BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041395
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 26/240 (10%)

Query: 32  RWLNAHATYYGADQ---SPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQL 88
           +WL A AT+YG      +P   GGACG  N     +   TA  +  +F+ G+ CG+CY++
Sbjct: 18  KWLTARATWYGQPNGAGAPDN-GGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 89  MCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG----- 143
            C  +  P+      TV +T  N+ P   +         HFD+S  AF  +A+ G     
Sbjct: 77  RC--KEKPECSGNPVTVYITDMNYEPIAPY---------HFDLSGKAFGSLAKPGLNDKI 125

Query: 144 -NEGIVPILYKRVACKRRGG----VHFTLKGQSNFNMVMFSNVGGSGDLKGAWVRGSRTK 198
            + GI+ + ++RV CK   G     H       N+  V+   V   GD+    ++   + 
Sbjct: 126 RHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSA 185

Query: 199 TWIAMQRNWGANWSSSVDLRIQ-RLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY 257
            W  M+ +WGA W       ++   S +LT   G+  +  +V+P++W     ++S  QFY
Sbjct: 186 EWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQFY 245


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 26/237 (10%)

Query: 31  NRWLNAHATYYGADQS--PSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQL 88
           ++WL+A +T+YG      P   GGACGY +     F   T   +  +F+ G+ CG+C+++
Sbjct: 17  DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEI 76

Query: 89  MCDYRADPKWCLRHATVT-LTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNE-- 145
            C     P+ C     V  +T  N  P   +         HFD+S  AF  +A++G+E  
Sbjct: 77  KC---TKPEACSGEPVVVHITDDNEEPIAPY---------HFDLSGHAFGAMAKKGDEQK 124

Query: 146 ----GIVPILYKRVACKRRGGVHFTL---KGQS-NFNMVMFSNVGGSGDLKGAWVRGSRT 197
               G + + ++RV CK   G   T    KG + N+  ++   V G GD+    ++    
Sbjct: 125 LRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGK 184

Query: 198 KTWIAMQRNWGANWS-SSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSR 253
             WI ++ +WGA W   + D      + + T   G      +V+P  W    ++ S+
Sbjct: 185 DKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYESK 241


>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
 pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
          Length = 214

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 198 KTWIAMQRNWGANWSSSVDLRIQRLS 223
           KT++ ++ +WG NW     +RI+R S
Sbjct: 168 KTYLLLKNSWGPNWGEKGYIRIKRAS 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,584,549
Number of Sequences: 62578
Number of extensions: 359727
Number of successful extensions: 835
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 4
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)