Query 041394
Match_columns 265
No_of_seqs 175 out of 364
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.5E-09 8.5E-14 73.1 4.5 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.8 3.7E-09 1.3E-13 97.2 4.9 78 2-79 3-93 (312)
3 2e31_A FBS1, F-box only protei 98.2 1.1E-06 3.9E-11 80.5 4.8 81 2-87 49-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.0 3.7E-06 1.3E-10 77.2 4.0 48 2-49 17-64 (445)
5 3v7d_B Cell division control p 97.7 1.1E-05 3.9E-10 73.8 2.5 46 3-48 14-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.7 9.9E-06 3.4E-10 74.4 1.7 49 3-51 10-62 (435)
7 2ast_B S-phase kinase-associat 97.1 0.00035 1.2E-08 61.9 4.2 46 2-47 7-52 (336)
8 2p1m_B Transport inhibitor res 95.5 0.0078 2.7E-07 57.2 3.7 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 94.1 0.027 9.2E-07 53.5 3.3 32 6-37 15-47 (592)
10 1dyo_A Endo-1,4-beta-xylanase 93.6 1.7 5.7E-05 35.3 13.0 96 152-264 63-160 (160)
11 4hfx_A Transcription elongatio 91.1 0.11 3.8E-06 39.9 2.5 64 7-80 13-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 64.4 61 0.0021 31.2 11.7 94 151-261 77-170 (540)
13 1gui_A Laminarinase 16A; carbo 38.5 1.3E+02 0.0046 23.1 12.1 84 152-260 67-155 (155)
14 3tes_A Tencon; fibronectin typ 28.3 85 0.0029 22.2 4.7 37 149-189 57-93 (98)
15 3b83_A Ten-D3; beta sheet, com 24.1 1.2E+02 0.0039 21.3 4.8 37 149-189 57-93 (100)
16 3qht_C Monobody YSMB-1; fibron 23.2 81 0.0028 22.0 3.7 35 149-183 60-94 (97)
17 2lde_A Sarafotoxin-I3; endothe 20.0 20 0.00067 20.8 -0.2 10 110-119 17-26 (26)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=2.5e-09 Score=73.06 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=40.2
Q ss_pred cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394 3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f 47 (265)
.+++||++++.+|+++++|+|.+++++|||.|+.++.++.+|+++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 578999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.78 E-value=3.7e-09 Score=97.18 Aligned_cols=78 Identities=19% Similarity=0.358 Sum_probs=62.2
Q ss_pred CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccc---cccccccCCcc----------ccCC
Q 041394 2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYK---LIISNSVSSSS----------LITS 68 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~---~il~~~~~~~~----------~~~~ 68 (265)
|.|++||.+++.+|+||++|+|+|++++||+.||.+|+++.+|+.||-.|++ +|-..+.|... ...+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~ 82 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF 82 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence 5789999999999999999999999999999999999999999999987744 44443332210 0014
Q ss_pred CCHHHHHHhhc
Q 041394 69 LSKKDLYFHLC 79 (265)
Q Consensus 69 ~skKely~~L~ 79 (265)
..++.+|.+=|
T Consensus 83 ~~~~~~y~~~~ 93 (312)
T 3l2o_B 83 FDYMAVYRMCC 93 (312)
T ss_dssp CCHHHHHHHHC
T ss_pred ccHHHHHHhcC
Confidence 56899999987
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.18 E-value=1.1e-06 Score=80.50 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=60.8
Q ss_pred CcccCCcHHHHHHHHhcCChHHHH-HHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394 2 DITNALPVECISHIISLTTPRDAC-RLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH 80 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~-r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~ 80 (265)
..+..||++++..||+++.|++.+ |+++|||.||..++++.+|.+.|... .+......+. +..+-|.+|+.--.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~---~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADE---ERDHWQQFYFLSKR 123 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCC---CCCChhhhheheec
Confidence 467899999999999999999999 99999999999999999999988765 1221111110 23568999987433
Q ss_pred CCeEecC
Q 041394 81 YPIFINN 87 (265)
Q Consensus 81 ~p~lld~ 87 (265)
.-+||.+
T Consensus 124 gRNLL~N 130 (297)
T 2e31_A 124 RRNLLRN 130 (297)
T ss_dssp CCCCSSC
T ss_pred ccceeec
Confidence 4466654
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.98 E-value=3.7e-06 Score=77.20 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=44.9
Q ss_pred CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCC
Q 041394 2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLP 49 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP 49 (265)
..++.||++++.+|+++++|+|.|++++||+.|+.+++++.+|.+++-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 457899999999999999999999999999999999999999998764
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.71 E-value=1.1e-05 Score=73.85 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=42.9
Q ss_pred cccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcc-hhhhhccC
Q 041394 3 ITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADS-DLVWEKFL 48 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-d~vW~~fL 48 (265)
-+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35679999999999999999999999999999999988 99999886
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.69 E-value=9.9e-06 Score=74.39 Aligned_cols=49 Identities=18% Similarity=0.436 Sum_probs=45.0
Q ss_pred cccCCcHH----HHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcc
Q 041394 3 ITNALPVE----CISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSD 51 (265)
Q Consensus 3 ~~~~Lpe~----ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~d 51 (265)
-+..||++ ++.+|+++++|+|.|++++|||.|+.+++++.+|.+++...
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 35679999 99999999999999999999999999999999999887654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.08 E-value=0.00035 Score=61.93 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=41.5
Q ss_pred CcccCCcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhcc
Q 041394 2 DITNALPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKF 47 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~f 47 (265)
..+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 3578999999999999999999999999999999999877778653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.50 E-value=0.0078 Score=57.21 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=29.4
Q ss_pred CcccCCcHHHHHHHHhcCC-hHHHHHHhhcCHHHHhh
Q 041394 2 DITNALPVECISHIISLTT-PRDACRLAVVSPIFKSA 37 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~a 37 (265)
..+++||++++.+|+++++ ++|++++|+||+.|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4578999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.06 E-value=0.027 Score=53.54 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHhcC-ChHHHHHHhhcCHHHHhh
Q 041394 6 ALPVECISHIISLT-TPRDACRLAVVSPIFKSA 37 (265)
Q Consensus 6 ~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~a 37 (265)
+||++++.+|++++ +++|+++++.|||.|+.+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 79999999999999 899999999999999987
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=93.60 E-value=1.7 Score=35.30 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=59.2
Q ss_pred cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEc--CceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 041394 152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVE--GINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG 229 (265)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~--~g~~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~ 229 (265)
..|.||++|.+..-+|+.+.. ....+.+++... +|.. +...+.. -....++|.+++-|.|.....
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~ 129 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTIDM-------KTVGPNQWVHLYNPQYRIPSD 129 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEEE-------EEECSSCCEEEEEEEEECCTT
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEee-------EEEcCCccEEEECcEEEeCCC
Confidence 478999999999999987632 223444555442 2332 1111211 012358999999889998654
Q ss_pred CceEEEEEEEEEeCCcccccEEEEEEEEEeccCCC
Q 041394 230 DRGTLLCSLYDFDRFGTRHGLVIQGIEFRPKKMLM 264 (265)
Q Consensus 230 ~~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~~~~ 264 (265)
. ..+.+- .|. ..-..=+.|+.|.|.|....|
T Consensus 130 ~-~~~~ly-ve~--~~~~~d~yiDdv~i~~~g~~~ 160 (160)
T 1dyo_A 130 A-TDMYVY-VET--ADDTINFYIDEAIGAVAGTVI 160 (160)
T ss_dssp C-EEEEEE-EEE--SSCCCCEEEEEEEEEETTCCC
T ss_pred C-CEEEEE-EEC--CCCCccEEEEEEEEEeCcccC
Confidence 2 334332 233 234555899999999987654
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=91.14 E-value=0.11 Score=39.90 Aligned_cols=64 Identities=17% Similarity=0.374 Sum_probs=40.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHhhcCHHHHhhhcchhhhhccCCcccccccccccCCccccCCCCHHHHHHhhcc
Q 041394 7 LPVECISHIISLTTPRDACRLAVVSPIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLITSLSKKDLYFHLCH 80 (265)
Q Consensus 7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sd~vW~~fLP~dy~~il~~~~~~~~~~~~~skKely~~L~~ 80 (265)
.|-+.+.-||...+|....++-.-|+.+ .-++|-+|.+++-.||..-- +. ...|-+++|.+|.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~ 76 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD 76 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence 6888899999999999999999999966 78899999999999998332 11 45689999999985
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=64.38 E-value=61 Score=31.17 Aligned_cols=94 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred ccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCC
Q 041394 151 TRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGD 230 (265)
Q Consensus 151 ~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~ 230 (265)
+..|.||++|....-+|. + |=...++.+++...++........++.. -....++|.+++ |.|....+
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~-------~~~~~g~Wt~L~-g~ft~p~~- 143 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIAT-------KDVVAGEWTEIS-AKYKAPKT- 143 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEE-------EEEETTCCEEEE-EEEECCTT-
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeE-------EEEeCCeeEEEE-eEEEecCC-
Confidence 457899999999999985 2 2123456655554221100111111110 112368999999 79987543
Q ss_pred ceEEEEEEEEEeCCcccccEEEEEEEEEecc
Q 041394 231 RGTLLCSLYDFDRFGTRHGLVIQGIEFRPKK 261 (265)
Q Consensus 231 ~~ev~fs~~e~~~~~wK~GLiv~GieIRPk~ 261 (265)
...+++-+ |.. -..-+.|+.|.|.++.
T Consensus 144 ~~~~~lyv-e~~---~~~~f~vDdvsl~~~~ 170 (540)
T 2w5f_A 144 AVNITLSI-TTD---STVDFIFDDVTITRKG 170 (540)
T ss_dssp EEEEEEEE-EES---SCCCEEEEEEEEEEC-
T ss_pred CeEEEEEE-EcC---CCCCEEEEEEEEecCc
Confidence 23454433 332 3456899999997654
No 13
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=38.49 E-value=1.3e+02 Score=23.07 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=48.8
Q ss_pred cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCce--eeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 041394 152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGIN--DKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG 229 (265)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~--~~~~~~v~L~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~ 229 (265)
-.|.+|.+|.+.|..+-... .++.+.+.-.++. ......+.+ ...|-+++. +|.....
T Consensus 67 i~l~~G~~Y~lsf~aka~~~------~~i~v~l~~~~~~~~~~~~~~~~l-------------t~~w~~~~~-~ft~~~~ 126 (155)
T 1gui_A 67 IGLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTVNL-------------TADWQTFTF-TYTHPDD 126 (155)
T ss_dssp EECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEEEE-------------CSSCEEEEE-EEECCTT
T ss_pred EEeCCCCEEEEEEEEEeCCC------CcEEEEEEcCCCChHHheeccEee-------------CCCCEEEEE-EEEcCCC
Confidence 35779999999998887631 3444444322111 101122222 347999986 7776553
Q ss_pred --CceEEEEEEEEEeCCcc-cccEEEEEEEEEec
Q 041394 230 --DRGTLLCSLYDFDRFGT-RHGLVIQGIEFRPK 260 (265)
Q Consensus 230 --~~~ev~fs~~e~~~~~w-K~GLiv~GieIRPk 260 (265)
....+.|.+ |.. -+.+.|+-|.+.|.
T Consensus 127 t~~~~~l~f~~-----g~~~~~~v~iD~VsL~P~ 155 (155)
T 1gui_A 127 ADEVVQISFEL-----GEGTATTIYFDDVTVSPQ 155 (155)
T ss_dssp SCSEEEEEEEC-----CSSCCCEEEEEEEEEEEC
T ss_pred CCceEEEEEEC-----CCCCCceEEEEEEEEEeC
Confidence 223444443 222 26699999999984
No 14
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=28.29 E-value=85 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=25.6
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCc
Q 041394 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGI 189 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g 189 (265)
+...-|.|+|.|.+.+.-.-.. |- ..|+...+..+|.
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~~ 93 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGGH 93 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSSC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCcc
Confidence 4445699999999877554432 43 4888888887553
No 15
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=24.09 E-value=1.2e+02 Score=21.32 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=24.7
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCc
Q 041394 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASAIYVEGI 189 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g 189 (265)
+....|.|+|.|.+.+.-.-. .|.. .|+..+..+.-+
T Consensus 57 ~~i~~L~p~t~Y~~~V~A~n~---~g~s-~p~~~~~~~~~~ 93 (100)
T 3b83_A 57 LTLTNLEPNTTYEIRIVARNG---QQYS-PPVSTTFTTGSL 93 (100)
T ss_dssp EEECSCCTTCEEEEEEEEEET---TEEC-CCEEEEEECCCC
T ss_pred EEECCCCCCCEEEEEEEEEeC---CCCC-CCEEEEEEEEee
Confidence 344579999999987765433 3654 777777666543
No 16
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=23.15 E-value=81 Score=22.00 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=20.3
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEE
Q 041394 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLASA 183 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~ 183 (265)
+.-.-|.|+|.|.+.+.-.-..+..-....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEETTEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCccCCCCCCCEEEe
Confidence 44457999999988766544432111223565544
No 17
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=20.05 E-value=20 Score=20.76 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=6.3
Q ss_pred eeeeeCCCCC
Q 041394 110 LCIGWGSTPS 119 (265)
Q Consensus 110 L~ItWgd~~~ 119 (265)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 5677777764
Done!