Query 041394
Match_columns 265
No_of_seqs 175 out of 364
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 2.7E-66 5.8E-71 437.9 20.4 153 99-260 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.8 5E-09 1.1E-13 71.0 3.9 45 4-48 1-45 (47)
3 PF00646 F-box: F-box domain; 98.5 7E-08 1.5E-12 65.1 2.1 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.4 2.9E-07 6.4E-12 59.5 3.7 40 7-46 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 95.5 0.016 3.4E-07 46.2 3.5 73 2-80 2-74 (109)
6 KOG2997 F-box protein FBX9 [Ge 93.7 0.031 6.8E-07 52.8 1.5 80 4-87 107-194 (366)
7 PLN03215 ascorbic acid mannose 91.7 0.16 3.4E-06 49.1 3.3 41 1-41 1-42 (373)
8 KOG2120 SCF ubiquitin ligase, 88.3 0.41 8.8E-06 45.6 3.0 43 4-46 98-140 (419)
9 KOG0274 Cdc4 and related F-box 85.7 0.53 1.2E-05 47.6 2.4 50 4-53 108-157 (537)
10 KOG4408 Putative Mg2+ and Co2+ 84.6 0.26 5.7E-06 46.9 -0.3 50 3-52 7-56 (386)
11 PF02018 CBM_4_9: Carbohydrate 78.7 27 0.00059 26.8 11.0 67 153-239 57-125 (131)
12 KOG3926 F-box proteins [Amino 73.0 2.5 5.4E-05 39.5 2.2 75 4-80 202-279 (332)
13 PF13013 F-box-like_2: F-box-l 63.7 6.6 0.00014 31.6 2.6 40 4-45 22-61 (109)
14 KOG0281 Beta-TrCP (transducin 56.9 7.9 0.00017 37.5 2.3 43 4-46 75-121 (499)
15 KOG4114 Cytochrome c oxidase a 30.5 27 0.00059 26.0 1.1 17 4-20 38-54 (73)
16 PF03242 LEA_3: Late embryogen 25.2 19 0.00041 28.2 -0.6 25 111-139 61-89 (93)
17 KOG4341 F-box protein containi 23.7 62 0.0013 32.3 2.5 42 6-47 74-115 (483)
18 PF03489 SapB_2: Saposin-like 22.5 1.2E+02 0.0025 18.6 2.9 22 9-30 13-34 (35)
19 KOG1702 Nebulin repeat protein 20.1 64 0.0014 29.1 1.7 18 153-170 203-220 (264)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=2.7e-66 Score=437.91 Aligned_cols=153 Identities=46% Similarity=0.863 Sum_probs=145.3
Q ss_pred CceeEEeeccceeeeeCCCCCceeEeecCCcccccceeEeeeeEEEEEEEEeccccCCCCeEEEEEEEEeCcccCCCCcc
Q 041394 99 GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFLEVAELVYFWFFEVNARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178 (265)
Q Consensus 99 G~kCymLsAR~L~ItWgd~~~YW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~ 178 (265)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEEEEcCceee-eeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCceEEEEEEEEEeCCcccccEEEEEEEE
Q 041394 179 QLASAIYVEGINDK-KRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDRGTLLCSLYDFDRFGTRHGLVIQGIEF 257 (265)
Q Consensus 179 pv~~~v~~~~g~~~-~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~ev~fs~~e~~~~~wK~GLiv~GieI 257 (265)
||+++|++++++.. +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+||||
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI 151 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI 151 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence 99999999987642 4456666 6689999999999999999889999999999999999999999999999
Q ss_pred Eec
Q 041394 258 RPK 260 (265)
Q Consensus 258 RPk 260 (265)
|||
T Consensus 152 RPK 154 (154)
T PF14299_consen 152 RPK 154 (154)
T ss_pred ecC
Confidence 998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.80 E-value=5e-09 Score=71.01 Aligned_cols=45 Identities=29% Similarity=0.562 Sum_probs=40.4
Q ss_pred ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccC
Q 041394 4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFL 48 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fL 48 (265)
+.+||+|++.+|+++++|.|.+++++|||.|+.++.++.+|.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 468999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.48 E-value=7e-08 Score=65.12 Aligned_cols=44 Identities=36% Similarity=0.613 Sum_probs=39.1
Q ss_pred ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394 4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f 47 (265)
+.+||++++.+|++++++.|.++++.||+.|+.+++++.+|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 57899999999999999999999999999999999999999875
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.41 E-value=2.9e-07 Score=59.45 Aligned_cols=40 Identities=40% Similarity=0.540 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhc
Q 041394 7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEK 46 (265)
Q Consensus 7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~ 46 (265)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=95.47 E-value=0.016 Score=46.24 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=58.8
Q ss_pred CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394 2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH 80 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~ 80 (265)
..++++|.++|.-||...+|....++..-|+-+ +-++|.+|.+|+-.||+.-..... +. ...|-+++|..+.+
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~~---~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-PK---EPESWRELYEKLKK 74 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-cc---ccchHHHHHHHHHH
Confidence 568899999999999999999999999998765 667999999999999975222211 11 34588999998874
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.72 E-value=0.031 Score=52.79 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=56.4
Q ss_pred ccCCcHHHHHHHHhcCC-----hHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCc--cccCCCCHHHHHH
Q 041394 4 TNALPVECISHIISLTT-----PRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSS--SLITSLSKKDLYF 76 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~-----P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~--~~~~~~skKely~ 76 (265)
+..||++.+-.|+...= -++.-++|+||+.|+-+|..|.+|..+|=.-+..-+-...+-. +. -..|-+++|+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sk-y~~SWR~Mfl 185 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSK-YYTSWREMFL 185 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhH-HHhHHHHHHh
Confidence 56899999999887544 5999999999999999999999999988765553222221100 01 1346777876
Q ss_pred hhccCC-eEecC
Q 041394 77 HLCHYP-IFINN 87 (265)
Q Consensus 77 ~L~~~p-~lld~ 87 (265)
. +| |.+||
T Consensus 186 ~---RpRvrFdG 194 (366)
T KOG2997|consen 186 E---RPRVRFDG 194 (366)
T ss_pred h---Ccceeecc
Confidence 5 33 66665
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.71 E-value=0.16 Score=49.14 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCcccCCcHHHHHHHHhcC-ChHHHHHHhhcCHHHHhhhcch
Q 041394 1 MDITNALPVECISHIISLT-TPRDACRLAVVSPIFKSAADSD 41 (265)
Q Consensus 1 ~~~~~~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa~sd 41 (265)
|..-.+||+|.+..|..++ +..|..|+++||++||+|+...
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 4556789999999999998 7999999999999999998863
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.29 E-value=0.41 Score=45.58 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=41.0
Q ss_pred ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhc
Q 041394 4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEK 46 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~ 46 (265)
+++||++.+..|.|.+--.|.-+++.||+.|...|....+|..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 5899999999999999999999999999999999999999954
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.70 E-value=0.53 Score=47.55 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=44.9
Q ss_pred ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccc
Q 041394 4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYK 53 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~ 53 (265)
+..||-+..-.|+++++|++.+++++||+.|+..++.|.+|.+.+.+...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 55799999999999999999999999999999999999999877665544
No 10
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=84.64 E-value=0.26 Score=46.92 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=45.8
Q ss_pred cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCccc
Q 041394 3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDY 52 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy 52 (265)
.++.+|.+.+..+++++.++++.+.|+||+..+..++-+.+|++++-.++
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 46789999999999999999999999999999999999999999985544
No 11
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=78.72 E-value=27 Score=26.75 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=44.0
Q ss_pred ccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCc-eee-eeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCC
Q 041394 153 ILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGI-NDK-KRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGD 230 (265)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g-~~~-~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~ 230 (265)
.|.||.+|.+.|-+|.... .++.+.+...++ ... .... . ..-.+.|.+++ ++|... .+
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~W~~~s-~~ft~~-~~ 116 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSPYNWYTGQ-T-----------VTITGEWTKYS-GTFTAP-SD 116 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTTEEEEEEE-E-----------EEETSSEEEEE-EEEEEE-SS
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCCcEEEEEE-E-----------EECCCCcEEEE-EEEEEC-CC
Confidence 3559999999999999874 677777777666 220 1110 1 11248999999 589887 44
Q ss_pred ceEEEEEEE
Q 041394 231 RGTLLCSLY 239 (265)
Q Consensus 231 ~~ev~fs~~ 239 (265)
...+.|.+.
T Consensus 117 ~~~~~l~~~ 125 (131)
T PF02018_consen 117 DDTVRLYFE 125 (131)
T ss_dssp CEEEEEEEE
T ss_pred CceEEEEEE
Confidence 556666543
No 12
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=72.96 E-value=2.5 Score=39.50 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=53.4
Q ss_pred ccCCcHHHHHHHHhcCC-hHHHHHHhhcCHHHHhhhcchhhhhccCCccccc--ccccccCCccccCCCCHHHHHHhhcc
Q 041394 4 TNALPVECISHIISLTT-PRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKL--IISNSVSSSSLITSLSKKDLYFHLCH 80 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~--il~~~~~~~~~~~~~skKely~~L~~ 80 (265)
|-|||++|+..||-+++ -+|.--+|.|-.+..-.++.+.+|.+.+--.+.+ |-....... . .-.--|++|+.|-.
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k-~-~q~dWkqmyf~L~r 279 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSK-K-GQKDWKQMYFQLRR 279 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc-c-cchhHHHHHHHHHH
Confidence 56999999999998865 8999999999999999999999999877644331 221111000 0 11235788888863
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=63.75 E-value=6.6 Score=31.57 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=35.1
Q ss_pred ccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhh
Q 041394 4 TNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWE 45 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~ 45 (265)
+.|||+|.+..|...-.+.+...+...++++|.+.+. .|.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 6789999999999999999999999999999887444 554
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=56.90 E-value=7.9 Score=37.52 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=37.2
Q ss_pred ccCCc----HHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhc
Q 041394 4 TNALP----VECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEK 46 (265)
Q Consensus 4 ~~~Lp----e~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~ 46 (265)
++.|| +.....|+|++...+.|..-.||+.++.+-+..-+|.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35689 88899999999999999999999999988877777643
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=27 Score=25.97 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.5
Q ss_pred ccCCcHHHHHHHHhcCC
Q 041394 4 TNALPVECISHIISLTT 20 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~ 20 (265)
+.+|||+|++.+=.|+.
T Consensus 38 ~~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 38 LKDVPEECIALMKAFLD 54 (73)
T ss_pred cccCcHHHHHHHHHHHH
Confidence 35799999999998875
No 16
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=25.23 E-value=19 Score=28.21 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=17.3
Q ss_pred eeeeCCCCC--ceeEeecCCcccccc--eeEee
Q 041394 111 CIGWGSTPS--CWKWTSLPESRFLEV--AELVY 139 (265)
Q Consensus 111 ~ItWgd~~~--YW~W~~~~~SrF~EV--AeL~~ 139 (265)
...|.-||. ||+ |+.+|.|| |||++
T Consensus 61 ~~~W~pDPvTGyyr----Pen~~~EiD~AeLR~ 89 (93)
T PF03242_consen 61 KSSWMPDPVTGYYR----PENHFGEIDAAELRA 89 (93)
T ss_pred ccccccCCCCcccc----CCCCCCCCCHHHHHH
Confidence 466777776 776 77788764 77753
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.71 E-value=62 Score=32.28 Aligned_cols=42 Identities=21% Similarity=0.481 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394 6 ALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47 (265)
Q Consensus 6 ~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f 47 (265)
.||.+..-.|.|++.-.-.||.|.+|+.|-.-|-+-.-|.+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 699999999999999999999999999999999999999654
No 18
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=22.52 E-value=1.2e+02 Score=18.59 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCChHHHHHHhhc
Q 041394 9 VECISHIISLTTPRDACRLAVV 30 (265)
Q Consensus 9 e~ci~~il~~~~P~d~~r~a~v 30 (265)
+..+..+.+.++|.++|..-.+
T Consensus 13 ~~ii~~l~~~~~p~~iC~~i~~ 34 (35)
T PF03489_consen 13 PQIIQLLEKQLDPQQICTKIGL 34 (35)
T ss_dssp HHHHHHHHTTSTHHHHHHHTTS
T ss_pred HHHHHHHHhcCChHHHHHHcCC
Confidence 4567888899999999986543
No 19
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=20.15 E-value=64 Score=29.14 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=12.8
Q ss_pred ccCCCCeEEEEEEEEeCc
Q 041394 153 ILSHRTNYAAYLVFKFGK 170 (265)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~ 170 (265)
--++|.+|.|++.|.-.|
T Consensus 203 ~~~~gktyra~ydysaqd 220 (264)
T KOG1702|consen 203 KSCTGKTYRAFYDYSAQD 220 (264)
T ss_pred cCCCCccchhhccCcccC
Confidence 345788999988766554
Done!