCCS-CCC----CTTCCBCCSEEEEEEESCTTCCE--------------------------ECTTTTT
T ss_pred CCCCCEEeCCCCCCcc-ccc----cccccccccccEEECCCCcchhh--------------------------cCccccc
Confidence 6777788888877654 332 55666666 8888888 5421 22 2244
Q ss_pred cccccee-EEEEEcCCCCCCcccCCCC-CeeEEEEEcCC-CCCcCCCccCCC-CCcCEEecCCCcccccccccccCcCCC
Q 041391 591 QKDRLLE-KLDLHCFPLESLPNWLSGL-NLRKLYIRGGQ-LRSLQGDTHKKY-STVKVLRLRYLNELNVNWRELQALFPD 666 (704)
Q Consensus 591 ~lp~~L~-~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~-l~~lp~~~~~~f-~~L~~L~L~~l~~L~l~~~~l~~~~p~ 666 (704)
.+ ++|+ .|++++|.+..+|...... +|+.|+|++|+ ++.++...+..+ ++|+.|+|+++..-.+. ...|++
T Consensus 153 ~l-~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~----~~~~~~ 227 (239)
T 2xwt_C 153 GL-CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP----SKGLEH 227 (239)
T ss_dssp TT-BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC----CTTCTT
T ss_pred ch-hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC----hhHhcc
Confidence 45 4899 9999999999888776665 99999999995 999988877778 99999999885432211 136899
Q ss_pred ccEEeeecCCCC
Q 041391 667 LEYLEKFNCPMI 678 (704)
Q Consensus 667 L~~L~i~~C~~L 678 (704)
|+.|.+.+|..|
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 999999998764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=2.4e-15 Score=155.17 Aligned_cols=179 Identities=21% Similarity=0.278 Sum_probs=140.8
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIAN 437 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~ 437 (704)
.++.+......+..+ ..+..+++|++|++++|.++. + ..+..+++|++|+|++|. +..+| ..+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~----------~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD----------I-SALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC----------C-GGGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC----------c-hhhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 455555555544433 237889999999999998763 2 368899999999999985 44554 45799
Q ss_pred cccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCC
Q 041391 438 LSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLK 517 (704)
Q Consensus 438 L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~ 517 (704)
+++|++|+|++|...+..|..++.+++|++|++++|.+.+..|..++.+++|++| ++++|.+.+..+.....++
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL------DLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCT
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE------ECCCCCcCccCHHHhcCCc
Confidence 9999999999986555445558999999999999998775555557899999999 6999998877766533899
Q ss_pred CCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC
Q 041391 518 ELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC 560 (704)
Q Consensus 518 ~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~ 560 (704)
+|+.|++++|.+.+..+ ..+..+++|+.|++++|.+...+
T Consensus 182 ~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCEEECCCCcCCccCH---HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999876544 45788999999999999865443
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.7e-16 Score=170.83 Aligned_cols=251 Identities=16% Similarity=0.126 Sum_probs=174.7
Q ss_pred CCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhcc-----ccC
Q 041391 368 EQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANL-----SNL 441 (704)
Q Consensus 368 ~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L-----~~L 441 (704)
+.+....+.++...++|++|+|++|.++... ...+...+..++ +|++|+|++|......+..+..+ ++|
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSIS-----TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGSC-----HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChHH-----HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444455666777778999999999876432 123447788888 99999999996555556667775 999
Q ss_pred cEEeeecccCCCcCCccccc----c-CCCcEEEccCcccccccCcc----CCC-CCCcceecccccccCCCCCCccc---
Q 041391 442 RVLDLRCCYYLTKLPKGLDS----L-KKLTYLDISECYLIEYMPKE----LSS-LSELQVLKGFLVTDAKPNDKICT--- 508 (704)
Q Consensus 442 ~~LdLs~c~~l~~lP~~i~~----L-~~L~~L~Ls~n~~~~~lP~~----i~~-L~~L~~L~~~~~~~ls~n~l~~~--- 508 (704)
++|+|++|......+..+.. + ++|++|++++|.+....+.. +.. .++|++| ++++|.+...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L------~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL------NLRGNDLGIKSSD 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE------ECTTSCGGGSCHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE------EccCCcCCHHHHH
Confidence 99999999655555554444 4 89999999999976544433 334 3689999 6999988742
Q ss_pred -h-hhHHhCCC-CCcEEEEEeeCCCCch-hhHHHHhccC-CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391 509 -L-EDLGNSLK-ELRKLSIYVNNNAIPI-EKLSESLEKF-KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583 (704)
Q Consensus 509 -~-~~l~~~L~-~L~~L~L~~n~~~~~~-~~l~~~L~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (704)
+ ..+. .++ +|+.|++++|.+.... ..+...+..+ ++|+.|+|++|.+..... .
T Consensus 157 ~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---------------------~ 214 (362)
T 3goz_A 157 ELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---------------------A 214 (362)
T ss_dssp HHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------------H
T ss_pred HHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------------H
Confidence 2 3344 555 9999999999886443 3444567777 599999999998532100 0
Q ss_pred CCCCcccccccceeEEEEEcCCCCCCcc-----cCCCC-CeeEEEEEcCCCCCcCCC-------ccCCCCCcCEEecCCC
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLESLPN-----WLSGL-NLRKLYIRGGQLRSLQGD-------THKKYSTVKVLRLRYL 650 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~-----~l~~l-~L~~L~Ls~n~l~~lp~~-------~~~~f~~L~~L~L~~l 650 (704)
.++..+...+++|++|+|++|.+...+. .+..+ +|+.|+|++|.+..+... ....+++|+.|+|+++
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 1223333434589999999999877542 34445 999999999986444422 2335677888888776
Q ss_pred c
Q 041391 651 N 651 (704)
Q Consensus 651 ~ 651 (704)
+
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 5
No 85
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.62 E-value=8.2e-16 Score=191.25 Aligned_cols=145 Identities=11% Similarity=0.124 Sum_probs=117.0
Q ss_pred hhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhH-----
Q 041391 148 HIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEF----- 222 (704)
Q Consensus 148 ~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~----- 222 (704)
+.++|+||+..|+.. .+++.+++++|+++|+|+||| |..+|+.|+.++ ..|++.
T Consensus 288 ~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLa---------------l~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 288 REKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLV---------------VSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp HHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHH---------------HHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHH---------------HHHHHHHhhcCh--hHHHHHHHHHh
Confidence 456799999999644 346677899999999999999 666666665442 234322
Q ss_pred ---------------HHHHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhccccccc
Q 041391 223 ---------------MEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDD 287 (704)
Q Consensus 223 ---------------~~i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~ 287 (704)
..+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------------- 407 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------------- 407 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------------
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------------
Confidence 2388899999999999999999999999999999999999999544
Q ss_pred CHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhcCCC
Q 041391 288 TQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSRKPE 338 (704)
Q Consensus 288 ~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~~~e 338 (704)
++.++.++++|+++|||+....+ ...+|+|||++|++++..+.++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~----~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNG----KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESS----SSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEecCC----CceEEEecHHHHHHHHhhhhHH
Confidence 34578899999999999976532 3347999999999999987654
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=5.3e-17 Score=174.81 Aligned_cols=254 Identities=18% Similarity=0.110 Sum_probs=178.4
Q ss_pred EEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-----hhhhccc-cCcEEeeecccCCCcCCccc
Q 041391 386 VLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-----SSIANLS-NLRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 386 ~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-----~~l~~L~-~L~~LdLs~c~~l~~lP~~i 459 (704)
+++++.|.+++ .+|..+....+|++|+|++|. ++..+ ..+.+++ +|++|+|++|......+..+
T Consensus 2 ~~~ls~n~~~~---------~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 2 NYKLTLHPGSN---------PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EEECCCCTTCC---------HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ccccccccchH---------HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 45777886653 456666677779999999985 55554 5678888 99999999996666656677
Q ss_pred ccc-----CCCcEEEccCcccccccCcc----CCCC-CCcceecccccccCCCCCCccchh-hHH---hC-CCCCcEEEE
Q 041391 460 DSL-----KKLTYLDISECYLIEYMPKE----LSSL-SELQVLKGFLVTDAKPNDKICTLE-DLG---NS-LKELRKLSI 524 (704)
Q Consensus 460 ~~L-----~~L~~L~Ls~n~~~~~lP~~----i~~L-~~L~~L~~~~~~~ls~n~l~~~~~-~l~---~~-L~~L~~L~L 524 (704)
..+ ++|++|++++|.+....+.. +..+ ++|++| ++++|.+..... .+. .. .++|+.|++
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L------~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL------DLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE------ECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEE------ECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 775 99999999999977655553 3344 899999 699999876643 222 13 369999999
Q ss_pred EeeCCCCc-hhhHHHHhccCC-CccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEE
Q 041391 525 YVNNNAIP-IEKLSESLEKFK-NLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLH 602 (704)
Q Consensus 525 ~~n~~~~~-~~~l~~~L~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls 602 (704)
++|.+... ...++..+..++ +|++|+|++|.+....+.. +...+...|++|++|+|+
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~---------------------l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE---------------------LAKFLASIPASVTSLDLS 204 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH---------------------HHHHHHTSCTTCCEEECT
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH---------------------HHHHHHhCCCCCCEEECC
Confidence 99987643 245566777776 9999999999853211000 001222333589999999
Q ss_pred cCCCCC-----CcccCCCC--CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCcccccccc---ccc---CcCC
Q 041391 603 CFPLES-----LPNWLSGL--NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWR---ELQ---ALFP 665 (704)
Q Consensus 603 ~~~l~~-----lP~~l~~l--~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~---~l~---~~~p 665 (704)
+|.+.. ++..+... +|++|+|++|.+...+. .....+++|+.|+|+++..-.+... .+. ..++
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 999876 56655543 89999999999976654 2345678999999988762111111 111 3556
Q ss_pred CccEEeeecCC
Q 041391 666 DLEYLEKFNCP 676 (704)
Q Consensus 666 ~L~~L~i~~C~ 676 (704)
+|+.|++.+++
T Consensus 285 ~L~~LdL~~N~ 295 (362)
T 3goz_A 285 KIILVDKNGKE 295 (362)
T ss_dssp EEEEECTTSCB
T ss_pred ceEEEecCCCc
Confidence 77888888774
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.6e-15 Score=159.67 Aligned_cols=237 Identities=19% Similarity=0.110 Sum_probs=161.4
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSL 462 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L 462 (704)
++++.+++.++ ++|..+ .+++++|+|++| .++.+|. .|.+|++|++|+|++|...+.+|. .|.++
T Consensus 12 ~~v~C~~~~Lt----------~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVT----------EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCC----------SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCCCC----------ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 56777777665 456555 367899999997 5777875 578899999999999877777765 46788
Q ss_pred CCCcE-EEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhc
Q 041391 463 KKLTY-LDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLE 541 (704)
Q Consensus 463 ~~L~~-L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~ 541 (704)
++|+. +.+.+|.+....|..+..+++|++| ++++|.+....+.......++..|++.++.....++. ..+.
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L------~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--~~f~ 150 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYL------LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFV 150 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSBCCCTTCCEE------EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--TSST
T ss_pred hhhhhhhcccCCcccccCchhhhhccccccc------cccccccccCCchhhcccchhhhhhhccccccccccc--cchh
Confidence 88776 4555566554446668889999998 5777777665543222556677777766433222221 2344
Q ss_pred cC-CCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEE-cCCCCCCccc-CCCC-C
Q 041391 542 KF-KNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLH-CFPLESLPNW-LSGL-N 617 (704)
Q Consensus 542 ~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls-~~~l~~lP~~-l~~l-~ 617 (704)
.+ ..++.|++++|.+.. ++...... .+|++|.+. +|.++.+|.. +..+ +
T Consensus 151 ~~~~~l~~L~L~~N~i~~--------------------------i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQE--------------------------IHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp TSBSSCEEEECCSSCCCE--------------------------ECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred hcchhhhhhccccccccC--------------------------CChhhccc-cchhHHhhccCCcccCCCHHHhccCcc
Confidence 44 368888888887532 33333344 379999997 5778899865 4555 9
Q ss_pred eeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeec
Q 041391 618 LRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFN 674 (704)
Q Consensus 618 L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~ 674 (704)
|++|+|++|+++.+|... |.+|+.|.+.++..+. ....+ ..+++|+.+++.+
T Consensus 204 L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~-~lP~l-~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSYG---LENLKKLRARSTYNLK-KLPTL-EKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCC-CCCCT-TTCCSCCEEECSC
T ss_pred cchhhcCCCCcCccChhh---hccchHhhhccCCCcC-cCCCc-hhCcChhhCcCCC
Confidence 999999999999998754 5566666666665554 11122 4688888888854
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=2.1e-17 Score=183.41 Aligned_cols=285 Identities=17% Similarity=0.056 Sum_probs=167.1
Q ss_pred eeeeecccCCCCC----cchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHh-ccCCcccceeeeeccCCCC----C
Q 041391 360 VSALVNVSEQFPD----FQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKE-LKNMSALRLLSLQGVYGIR----E 430 (704)
Q Consensus 360 lr~l~~~~~~~~~----~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~-l~~L~~Lr~L~Ls~n~~l~----~ 430 (704)
++.+....+.+.. ..+..|..+++|++|++++|.++... ...+... ....++|++|+|++|.... .
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-----~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-----LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-----HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH-----HHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 4444444444442 22566788888888888888664211 1122222 2235678888888874332 2
Q ss_pred CchhhhccccCcEEeeecccCCCcCCcccc-----ccCCCcEEEccCcccccc----cCccCCCCCCcceecccccccCC
Q 041391 431 IPSSIANLSNLRVLDLRCCYYLTKLPKGLD-----SLKKLTYLDISECYLIEY----MPKELSSLSELQVLKGFLVTDAK 501 (704)
Q Consensus 431 lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~-----~L~~L~~L~Ls~n~~~~~----lP~~i~~L~~L~~L~~~~~~~ls 501 (704)
++..+..+++|++|++++|......+..+. .+++|++|++++|.+... ++..+..+++|++| +++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L------~Ls 235 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL------ALG 235 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE------ECC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE------ecc
Confidence 355567778888888888754332222332 255888888888876542 45666677888888 577
Q ss_pred CCCCccch-----hhHHhCCCCCcEEEEEeeCCCCc-hhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391 502 PNDKICTL-----EDLGNSLKELRKLSIYVNNNAIP-IEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575 (704)
Q Consensus 502 ~n~l~~~~-----~~l~~~L~~L~~L~L~~n~~~~~-~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~ 575 (704)
+|.+.... +.+...+++|+.|++++|.+... ...++..+..+++|++|++++|.+.... ...
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~------------~~~ 303 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG------------ARL 303 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH------------HHH
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH------------HHH
Confidence 77765431 22322477888888888876532 1235566777888888888887742100 000
Q ss_pred hHhhhcCCCCCCcccccccceeEEEEEcCCCCC-----CcccCCCC-CeeEEEEEcCCCCCcCC-----CccCCCCCcCE
Q 041391 576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLES-----LPNWLSGL-NLRKLYIRGGQLRSLQG-----DTHKKYSTVKV 644 (704)
Q Consensus 576 ~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~-----lP~~l~~l-~L~~L~Ls~n~l~~lp~-----~~~~~f~~L~~ 644 (704)
+...+...+++|++|+|++|.+.. +|.++... +|++|+|++|.+..... ......++|+.
T Consensus 304 ---------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 304 ---------LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp ---------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred ---------HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 001111122478888888877653 34455444 88888888887643211 11122567888
Q ss_pred EecCCCccccccccccc---CcCCCccEEeeecCC
Q 041391 645 LRLRYLNELNVNWRELQ---ALFPDLEYLEKFNCP 676 (704)
Q Consensus 645 L~L~~l~~L~l~~~~l~---~~~p~L~~L~i~~C~ 676 (704)
|+|++|..-+.....+. ..+++|++|++.+|+
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 88877643211111111 346788888888773
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.7e-15 Score=152.91 Aligned_cols=132 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
..+++|+.|++++|.++. ...+..+++|++|+|++|. +..++ .++++++|++|++++|...+..|..
T Consensus 38 ~~l~~L~~L~l~~~~i~~-----------~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-----------VQGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccceeeeeeCCCCccc-----------ccccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhH
Confidence 345556666666665432 1235556666666666653 34443 3566666666666665333333333
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN 529 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~ 529 (704)
+..+++|++|++++|.+.+..|..++.+++|++| ++++|.+....+.....+++|+.|++++|.+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL------NLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE------ECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 4556666666666665443333334555555555 3555544443332211444444444444433
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.1e-15 Score=161.51 Aligned_cols=218 Identities=19% Similarity=0.144 Sum_probs=152.4
Q ss_pred CCccEEEcCCCCCcccchhhhccchhh-HhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcC-Ccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFL-KELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKL-PKG 458 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp-~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~l-P~~ 458 (704)
++++.|+|++|.++ .+| ..|.++++|++|+|++|...+.+|. .|.++++|+.+.+.+++.+..+ |..
T Consensus 30 ~~l~~L~Ls~N~i~----------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLR----------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCCCS----------EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCcCC----------CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 68999999999876 345 4689999999999999976676764 5788988876544443455555 566
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCC-CCCccchh-hHHhCC-CCCcEEEEEeeCCCCchhh
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKP-NDKICTLE-DLGNSL-KELRKLSIYVNNNAIPIEK 535 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~-n~l~~~~~-~l~~~L-~~L~~L~L~~n~~~~~~~~ 535 (704)
+..+++|++|++++|.+....+..+....++..|. +.+ +.+....+ .+. .+ ..++.|++++|.+.. ++
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~------l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~i~~-i~- 170 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD------IQDNINIHTIERNSFV-GLSFESVILWLNKNGIQE-IH- 170 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEE------EESCTTCCEECTTSST-TSBSSCEEEECCSSCCCE-EC-
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhh------hccccccccccccchh-hcchhhhhhccccccccC-CC-
Confidence 89999999999999986544444455566676773 433 34443333 233 44 468899999998763 22
Q ss_pred HHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcccCC
Q 041391 536 LSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNWLS 614 (704)
Q Consensus 536 l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~l~ 614 (704)
.......+|+.|.+.+++.. +.+|. .+..+ ++|+.|+|++|.+..+|.+..
T Consensus 171 --~~~f~~~~L~~l~l~~~n~l-------------------------~~i~~~~f~~l-~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 171 --NSAFNGTQLDELNLSDNNNL-------------------------EELPNDVFHGA-SGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp --TTSSTTEEEEEEECTTCTTC-------------------------CCCCTTTTTTE-ECCSEEECTTSCCCCCCSSSC
T ss_pred --hhhccccchhHHhhccCCcc-------------------------cCCCHHHhccC-cccchhhcCCCCcCccChhhh
Confidence 33345568899988765422 23443 34455 599999999999999997542
Q ss_pred CCCeeEEEEEcC-CCCCcCCCccCCCCCcCEEecCC
Q 041391 615 GLNLRKLYIRGG-QLRSLQGDTHKKYSTVKVLRLRY 649 (704)
Q Consensus 615 ~l~L~~L~Ls~n-~l~~lp~~~~~~f~~L~~L~L~~ 649 (704)
. +|+.|.+.++ .++.+|. ...|++|+.+.+.+
T Consensus 223 ~-~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 223 E-NLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp T-TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred c-cchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 2 7777776655 4577774 45688999998875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.2e-16 Score=169.78 Aligned_cols=208 Identities=19% Similarity=0.139 Sum_probs=126.5
Q ss_pred hcCCC--CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-CchhhhccccCcEEeeecccCCC
Q 041391 377 WFSNL--KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-IPSSIANLSNLRVLDLRCCYYLT 453 (704)
Q Consensus 377 ~f~~l--~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-lP~~l~~L~~L~~LdLs~c~~l~ 453 (704)
.+..+ +++++|++++|.+.. .+..+..+++|++|+|++|..... +|..+..+++|++|+|++|....
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~ 132 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQ----------PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECS----------CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred HHHhhhhccceEEEcCCccccc----------cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence 34444 677777777775542 223355677777788777753323 66667777778888887776555
Q ss_pred cCCccccccCCCcEEEccCc-cccc-ccCccCCCCCCcceecccccccCCCC-CCccc-hhhHHhCCC-CCcEEEEEeeC
Q 041391 454 KLPKGLDSLKKLTYLDISEC-YLIE-YMPKELSSLSELQVLKGFLVTDAKPN-DKICT-LEDLGNSLK-ELRKLSIYVNN 528 (704)
Q Consensus 454 ~lP~~i~~L~~L~~L~Ls~n-~~~~-~lP~~i~~L~~L~~L~~~~~~~ls~n-~l~~~-~~~l~~~L~-~L~~L~L~~n~ 528 (704)
..|..++.+++|++|++++| .+.. .+|..+..+++|++| ++++| .+... ++.+...++ +|+.|++++|.
T Consensus 133 ~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L------~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 133 PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE------ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE------cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66667777777888887777 3332 255556677777777 47776 55542 333222677 78888887774
Q ss_pred CCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCC
Q 041391 529 NAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLES 608 (704)
Q Consensus 529 ~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~ 608 (704)
.......++..+..+++|+.|++++|...+. ..+..+..+ ++|++|+|++|. ..
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------------~~~~~l~~l-~~L~~L~l~~~~-~~ 260 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------------------------DCFQEFFQL-NYLQHLSLSRCY-DI 260 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------------------------GGGGGGGGC-TTCCEEECTTCT-TC
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------------------------HHHHHHhCC-CCCCEeeCCCCC-CC
Confidence 2111234445666777888888877762110 011233344 477888887774 22
Q ss_pred Ccc---cCCCC-CeeEEEEEcC
Q 041391 609 LPN---WLSGL-NLRKLYIRGG 626 (704)
Q Consensus 609 lP~---~l~~l-~L~~L~Ls~n 626 (704)
.+. .+..+ +|+.|+|++|
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHHHHhcCCCCCEEeccCc
Confidence 222 23444 7888888777
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=5.3e-17 Score=180.17 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=45.9
Q ss_pred cceeEEEEEcCCCCC-----CcccCCCC--CeeEEEEEcCCCCCcCC----CccCCCCCcCEEecCCCccccccccccc-
Q 041391 594 RLLEKLDLHCFPLES-----LPNWLSGL--NLRKLYIRGGQLRSLQG----DTHKKYSTVKVLRLRYLNELNVNWRELQ- 661 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~~-----lP~~l~~l--~L~~L~Ls~n~l~~lp~----~~~~~f~~L~~L~L~~l~~L~l~~~~l~- 661 (704)
++|++|+|++|.+.. ++..+... +|++|+|++|.+..... .....+++|+.|+|+++..-+.....+.
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 367777777766532 22222221 67777777777643211 1122357788888877642221111111
Q ss_pred ---CcCCCccEEeeecCCCCC
Q 041391 662 ---ALFPDLEYLEKFNCPMIS 679 (704)
Q Consensus 662 ---~~~p~L~~L~i~~C~~L~ 679 (704)
...++|+.|++.+| .++
T Consensus 364 ~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCC
T ss_pred HHcCCCCceEEEECCCC-CCC
Confidence 22678999999888 454
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1e-14 Score=148.41 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=49.6
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~ 495 (704)
+|++|+|++|......|..+.++++|++|+|++|...+..|..+..+++|++|++++|.+....+..++.+++|++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--- 112 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL--- 112 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE---
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE---
Confidence 45555555553333333345555555555555553333333334555555555555555443333334455555555
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCC
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNN 529 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~ 529 (704)
++++|.+....+.....+++|+.|++++|.+
T Consensus 113 ---~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 113 ---YLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ---EcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 3444444433333211444444444444443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.1e-14 Score=148.23 Aligned_cols=176 Identities=22% Similarity=0.265 Sum_probs=131.2
Q ss_pred cccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecc
Q 041391 415 SALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKG 494 (704)
Q Consensus 415 ~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~ 494 (704)
...++++++++ .+..+|..+. .+|+.|+|++|...+..|..+.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-- 88 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-- 88 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE--
Confidence 45788899886 6778887665 689999999986666666678999999999999998877666668889999999
Q ss_pred cccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhH
Q 041391 495 FLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQE 574 (704)
Q Consensus 495 ~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~ 574 (704)
++++|.+....+.....+++|+.|++++|.+....+ ..+..+++|+.|+|++|.+..
T Consensus 89 ----~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~---------------- 145 (251)
T 3m19_A 89 ----GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS---GVFDRLTKLKELRLNTNQLQS---------------- 145 (251)
T ss_dssp ----ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCC----------------
T ss_pred ----ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh---hHhccCCcccEEECcCCcCCc----------------
Confidence 588888887765543388888888888888764333 346777888888888877532
Q ss_pred hhHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCcc-cCCCC-CeeEEEEEcCCCC
Q 041391 575 DEAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPN-WLSGL-NLRKLYIRGGQLR 629 (704)
Q Consensus 575 ~~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~-~l~~l-~L~~L~Ls~n~l~ 629 (704)
++. .+..+ ++|+.|+|++|.+..+|. .+..+ +|+.|+|++|++.
T Consensus 146 ----------~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 146 ----------IPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----------CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ----------cCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 222 34444 378888888887777765 44555 7888888888763
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=7.6e-15 Score=143.72 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=129.0
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
..+++|+.|++++|.++ .+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..
T Consensus 41 ~~l~~L~~L~l~~n~i~----------~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT----------DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEESSCCS----------CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccCCCcc----------ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChh
Confidence 56778999999999775 345 5888999999999998 566665 5999999999999999776667889
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
+..+++|++|++++|.+....|..++.+++|++| ++++|.....++.+. .+++|+.|++++|.+... +
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L------~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~~-~---- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI------DLSYNGAITDIMPLK-TLPELKSLNIQFDGVHDY-R---- 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE------ECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCCC-T----
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE------EccCCCCccccHhhc-CCCCCCEEECCCCCCcCh-H----
Confidence 9999999999999999887788889999999999 599998455566787 999999999999988642 2
Q ss_pred HhccCCCccEEEEEecCCC
Q 041391 539 SLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l~ 557 (704)
.+..+++|+.|++++|.+.
T Consensus 176 ~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TGGGCSSCCEEEECBC---
T ss_pred HhccCCCCCEEEeeCcccC
Confidence 5788999999999999853
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.3e-14 Score=151.21 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=69.3
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
..+++|+.|++++|.++. + +.+..+++|++|+|++| .+..++. +.++++|++|++++|. +..+| .
T Consensus 43 ~~l~~L~~L~l~~~~i~~----------~-~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS----------V-QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-S 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCC----------C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-G
T ss_pred hhcCcccEEEccCCCccc----------C-hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-h
Confidence 345555555655554431 1 12455555555555555 3444444 5555555555555542 33333 2
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
+..+++|++|++++|.+.. + ..+..+++|++| ++++|.+... +.+. .+++|+.|++++|.+....+
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L------~l~~n~l~~~-~~l~-~l~~L~~L~L~~N~l~~~~~---- 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL------YLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP---- 173 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEE------ECCSSCCCCC-GGGG-GCTTCSEEECCSSCCCCCGG----
T ss_pred hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEE------EccCCcCCcc-hhhc-cCCCCCEEEccCCccccchh----
Confidence 5555555555555554332 2 234445555555 3444444332 3333 44445555554444432211
Q ss_pred HhccCCCccEEEEEecC
Q 041391 539 SLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~ 555 (704)
+..+++|+.|++++|.
T Consensus 174 -l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -GTTCTTCCEEECCSSC
T ss_pred -hcCCCccCEEECCCCc
Confidence 3444444444444444
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.3e-14 Score=149.41 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=107.8
Q ss_pred cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391 412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~ 491 (704)
..+++|++|++++| .+..+|. +..+++|++|++++|. +..++. +..+++|++|++++|.+. .+|. ++.+++|++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCE
Confidence 35666777777776 4555654 6677777777777763 344444 667777777777777643 3333 667777777
Q ss_pred ecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccch
Q 041391 492 LKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNK 571 (704)
Q Consensus 492 L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 571 (704)
| ++++|.+... +.+. .+++|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 117 L------~L~~n~i~~~-~~l~-~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~l~~------------- 170 (291)
T 1h6t_A 117 L------SLEHNGISDI-NGLV-HLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD------------- 170 (291)
T ss_dssp E------ECTTSCCCCC-GGGG-GCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCC-------------
T ss_pred E------ECCCCcCCCC-hhhc-CCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCcccc-------------
Confidence 7 4666665543 5555 677777777777766542 246667777777777766432
Q ss_pred hhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcC
Q 041391 572 KQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQ 632 (704)
Q Consensus 572 ~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp 632 (704)
++. +..+ ++|+.|+|++|.+..+|. +..+ +|+.|++++|++...|
T Consensus 171 -------------~~~-l~~l-~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 171 -------------IVP-LAGL-TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -------------CGG-GTTC-TTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred -------------chh-hcCC-CccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 111 3333 367777777777766654 4555 7777777777664433
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1.8e-14 Score=164.99 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
..+++|+.|++++|.+.. +| .+..+++|++|+|++| .+..+|. +..|++|++|+|++| .+..+| .
T Consensus 40 ~~L~~L~~L~l~~n~i~~----------l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~ 104 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS----------VQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-S 104 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC----------CT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-T
T ss_pred hcCCCCCEEECcCCCCCC----------Ch-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-h
Confidence 445556666666665431 22 3555666666666665 3444444 666666666666665 333343 4
Q ss_pred ccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHH
Q 041391 459 LDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSE 538 (704)
Q Consensus 459 i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~ 538 (704)
+..|++|++|+|++|.+.. +| .+..+++|+.| ++++|.+... +.+. .+++|+.|+|++|.+....+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L------~Ls~N~l~~l-~~l~-~l~~L~~L~Ls~N~l~~~~~---- 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESL------YLGNNKITDI-TVLS-RLTKLDTLSLEDNQISDIVP---- 170 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEE------ECCSSCCCCC-GGGG-SCTTCSEEECCSSCCCCCGG----
T ss_pred hccCCCCCEEEecCCCCCC-Cc-cccCCCccCEE------ECCCCccCCc-hhhc-ccCCCCEEECcCCcCCCchh----
Confidence 5566666666666665432 22 35555666666 3555555443 4444 55566666666555543222
Q ss_pred HhccCCCccEEEEEecCC
Q 041391 539 SLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 539 ~L~~l~~L~~L~Ls~n~l 556 (704)
+..+++|+.|+|++|.+
T Consensus 171 -l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp -GTTCTTCCEEECCSSCC
T ss_pred -hccCCCCCEEECcCCCC
Confidence 45555555665555553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=3.9e-14 Score=160.63 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=119.2
Q ss_pred CccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
+|++|+|++|.++. +|..+ +++|++|+|++| .++.+| ..+++|++|+|++|. +..+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~----------lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS----------LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSC----------CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT-
T ss_pred CccEEEeCCCCCCc----------cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc-
Confidence 78888888887652 34444 267888888887 456777 456788888888874 444776 554
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
+|++|++++|.+.+ +|. .+++|++| ++++|.+.+.+. .+++|+.|++++|.+.+ ++. +.
T Consensus 121 -~L~~L~Ls~N~l~~-lp~---~l~~L~~L------~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~----l~- 179 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTM-LPE---LPALLEYI------NADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE----LP- 179 (571)
T ss_dssp -TCCEEECCSSCCSC-CCC---CCTTCCEE------ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC----CC-
T ss_pred -CCCEEECCCCcCCC-CCC---cCccccEE------eCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch----hh-
Confidence 78888888887554 665 56778888 577777765332 45778888888877664 332 33
Q ss_pred CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCccc----ccccceeEEEEEcCCCCCCcccCCCC-C
Q 041391 543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFG----QKDRLLEKLDLHCFPLESLPNWLSGL-N 617 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~lp~~L~~L~Ls~~~l~~lP~~l~~l-~ 617 (704)
++|+.|+|++|.+.. +|. +. ..+..|+.|+|++|.+..+|.++..+ +
T Consensus 180 -~~L~~L~Ls~N~L~~--------------------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 180 -ESLEALDVSTNLLES--------------------------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231 (571)
T ss_dssp -TTCCEEECCSSCCSS--------------------------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred -CCCCEEECcCCCCCc--------------------------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCC
Confidence 677888887777542 222 11 11123377788777777777777667 7
Q ss_pred eeEEEEEcCCCC
Q 041391 618 LRKLYIRGGQLR 629 (704)
Q Consensus 618 L~~L~Ls~n~l~ 629 (704)
|+.|+|++|.+.
T Consensus 232 L~~L~L~~N~l~ 243 (571)
T 3cvr_A 232 TCTIILEDNPLS 243 (571)
T ss_dssp TEEEECCSSSCC
T ss_pred CCEEEeeCCcCC
Confidence 777888777774
No 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.52 E-value=1.4e-14 Score=168.94 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=107.7
Q ss_pred hhhchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccc-cccchhhH--H
Q 041391 147 DHIRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFR-EKFGFDEF--M 223 (704)
Q Consensus 147 ~~~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~-~~~~w~~~--~ 223 (704)
..-++|+||+++ |+.. ..++..+| |+|+||| |..+|+.|+.+. +.++|+.. .
T Consensus 299 S~eEA~eLF~~~-~g~~------~eeL~~eI---CgGLPLA---------------LkLaGs~Lr~k~~s~eeW~~~~~~ 353 (1221)
T 1vt4_I 299 TPDEVKSLLLKY-LDCR------PQDLPREV---LTTNPRR---------------LSIIAESIRDGLATWDNWKHVNCD 353 (1221)
T ss_dssp CHHHHHHHHHHH-HCCC------TTTHHHHH---CCCCHHH---------------HHHHHHHHHHSCSSHHHHHHCSCH
T ss_pred CHHHHHHHHHHH-cCCC------HHHHHHHH---hCCCHHH---------------HHHHHHHHhCCCCCHHHHhcCChh
Confidence 345689999999 4332 22334444 9999999 888888887763 45566542 3
Q ss_pred HHHHHHHHhhhhchhhh-HHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccCHHHHHHHHHHHHHH
Q 041391 224 EMIINFRNKFRNLKNES-KFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDTQEKNIDDILKELER 302 (704)
Q Consensus 224 ~i~~~L~lSYd~L~~~l-K~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~ 302 (704)
.+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++|. +.++.+|++|++
T Consensus 354 ~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe--------------------edAe~~L~eLvd 413 (1221)
T 1vt4_I 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------------------SDVMVVVNKLHK 413 (1221)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS--------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH--------------------HHHHHHHHHHHh
Confidence 48899999999999999 999999999999999999999999998871 137789999999
Q ss_pred CCCccceeecccCCCcCeEEeCHHHHHHHH
Q 041391 303 EGFIVPVRKKRRKDVNNRFKMDPLARLAVI 332 (704)
Q Consensus 303 rsli~~~~~~~~~~~~~~~~mHDll~dla~ 332 (704)
+|||+... ...+|+|||++++++.
T Consensus 414 RSLLq~d~------~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 414 YSLVEKQP------KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSSBCS------SSSEEBCCCHHHHHHH
T ss_pred hCCEEEeC------CCCEEEehHHHHHHhc
Confidence 99999842 2368999999999764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=4.8e-14 Score=159.89 Aligned_cols=176 Identities=20% Similarity=0.218 Sum_probs=136.0
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~ 495 (704)
+|++|+|++| .++.+|..+ +++|++|+|++| .+..+| ..+++|++|++++|.+.+ +|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L--- 125 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL--- 125 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE---
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE---
Confidence 8999999997 466688766 378999999987 455788 457899999999998665 777 665 88888
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~ 575 (704)
++++|.+.+.+. .+++|+.|++++|.+.+ ++. .+++|+.|+|++|.+..
T Consensus 126 ---~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~------~l~~L~~L~Ls~N~L~~----------------- 174 (571)
T 3cvr_A 126 ---DVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE------LPTSLEVLSVRNNQLTF----------------- 174 (571)
T ss_dssp ---ECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSC-----------------
T ss_pred ---ECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC------cCCCcCEEECCCCCCCC-----------------
Confidence 588888877443 56889999999998765 332 56889999999888532
Q ss_pred hHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCCCe-------eEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391 576 EAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGLNL-------RKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648 (704)
Q Consensus 576 ~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l~L-------~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~ 648 (704)
+|. +. ++|+.|+|++|.+..+|. +.. +| +.|+|++|.++.+|..... +++|+.|+|+
T Consensus 175 ---------lp~-l~---~~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~ 238 (571)
T 3cvr_A 175 ---------LPE-LP---ESLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILE 238 (571)
T ss_dssp ---------CCC-CC---TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECC
T ss_pred ---------cch-hh---CCCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEee
Confidence 444 33 589999999999988887 444 66 9999999999988887666 8899999998
Q ss_pred CCcc
Q 041391 649 YLNE 652 (704)
Q Consensus 649 ~l~~ 652 (704)
+++.
T Consensus 239 ~N~l 242 (571)
T 3cvr_A 239 DNPL 242 (571)
T ss_dssp SSSC
T ss_pred CCcC
Confidence 8653
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=9.1e-14 Score=159.16 Aligned_cols=166 Identities=23% Similarity=0.285 Sum_probs=111.2
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL 438 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L 438 (704)
+++.+....+.+..+. .|..+++|+.|+|++|.++. ++. +..+++|++|+|++| .+..+| .+..+
T Consensus 44 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~----------~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l 108 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD----------IKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDL 108 (605)
T ss_dssp TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC----------CGG-GGGCTTCCEEECCSS-CCCCCT-TSTTC
T ss_pred CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC----------Chh-hccCCCCCEEECcCC-CCCCCh-hhccC
Confidence 4444544444444432 36777788888888776653 222 677777888888876 455565 47777
Q ss_pred ccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCC
Q 041391 439 SNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKE 518 (704)
Q Consensus 439 ~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~ 518 (704)
++|++|+|++|. +..+ ..+..|++|+.|+|++|.+.. + ..++.+++|+.| ++++|.+....+ +. .+++
T Consensus 109 ~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L------~Ls~N~l~~~~~-l~-~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTL------SLEDNQISDIVP-LA-GLTK 176 (605)
T ss_dssp TTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEE------ECCSSCCCCCGG-GT-TCTT
T ss_pred CCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEE------ECcCCcCCCchh-hc-cCCC
Confidence 888888887764 3444 357777788888888777543 3 446777777777 577777766655 65 7778
Q ss_pred CcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391 519 LRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 519 L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l 556 (704)
|+.|+|++|.+... ..+..+++|+.|+|++|.+
T Consensus 177 L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNHISDL-----RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSCCCBC-----GGGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCCCCCC-----hHHccCCCCCEEEccCCcC
Confidence 88888887776542 2467777788888777764
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.3e-13 Score=132.00 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=100.9
Q ss_pred cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391 412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~ 491 (704)
..+++|++|++++| .+..+| .+..+++|++|++++| ....+ ..+..+++|++|++++|.+....|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788999999997 567888 5899999999999998 44444 47888999999999999887767888888999999
Q ss_pred ecccccccCCCCCCccch-hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCC
Q 041391 492 LKGFLVTDAKPNDKICTL-EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAG 556 (704)
Q Consensus 492 L~~~~~~~ls~n~l~~~~-~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l 556 (704)
| ++++|.+.... ..+. .+++|+.|++++|.....++ .+..+++|+.|++++|.+
T Consensus 117 L------~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 L------DISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp E------ECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCC
T ss_pred E------EecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCC
Confidence 8 58888877643 4555 88888888888887222232 467777888888877774
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=3.4e-14 Score=162.65 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=112.7
Q ss_pred hhhcCCCCCccEEEcCCCCCccc------chhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhcc--ccCcEEee
Q 041391 375 SKWFSNLKKVKVLHLGRWKNSAK------HFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANL--SNLRVLDL 446 (704)
Q Consensus 375 ~~~f~~l~~Lr~L~L~~n~l~~~------~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L--~~L~~LdL 446 (704)
+..+..+++|+.|+|+++..... .+-.+....++..+..+++|++|+|++|......+..+..+ .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 44567788899999987632100 00001111233334478999999999985433444556654 45999999
Q ss_pred ecccCCC--cCCccccccCCCcEEEccCcccccc----cCccCCCCCCcceecccccccCCCCCCc----cchhhHHhCC
Q 041391 447 RCCYYLT--KLPKGLDSLKKLTYLDISECYLIEY----MPKELSSLSELQVLKGFLVTDAKPNDKI----CTLEDLGNSL 516 (704)
Q Consensus 447 s~c~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~----lP~~i~~L~~L~~L~~~~~~~ls~n~l~----~~~~~l~~~L 516 (704)
++|.... .++..+..+++|++|++++|.+... ++..+..+++|++| ++++|.+. ..++.+...+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L------~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL------NFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEE------ECTTCCCSSCCHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEE------EeeccCCCccCHHHHHHHHhhC
Confidence 9885321 2333345789999999999976443 33334567889999 58877765 2344444478
Q ss_pred CCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391 517 KELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 517 ~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
++|+.|++++|.+.+ ++..+..+++|+.|.++.+.
T Consensus 220 ~~L~~L~L~~~~~~~----l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE----LVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp TTCCEEECSSCBGGG----GHHHHHHCTTCCEEEECBCC
T ss_pred CCCcEEeccCccHHH----HHHHHhhhhHHHhhcccccc
Confidence 999999999986543 44678888999999998643
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=3.5e-13 Score=135.17 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GL 459 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i 459 (704)
++|++|+|++|.++.+ .|..|..+++|++|+|++|. +..+|. .+.++++|++|+|++|.. ..+|. .+
T Consensus 40 ~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL---------EPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred CCCCEEEcCCCccCcc---------CHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC-CccChhHh
Confidence 5566666666655421 13445556666666666653 344442 345566666666665533 33332 34
Q ss_pred cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~ 530 (704)
..+++|++|++++|.+. .+|..+..+++|++| ++++|.+....+.....+++|+.|++++|.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL------ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE------ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCccc-ccCcccccCCCCCEE------ECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55666666666665533 455555555555555 35555555444332224555555555555544
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=155.04 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=110.8
Q ss_pred hchHHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhH------
Q 041391 149 IRRFEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEF------ 222 (704)
Q Consensus 149 ~~~l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~------ 222 (704)
-++++||...++... ..+.+.+.+|+++|+|+||| |..+|..++..+ ..|+.+
T Consensus 289 ~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLa---------------l~~~a~~l~~~~--~~w~~~l~~l~~ 347 (591)
T 1z6t_A 289 EKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLV---------------VSLIGALLRDFP--NRWEYYLKQLQN 347 (591)
T ss_dssp HHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHH---------------HHHHHHHHHHST--TCHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHH---------------HHHHHHHHhcCc--hhHHHHHHHHHH
Confidence 467899999998532 34456789999999999999 556666555432 234432
Q ss_pred --------------HHHHHHHHHhhhhchhhhHHHHHHhcccCCCCccChHHHHHHHHHCCCCccchhhhhhcccccccC
Q 041391 223 --------------MEMIINFRNKFRNLKNESKFCLWCFTVFPNNAVVRKRLVENWLITEDKNRAEENREEKNKAVEDDT 288 (704)
Q Consensus 223 --------------~~i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~~ 288 (704)
..+..++..||+.||++.|.||++||+||+|+.|+.+.++.+|.++
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------------------- 407 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------------------- 407 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC--------------------
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC--------------------
Confidence 2367799999999999999999999999999999999999999532
Q ss_pred HHHHHHHHHHHHHHCCCccceeecccCCCcCeEEeCHHHHHHHHHhc
Q 041391 289 QEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKMDPLARLAVINSR 335 (704)
Q Consensus 289 ~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~mHDll~dla~~i~ 335 (704)
.+.+..++++|+++|||+....+ ...+|.||++++++++...
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~~----~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRNG----KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEET----TEEEEECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcCeEEecCC----CccEEEEcHHHHHHHHhhh
Confidence 23467899999999999865432 3357999999999999874
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=4.1e-14 Score=161.99 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=54.3
Q ss_pred cceeEEEEEcCC--CC-CCcccCCC-C-CeeEEEEEcCCCCCcC-CCccCCCCCcCEEecCCCcccccc-cccccCcCCC
Q 041391 594 RLLEKLDLHCFP--LE-SLPNWLSG-L-NLRKLYIRGGQLRSLQ-GDTHKKYSTVKVLRLRYLNELNVN-WRELQALFPD 666 (704)
Q Consensus 594 ~~L~~L~Ls~~~--l~-~lP~~l~~-l-~L~~L~Ls~n~l~~lp-~~~~~~f~~L~~L~L~~l~~L~l~-~~~l~~~~p~ 666 (704)
++|++|+|+.|. +. ..+..+.. + +|+.|+|++|.+.... ......+++|+.|+|++|+ +.-. ...+...+|+
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS 514 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSS
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCc
Confidence 478888887543 21 11122222 3 8999999999874321 1223557999999999988 3201 1112246899
Q ss_pred ccEEeeecCCCCCCC
Q 041391 667 LEYLEKFNCPMISFF 681 (704)
Q Consensus 667 L~~L~i~~C~~L~~l 681 (704)
|++|++.+|. ++..
T Consensus 515 L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 515 LRYLWVQGYR-ASMT 528 (592)
T ss_dssp CCEEEEESCB-CCTT
T ss_pred cCeeECcCCc-CCHH
Confidence 9999999996 5543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=2.4e-13 Score=135.51 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=48.9
Q ss_pred hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcccccccCccCCCCCC
Q 041391 410 ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECYLIEYMPKELSSLSE 488 (704)
Q Consensus 410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~ 488 (704)
.|..+++|++|+|++|......|..|.++++|++|+|++|. +..+|.. +..+++|++|++++|.+....|..+..+++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence 34445555555555543222224444555555555555442 2233332 344555555555555444333444444444
Q ss_pred cceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeC
Q 041391 489 LQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNN 528 (704)
Q Consensus 489 L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~ 528 (704)
|++| ++++|.+....+.....+++|+.|++++|.
T Consensus 130 L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 130 LNLL------SLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEE------ECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 4444 344444444333211134444444444443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.3e-12 Score=128.66 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=47.0
Q ss_pred ccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCC
Q 041391 411 LKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSE 488 (704)
Q Consensus 411 l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~ 488 (704)
|..+++|++|+|++|. +..+|. .+..+++|++|+|++|... .+|. .+..+++|++|++++|.+....+..+..+++
T Consensus 48 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 4455555555555542 333332 2344555555555554322 2222 2345555555555555433222222444444
Q ss_pred cceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391 489 LQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527 (704)
Q Consensus 489 L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n 527 (704)
|++| ++++|.+....+.....+++|+.|++++|
T Consensus 126 L~~L------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDL------RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEE------ECCCCccceeCHHHhccCCCccEEEecCC
Confidence 4444 34444444333321113444444444444
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=135.09 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=49.5
Q ss_pred hhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh-HH
Q 041391 435 IANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED-LG 513 (704)
Q Consensus 435 l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-l~ 513 (704)
+.++++|++|+|++|......|..+..+++|++|++++|.+.+..|..++.+++|++| ++++|.+.+..+. +.
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL------MLRSNRITCVGNDSFI 126 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE------ECTTSCCCCBCTTSST
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE------ECCCCcCCeECHhHcC
Confidence 4444444444444443222222234444444444444444433333334444444444 3444444443322 22
Q ss_pred hCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391 514 NSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 514 ~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
.+++|+.|++++|.+.+..+ ..+..+++|+.|+|++|.+.
T Consensus 127 -~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 127 -GLSSVRLLSLYDNQITTVAP---GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -TCTTCSEEECTTSCCCCBCT---TTTTTCTTCCEEECCSCCEE
T ss_pred -CCccCCEEECCCCcCCEECH---HHhcCCCCCCEEEecCcCCc
Confidence 44445555555444443222 23444555555555555543
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=3.6e-15 Score=169.65 Aligned_cols=120 Identities=19% Similarity=0.140 Sum_probs=80.1
Q ss_pred CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCccccc
Q 041391 488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNN 567 (704)
Q Consensus 488 ~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 567 (704)
.|+.| ++++|.+.+. +.+. .+++|+.|++++|.+. .+| ..+..+++|+.|+|++|.+..
T Consensus 442 ~L~~L------~Ls~n~l~~l-p~~~-~l~~L~~L~Ls~N~l~-~lp---~~~~~l~~L~~L~Ls~N~l~~--------- 500 (567)
T 1dce_A 442 DVRVL------HLAHKDLTVL-CHLE-QLLLVTHLDLSHNRLR-ALP---PALAALRCLEVLQASDNALEN--------- 500 (567)
T ss_dssp TCSEE------ECTTSCCSSC-CCGG-GGTTCCEEECCSSCCC-CCC---GGGGGCTTCCEEECCSSCCCC---------
T ss_pred CceEE------EecCCCCCCC-cCcc-ccccCcEeecCccccc-ccc---hhhhcCCCCCEEECCCCCCCC---------
Confidence 36666 4677766653 3465 7777777777777665 233 467777777777777777432
Q ss_pred ccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCC--cccCCCC-CeeEEEEEcCCCCCcCCCc---cCCCCC
Q 041391 568 EHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESL--PNWLSGL-NLRKLYIRGGQLRSLQGDT---HKKYST 641 (704)
Q Consensus 568 ~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~l--P~~l~~l-~L~~L~Ls~n~l~~lp~~~---~~~f~~ 641 (704)
+| .+..+ ++|+.|+|++|.+..+ |..+..+ +|+.|+|++|.+..+|... ...+|+
T Consensus 501 -----------------lp-~l~~l-~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 501 -----------------VD-GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp -----------------CG-GGTTC-SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred -----------------Cc-ccCCC-CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 33 34455 3788888888887777 7777777 8888888888887666543 234677
Q ss_pred cCEEec
Q 041391 642 VKVLRL 647 (704)
Q Consensus 642 L~~L~L 647 (704)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 777753
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=2.5e-13 Score=139.26 Aligned_cols=147 Identities=22% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccc
Q 041391 380 NLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 380 ~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i 459 (704)
.+.++..++++++.++. ++ .+..+++|++|++++| .+..+| .++.+++|++|+|++| .+..+|. +
T Consensus 17 ~l~~l~~l~l~~~~i~~----------~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD----------LV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTS----------EE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-G
T ss_pred HHHHHHHHHhcCCCccc----------cc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-h
Confidence 35566777777776542 22 4567788888888887 566777 4788888888888887 4455555 7
Q ss_pred cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHH
Q 041391 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSES 539 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~ 539 (704)
..+++|++|++++|.+. .+|.. .. ++|++| ++++|.+... +.+. .+++|+.|++++|.+... ..
T Consensus 82 ~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L------~L~~N~l~~~-~~l~-~l~~L~~L~Ls~N~i~~~-----~~ 145 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRL------FLDNNELRDT-DSLI-HLKNLEILSIRNNKLKSI-----VM 145 (263)
T ss_dssp TTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEE------ECCSSCCSBS-GGGT-TCTTCCEEECTTSCCCBC-----GG
T ss_pred ccCCCCCEEECCCCccC-CcCcc-cc-CcccEE------EccCCccCCC-hhhc-CcccccEEECCCCcCCCC-----hH
Confidence 88888888888888754 34542 23 777777 4777776653 4566 777888888887776542 24
Q ss_pred hccCCCccEEEEEecCCC
Q 041391 540 LEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 540 L~~l~~L~~L~Ls~n~l~ 557 (704)
+..+++|+.|++++|.+.
T Consensus 146 l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp GGGCTTCCEEECTTSCCC
T ss_pred HccCCCCCEEECCCCcCc
Confidence 667777777777777643
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=3.7e-15 Score=169.61 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=128.6
Q ss_pred cCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcce
Q 041391 412 KNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQV 491 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~ 491 (704)
..+++|+.|+|++| .++.+|..+++|++|+.|++++|..+..+|..+. .+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence 45667777777776 4567777777777777777755431111111000 01112233334444444444
Q ss_pred ecccccc--------cCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCc
Q 041391 492 LKGFLVT--------DAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQ 563 (704)
Q Consensus 492 L~~~~~~--------~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~ 563 (704)
|...... .+..|. +..+. ...|+.|++++|.+.+ ++ . +..+++|+.|+|++|.+.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~----i~~l~--~~~L~~L~Ls~n~l~~-lp---~-~~~l~~L~~L~Ls~N~l~------ 476 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENS----VLKME--YADVRVLHLAHKDLTV-LC---H-LEQLLLVTHLDLSHNRLR------ 476 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHH----HHHHH--HTTCSEEECTTSCCSS-CC---C-GGGGTTCCEEECCSSCCC------
T ss_pred Ccchhhcccchhhhhhhhccc----ccccC--ccCceEEEecCCCCCC-Cc---C-ccccccCcEeecCccccc------
Confidence 4200000 111121 11222 1358899999998765 33 3 788899999999998853
Q ss_pred ccccccchhhHhhHhhhcCCCCCCcccccccceeEEEEEcCCCCCCcccCCCC-CeeEEEEEcCCCCCcC-CCccCCCCC
Q 041391 564 EGNNEHNKKQEDEAETQGKGGLDGTFGQKDRLLEKLDLHCFPLESLPNWLSGL-NLRKLYIRGGQLRSLQ-GDTHKKYST 641 (704)
Q Consensus 564 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l~~l-~L~~L~Ls~n~l~~lp-~~~~~~f~~ 641 (704)
.+|..+..+ ++|+.|+|++|.+..+| .+..+ +|+.|+|++|.+..++ ......+++
T Consensus 477 --------------------~lp~~~~~l-~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 477 --------------------ALPPALAAL-RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp --------------------CCCGGGGGC-TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred --------------------ccchhhhcC-CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 356667777 48999999999998888 67777 9999999999998884 444556899
Q ss_pred cCEEecCCCccccccc--ccccCcCCCccEEe
Q 041391 642 VKVLRLRYLNELNVNW--RELQALFPDLEYLE 671 (704)
Q Consensus 642 L~~L~L~~l~~L~l~~--~~l~~~~p~L~~L~ 671 (704)
|+.|+|++++.-.+.. ..+...+|+|+.|+
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999998865332111 11113478888875
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.1e-12 Score=134.45 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=124.7
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK 457 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~ 457 (704)
+..+++|++|++++|.++ .+| .+..+++|++|+|++| .+..+|. +.++++|++|+|++| .+..+|.
T Consensus 37 ~~~l~~L~~L~l~~n~i~----------~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ----------SLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp HHHHTTCSEEECTTSCCC----------CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTT
T ss_pred hhhcCcCcEEECcCCCcc----------cch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCc
Confidence 667899999999999776 334 6888999999999998 5777887 999999999999998 5566765
Q ss_pred cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHH
Q 041391 458 GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLS 537 (704)
Q Consensus 458 ~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~ 537 (704)
.. . ++|++|++++|.+.. +| .++.+++|++| ++++|.+... +.+. .+++|+.|++++|.+...
T Consensus 103 ~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L------~Ls~N~i~~~-~~l~-~l~~L~~L~L~~N~i~~~----- 165 (263)
T 1xeu_A 103 IP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL------SIRNNKLKSI-VMLG-FLSKLEVLDLHGNEITNT----- 165 (263)
T ss_dssp CC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE------ECTTSCCCBC-GGGG-GCTTCCEEECTTSCCCBC-----
T ss_pred cc-c-CcccEEEccCCccCC-Ch-hhcCcccccEE------ECCCCcCCCC-hHHc-cCCCCCEEECCCCcCcch-----
Confidence 43 3 899999999998654 44 58899999999 6999998765 5777 899999999999998754
Q ss_pred HHhccCCCccEEEEEecCCC
Q 041391 538 ESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 538 ~~L~~l~~L~~L~Ls~n~l~ 557 (704)
..+..+++|+.|++++|.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 45888999999999999854
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=8.1e-13 Score=130.21 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=126.0
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDSL 462 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L 462 (704)
+.++.+++.++ .+|..+ .++|++|+|++|. +..+|. .+.++++|++|++++|.. ..+|. .+..+
T Consensus 10 ~~v~c~~~~l~----------~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l 75 (208)
T 2o6s_A 10 TTVECYSQGRT----------SVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKL 75 (208)
T ss_dssp TEEECCSSCCS----------SCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTC
T ss_pred CEEEecCCCcc----------CCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCcc-CccChhhcCCC
Confidence 45666666554 334333 4588999999985 445554 478899999999998854 45554 46889
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
++|++|++++|.+....+..++.+++|++| ++++|.+....+.....+++|+.|++++|.+....+ ..+..
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~ 146 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKEL------ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---GVFDR 146 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTT
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEE------EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH---HHhcc
Confidence 999999999998765444557889999999 588888887766543388999999999998775433 34778
Q ss_pred CCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCCcccccc
Q 041391 543 FKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDGTFGQKD 593 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~lp 593 (704)
+++|+.|++++|.+...++. +..+ ....+...+.+|..+..++
T Consensus 147 l~~L~~L~l~~N~~~~~~~~-------l~~L-~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCPG-------IRYL-SEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTCCEEECCSCCBCCCTTT-------THHH-HHHHHHCTTTBBCTTSSBC
T ss_pred CCCccEEEecCCCeecCCCC-------HHHH-HHHHHhCCceeeccCcccc
Confidence 89999999999987654432 1111 2344556677777776654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=9.2e-13 Score=141.55 Aligned_cols=161 Identities=19% Similarity=0.108 Sum_probs=127.0
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGL 459 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i 459 (704)
..+++|+|++|.++.+. +..+. .+++|++|+|++|. +..++ ..|.++++|++|+|++|......+..+
T Consensus 39 ~~l~~L~Ls~N~l~~l~---------~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 108 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLR---------AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108 (361)
T ss_dssp TTCSEEECCSSCCCEEC---------TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCEEECCCCCCCccC---------hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence 45899999999886422 23455 89999999999985 55555 569999999999999985544444568
Q ss_pred cccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHH---hCCCCCcEEEEEeeCCCCchhhH
Q 041391 460 DSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLG---NSLKELRKLSIYVNNNAIPIEKL 536 (704)
Q Consensus 460 ~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~---~~L~~L~~L~L~~n~~~~~~~~l 536 (704)
..+++|++|+|++|.+....|..+..+++|++| ++++|.+......+. ..+++|+.|++++|.+.....
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L------~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-- 180 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL------YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-- 180 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE------ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH--
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEE------ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH--
Confidence 999999999999999877777889999999999 699999888766553 278999999999999875433
Q ss_pred HHHhccCCC--ccEEEEEecCCCCCCC
Q 041391 537 SESLEKFKN--LLKLKIAWGAGYSKCR 561 (704)
Q Consensus 537 ~~~L~~l~~--L~~L~Ls~n~l~~~~~ 561 (704)
..+..++. |+.|+|++|.+...|.
T Consensus 181 -~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 181 -TDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp -HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred -HHhhhccHhhcceEEecCCCccCCcC
Confidence 45666766 4889999999776553
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=2.6e-12 Score=128.02 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=124.0
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCccccccC
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPKGLDSLK 463 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~ 463 (704)
+.++++++.++ .+|..+. ++|++|+|++|. +..+|. .+..+++|++|+|++|......|..+..++
T Consensus 14 ~~v~c~~~~l~----------~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLT----------EIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80 (220)
T ss_dssp TEEECTTSCCS----------SCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred CEEEcCCCCcC----------cCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence 57888888765 4455443 689999999985 555554 689999999999999876666688899999
Q ss_pred CCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 464 KLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 464 ~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
+|++|++++|.+. .+|. .+..+++|++| ++++|.+....+.....+++|+.|++++|.+....+ ..+..
T Consensus 81 ~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~ 150 (220)
T 2v9t_B 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLL------LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFSP 150 (220)
T ss_dssp SCCEEECCSSCCC-CCCTTTTTTCTTCCEE------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTT
T ss_pred CCCEEECCCCcCC-ccCHhHccCCCCCCEE------ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHhC
Confidence 9999999999866 4554 47889999999 699999888765433389999999999999876544 45788
Q ss_pred CCCccEEEEEecCCCCCCC
Q 041391 543 FKNLLKLKIAWGAGYSKCR 561 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~ 561 (704)
+++|+.|+|++|.+...|.
T Consensus 151 l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CTTCCEEECCSSCEECSGG
T ss_pred CCCCCEEEeCCCCcCCCCc
Confidence 9999999999999776553
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.33 E-value=3.6e-14 Score=162.46 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=35.0
Q ss_pred CeeEEEEEcCCCCCcCC-CccCCCCCcCEEecCCCcccccccccccCcCCCccEEeeecCCC
Q 041391 617 NLRKLYIRGGQLRSLQG-DTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKFNCPM 677 (704)
Q Consensus 617 ~L~~L~Ls~n~l~~lp~-~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~~C~~ 677 (704)
+|+.|+|++|.+..... .....+++|+.|+|++|+.-+.....+...+|+|+.|++.+|+.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 67777777777632211 11134677788877777642211111224567788888877754
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=5.1e-12 Score=126.69 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=123.3
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCc-ccccc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPK-GLDSL 462 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L 462 (704)
.+.++.+++.++ .+|..+. ++|++|+|++|......|..+.++++|++|+|++|. +..+|. .+..+
T Consensus 21 ~~~v~c~~~~l~----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l 87 (229)
T 3e6j_A 21 GTTVDCRSKRHA----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSL 87 (229)
T ss_dssp TTEEECTTSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCEeEccCCCcC----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccC
Confidence 457888888665 4454443 889999999986555557789999999999999985 466664 46899
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
++|++|++++|.+....+..+..+++|++| ++++|.+...+..+. .+++|+.|++++|.+....+ ..+..
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L------~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~~---~~~~~ 157 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKEL------FMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSIPH---GAFDR 157 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCCCT---TTTTT
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeE------eccCCcccccCcccc-cCCCCCEEECCCCcCCccCH---HHHhC
Confidence 999999999998765555557899999999 699999887767777 99999999999998875433 45788
Q ss_pred CCCccEEEEEecCCCCCCC
Q 041391 543 FKNLLKLKIAWGAGYSKCR 561 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~~~~~ 561 (704)
+++|+.|++++|.+...+.
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999776553
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=1.1e-12 Score=141.02 Aligned_cols=154 Identities=20% Similarity=0.153 Sum_probs=117.8
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh-hh-ccccCcEEeeecccCCCcCCcccccc
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS-IA-NLSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~-l~-~L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
++++++++.++ .+|..+. ..+++|+|++|. +..++.. +. ++.+|++|+|++|......|..+..+
T Consensus 21 ~~l~c~~~~l~----------~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP----------NVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCS----------SCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEeCCCCcC----------ccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 68899998775 4455443 458999999984 6666544 55 89999999999985554445679999
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhcc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEK 542 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~ 542 (704)
++|++|+|++|.+....+..+..+++|++| ++++|.+....+.....+++|+.|++++|.+..........+..
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVL------LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEE------ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEE------ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 999999999999765555568999999999 69999988775543339999999999999987543322222267
Q ss_pred CCCccEEEEEecCCC
Q 041391 543 FKNLLKLKIAWGAGY 557 (704)
Q Consensus 543 l~~L~~L~Ls~n~l~ 557 (704)
+++|+.|+|++|.+.
T Consensus 162 l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 162 LPKLMLLDLSSNKLK 176 (361)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCCCC
Confidence 899999999999864
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=3.4e-12 Score=127.15 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=112.0
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCcccc
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
..+++|+|++|.++.+. -+..|..+++|++|+|++|. +..++ ..+.++++|++|+|++|...+..|..+.
T Consensus 32 ~~~~~L~L~~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLE--------ATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp TTCSEEECCSSCCCEEC--------CCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred CCCCEEEcCCCcCCccC--------chhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 45789999999886421 12347899999999999985 55555 4799999999999999866555556689
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI 533 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~ 533 (704)
.+++|++|++++|.+.+..|..+..+++|++| ++++|.+.+..+.....+++|+.|++++|.+....
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLL------SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE------ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEE------ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999999999887778889999999999 69999998885543338999999999999886544
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.9e-12 Score=120.76 Aligned_cols=131 Identities=24% Similarity=0.227 Sum_probs=84.1
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
.++|++|++++|.++. ..+|..+..+++|++|+|++|. +..+ ..++.+++|++|+|++|.....+|..+.
T Consensus 23 ~~~L~~L~l~~n~l~~--------~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--------GKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBT--------TBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred cccCCEEECCCCCCCh--------hhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 4677888888876541 1345556777788888888874 5555 4577777888888887755555666666
Q ss_pred ccCCCcEEEccCcccccccC--ccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEEEeeCC
Q 041391 461 SLKKLTYLDISECYLIEYMP--KELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSIYVNNN 529 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L~~n~~ 529 (704)
.+++|++|++++|.+.. +| ..++.+++|++| ++++|.+....+ .+. .+++|+.|++++|..
T Consensus 93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L------~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL------DLFNCEVTNLNDYRESVFK-LLPQLTYLDGYDRED 159 (168)
T ss_dssp HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE------ECCSSGGGTSTTHHHHHHT-TCSSCCEETTEETTS
T ss_pred hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE------EeeCCcCcchHHHHHHHHH-hCccCcEecCCCCCh
Confidence 77788888888776543 33 456666666666 466666555443 233 555555555555543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.6e-13 Score=157.81 Aligned_cols=117 Identities=25% Similarity=0.204 Sum_probs=66.9
Q ss_pred hHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCC
Q 041391 408 LKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLS 487 (704)
Q Consensus 408 p~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~ 487 (704)
|..+..+..|+.|+|++|. +..+|..+.++++|++|+|++|. +..+|..|++|++|++|+|++|.+. .+|..|+.|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 4455666666666666653 44566556666666666666653 3366666666666666666666644 5566666666
Q ss_pred CcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391 488 ELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIE 534 (704)
Q Consensus 488 ~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~ 534 (704)
+|++| ++++|.+...+..+. .|++|+.|+|++|.+.+.++
T Consensus 294 ~L~~L------~L~~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 294 QLKYF------YFFDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TCSEE------ECCSSCCCCCCSSTT-SCTTCCCEECTTSCCCSHHH
T ss_pred CCCEE------ECCCCCCCccChhhh-cCCCccEEeCCCCccCCCCh
Confidence 66666 466666554444455 66666666666666654443
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=4.6e-13 Score=153.26 Aligned_cols=132 Identities=20% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCcccceeeeeccCCCCCCchhhh-ccccCcEEeeecccCCCc--CCccccccCCCcEEEccCcccccccCc----cCCC
Q 041391 413 NMSALRLLSLQGVYGIREIPSSIA-NLSNLRVLDLRCCYYLTK--LPKGLDSLKKLTYLDISECYLIEYMPK----ELSS 485 (704)
Q Consensus 413 ~L~~Lr~L~Ls~n~~l~~lP~~l~-~L~~L~~LdLs~c~~l~~--lP~~i~~L~~L~~L~Ls~n~~~~~lP~----~i~~ 485 (704)
.+++|++|+|++|......+..+. .+++|++|+|++|...+. ++..+.++++|++|++++|.+....+. ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 445555555555532222233333 455555555555533222 333333555555555555543322211 1224
Q ss_pred CCCcceecccccccCCCCC--Cc-cchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEe
Q 041391 486 LSELQVLKGFLVTDAKPND--KI-CTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAW 553 (704)
Q Consensus 486 L~~L~~L~~~~~~~ls~n~--l~-~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~ 553 (704)
+++|++| ++++|. +. ..+..+...+++|+.|++++|.. ...++..+..+++|+.|.+..
T Consensus 183 ~~~L~~L------~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 183 YTSLVSL------NISCLASEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCCEE------ECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHHHHHHCTTCSEEECSB
T ss_pred CCcCcEE------EecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHHHHhcCCcceEccccc
Confidence 4455555 244433 11 11222222445555555555421 222334455555555555443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.8e-12 Score=120.15 Aligned_cols=137 Identities=21% Similarity=0.155 Sum_probs=114.5
Q ss_pred cCCcccceeeeeccCCC-CCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391 412 KNMSALRLLSLQGVYGI-REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l-~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~ 490 (704)
...++|++|+|++|... +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+...+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 45689999999998543 3899888999999999999985 4555 7889999999999999998776887777899999
Q ss_pred eecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCC
Q 041391 491 VLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 491 ~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
+| ++++|.+.... ..+. .+++|+.|++++|.+....+.....+..+++|+.|++++|.+.
T Consensus 99 ~L------~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HL------NLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EE------ECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EE------eccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99 69999988754 5677 9999999999999887543322247889999999999999853
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=3.6e-12 Score=118.47 Aligned_cols=127 Identities=22% Similarity=0.205 Sum_probs=76.9
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
.++|+.|++++|.++. ..+|..+..+++|++|++++| .+..+ ..++++++|++|++++|...+.+|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~--------~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--------GKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBT--------TBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CccCeEEEccCCcCCh--------hHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 3567777777775531 134555667777777777776 34444 4467777777777777655444666666
Q ss_pred ccCCCcEEEccCcccccc-cCccCCCCCCcceecccccccCCCCCCccchh----hHHhCCCCCcEEEE
Q 041391 461 SLKKLTYLDISECYLIEY-MPKELSSLSELQVLKGFLVTDAKPNDKICTLE----DLGNSLKELRKLSI 524 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~-lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~----~l~~~L~~L~~L~L 524 (704)
.+++|++|++++|.+.+. .|..++.+++|++| ++++|.+....+ .+. .+++|+.|++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L------~l~~N~l~~~~~~~~~~~~-~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL------DLFNCEVTNLNDYRENVFK-LLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE------ECTTCGGGGSTTHHHHHHH-HCTTCCEETT
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE------eCcCCcccchHHHHHHHHH-HCCCcccccC
Confidence 677777777777765432 22456666666666 466666554443 233 5555555544
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=1.8e-12 Score=151.95 Aligned_cols=119 Identities=29% Similarity=0.318 Sum_probs=100.6
Q ss_pred chhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCC
Q 041391 374 QSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLT 453 (704)
Q Consensus 374 ~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~ 453 (704)
.+..|..++.|++|+|++|.+. .+|..+..+++|++|+|++| .+..+|..|++|++|++|+|++|. +.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~----------~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF----------NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ------CCCCCCEEECTTSCCS----------CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred ChhhhccCCCCcEEECCCCCCC----------CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 3556889999999999999775 46677789999999999998 466999999999999999999985 45
Q ss_pred cCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhh
Q 041391 454 KLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLED 511 (704)
Q Consensus 454 ~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~ 511 (704)
.+|..|+.|++|++|+|++|.+ ..+|..|+.|++|++| ++++|.+.+.++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L------~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFL------GVEGNPLEKQFLK 334 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCE------ECTTSCCCSHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEE------eCCCCccCCCChH
Confidence 8999999999999999999985 5889899999999999 6999998876653
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.1e-11 Score=120.73 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=84.2
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchh--hhccccCcEEeeecccCCCcCCcccccc
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSS--IANLSNLRVLDLRCCYYLTKLPKGLDSL 462 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~--l~~L~~L~~LdLs~c~~l~~lP~~i~~L 462 (704)
++++++++.++ .+|..+.. +|++|+|++| .+..+|.. ++.+++|++|+|++|...+..|..+..+
T Consensus 11 ~~l~~s~~~l~----------~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLK----------EIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCS----------SCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcC----------cCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 56777777654 34444432 6777777776 35555542 6777777777777775555556677777
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP 532 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~ 532 (704)
++|++|++++|.+.+..|..++.+++|++| ++++|.+.+.++.....+++|+.|++++|.+...
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTL------NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEE------ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEE------ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777777777777665555557777777777 4777776665443222666777777777666544
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=3.5e-12 Score=118.56 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=108.5
Q ss_pred cCCcccceeeeeccCCC-CCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcc
Q 041391 412 KNMSALRLLSLQGVYGI-REIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQ 490 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l-~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~ 490 (704)
...++|+.|++++|... +.+|..++.+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34588999999998543 3889888999999999999984 4455 6789999999999999998776888787899999
Q ss_pred eecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEE
Q 041391 491 VLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIA 552 (704)
Q Consensus 491 ~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls 552 (704)
+| ++++|.+.... ..+. .+++|+.|++++|.+.+..+.....+..+++|+.|+++
T Consensus 92 ~L------~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HL------NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EE------ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EE------ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99 69999987753 5666 99999999999998865433222468889999999765
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=118.22 Aligned_cols=127 Identities=22% Similarity=0.212 Sum_probs=90.6
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCC
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKK 464 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~ 464 (704)
++++++++.++ .+|..+. .+|++|+|++| .+..+|..+.++++|++|+|++|......|..|..+++
T Consensus 13 ~~l~~~~~~l~----------~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLK----------VLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCS----------SCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCCCCCC----------cCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 56788877665 3444332 57888888887 46678877888888888888887555444556788888
Q ss_pred CcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCC
Q 041391 465 LTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNA 530 (704)
Q Consensus 465 L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~ 530 (704)
|++|++++|.+....|..+..+++|++| ++++|.+....+.....+++|+.|++++|.+.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L------~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLL------SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEE------ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEE------ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8888888888666555667788888888 57777777666543326777777777777654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.4e-11 Score=116.33 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=89.9
Q ss_pred cCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCc-ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCC
Q 041391 378 FSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMS-ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~-~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP 456 (704)
|..+.+|++|++++|.++. +|. +..+. +|++|+|++| .+..+ ..++.+++|++|+|++|. +..+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~----------i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV----------IEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCCS----------CCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEEC
T ss_pred cCCcCCceEEEeeCCCCch----------hHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccC
Confidence 5667888888888887652 222 33444 8888888887 45556 457888888888888874 45566
Q ss_pred ccc-cccCCCcEEEccCcccccccCc--cCCCCCCcceecccccccCCCCCCccchhh----HHhCCCCCcEEEEEeeCC
Q 041391 457 KGL-DSLKKLTYLDISECYLIEYMPK--ELSSLSELQVLKGFLVTDAKPNDKICTLED----LGNSLKELRKLSIYVNNN 529 (704)
Q Consensus 457 ~~i-~~L~~L~~L~Ls~n~~~~~lP~--~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~----l~~~L~~L~~L~L~~n~~ 529 (704)
..+ ..+++|++|++++|.+ +.+|. .++.+++|++| ++++|.+...... +. .+++|+.|+++.|..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L------~l~~N~i~~~~~~~~~~~~-~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYL------CILRNPVTNKKHYRLYVIY-KVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEE------ECCSSGGGGSTTHHHHHHH-HCTTCSEETTEECCH
T ss_pred cchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEE------EecCCCCCCcHhHHHHHHH-HCCccceeCCCcCCH
Confidence 554 7888888888888875 45665 56777777777 4777776654433 44 677777777776653
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=5.1e-13 Score=130.76 Aligned_cols=155 Identities=23% Similarity=0.186 Sum_probs=108.3
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
...++.++++.+.+++... ....+|..+..+++|++|+|++| .+..+| .+.++++|++|++++| .+..+|..+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~---~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~ 90 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIP---PIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDA 90 (198)
T ss_dssp TTCCCCTTCSEEECCBCCT---TCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHH
T ss_pred cccccCcchheeEeccccC---cHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhh
Confidence 3444444555444432110 12355667888888999999887 456678 6888889999999887 4457888777
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch--hhHHhCCCCCcEEEEEeeCCCCchhh---
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL--EDLGNSLKELRKLSIYVNNNAIPIEK--- 535 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~--~~l~~~L~~L~~L~L~~n~~~~~~~~--- 535 (704)
.+++|++|++++|.+.+ +| .++.+++|++| ++++|.+.... ..+. .+++|+.|++++|.+...++.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L------~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVL------YMSNNKITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE------EESEEECCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEE------ECCCCcCCchhHHHHHh-cCCCCCEEEecCCccccccccccc
Confidence 88889999998887553 55 57788888888 58888776543 3566 888999999998876443221
Q ss_pred ----HHHHhccCCCccEEE
Q 041391 536 ----LSESLEKFKNLLKLK 550 (704)
Q Consensus 536 ----l~~~L~~l~~L~~L~ 550 (704)
....+..+++|+.|+
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHHHHHhCCCcEEEC
Confidence 123477889999886
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1e-10 Score=113.72 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=95.2
Q ss_pred CccEEEcCCCCCcccchhhhccchhhH--hccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcccc
Q 041391 383 KVKVLHLGRWKNSAKHFVEVQGSKFLK--ELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLD 460 (704)
Q Consensus 383 ~Lr~L~L~~n~l~~~~~~~~~~~~lp~--~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~ 460 (704)
+|++|++++|.++. ++. .|..+++|++|+|++|...+..|..+.++++|++|+|++|...+..|..+.
T Consensus 30 ~l~~L~l~~n~i~~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 30 HTTELLLNDNELGR----------ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp TCSEEECCSCCCCS----------BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred CCCEEECCCCcCCc----------cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 89999999998763 333 378999999999999965555588899999999999999966666666689
Q ss_pred ccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch
Q 041391 461 SLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL 509 (704)
Q Consensus 461 ~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~ 509 (704)
.+++|++|++++|.+.+..|..+..+++|++| ++++|.+.+..
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~L~~N~l~c~c 142 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL------NLASNPFNCNC 142 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEE------ECTTCCBCCSG
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE------EeCCCCccCcC
Confidence 99999999999999888888889999999999 69999887654
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=6.7e-11 Score=115.20 Aligned_cols=132 Identities=24% Similarity=0.326 Sum_probs=110.8
Q ss_pred cceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceecccc
Q 041391 417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFL 496 (704)
Q Consensus 417 Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~ 496 (704)
-+++++++| .++.+|..+. .+|++|+|++| .+..+|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 12 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L---- 83 (193)
T 2wfh_A 12 DTVVRCSNK-GLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL---- 83 (193)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE----
T ss_pred CCEEEcCCC-CCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE----
Confidence 368899986 6888997654 68999999998 567899999999999999999999876666779999999999
Q ss_pred cccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCC
Q 041391 497 VTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCR 561 (704)
Q Consensus 497 ~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~ 561 (704)
++++|.+....+.....+++|+.|++++|.+....+ ..+..+++|+.|+|++|.+...|.
T Consensus 84 --~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 84 --ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp --ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSCEECSGG
T ss_pred --ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCCeecCCc
Confidence 699999988876533399999999999999875433 457889999999999999766553
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=2e-10 Score=109.92 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCch-hhhccccCcEEeeecccCCCcCCc-cccc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPS-SIANLSNLRVLDLRCCYYLTKLPK-GLDS 461 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~-~l~~L~~L~~LdLs~c~~l~~lP~-~i~~ 461 (704)
.+.++++++.++ .+|..+ .++|++|++++|. +..+|. .++++++|++|++++|.. ..+|. .+..
T Consensus 9 ~~~l~~~~~~l~----------~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT----------SVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSSCCS----------SCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT
T ss_pred CCEEEecCCCCc----------cCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC
Confidence 356666666554 233322 2567777777764 444443 456777777777777643 34443 3567
Q ss_pred cCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchh
Q 041391 462 LKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIE 534 (704)
Q Consensus 462 L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~ 534 (704)
+++|++|++++|.+.+..+..+..+++|++| ++++|.+...++.....+++|+.|++++|.+....+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L------~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKEL------ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEE------ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777777777777654444446677777777 477777666555543267777777777777665543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=4.9e-11 Score=114.21 Aligned_cols=134 Identities=21% Similarity=0.166 Sum_probs=107.6
Q ss_pred hccCCcccceeeeeccCCCCCCchhhhccc-cCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCcc-CCCCC
Q 041391 410 ELKNMSALRLLSLQGVYGIREIPSSIANLS-NLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKE-LSSLS 487 (704)
Q Consensus 410 ~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~-~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~-i~~L~ 487 (704)
.+..+.+|++|++++| .+..+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.+. .+|.. ++.++
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 4678899999999998 5667876 66665 99999999985 4555 67899999999999999966 45654 48999
Q ss_pred CcceecccccccCCCCCCccchh--hHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391 488 ELQVLKGFLVTDAKPNDKICTLE--DLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 488 ~L~~L~~~~~~~ls~n~l~~~~~--~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
+|++| ++++|.+..... .+. .+++|+.|++++|.+..........+..+++|+.|+++.|.
T Consensus 89 ~L~~L------~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTEL------ILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEE------ECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEE------ECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999 699999865544 577 89999999999998764322222358889999999999887
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=3.4e-10 Score=108.25 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=105.8
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~ 495 (704)
..+.++++++ .+..+|..+ ..+|++|++++|...+..+..+..+++|++|++++|.+....+..++.+++|++|
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--- 81 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL--- 81 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE---
Confidence 3578899986 578888655 4799999999986544334457899999999999998765545557899999999
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCC
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKC 560 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~ 560 (704)
++++|.+...++.....+++|+.|++++|.+....+ ..+..+++|+.|++++|.+...+
T Consensus 82 ---~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 82 ---YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSSCBCCCH
T ss_pred ---ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH---HHhcCCcccCEEEecCCCeeccC
Confidence 699999988777643389999999999999875433 34688999999999999976543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=1e-11 Score=121.38 Aligned_cols=131 Identities=26% Similarity=0.247 Sum_probs=107.4
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL 455 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l 455 (704)
..|..+++|++|++++|.++ .+| .+..+++|++|+|++| .+..+|..+..+++|++|++++|. +..+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~----------~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l 108 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIE----------KIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASL 108 (198)
T ss_dssp HHHHHTTTCSEEECSEEEES----------CCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred HHHhcCCCCCEEECCCCCCc----------ccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcC
Confidence 36889999999999999775 345 7888999999999998 567899888889999999999984 5557
Q ss_pred CccccccCCCcEEEccCcccccccC--ccCCCCCCcceecccccccCCCCCCccchhh-----------HHhCCCCCcEE
Q 041391 456 PKGLDSLKKLTYLDISECYLIEYMP--KELSSLSELQVLKGFLVTDAKPNDKICTLED-----------LGNSLKELRKL 522 (704)
Q Consensus 456 P~~i~~L~~L~~L~Ls~n~~~~~lP--~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~-----------l~~~L~~L~~L 522 (704)
| .+..+++|++|++++|.+.. +| ..+..+++|++| ++++|.+.+.++. +. .+++|+.|
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L------~l~~N~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L 179 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDL------LLAGNPLYNDYKENNATSEYRIEVVK-RLPNLKKL 179 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEE------EECSCHHHHHHHTTTTHHHHHHHHHH-HCSSCSEE
T ss_pred C-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEE------EecCCccccccccccchHHHHHHHHH-hCCCcEEE
Confidence 6 68999999999999998653 33 368899999999 5889987666543 55 89999988
Q ss_pred EEEeeCCC
Q 041391 523 SIYVNNNA 530 (704)
Q Consensus 523 ~L~~n~~~ 530 (704)
+ ++.+.
T Consensus 180 d--~~~i~ 185 (198)
T 1ds9_A 180 D--GMPVD 185 (198)
T ss_dssp C--CGGGT
T ss_pred C--CcccC
Confidence 6 55543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=3.3e-09 Score=100.91 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=58.2
Q ss_pred ccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-cccc
Q 041391 384 VKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSL 462 (704)
Q Consensus 384 Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L 462 (704)
.++++++++.++ .+|..+ ..+|++|+|++|......|..+.++++|++|+|++|.. ..+|.. +..+
T Consensus 11 ~~~l~~s~n~l~----------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSGKSLA----------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTTSCCS----------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTC
T ss_pred CCEEEeCCCCcC----------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCC
Confidence 356666666554 234333 25666666666643333355566666666666666533 344333 4566
Q ss_pred CCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccc
Q 041391 463 KKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICT 508 (704)
Q Consensus 463 ~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~ 508 (704)
++|++|++++|.+.+..+..+..+++|++| ++++|.+...
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------~L~~N~~~c~ 117 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHI------WLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCSSCBCTT
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEE------EeCCCCCCCC
Confidence 666666666666443333335566666666 3555554433
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=4.4e-09 Score=100.45 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=60.9
Q ss_pred cEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCcc-ccccC
Q 041391 385 KVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKG-LDSLK 463 (704)
Q Consensus 385 r~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~-i~~L~ 463 (704)
+.++++++.++ .+|..+. ++|++|+|++|......|..+.++++|++|+|++| .+..+|.. +..++
T Consensus 15 ~~l~~~~n~l~----------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLA----------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCS----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCC----------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcc
Confidence 56666666554 3344442 56777777776433333555666777777777766 34445444 46667
Q ss_pred CCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCCccch
Q 041391 464 KLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDKICTL 509 (704)
Q Consensus 464 ~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~~ 509 (704)
+|++|++++|.+....+..+..+++|++| ++++|.+....
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L------~L~~N~~~c~~ 121 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHI------YLYNNPWDCEC 121 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEE------ECCSSCBCTTB
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEE------EeCCCCccccc
Confidence 77777777766543222236666666666 36666555443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=4.4e-09 Score=99.98 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=93.1
Q ss_pred ccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391 416 ALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495 (704)
Q Consensus 416 ~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~ 495 (704)
..+.|++++| .+..+|..+. .+|++|+|++|...+..|..+..+++|++|++++|.+....|..+..+++|++|
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L--- 83 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL--- 83 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE---
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE---
Confidence 4678999997 6788997663 899999999986655557779999999999999998765444557899999999
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch---hhHHHHhccCCC
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI---EKLSESLEKFKN 545 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~---~~l~~~L~~l~~ 545 (704)
++++|.+....+.....+++|+.|++++|.+.... ..+..++...+.
T Consensus 84 ---~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 84 ---SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp ---ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred ---ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 69999988877753338999999999999876543 233344544443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=4.7e-09 Score=110.87 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=71.3
Q ss_pred CCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCCC-ccccccc
Q 041391 516 LKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLDG-TFGQKDR 594 (704)
Q Consensus 516 L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~lp~ 594 (704)
..++..+.+.++-.. .........+++|+.|+|+.|.+.. ++. .|..+ .
T Consensus 201 ~~~~~~l~~~~~l~~---~~~~~l~~~~~~L~~l~L~~n~i~~--------------------------I~~~aF~~~-~ 250 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN---ADFKLIRDYMPNLVSLDISKTNATT--------------------------IPDFTFAQK-K 250 (329)
T ss_dssp GGGCSEEEEEECCCH---HHHHHHHHHCTTCCEEECTTBCCCE--------------------------ECTTTTTTC-T
T ss_pred ccccceEEEeeeecH---HHHHHHHHhcCCCeEEECCCCCcce--------------------------ecHhhhhCC-C
Confidence 455666666665221 1111122347888888888776432 222 23333 4
Q ss_pred ceeEEEEEcCCCCCCccc-CCCC-Cee-EEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEe
Q 041391 595 LLEKLDLHCFPLESLPNW-LSGL-NLR-KLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLE 671 (704)
Q Consensus 595 ~L~~L~Ls~~~l~~lP~~-l~~l-~L~-~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~ 671 (704)
+|+.|+|..+ +..++.. +..+ +|+ .|.|.+ .++.++...+..+++|+.|.|.....-.+....+ ..+++|+.|.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence 7888888776 6666654 3444 788 888877 7777777777778888888875433222223222 2345555543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=7.1e-09 Score=98.99 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=82.4
Q ss_pred cceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccccccCc-cCCCCCCcceeccc
Q 041391 417 LRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGF 495 (704)
Q Consensus 417 Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~ 495 (704)
-+.+++++| .++.+|..+. .+|++|+|++|...+..|..+.++++|++|+|++|.+.+ +|. .+..+++|++|
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L--- 86 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL--- 86 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE---
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE---
Confidence 378899986 5788888664 889999999986655557778899999999999998654 554 46788999999
Q ss_pred ccccCCCCCCccchhh-HHhCCCCCcEEEEEeeCCCCc
Q 041391 496 LVTDAKPNDKICTLED-LGNSLKELRKLSIYVNNNAIP 532 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~-l~~~L~~L~~L~L~~n~~~~~ 532 (704)
++++|.+...++. +. .+++|+.|++++|.+...
T Consensus 87 ---~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 ---DLNDNHLKSIPRGAFD-NLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ---ECCSSCCCCCCTTTTT-TCTTCSEEECCSSCBCTT
T ss_pred ---ECCCCccceeCHHHhc-cccCCCEEEeCCCCcccc
Confidence 5888888877665 55 788888888888877643
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=3.9e-09 Score=113.53 Aligned_cols=165 Identities=15% Similarity=0.081 Sum_probs=106.8
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhcc-CCcccceeeeeccCCCCCCchh-hhccccCcEEeeecccCCCcCCcc
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELK-NMSALRLLSLQGVYGIREIPSS-IANLSNLRVLDLRCCYYLTKLPKG 458 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~-~L~~Lr~L~Ls~n~~l~~lP~~-l~~L~~L~~LdLs~c~~l~~lP~~ 458 (704)
++.|+.|+|++|.++.... ..+...+. ...+|++|+|++|.....-... ...+.+|++|+|++|.....-...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-----~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-----TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-----HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH-----HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 4567888999887763221 23333444 3368899999987432221222 234678889999988543322222
Q ss_pred c-----cccCCCcEEEccCccccc----ccCccCCCCCCcceecccccccCCCCCCccc-----hhhHHhCCCCCcEEEE
Q 041391 459 L-----DSLKKLTYLDISECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICT-----LEDLGNSLKELRKLSI 524 (704)
Q Consensus 459 i-----~~L~~L~~L~Ls~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~-----~~~l~~~L~~L~~L~L 524 (704)
+ ...++|++|+|++|.+.. .++..+..+++|++| ++++|.+... ...+. ..++|+.|++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L------~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~L 218 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL------SLLHTGLGDEGLELLAAQLD-RNRQLQELNV 218 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE------ECTTSSCHHHHHHHHHHHGG-GCSCCCEEEC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE------eCCCCCCCcHHHHHHHHHHh-cCCCcCeEEC
Confidence 2 235779999999887643 234445677888888 5888886542 12344 6778999999
Q ss_pred EeeCCCCch-hhHHHHhccCCCccEEEEEecCCC
Q 041391 525 YVNNNAIPI-EKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 525 ~~n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
++|.+.... ..+...+...++|++|+|++|.+.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 998876432 345566777888999999988853
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=2.4e-08 Score=105.42 Aligned_cols=252 Identities=12% Similarity=0.118 Sum_probs=144.1
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccC-CcccceeeeeccCCCC-------------------CCc-hhhhc--
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKN-MSALRLLSLQGVYGIR-------------------EIP-SSIAN-- 437 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~-L~~Lr~L~Ls~n~~l~-------------------~lP-~~l~~-- 437 (704)
+.+|+.|.++++ +. ...+ ..+.. +++|++|+|++|.... .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~--------~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK-LN--------AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE-EC--------HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEE
T ss_pred hCceeEEEEecc-cc--------HHHH-HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccc
Confidence 567888888865 11 0111 22333 7889999999985330 122 23555
Q ss_pred ------cccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccCccCCCCCCcceecccccccCCCCCC---cc
Q 041391 438 ------LSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGFLVTDAKPNDK---IC 507 (704)
Q Consensus 438 ------L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~~~~~ls~n~l---~~ 507 (704)
+.+|+.|+|.+ .+..++. .|..+++|+.|++.+|.+....+..|..+.++..+. ...+.. ..
T Consensus 94 ~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~------~~~~~~~~~~~ 165 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP------LGSSDAYRFKN 165 (329)
T ss_dssp TTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC------TTCTHHHHTST
T ss_pred cccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec------Ccchhhhhccc
Confidence 77777777776 3444443 467777777777777765444444466666665552 111000 00
Q ss_pred ch--hhHHhCCCCCc-EEEEEeeCCCCchhhH-HHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCC
Q 041391 508 TL--EDLGNSLKELR-KLSIYVNNNAIPIEKL-SESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKG 583 (704)
Q Consensus 508 ~~--~~l~~~L~~L~-~L~L~~n~~~~~~~~l-~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (704)
.+ ..+. .+.+|+ .+.+... +.++.. ...-....++..+.+.++-... ..
T Consensus 166 ~i~~~~f~-~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-------------~~---------- 218 (329)
T 3sb4_A 166 RWEHFAFI-EGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNA-------------DF---------- 218 (329)
T ss_dssp TTTTSCEE-ESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHH-------------HH----------
T ss_pred cccccccc-cccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHH-------------HH----------
Confidence 00 0112 334444 3333221 122221 1111234566777776542100 00
Q ss_pred CCCCcccccccceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcC-EEecCCCcccccccccc
Q 041391 584 GLDGTFGQKDRLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVK-VLRLRYLNELNVNWREL 660 (704)
Q Consensus 584 ~l~~~~~~lp~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~-~L~L~~l~~L~l~~~~l 660 (704)
..+...+++|+.|+|++|.+..+|... ..+ +|+.|+|.+| +..++...+..+++|+ .+.|.+ ..-.+....+
T Consensus 219 ---~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 219 ---KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp ---HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred ---HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhh
Confidence 001111258999999999899998764 445 9999999987 8889998888999999 999977 2222333333
Q ss_pred cCcCCCccEEeeecCCCCCCCCCC
Q 041391 661 QALFPDLEYLEKFNCPMISFFPCD 684 (704)
Q Consensus 661 ~~~~p~L~~L~i~~C~~L~~lP~~ 684 (704)
..+++|+.|++.+. +++.++..
T Consensus 294 -~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 294 -MGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp -TTCTTEEEEEECSS-CCCEECTT
T ss_pred -hCCccCCEEEeCCC-ccCccchh
Confidence 45788999988654 66777653
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.3e-06 Score=94.75 Aligned_cols=250 Identities=10% Similarity=0.063 Sum_probs=150.3
Q ss_pred CCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeec
Q 041391 370 FPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRC 448 (704)
Q Consensus 370 ~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~ 448 (704)
+..+...+|.++ +|+.+.+..+ ++.+. ..+|.++ +|+.+.|.. .+..++ ..|.++.+|+.+++.+
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~---------~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIG---------DMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEEC---------TTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEEC---------HHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCC
Confidence 334445677775 6888888766 43222 2345554 688888886 355554 5688889999999987
Q ss_pred ccCCCcCCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391 449 CYYLTKLPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527 (704)
Q Consensus 449 c~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n 527 (704)
| .+..+|.......+|+.+.+..+ ...++ ..+.++++|+.+. +..+ +...-...+.. .+|+.+.+..
T Consensus 190 n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~------l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 190 T-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE------IPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp S-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE------CCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred C-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe------cCCC-ccCcccccccc-CCccEEEeCC-
Confidence 5 56667766555688999988855 33444 4477888888883 5443 23222333313 6888888843
Q ss_pred CCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCC
Q 041391 528 NNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPL 606 (704)
Q Consensus 528 ~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l 606 (704)
.+. .++. .+|.++++|+.+.+..+...... ...++ ..|..+ .+|+.+.|.. .+
T Consensus 258 ~i~-~I~~--~aF~~c~~L~~l~l~~~~~~~~~---------------------~~~I~~~aF~~c-~~L~~l~l~~-~i 311 (401)
T 4fdw_A 258 GVT-NIAS--RAFYYCPELAEVTTYGSTFNDDP---------------------EAMIHPYCLEGC-PKLARFEIPE-SI 311 (401)
T ss_dssp TCC-EECT--TTTTTCTTCCEEEEESSCCCCCT---------------------TCEECTTTTTTC-TTCCEECCCT-TC
T ss_pred Ccc-EECh--hHhhCCCCCCEEEeCCccccCCc---------------------ccEECHHHhhCC-ccCCeEEeCC-ce
Confidence 332 2222 56888889999998877642100 00111 233344 4788888873 46
Q ss_pred CCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcccccccccccCcCCCccEEeee
Q 041391 607 ESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNELNVNWRELQALFPDLEYLEKF 673 (704)
Q Consensus 607 ~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~L~l~~~~l~~~~p~L~~L~i~ 673 (704)
..++.. +..+ +|+.|.|.. .+..++...+..+ +|+.+.+.+..--.+....+.+....++.|.+-
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 666543 3344 888888854 4677777667666 788888876533332323232222345555543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1e-07 Score=101.22 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=32.9
Q ss_pred hhHhccCCcccceeeeec-cCCCCCCc-hhhhccccCcEEeeecccCCCcCCccccccCCCcEEEccCcccc
Q 041391 407 FLKELKNMSALRLLSLQG-VYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPKGLDSLKKLTYLDISECYLI 476 (704)
Q Consensus 407 lp~~l~~L~~Lr~L~Ls~-n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~~L~~L~Ls~n~~~ 476 (704)
+|. |..+.+|++|+|++ | .+..+| ..|++|.+|++|+|++|...+..|..|.+|++|++|+|++|.+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred cCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 344 55555555555553 3 233333 34555555555555555333333334455555555555555533
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=6.8e-08 Score=102.54 Aligned_cols=106 Identities=18% Similarity=0.062 Sum_probs=88.1
Q ss_pred ceeeeeccCCCCCCchhhhccccCcEEeeec-ccCCCcCC-ccccccCCCcEEEccCcccccccCccCCCCCCcceeccc
Q 041391 418 RLLSLQGVYGIREIPSSIANLSNLRVLDLRC-CYYLTKLP-KGLDSLKKLTYLDISECYLIEYMPKELSSLSELQVLKGF 495 (704)
Q Consensus 418 r~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~-c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~~i~~L~~L~~L~~~ 495 (704)
..++++++..+..+|. +..+.+|++|+|++ | .+..+| ..|+.|++|++|+|++|.+.+..|..|++|++|+.|
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L--- 85 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL--- 85 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE---
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE---
Confidence 3467777536788999 99999999999996 6 555555 679999999999999999887777778999999999
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCc
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIP 532 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~ 532 (704)
++++|.+...++.++ ....|+.|++.+|.+...
T Consensus 86 ---~l~~N~l~~~~~~~~-~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 86 ---NLSFNALESLSWKTV-QGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp ---ECCSSCCSCCCSTTT-CSCCCCEEECCSSCCCCC
T ss_pred ---eCCCCccceeCHHHc-ccCCceEEEeeCCCccCC
Confidence 699999998887777 444499999999988654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.5e-08 Score=108.94 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=97.5
Q ss_pred CCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCC-chhh-----hccccCcEEeeecccCCC-
Q 041391 381 LKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREI-PSSI-----ANLSNLRVLDLRCCYYLT- 453 (704)
Q Consensus 381 l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~l-P~~l-----~~L~~L~~LdLs~c~~l~- 453 (704)
.++|++|+|++|.++.. .+..-...+.+|++|+|++|. ++.. ...+ ...++|++|+|++|....
T Consensus 100 ~~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 100 RHALDEVNLASCQLDPA--------GLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp SSCEEEEECTTCCCCHH--------HHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred CCCceEEEecCCCCCHH--------HHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 47999999999987531 122223345689999999984 4332 2223 245789999999985432
Q ss_pred ---cCCccccccCCCcEEEccCccccc----ccCccCCCCCCcceecccccccCCCCCCccc----h-hhHHhCCCCCcE
Q 041391 454 ---KLPKGLDSLKKLTYLDISECYLIE----YMPKELSSLSELQVLKGFLVTDAKPNDKICT----L-EDLGNSLKELRK 521 (704)
Q Consensus 454 ---~lP~~i~~L~~L~~L~Ls~n~~~~----~lP~~i~~L~~L~~L~~~~~~~ls~n~l~~~----~-~~l~~~L~~L~~ 521 (704)
.++..+..+++|++|+|++|.+.. .++..+...++|++| ++++|.+... + ..+. ..++|+.
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L------~Ls~N~i~~~g~~~l~~~L~-~~~~L~~ 243 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL------NVAYNGAGDTAALALARAAR-EHPSLEL 243 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE------ECCSSCCCHHHHHHHHHHHH-HCSSCCE
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE------ECCCCCCCHHHHHHHHHHHH-hCCCCCE
Confidence 355566788999999999998653 234556778899999 6999988643 2 2344 6789999
Q ss_pred EEEEeeCCCCc
Q 041391 522 LSIYVNNNAIP 532 (704)
Q Consensus 522 L~L~~n~~~~~ 532 (704)
|++++|.+...
T Consensus 244 L~Ls~N~i~~~ 254 (372)
T 3un9_A 244 LHLYFNELSSE 254 (372)
T ss_dssp EECTTSSCCHH
T ss_pred EeccCCCCCHH
Confidence 99999998643
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.7e-06 Score=93.85 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=153.8
Q ss_pred CCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecc
Q 041391 370 FPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCC 449 (704)
Q Consensus 370 ~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c 449 (704)
+..+...+|.++ +|+.+.+.. .++.+. +.+|.+|.+|+.++|.+| .+..+|.......+|+.+.|..+
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~---------~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLK---------EDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEEC---------SSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEeh---------HHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc
Confidence 445556678885 699999986 343221 256889999999999986 57778766555789999999853
Q ss_pred cCCCcCC-ccccccCCCcEEEccCcccccccCc-cCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEee
Q 041391 450 YYLTKLP-KGLDSLKKLTYLDISECYLIEYMPK-ELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVN 527 (704)
Q Consensus 450 ~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP~-~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n 527 (704)
+..++ ..|.++++|+.+++..+ ...++. .+.. .+|+.+. +. +.+.......+..+++|+.+.+.++
T Consensus 214 --l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~------lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 214 --LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVK------LP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp --CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEE------EE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred --hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEE------eC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 55554 45788999999999875 344544 3555 7788883 42 2333333333338899999999887
Q ss_pred CCCC----chhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEE
Q 041391 528 NNAI----PIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLH 602 (704)
Q Consensus 528 ~~~~----~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls 602 (704)
.... .++. .+|.++++|+.+.|.. .+.. ++ ..|..+ .+|+.+.|.
T Consensus 282 ~~~~~~~~~I~~--~aF~~c~~L~~l~l~~-~i~~--------------------------I~~~aF~~c-~~L~~l~lp 331 (401)
T 4fdw_A 282 TFNDDPEAMIHP--YCLEGCPKLARFEIPE-SIRI--------------------------LGQGLLGGN-RKVTQLTIP 331 (401)
T ss_dssp CCCCCTTCEECT--TTTTTCTTCCEECCCT-TCCE--------------------------ECTTTTTTC-CSCCEEEEC
T ss_pred cccCCcccEECH--HHhhCCccCCeEEeCC-ceEE--------------------------EhhhhhcCC-CCccEEEEC
Confidence 6531 1222 5688999999998873 2211 11 233344 589999996
Q ss_pred cCCCCCCcccC-CCCCeeEEEEEcCCCCCcCCCccCCCC-CcCEEecCC
Q 041391 603 CFPLESLPNWL-SGLNLRKLYIRGGQLRSLQGDTHKKYS-TVKVLRLRY 649 (704)
Q Consensus 603 ~~~l~~lP~~l-~~l~L~~L~Ls~n~l~~lp~~~~~~f~-~L~~L~L~~ 649 (704)
.+ +..++... ...+|+.|.+.+|....++...+.+++ .++.|.+..
T Consensus 332 ~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 332 AN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred cc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 54 66665433 333999999999998888877777775 677777754
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=1.9e-07 Score=99.66 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391 515 SLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 515 ~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
.+++|+.|++.+|.+.............+++|++|+|+.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 35677777777666542221111111245667777776655
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=4.6e-07 Score=96.75 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=105.7
Q ss_pred cCCCCCccEEEcCCCCCcc--cchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC
Q 041391 378 FSNLKKVKVLHLGRWKNSA--KHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL 455 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n~l~~--~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l 455 (704)
..++++|+.|.+....... +.|+ ....+...+..+++|+.|+|++|..+ .+|. +. +++|++|+|..|......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~--~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWI--EQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGC--BCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccc--cccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 4567789999887653211 1111 11235566678899999999987433 4554 43 889999999987543322
Q ss_pred Ccccc--ccCCCcEEEccCc--ccccc-----cCccC--CCCCCcceecccccccCCCCCCccch-hhHH--hCCCCCcE
Q 041391 456 PKGLD--SLKKLTYLDISEC--YLIEY-----MPKEL--SSLSELQVLKGFLVTDAKPNDKICTL-EDLG--NSLKELRK 521 (704)
Q Consensus 456 P~~i~--~L~~L~~L~Ls~n--~~~~~-----lP~~i--~~L~~L~~L~~~~~~~ls~n~l~~~~-~~l~--~~L~~L~~ 521 (704)
...+. .+++|++|+|+.+ ...+. +...+ ..+++|++| ++.+|.+.... ..+. ..+++|+.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L------~L~~~~i~~~~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL------GIVDAEEQNVVVEMFLESDILPQLET 283 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE------EEESCTTHHHHHHHHHHCSSGGGCSE
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE------eCCCCCCchHHHHHHHhCccCCCCCE
Confidence 23333 7899999998632 11111 11122 357899999 47777665322 2222 15789999
Q ss_pred EEEEeeCCCCch-hhHHHHhccCCCccEEEEEecCCC
Q 041391 522 LSIYVNNNAIPI-EKLSESLEKFKNLLKLKIAWGAGY 557 (704)
Q Consensus 522 L~L~~n~~~~~~-~~l~~~L~~l~~L~~L~Ls~n~l~ 557 (704)
|+|+.|.+.... ..++..+..+++|+.|+|+.|.+.
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 999998875432 234445567899999999988753
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=1.4e-05 Score=76.61 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=57.0
Q ss_pred hhcCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecc
Q 041391 376 KWFSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCC 449 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c 449 (704)
..+...+.|++|+|++| .+... ....+...+...++|++|+|++|. ++. +...+...++|++|+|++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~-----g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVP-----TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHH-----HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCHH-----HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 45677888888888888 76532 112455667777888888888874 432 2333455567777777776
Q ss_pred cCCC----cCCccccccCCCcEEEc--cCcc
Q 041391 450 YYLT----KLPKGLDSLKKLTYLDI--SECY 474 (704)
Q Consensus 450 ~~l~----~lP~~i~~L~~L~~L~L--s~n~ 474 (704)
.... .+...+...++|++|++ ++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 4322 13344455556666666 4454
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=1.5e-05 Score=80.96 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=54.2
Q ss_pred cCCcccceeeeeccCCCC--CCchhhhccccCcEEeeecccCCCcCCccccccC--CCcEEEccCcccccccCc------
Q 041391 412 KNMSALRLLSLQGVYGIR--EIPSSIANLSNLRVLDLRCCYYLTKLPKGLDSLK--KLTYLDISECYLIEYMPK------ 481 (704)
Q Consensus 412 ~~L~~Lr~L~Ls~n~~l~--~lP~~l~~L~~L~~LdLs~c~~l~~lP~~i~~L~--~L~~L~Ls~n~~~~~lP~------ 481 (704)
.++++|+.|+|++|.... .+|..+..+++|++|+|++|.. ..+ ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467788888888875333 3445667888888888888744 333 3445555 888888888887665552
Q ss_pred -cCCCCCCcceec
Q 041391 482 -ELSSLSELQVLK 493 (704)
Q Consensus 482 -~i~~L~~L~~L~ 493 (704)
.+..+++|+.|.
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 255677777774
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=5.5e-05 Score=71.48 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=62.3
Q ss_pred CCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhcc----ccCcEEeeecccCCCcC-
Q 041391 382 KKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANL----SNLRVLDLRCCYYLTKL- 455 (704)
Q Consensus 382 ~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L----~~L~~LdLs~c~~l~~l- 455 (704)
..|+.||+++|.++.. -...+..+++|+.|+|++|..++.-. ..++.+ ++|++|+|++|..++.-
T Consensus 61 ~~L~~LDLs~~~Itd~---------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI---------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGG---------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHH---------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4699999999977632 12456889999999999997665422 235554 47999999999755421
Q ss_pred CccccccCCCcEEEccCcccc
Q 041391 456 PKGLDSLKKLTYLDISECYLI 476 (704)
Q Consensus 456 P~~i~~L~~L~~L~Ls~n~~~ 476 (704)
-..+..+++|++|++++|...
T Consensus 132 l~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTC
T ss_pred HHHHhcCCCCCEEECCCCCCC
Confidence 134677899999999998643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=7e-05 Score=76.01 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=65.7
Q ss_pred CCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCchhhhccc--cCcEEeeecccCCCcCC
Q 041391 379 SNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIPSSIANLS--NLRVLDLRCCYYLTKLP 456 (704)
Q Consensus 379 ~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP~~l~~L~--~L~~LdLs~c~~l~~lP 456 (704)
.++++|++|+|++|.++.+. .+|..+..+++|++|+|++|. +..+. .+..+. +|++|+|++|...+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~-------~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD-------DMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG-------GGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCc-------cchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 56889999999999987542 456677899999999999984 56553 356565 99999999998776666
Q ss_pred c-------cccccCCCcEEEc
Q 041391 457 K-------GLDSLKKLTYLDI 470 (704)
Q Consensus 457 ~-------~i~~L~~L~~L~L 470 (704)
. .+..+++|+.||-
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 2 3678999999973
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=3.8e-05 Score=73.60 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=43.9
Q ss_pred hhHhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCC----cCCccccccCCCcEEEccCcccc
Q 041391 407 FLKELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLT----KLPKGLDSLKKLTYLDISECYLI 476 (704)
Q Consensus 407 lp~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~~ 476 (704)
+...+...+.|++|+|++|..++. +...+...++|++|+|++|.... .+...+...++|++|+|++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 445667788888899888723332 33445566778888888874332 23334445567777777777643
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.29 E-value=0.00013 Score=68.81 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred CcccceeeeeccCCCCCCchhhhccccCcEEeeecccCCCcC-Ccccccc----CCCcEEEccCcc
Q 041391 414 MSALRLLSLQGVYGIREIPSSIANLSNLRVLDLRCCYYLTKL-PKGLDSL----KKLTYLDISECY 474 (704)
Q Consensus 414 L~~Lr~L~Ls~n~~l~~lP~~l~~L~~L~~LdLs~c~~l~~l-P~~i~~L----~~L~~L~Ls~n~ 474 (704)
-..|+.|||++|.....--..+.++++|++|+|++|..++.- -..+..+ ++|++|++++|.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 357899999998632222244678888899999888655421 1223333 357888888775
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.23 E-value=0.0027 Score=68.16 Aligned_cols=276 Identities=12% Similarity=0.043 Sum_probs=138.4
Q ss_pred eeeeeecccCCCCCcchhhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccC------------
Q 041391 359 TVSALVNVSEQFPDFQSKWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVY------------ 426 (704)
Q Consensus 359 ~lr~l~~~~~~~~~~~~~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~------------ 426 (704)
.+..+... +.+..+...+|.+|.+|+.+++..+ ++.+. ...|.++..|+.+.+..+-
T Consensus 72 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---------~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 72 KVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIG---------RCTFSGCYALKSILLPLMLKSIGVEAFKGCD 140 (394)
T ss_dssp TEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEEC---------TTTTTTCTTCCCCCCCTTCCEECTTTTTTCC
T ss_pred CceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEcc---------chhhcccccchhhcccCceeeecceeeeccc
Confidence 44444332 3344455567888888888888654 32211 1234455555554443210
Q ss_pred --------CCCCC-chhhhccccCcEEeeecccCCCcCC-ccccccCCCcEEEccCcccccccC-ccCCCCCCcceeccc
Q 041391 427 --------GIREI-PSSIANLSNLRVLDLRCCYYLTKLP-KGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGF 495 (704)
Q Consensus 427 --------~l~~l-P~~l~~L~~L~~LdLs~c~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~ 495 (704)
....+ ...|.++.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ ...++ ..+.++..|+.+.
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~-- 214 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENME-- 214 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCC--
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceee--
Confidence 01111 234677888999998753 33444 34777889999988766 23333 3466777777763
Q ss_pred ccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHh
Q 041391 496 LVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQED 575 (704)
Q Consensus 496 ~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~ 575 (704)
+..+. ...-.... ...+|+.+.+.... . .+.. ..+..+..|+.+.+..+...-. ..............
T Consensus 215 ----~~~~~-~~i~~~~~-~~~~l~~i~ip~~~-~-~i~~--~~f~~~~~l~~~~~~~~~~~i~-~~~F~~~~~l~~~~- 282 (394)
T 4fs7_A 215 ----FPNSL-YYLGDFAL-SKTGVKNIIIPDSF-T-ELGK--SVFYGCTDLESISIQNNKLRIG-GSLFYNCSGLKKVI- 282 (394)
T ss_dssp ----CCTTC-CEECTTTT-TTCCCCEEEECTTC-C-EECS--STTTTCSSCCEEEECCTTCEEC-SCTTTTCTTCCEEE-
T ss_pred ----cCCCc-eEeehhhc-ccCCCceEEECCCc-e-eccc--ccccccccceeEEcCCCcceee-ccccccccccceec-
Confidence 32221 11111222 44667777664321 1 1111 3456677777777754431100 00000000000000
Q ss_pred hHhhhcCCCCCC-cccccccceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCcc
Q 041391 576 EAETQGKGGLDG-TFGQKDRLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLNE 652 (704)
Q Consensus 576 ~~~~~~~~~l~~-~~~~lp~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~~ 652 (704)
.....++. .+... .+|+.+.+..+ +..++.. +... +|+.++|.. .++.+....+..+.+|+.+.|...
T Consensus 283 ----~~~~~i~~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-- 353 (394)
T 4fs7_A 283 ----YGSVIVPEKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-- 353 (394)
T ss_dssp ----ECSSEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--
T ss_pred ----cCceeecccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--
Confidence 00001111 22222 47777777543 4555443 3334 788888854 366777767777778888777532
Q ss_pred cc-cccccccCcCCCccEEeee
Q 041391 653 LN-VNWRELQALFPDLEYLEKF 673 (704)
Q Consensus 653 L~-l~~~~l~~~~p~L~~L~i~ 673 (704)
+. +....+ ..+++|+.+.+.
T Consensus 354 l~~I~~~aF-~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 LRKIGANAF-QGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTB-TTCTTCCEEEEE
T ss_pred ccEehHHHh-hCCCCCCEEEEC
Confidence 22 222222 235666666664
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.01 E-value=0.0087 Score=64.15 Aligned_cols=52 Identities=15% Similarity=0.366 Sum_probs=27.6
Q ss_pred ceeEEEEEcCCCCCCcccCC-CC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391 595 LLEKLDLHCFPLESLPNWLS-GL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648 (704)
Q Consensus 595 ~L~~L~Ls~~~l~~lP~~l~-~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~ 648 (704)
.|+.+.+.. .+..++.... .. +|+.+.|..+ ++.+....+.++.+|+.+.|.
T Consensus 289 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 289 ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 555555532 3444443322 22 6666666543 555555555566666666663
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.95 E-value=0.0034 Score=67.39 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=117.9
Q ss_pred hhcCCCCCccEEEcCCCCCcccchhhhccchhhHhccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCc
Q 041391 376 KWFSNLKKVKVLHLGRWKNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTK 454 (704)
Q Consensus 376 ~~f~~l~~Lr~L~L~~n~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~ 454 (704)
.+|.++++|+.+.+..+-.+ + -...|.++.+|+.+.+..+ +..++ ..+.++..|+.+.+..+ ...
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I---------~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~ 221 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-L---------HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYY 221 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-E---------CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCE
T ss_pred hhhcccCCCcEEecCCccce-e---------ccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceE
Confidence 45677777777777654211 0 0234666677777777653 33333 33556666666666543 222
Q ss_pred CCccccccCCCcEEEccCcccccccC-ccCCCCCCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCch
Q 041391 455 LPKGLDSLKKLTYLDISECYLIEYMP-KELSSLSELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPI 533 (704)
Q Consensus 455 lP~~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~ 533 (704)
+........+|+.+.+.... ..+. ..+..+..|+.+. +..+...-....+. .+..|+.+....+.+
T Consensus 222 i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~------~~~~~~~i~~~~F~-~~~~l~~~~~~~~~i---- 288 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESIS------IQNNKLRIGGSLFY-NCSGLKKVIYGSVIV---- 288 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEE------ECCTTCEECSCTTT-TCTTCCEEEECSSEE----
T ss_pred eehhhcccCCCceEEECCCc--eecccccccccccceeEE------cCCCcceeeccccc-cccccceeccCceee----
Confidence 33333344566666665431 1222 2345556666652 33222111112233 556666665543321
Q ss_pred hhHHHHhccCCCccEEEEEecCCCCCCCCcccccccchhhHhhHhhhcCCCCC-CcccccccceeEEEEEcCCCCCCcc-
Q 041391 534 EKLSESLEKFKNLLKLKIAWGAGYSKCRNQEGNNEHNKKQEDEAETQGKGGLD-GTFGQKDRLLEKLDLHCFPLESLPN- 611 (704)
Q Consensus 534 ~~l~~~L~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~~~~~lp~~L~~L~Ls~~~l~~lP~- 611 (704)
+. ..+..+.+|+.+.+..+- . .++ ..|..+ .+|+.+.|..+ +..++.
T Consensus 289 ~~--~~F~~~~~L~~i~l~~~i-~--------------------------~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 289 PE--KTFYGCSSLTEVKLLDSV-K--------------------------FIGEEAFESC-TSLVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp CT--TTTTTCTTCCEEEECTTC-C--------------------------EECTTTTTTC-TTCCEECCCTT-CCEECTT
T ss_pred cc--cccccccccccccccccc-c--------------------------eechhhhcCC-CCCCEEEeCCc-ccEEhHH
Confidence 11 346677778877774321 1 111 223333 57888888543 556654
Q ss_pred cCCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecCC
Q 041391 612 WLSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRY 649 (704)
Q Consensus 612 ~l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~ 649 (704)
.+... +|+.+.|..+ +..+....+.++++|+.+.|..
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 34445 9999999766 7888888888889999998854
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.46 E-value=0.13 Score=54.49 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=31.7
Q ss_pred cceeEEEEEcCCCCCCcccC-CCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEecC
Q 041391 594 RLLEKLDLHCFPLESLPNWL-SGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLR 648 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~~lP~~l-~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~ 648 (704)
.+|+.+.+..+ +..++... ... +|+.+.+.++.++.++...+..+.+|+.+.|.
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 35666666432 34444332 233 77777777666666666666666677777664
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.96 E-value=0.36 Score=50.85 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=28.7
Q ss_pred cceeEEEEEcCCCCCCccc-CCCC-CeeEEEEEcCCCCCcCCCccCCCCCcCEEec
Q 041391 594 RLLEKLDLHCFPLESLPNW-LSGL-NLRKLYIRGGQLRSLQGDTHKKYSTVKVLRL 647 (704)
Q Consensus 594 ~~L~~L~Ls~~~l~~lP~~-l~~l-~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L 647 (704)
.+|+.+.+.++.+..++.. +... +|+.+.|..+ ++.+....+..+.+|+.+.|
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4666666665555555433 2333 6666666432 55555555555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.88 E-value=0.058 Score=47.99 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=33.4
Q ss_pred EEEEEcCCCC--CCcccCCCCCeeEEEEEcCCCCCcCCCccCCCCCcCEEecCCCc
Q 041391 598 KLDLHCFPLE--SLPNWLSGLNLRKLYIRGGQLRSLQGDTHKKYSTVKVLRLRYLN 651 (704)
Q Consensus 598 ~L~Ls~~~l~--~lP~~l~~l~L~~L~Ls~n~l~~lp~~~~~~f~~L~~L~L~~l~ 651 (704)
.++.+++.++ .+|..+.. +|++|+|++|+++.++...+..+++|+.|.|.+++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~-~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPV-DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCT-TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCc-CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555565 66644322 67777777777777776666666777777776644
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.78 E-value=0.5 Score=50.20 Aligned_cols=127 Identities=15% Similarity=0.188 Sum_probs=59.9
Q ss_pred hccCCcccceeeeeccCCCCCCc-hhhhccccCcEEeeecccCCCcCCc-cccccCCCcEEEccCcccccccC-ccCCCC
Q 041391 410 ELKNMSALRLLSLQGVYGIREIP-SSIANLSNLRVLDLRCCYYLTKLPK-GLDSLKKLTYLDISECYLIEYMP-KELSSL 486 (704)
Q Consensus 410 ~l~~L~~Lr~L~Ls~n~~l~~lP-~~l~~L~~L~~LdLs~c~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lP-~~i~~L 486 (704)
+|.++..|+.+.+..+ ...++ ..+.++.+|+.+.+.. .+..++. .|.++.+|+.+.+..+ ...+. ..|.++
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence 3555666666666543 22222 3355566666666653 2344433 3556666777766543 22332 336666
Q ss_pred CCcceecccccccCCCCCCccchhhHHhCCCCCcEEEEEeeCCCCchhhHHHHhccCCCccEEEEEecC
Q 041391 487 SELQVLKGFLVTDAKPNDKICTLEDLGNSLKELRKLSIYVNNNAIPIEKLSESLEKFKNLLKLKIAWGA 555 (704)
Q Consensus 487 ~~L~~L~~~~~~~ls~n~l~~~~~~l~~~L~~L~~L~L~~n~~~~~~~~l~~~L~~l~~L~~L~Ls~n~ 555 (704)
++|+.+. +..+ +...-...+.++++|+.+.+.++.. ...++.....|+.+.+..+.
T Consensus 334 ~~L~~i~------ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~------~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 334 EQLERIA------IPSS-VTKIPESAFSNCTALNNIEYSGSRS------QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTCCEEE------ECTT-CCBCCGGGGTTCTTCCEEEESSCHH------HHHTCBCCCCC---------
T ss_pred CCCCEEE------ECcc-cCEEhHhHhhCCCCCCEEEECCcee------ehhhhhccCCCCEEEeCCCC
Confidence 6676662 3322 2222222222667777777765421 11445666677777665443
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.96 E-value=0.13 Score=49.25 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=35.7
Q ss_pred HhccCCcccceeeeeccCCCCC-----CchhhhccccCcEEeeecccCCC----cCCccccccCCCcEEEccCccc
Q 041391 409 KELKNMSALRLLSLQGVYGIRE-----IPSSIANLSNLRVLDLRCCYYLT----KLPKGLDSLKKLTYLDISECYL 475 (704)
Q Consensus 409 ~~l~~L~~Lr~L~Ls~n~~l~~-----lP~~l~~L~~L~~LdLs~c~~l~----~lP~~i~~L~~L~~L~Ls~n~~ 475 (704)
..+.+-+.|+.|+|++|..++. +-..+..-..|+.|+|++|.... .+-..+..-+.|++|+|++|.+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3345567788888876423332 22334445667777777764321 2222233345566666666653
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.28 E-value=0.33 Score=43.02 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=18.4
Q ss_pred cCcEEeeecccCCCcCCcc-ccccCCCcEEEccCcc
Q 041391 440 NLRVLDLRCCYYLTKLPKG-LDSLKKLTYLDISECY 474 (704)
Q Consensus 440 ~L~~LdLs~c~~l~~lP~~-i~~L~~L~~L~Ls~n~ 474 (704)
+|++|+|++| .+..+|.. |..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4566666655 33444433 4555666666666654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.24 E-value=0.35 Score=46.20 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=34.5
Q ss_pred cCCCCCccEEEcCCC-CCcccchhhhccchhhHhccCCcccceeeeeccCCCC-----CCchhhhccccCcEEeeeccc
Q 041391 378 FSNLKKVKVLHLGRW-KNSAKHFVEVQGSKFLKELKNMSALRLLSLQGVYGIR-----EIPSSIANLSNLRVLDLRCCY 450 (704)
Q Consensus 378 f~~l~~Lr~L~L~~n-~l~~~~~~~~~~~~lp~~l~~L~~Lr~L~Ls~n~~l~-----~lP~~l~~L~~L~~LdLs~c~ 450 (704)
+.+-+.|+.|+|+++ .+... ....+-..+..-+.|+.|+|++|. ++ .+...+..-+.|++|+|++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~-----ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE-----RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH-----HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHH-----HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 445566666666654 44311 112344455556666677776653 32 122333344566677776653
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=77.90 E-value=14 Score=37.45 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchhhHHH----HHHHHHHhhhhc---hhhhHHHH
Q 041391 172 ESREEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFDEFME----MIINFRNKFRNL---KNESKFCL 244 (704)
Q Consensus 172 ~l~~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~~~~~----i~~~L~lSYd~L---~~~lK~cF 244 (704)
+...+|+..|+|.|++ +..++..+... ...|..+.+ +...+.-.+..+ ++..+..+
T Consensus 226 ~~~~~i~~~tgG~P~~---------------l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 288 (350)
T 2qen_A 226 NEIEEAVELLDGIPGW---------------LVVFGVEYLRN--GDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDIL 288 (350)
T ss_dssp HHHHHHHHHHTTCHHH---------------HHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHH---------------HHHHHHHHhcc--ccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 4567899999999999 54544432211 011111111 111222223333 67788888
Q ss_pred HHhcccCCCCccChHHHHHHHHHC-CCCccchhhhhhcccccccCHHHHHHHHHHHHHHCCCccceeecccCCCcCeEEe
Q 041391 245 WCFTVFPNNAVVRKRLVENWLITE-DKNRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFKM 323 (704)
Q Consensus 245 Ly~a~Fp~d~~i~~~~Li~~Wiae-G~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~m 323 (704)
..+|+ + .+...++.....+. |-+. ......+++.|++.++|.... +.|.+
T Consensus 289 ~~la~---g-~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~l~~L~~~gli~~~~--------~~y~~ 339 (350)
T 2qen_A 289 RAIAL---G-YNRWSLIRDYLAVKGTKIP-----------------EPRLYALLENLKKMNWIVEED--------NTYKI 339 (350)
T ss_dssp HHHHT---T-CCSHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHTTSEEEET--------TEEEE
T ss_pred HHHHh---C-CCCHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHhCCCEEecC--------CEEEE
Confidence 88887 2 24445554443221 1111 234568899999999997652 24555
Q ss_pred -CHHHHHHH
Q 041391 324 -DPLARLAV 331 (704)
Q Consensus 324 -HDll~dla 331 (704)
|.++++..
T Consensus 340 ~~p~~~~~~ 348 (350)
T 2qen_A 340 ADPVVATVL 348 (350)
T ss_dssp SSHHHHHHH
T ss_pred ecHHHHHHH
Confidence 66776653
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.77 E-value=29 Score=35.19 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=62.0
Q ss_pred HHHHHhcCCccccccccCccccccchhhHHHHhhhhhccccccchh-hHH-HH----HHHHH-Hhhh--hchhhhHHHHH
Q 041391 175 EEVRNFEDKVPLVNKYSSTESDGLKQSEIVELMEMFINFREKFGFD-EFM-EM----IINFR-NKFR--NLKNESKFCLW 245 (704)
Q Consensus 175 ~~iv~~c~GlPLAlkvg~~~~~w~~~~~i~~~~~~l~~~~~~~~w~-~~~-~i----~~~L~-lSYd--~L~~~lK~cFL 245 (704)
..|+..|+|.|++ +..++..+....+...|- ... ++ ...+. +.|+ .|++..+..+.
T Consensus 233 ~~i~~~t~G~P~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~ 297 (357)
T 2fna_A 233 EVVYEKIGGIPGW---------------LTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMR 297 (357)
T ss_dssp HHHHHHHCSCHHH---------------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhCCCHHH---------------HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 7899999999999 555555443211111111 100 11 11111 2221 68888999999
Q ss_pred HhcccCCCCccChHHHHHHHH-HCCC-CccchhhhhhcccccccCHHHHHHHHHHHHHHCCCccceeecccCCCcCeEE-
Q 041391 246 CFTVFPNNAVVRKRLVENWLI-TEDK-NRAEENREEKNKAVEDDTQEKNIDDILKELEREGFIVPVRKKRRKDVNNRFK- 322 (704)
Q Consensus 246 y~a~Fp~d~~i~~~~Li~~Wi-aeG~-i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL~~rsli~~~~~~~~~~~~~~~~- 322 (704)
.+|+ +. ....+....- ..|. +. ......+++.|+++++|.... ..|.
T Consensus 298 ~la~---g~--~~~~l~~~~~~~~g~~~~-----------------~~~~~~~L~~L~~~gli~~~~--------~~y~f 347 (357)
T 2fna_A 298 TLSK---CG--KWSDVKRALELEEGIEIS-----------------DSEIYNYLTQLTKHSWIIKEG--------EKYCP 347 (357)
T ss_dssp HHTT---CB--CHHHHHHHHHHHHCSCCC-----------------HHHHHHHHHHHHHTTSEEESS--------SCEEE
T ss_pred HHHc---CC--CHHHHHHHHHHhcCCCCC-----------------HHHHHHHHHHHHhCCCEEecC--------CEEEe
Confidence 9998 22 4444433211 1131 11 234567899999999997642 2355
Q ss_pred eCHHHHHH
Q 041391 323 MDPLARLA 330 (704)
Q Consensus 323 mHDll~dl 330 (704)
.|.++++.
T Consensus 348 ~~~~~~~~ 355 (357)
T 2fna_A 348 SEPLISLA 355 (357)
T ss_dssp SSHHHHHH
T ss_pred cCHHHHHh
Confidence 57788764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=47.32 E-value=21 Score=37.28 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=43.2
Q ss_pred HHHHhhhhchhhhHHHHHHhcccC--CCCccChHHHHHHHH--H---CCCCccchhhhhhcccccccCHHHHHHHHHHHH
Q 041391 228 NFRNKFRNLKNESKFCLWCFTVFP--NNAVVRKRLVENWLI--T---EDKNRAEENREEKNKAVEDDTQEKNIDDILKEL 300 (704)
Q Consensus 228 ~L~lSYd~L~~~lK~cFLy~a~Fp--~d~~i~~~~Li~~Wi--a---eG~i~~~~~~~~~~~~~~~~~~e~~~~~~~~eL 300 (704)
.+.-++..||.+.+.++..+|.+. .+..+...++...|. + .|.- .........++++|
T Consensus 298 ~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~L 362 (412)
T 1w5s_A 298 IQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK---------------PRGYTQYHIYLKHL 362 (412)
T ss_dssp --CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC---------------CCCHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC---------------CCCHHHHHHHHHHH
Confidence 455567899999999999898764 333556666655442 1 1211 01123456789999
Q ss_pred HHCCCcccee
Q 041391 301 EREGFIVPVR 310 (704)
Q Consensus 301 ~~rsli~~~~ 310 (704)
++.++|....
T Consensus 363 ~~~gli~~~~ 372 (412)
T 1w5s_A 363 TSLGLVDAKP 372 (412)
T ss_dssp HHTTSEEEEC
T ss_pred HhCCCEEeec
Confidence 9999997754
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.52 E-value=12 Score=37.97 Aligned_cols=75 Identities=9% Similarity=0.005 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhchhhhHHHHHHhcccCCCC-----------ccChHHHH----HHHHHCCCCccchhhhhhcccccccCH
Q 041391 225 MIINFRNKFRNLKNESKFCLWCFTVFPNNA-----------VVRKRLVE----NWLITEDKNRAEENREEKNKAVEDDTQ 289 (704)
Q Consensus 225 i~~~L~lSYd~L~~~lK~cFLy~a~Fp~d~-----------~i~~~~Li----~~WiaeG~i~~~~~~~~~~~~~~~~~~ 289 (704)
+...+..++..|+...+..+..++....+- .+.+..+. .+-+..|++... ..+..+
T Consensus 234 ~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~---------~~g~~~ 304 (324)
T 1hqc_A 234 ALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRT---------PRGRVP 304 (324)
T ss_dssp HHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEE---------TTEEEE
T ss_pred HHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcC---------Ccccee
Confidence 444444556667766666666544332222 13333322 235667888432 245677
Q ss_pred HHHHHHHHH-HHHHCCCccc
Q 041391 290 EKNIDDILK-ELEREGFIVP 308 (704)
Q Consensus 290 e~~~~~~~~-eL~~rsli~~ 308 (704)
.+.|..||. ++++|+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 305 TELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp CHHHHHHTTCCCCC------
T ss_pred cHHHHHHHhcCCCCCCCCCC
Confidence 888889987 8888988875
No 173
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=25.53 E-value=72 Score=27.96 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHhhcChHHHhHhhchhhhhhch---HHHHHHHhcCCCCCchhhHHHHHHHHHHhcCCcccc
Q 041391 117 KQKDNLVKKYLDKIKKDSTENREKLGELIKDHIRR---FEGILEKLSSGSIQSEQCLDESREEVRNFEDKVPLV 187 (704)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~LF~~~af~~~~~~~~~l~~l~~~iv~~c~GlPLA 187 (704)
++.+.|++.....+++..... .....+.+|+-=+ .++....+-+ +......+.+.+.+||+. |.||+
T Consensus 13 enk~el~~~W~~~~k~~~~e~-~~~isd~vye~ts~Efv~lils~i~~-~~~~~e~l~~Faer~Vql--GwpL~ 82 (136)
T 2bnl_A 13 ENQNELLQLWTDTLKELSEQE-SYQLTDQVYENISKEYIDILLLSVKD-ENAAESQISELALRAVQI--GLSMK 82 (136)
T ss_dssp HTHHHHHHHHHHHHHHHHTTS-SCCCCHHHHHHHHHHHHHHHHTCSSC-TTTTHHHHHHHHHHHHHT--TCCHH
T ss_pred HhHHHHHHHHHHHHHHhhhhh-hhhccHHHHHHhhHHHHHHHHHHccc-chhHHHHHHHHHHHHHHc--CCcHH
Confidence 566778877656566555444 4344444444222 2444444444 335678899999999997 99998
Done!