Query 041395
Match_columns 257
No_of_seqs 151 out of 989
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 8.8E-73 1.9E-77 502.0 28.4 226 29-256 26-256 (256)
2 PLN00050 expansin A; Provision 100.0 1.5E-71 3.2E-76 492.3 26.0 237 13-256 6-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 1.5E-67 3.2E-72 466.5 26.3 227 16-257 8-247 (247)
4 PLN03024 Putative EG45-like do 100.0 1E-27 2.2E-32 192.9 11.9 105 31-154 19-125 (125)
5 COG4305 Endoglucanase C-termin 99.9 4.4E-26 9.5E-31 189.9 19.3 197 30-257 27-231 (232)
6 smart00837 DPBB_1 Rare lipopro 99.9 3E-26 6.5E-31 173.8 7.9 82 68-152 1-87 (87)
7 PLN00115 pollen allergen group 99.9 3.8E-25 8.2E-30 176.0 11.5 89 162-256 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.8E-23 3.8E-28 157.1 10.4 78 163-241 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 7.1E-19 1.5E-23 130.5 6.2 76 68-152 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 8.3E-10 1.8E-14 86.7 4.8 62 77-157 55-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 1.8E-05 3.9E-10 63.3 9.4 67 67-156 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.8 0.00021 4.5E-09 62.2 10.7 96 36-160 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00022 4.7E-09 63.1 10.2 59 83-158 120-178 (233)
14 PRK10672 rare lipoprotein A; P 96.9 0.012 2.6E-07 55.4 11.4 58 81-155 114-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 92.6 0.15 3.2E-06 44.4 3.9 55 68-135 70-124 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 82.8 1.7 3.7E-05 35.2 3.8 52 182-233 37-106 (131)
17 cd02110 SO_family_Moco_dimer S 76.6 5.3 0.00012 37.1 5.4 53 183-235 234-295 (317)
18 cd02854 Glycogen_branching_enz 71.3 11 0.00024 28.9 5.2 48 187-235 16-76 (99)
19 cd02113 bact_SoxC_Moco bacteri 65.9 11 0.00025 35.2 5.0 52 182-233 235-294 (326)
20 PLN00177 sulfite oxidase; Prov 60.9 23 0.00049 34.1 6.2 24 182-205 293-316 (393)
21 cd02114 bact_SorA_Moco sulfite 57.3 20 0.00044 34.0 5.2 51 183-233 286-345 (367)
22 cd02111 eukary_SO_Moco molybdo 54.5 34 0.00074 32.5 6.2 53 182-234 273-340 (365)
23 cd02112 eukary_NR_Moco molybdo 47.7 44 0.00096 32.0 5.8 49 185-233 300-364 (386)
24 TIGR02588 conserved hypothetic 41.7 1.2E+02 0.0027 24.4 6.6 26 169-195 48-73 (122)
25 PF10417 1-cysPrx_C: C-termina 39.6 16 0.00035 23.4 1.0 11 238-248 10-20 (40)
26 cd02855 Glycogen_branching_enz 38.1 1.2E+02 0.0025 22.5 5.9 47 201-251 49-98 (106)
27 cd02860 Pullulanase_N_term Pul 37.7 1.3E+02 0.0028 22.4 6.0 33 201-233 39-73 (100)
28 PLN02252 nitrate reductase [NA 35.5 96 0.0021 33.1 6.5 28 179-206 366-393 (888)
29 PF02922 CBM_48: Carbohydrate- 34.6 1E+02 0.0022 21.9 4.8 50 187-236 22-80 (85)
30 PRK13701 psiB plasmid SOS inhi 34.0 1E+02 0.0023 25.4 5.1 42 146-191 58-103 (144)
31 cd02859 AMPKbeta_GBD_like AMP- 31.2 1.9E+02 0.004 20.9 5.7 48 187-237 12-62 (79)
32 cd02861 E_set_proteins_like E 30.4 1.1E+02 0.0023 22.1 4.4 45 188-234 14-60 (82)
33 KOG4192 Uncharacterized conser 29.0 82 0.0018 25.5 3.7 79 122-205 37-124 (134)
34 KOG0427 Ubiquitin conjugating 24.4 80 0.0017 25.9 2.9 45 210-257 26-70 (161)
35 PF08770 SoxZ: Sulphur oxidati 22.8 1.6E+02 0.0035 22.6 4.3 17 221-237 81-97 (100)
36 PF03100 CcmE: CcmE; InterPro 22.7 93 0.002 24.9 3.0 30 220-249 71-101 (131)
37 PRK13159 cytochrome c-type bio 22.2 1E+02 0.0022 25.9 3.2 28 221-248 73-101 (155)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=8.8e-73 Score=502.01 Aligned_cols=226 Identities=55% Similarity=1.145 Sum_probs=213.4
Q ss_pred CCCCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEEE
Q 041395 29 QVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLT 108 (257)
Q Consensus 29 ~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~ 108 (257)
+.++|.+|+|||||++|++++++|||||+++..++++.++||+|++||++|++||+||||+|....++++|.+|++|+|+
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 46689999999999999999999999999988889999999999999999999999999999643347789888899999
Q ss_pred EecCCCCC-----CCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEeeecCceEEEEcCccceeEEEEEeeCC
Q 041395 109 ATNFCPPN-----NHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLKGQSNFNMVMFSNVGG 183 (257)
Q Consensus 109 VtD~Cp~~-----~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~~~g~i~~~v~ss~~w~~v~v~n~~g 183 (257)
|||+||++ +|++||++++.|||||.+||.+||.. ..|+++|+||||+|+++|+|+|++++++||++|+|.|++|
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~-~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G 184 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIY-RGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGG 184 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhh-cCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCC
Confidence 99999975 68999998899999999999999998 8999999999999999999999999999999999999999
Q ss_pred CcceeEEEEEecCCCCceEccccccceEEeCCCCCCcceEEEEEEeCCcEEEEceeeCCCCCCCeEEecccCC
Q 041395 184 SGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQF 256 (257)
Q Consensus 184 ~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G~~y~s~vqf 256 (257)
++||++||||++++ +|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|++.+||
T Consensus 185 ~gdV~~v~Ik~~~~-~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 185 AGSIQSVSIKGSKT-GWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred CccEEEEEEecCCC-CeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 99999999999875 8999999999999999888878999999999999999999999999999999999998
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.5e-71 Score=492.32 Aligned_cols=237 Identities=49% Similarity=1.007 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHhhcccCCCCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCC
Q 041395 13 WHFFLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDY 92 (257)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~ 92 (257)
+.++.||+++-+.+.. ..+|..++|||||++|++++++|||||+++..++++.++||+|++||++|++||+||||+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~ 84 (247)
T PLN00050 6 YTIVALLSILKIVEGY-GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVN 84 (247)
T ss_pred hhHHHHhhhheecccc-CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCC
Confidence 4566677776554433 457999999999999999999999999998888999999999999999999999999999976
Q ss_pred CCCCccccCCCEEEEEEecCCCCC-----CCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEeeecCceEEEE
Q 041395 93 RADPKWCLRHATVTLTATNFCPPN-----NHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTL 167 (257)
Q Consensus 93 ~~~~~~C~~g~sv~V~VtD~Cp~~-----~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~~~g~i~~~v 167 (257)
. +.+|.++ +|+|+|||+||++ ++++||++++.|||||.+||.+||.. ..|+++|+||||+|+++|+|+|++
T Consensus 85 ~--~~~C~~g-sV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~-~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 85 D--NIWCLPG-SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQY-KAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred C--CcccCCC-cEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhh-cCCeeeeEEEEecCcCCCCeEEEE
Confidence 2 5679876 9999999999974 47899998899999999999999999 899999999999999999999999
Q ss_pred cCccceeEEEEEeeCCCcceeEEEEEecCCCCceEccccccceEEeCCCCCCcceEEEEEEeCCcEEEEceeeCCCCCCC
Q 041395 168 KGQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFG 247 (257)
Q Consensus 168 ~ss~~w~~v~v~n~~g~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G 247 (257)
++++||++|+|.|++|+++|++|||+++++ +|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~-~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G 239 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKS-NWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFG 239 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCCC-CeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCC
Confidence 999999999999999999999999999765 8999999999999999888878999999999999999999999999999
Q ss_pred eEEecccCC
Q 041395 248 QTFSSRNQF 256 (257)
Q Consensus 248 ~~y~s~vqf 256 (257)
++|++. ||
T Consensus 240 ~ty~~~-~f 247 (247)
T PLN00050 240 QTYTGM-QF 247 (247)
T ss_pred CeEecC-cC
Confidence 999995 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.5e-67 Score=466.46 Aligned_cols=227 Identities=26% Similarity=0.530 Sum_probs=198.6
Q ss_pred HHHHHHHHhhcccCCCCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCC
Q 041395 16 FLILSMGFVGINGQVNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRAD 95 (257)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~ 95 (257)
+|+++++++......++|.+++|||||+++++|+++|||||+++..+.++.++||++ +||++|++||+||||+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~--- 83 (247)
T PLN03023 8 CFLCVIVLLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA--- 83 (247)
T ss_pred HHHHHHHHhhhhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC---
Confidence 334444444444555679999999999999999999999999988888999999999 9999999999999999976
Q ss_pred CccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCC------CCCeEEEEEEEEEeeecC-ceEEEEc
Q 041395 96 PKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG------NEGIVPILYKRVACKRRG-GVHFTLK 168 (257)
Q Consensus 96 ~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~------~~G~~~i~~r~V~C~~~g-~i~~~v~ 168 (257)
+++|.++ +|+|+|||+||. + +.|||||.+||.+||+++ ..|+++|+||||+|+++| +|+|+|.
T Consensus 84 ~~~C~~~-~v~V~iTd~~~~------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~ 153 (247)
T PLN03023 84 PNLCSDD-GVNVVVTDYGEG------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVH 153 (247)
T ss_pred CCccCCC-CeEEEEEeCCCC------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEe
Confidence 7789876 899999999985 3 589999999999999842 569999999999999999 9999996
Q ss_pred --Cc-cceeEEEEEeeCCCcceeEEEEEecCCCCceEccccccceEEeCCCCCCcceEEEE--EEeCCcE-EEEceeeCC
Q 041395 169 --GQ-SNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKL--TLVDGRT-QLFFNVVPS 242 (257)
Q Consensus 169 --ss-~~w~~v~v~n~~g~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~l~g~p~~~Rv--T~~~G~~-vv~~~vip~ 242 (257)
++ ++|++|+|.|++|++||++||||++++.+|++|+|+||++|+++.+|+| ||+||+ |+.+|++ |+++||||+
T Consensus 154 ~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa 232 (247)
T PLN03023 154 EHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPS 232 (247)
T ss_pred cCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCC
Confidence 33 6789999999999999999999997767999999999999999988987 555555 4557754 899999999
Q ss_pred CCCCCeEEecccCCC
Q 041395 243 SWSFGQTFSSRNQFY 257 (257)
Q Consensus 243 ~w~~G~~y~s~vqf~ 257 (257)
+|++|+||++++||.
T Consensus 233 ~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 233 DWKAGVAYDSNIQLD 247 (247)
T ss_pred CCCCCCEEecccccC
Confidence 999999999999995
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1e-27 Score=192.95 Aligned_cols=105 Identities=32% Similarity=0.581 Sum_probs=87.2
Q ss_pred CCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCC--CCccccCCCEEEEE
Q 041395 31 NRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRA--DPKWCLRHATVTLT 108 (257)
Q Consensus 31 ~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~--~~~~C~~g~sv~V~ 108 (257)
+...+|+||||++. ..||| |++ .+++.++||+|+.+|++|++||+||||+|.+.. .+.+|. +++|+|+
T Consensus 19 ~~~~~G~AT~Y~~~-----~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~-gksV~V~ 88 (125)
T PLN03024 19 SYATPGIATFYTSY-----TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT-GKSVTVK 88 (125)
T ss_pred hcccceEEEEeCCC-----CCccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-CCeEEEE
Confidence 34567999999864 34799 544 346789999999999999999999999997632 134786 5699999
Q ss_pred EecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEE
Q 041395 109 ATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKR 154 (257)
Q Consensus 109 VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~ 154 (257)
|+|+||+. |. .|||||++||.+||++ ..|+++|+|.+
T Consensus 89 VtD~CP~~-----C~---~~~DLS~~AF~~iA~~-~aG~v~V~y~~ 125 (125)
T PLN03024 89 IVDHCPSG-----CA---STLDLSREAFAQIANP-VAGIINIDYIP 125 (125)
T ss_pred EEcCCCCC-----CC---CceEcCHHHHHHhcCc-cCCEEEEEEeC
Confidence 99999952 75 5999999999999999 89999999974
No 5
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.4e-26 Score=189.88 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=158.7
Q ss_pred CCCeEEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCC----CcCCceEEEEeCCCCCCccccCCCEE
Q 041395 30 VNRWLNAHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGG----QACGACYQLMCDYRADPKWCLRHATV 105 (257)
Q Consensus 30 ~~~~~~g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g----~~CG~C~ev~c~~~~~~~~C~~g~sv 105 (257)
=++-++|.|||-|.. ..+||--.. +.+-+..+.|+|++.-+-| +.-|+.++|.+ |+ | ++
T Consensus 27 wd~~f~G~ATyTgsG----YsGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----PK----G-~T 89 (232)
T COG4305 27 WDDLFEGYATYTGSG----YSGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----PK----G-KT 89 (232)
T ss_pred cccccceeEEEeccc----ccCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC-----CC----C-ce
Confidence 344567999988653 467877443 3445677999999887754 78999999997 54 6 78
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEeeecCceEEEEc--CccceeEEEEEeeCC
Q 041395 106 TLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRRGGVHFTLK--GQSNFNMVMFSNVGG 183 (257)
Q Consensus 106 ~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~~~g~i~~~v~--ss~~w~~v~v~n~~g 183 (257)
+|.|||+.|+. ..+.+|||+.||.+|++. ..|+|+|+||.|+-+..||+.+++| |+.||-++||+|+.
T Consensus 90 TVYVTDlYPeg--------asGaLDLSpNAFakIGnm-~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~- 159 (232)
T COG4305 90 TVYVTDLYPEG--------ASGALDLSPNAFAKIGNM-KQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK- 159 (232)
T ss_pred EEEEecccccc--------cccccccChHHHhhhcch-hcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc-
Confidence 99999999983 247899999999999999 8999999999999999999999997 57899999999998
Q ss_pred CcceeEEEEEecCCCCceEccccccceEEeCCCCCCcceEEEEEEeCCcEEEEc-eeeCCCCCC-CeEEecccCCC
Q 041395 184 SGDLKGAWVRGSRTKTWIAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFF-NVVPSSWSF-GQTFSSRNQFY 257 (257)
Q Consensus 184 ~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~vv~~-~vip~~w~~-G~~y~s~vqf~ 257 (257)
.||.++|+.+.+ .|..|.+.+||+|.-.. |..+||.+|+||+.|+.++.. -.+|..-.. --+-.++|||+
T Consensus 160 -yPV~KlE~~qdg--~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 160 -YPVMKLEYEQDG--KWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred -CceEEEEEecCC--eEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccCCceeecceeecC
Confidence 699999999876 79999999999998655 333599999999999999876 344422111 13456788884
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=3e-26 Score=173.81 Aligned_cols=82 Identities=60% Similarity=1.280 Sum_probs=74.6
Q ss_pred EEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEEEEecCCCCC-----CCCCCCCCCCCceeeChHHHHhhhcC
Q 041395 68 TAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPN-----NHGGWCDPPRQHFDMSMPAFFRIARQ 142 (257)
Q Consensus 68 ~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~-----~~~~~C~~~~~~~DLs~~AF~~ia~~ 142 (257)
+||+|++||++|++||+||||+|.+ ++++|.++++|+|+|||+||++ ++++||++++.|||||.+||.+||++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~--~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~ 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD--SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC--CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence 4899999999999999999999964 3778988779999999999985 45789998889999999999999999
Q ss_pred CCCCeEEEEE
Q 041395 143 GNEGIVPILY 152 (257)
Q Consensus 143 ~~~G~~~i~~ 152 (257)
..|+|+|+|
T Consensus 79 -~~Gvi~v~y 87 (87)
T smart00837 79 -KAGIVPVKY 87 (87)
T ss_pred -cCCEEeeEC
Confidence 899999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=3.8e-25 Score=175.98 Aligned_cols=89 Identities=17% Similarity=0.330 Sum_probs=80.6
Q ss_pred ceEEEEc--CccceeEEEEEeeCCCcceeEEEEEecCCCCce-EccccccceEEeCC--CCCCcceEEEEEEeCCcEEEE
Q 041395 162 GVHFTLK--GQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWI-AMQRNWGANWSSSV--DLRIQRLSFKLTLVDGRTQLF 236 (257)
Q Consensus 162 ~i~~~v~--ss~~w~~v~v~n~~g~g~I~~Vev~~~~~~~W~-~m~r~~gn~W~~~~--~l~g~p~~~RvT~~~G~~vv~ 236 (257)
+|+|+|+ +|++||++++ | ++|.+|||+++++.+|+ +|+|+||++|+++. +|+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 8999996 5688887765 3 35999999999877999 99999999999864 7887 9999999999999999
Q ss_pred ceeeCCCCCCCeEEecccCC
Q 041395 237 FNVVPSSWSFGQTFSSRNQF 256 (257)
Q Consensus 237 ~~vip~~w~~G~~y~s~vqf 256 (257)
+||||++|++|++|++++||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999998
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=1.8e-23 Score=157.08 Aligned_cols=78 Identities=41% Similarity=0.707 Sum_probs=65.8
Q ss_pred eEEEEc--CccceeEEEEEeeCCCcceeEEEEEecCCCCceEccccccceEEeC-CCCCCcceEEEEEEeC-CcEEEEce
Q 041395 163 VHFTLK--GQSNFNMVMFSNVGGSGDLKGAWVRGSRTKTWIAMQRNWGANWSSS-VDLRIQRLSFKLTLVD-GRTQLFFN 238 (257)
Q Consensus 163 i~~~v~--ss~~w~~v~v~n~~g~g~I~~Vev~~~~~~~W~~m~r~~gn~W~~~-~~l~g~p~~~RvT~~~-G~~vv~~~ 238 (257)
|+|+|+ |++|||+|+|.|++|+++|++|||+++++.+|++|+|+||++|+++ .+++ +||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence 688996 4699999999999999999999999999888999999999999998 5666 59999999977 99999999
Q ss_pred eeC
Q 041395 239 VVP 241 (257)
Q Consensus 239 vip 241 (257)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.76 E-value=7.1e-19 Score=130.47 Aligned_cols=76 Identities=37% Similarity=0.711 Sum_probs=60.8
Q ss_pred EEEecccccCCCCcCCceEEEEeCCCCCC-ccccCC-CEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCCCC
Q 041395 68 TAAVSGVLFRGGQACGACYQLMCDYRADP-KWCLRH-ATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNE 145 (257)
Q Consensus 68 ~AA~s~~l~~~g~~CG~C~ev~c~~~~~~-~~C~~g-~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~ 145 (257)
+||++..+|++|.+||+||+++|.....+ ..|..+ ++|+|+|+|+||+ |. ..|||||+.||.+|+.+ +.
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~------~~--~~~lDLS~~aF~~la~~-~~ 71 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG------CP--PNHLDLSPAAFKALADP-DA 71 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT------SS--SSEEEEEHHHHHHTBST-TC
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC------Cc--CCEEEeCHHHHHHhCCC-Cc
Confidence 68999999999999999999999443211 127653 7999999999998 86 48999999999999999 99
Q ss_pred CeEEEEE
Q 041395 146 GIVPILY 152 (257)
Q Consensus 146 G~~~i~~ 152 (257)
|+++|+|
T Consensus 72 G~i~V~w 78 (78)
T PF03330_consen 72 GVIPVEW 78 (78)
T ss_dssp SSEEEEE
T ss_pred eEEEEEC
Confidence 9999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.95 E-value=8.3e-10 Score=86.65 Aligned_cols=62 Identities=26% Similarity=0.529 Sum_probs=44.7
Q ss_pred CCCCcCCceEEEEeCCCCCCccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCC---CCCeEEEEEE
Q 041395 77 RGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQG---NEGIVPILYK 153 (257)
Q Consensus 77 ~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~---~~G~~~i~~r 153 (257)
..-..||+|++||-+. .|++++|+|+|+|+. ++|||.+..|.+|-..+ ..|.+.|+|+
T Consensus 55 ~gq~~CGkClrVTNt~--------tga~~~~RIVDqCsn-----------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~ 115 (119)
T PF00967_consen 55 MGQDSCGKCLRVTNTA--------TGAQVTVRIVDQCSN-----------GGLDLDPTVFNQIDTDGQGYAQGHLIVDYE 115 (119)
T ss_dssp -SGGGTT-EEEEE-TT--------T--EEEEEEEEE-SS-----------SSEES-SSSHHHH-SSSHHHHHTEEEEEEE
T ss_pred cCcccccceEEEEecC--------CCcEEEEEEEEcCCC-----------CCcccChhHHhhhccCCcccccceEEEEEE
Confidence 3457899999999754 378999999999996 48999999999996542 5689999999
Q ss_pred EEEe
Q 041395 154 RVAC 157 (257)
Q Consensus 154 ~V~C 157 (257)
+|+|
T Consensus 116 fV~C 119 (119)
T PF00967_consen 116 FVDC 119 (119)
T ss_dssp EE--
T ss_pred EEcC
Confidence 9998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.16 E-value=1.8e-05 Score=63.35 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=47.3
Q ss_pred eEEEeccc-ccCCCCcCCceEEEEeCCCCCCccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcC--C
Q 041395 67 NTAAVSGV-LFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQ--G 143 (257)
Q Consensus 67 ~~AA~s~~-l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~--~ 143 (257)
.+.+.... -| |...||.|+|++- +|+++.|..+|.-+ ..|+|+.+||+.|.+- .
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty----------~g~si~vlaID~a~------------~gfnis~~A~n~LT~g~a~ 100 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTY----------NGRSIYVLAIDHAG------------GGFNISLDAMNDLTNGQAV 100 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEE----------TTEEEEEEEEEE-S------------SSEEE-HHHHHHHHTS-CC
T ss_pred eeccccccccC-CCCCCCCeEEEEE----------CCeEEEEEEEecCC------------CcccchHHHHHHhcCCccc
Confidence 36666553 46 5579999999997 26799999999744 3699999999999762 1
Q ss_pred CCCeEEEEEEEEE
Q 041395 144 NEGIVPILYKRVA 156 (257)
Q Consensus 144 ~~G~~~i~~r~V~ 156 (257)
..|+|+++|++|+
T Consensus 101 ~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 101 ELGRVDATYTQVD 113 (119)
T ss_dssp CC-EEE-EEEEE-
T ss_pred ceeEEEEEEEEcC
Confidence 6799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.83 E-value=0.00021 Score=62.21 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=67.7
Q ss_pred EEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEEEEecCCCC
Q 041395 36 AHATYYGADQSPSTLGGACGYDNTIHAGFGVNTAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPP 115 (257)
Q Consensus 36 g~aT~Yg~~~~~~~~~GACGyg~~~~~~~~~~~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~ 115 (257)
|.|+|||..... ..-|+|=. ++ ...++||=.+ .-.|...+|+... +|++|+|+|.|++|-
T Consensus 1 G~ASwYg~~f~G--~~TAnGe~-y~---~~~~tAAHkt------LPlgT~V~VtNl~--------ngrsviVrVnDRGPf 60 (208)
T TIGR00413 1 GLASWYGPKFHG--RKTANGEV-YN---MKALTAAHKT------LPFNTYVKVTNLH--------NNRSVIVRINDRGPF 60 (208)
T ss_pred CEEeEeCCCCCC--CcCCCCee-cC---CCcccccccc------CCCCCEEEEEECC--------CCCEEEEEEeCCCCC
Confidence 679999863211 12233221 11 1124555433 3788899999754 478999999999996
Q ss_pred CCCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEeeec
Q 041395 116 NNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACKRR 160 (257)
Q Consensus 116 ~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~~~ 160 (257)
. +..-+|||..|+.+|+-. ..|+.+|+.+.+.....
T Consensus 61 ~--------~gRiIDLS~aAA~~Lg~~-~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 61 S--------DDRIIDLSHAAAREIGLI-SRGVGQVRIEVLHVAKN 96 (208)
T ss_pred C--------CCCEEECCHHHHHHcCCC-cCceEEEEEEEEecCCC
Confidence 2 235799999999999988 89999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00022 Score=63.07 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=49.8
Q ss_pred CceEEEEeCCCCCCccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEEEee
Q 041395 83 GACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRVACK 158 (257)
Q Consensus 83 G~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V~C~ 158 (257)
|.-.+|+-.+ +|++|+|+|.|++|- .. .-.+|||..|+.+|+-. ..|+.+|+.+++.+.
T Consensus 120 ~t~v~VtNl~--------NgrsvvVRINDRGPf-------~~-gRiIDlS~aAA~~l~~~-~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLD--------NGRSVVVRINDRGPF-------VS-GRIIDLSKAAADKLGMI-RSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEcc--------CCcEEEEEEeCCCCC-------CC-CcEeEcCHHHHHHhCCc-cCceEEEEEEEeccc
Confidence 4467788755 488999999999994 33 35899999999999998 899999999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=96.90 E-value=0.012 Score=55.38 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=45.8
Q ss_pred cCCceEEEEeCCCCCCccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHHHHhhhcCCCCCeEEEEEEEE
Q 041395 81 ACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPAFFRIARQGNEGIVPILYKRV 155 (257)
Q Consensus 81 ~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~~G~~~i~~r~V 155 (257)
--|...+|+... +|++|+|+|.|++|-. +..-+|||..|+.+|.-. ..+.+.|+.-.|
T Consensus 114 Plps~vrVtNl~--------ngrsvvVrVnDRGP~~--------~gRiiDLS~aAA~~Lg~~-~~~~V~ve~i~v 171 (361)
T PRK10672 114 PIPSYVRVTNLA--------NGRMIVVRINDRGPYG--------PGRVIDLSRAAADRLNTS-NNTKVRIDPIIV 171 (361)
T ss_pred CCCCEEEEEECC--------CCcEEEEEEeCCCCCC--------CCCeeEcCHHHHHHhCCC-CCceEEEEEEee
Confidence 567788998755 4899999999999962 235799999999999876 556666666655
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=92.63 E-value=0.15 Score=44.41 Aligned_cols=55 Identities=25% Similarity=0.325 Sum_probs=32.3
Q ss_pred EEEecccccCCCCcCCceEEEEeCCCCCCccccCCCEEEEEEecCCCCCCCCCCCCCCCCceeeChHH
Q 041395 68 TAAVSGVLFRGGQACGACYQLMCDYRADPKWCLRHATVTLTATNFCPPNNHGGWCDPPRQHFDMSMPA 135 (257)
Q Consensus 68 ~AA~s~~l~~~g~~CG~C~ev~c~~~~~~~~C~~g~sv~V~VtD~Cp~~~~~~~C~~~~~~~DLs~~A 135 (257)
+||++-.=......|++|||++=++. +- .||+.+|++||.=-+ = ..+||||..+-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g--~l---~GKkmiVQ~tNtG~d------l--g~n~FDl~iPG 124 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSG--PL---KGKKMIVQVTNTGGD------L--GSNQFDLAIPG 124 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SS--TT---TT-EEEEEEEEE-TT------T--TTTEEEEE-TT
T ss_pred eeeeeecCCCCCCcccceEEEEEcCC--Cc---CCCEeEEEecccCCC------C--CCCeEEEEeCC
Confidence 45555221123378999999998763 22 489999999986433 1 25899998543
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=82.83 E-value=1.7 Score=35.21 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCc-ceeEEEEEecCCCCceEccccccc-------------eEEeCC---CCCCc-ceEEEEEEeCCcE
Q 041395 182 GGSG-DLKGAWVRGSRTKTWIAMQRNWGA-------------NWSSSV---DLRIQ-RLSFKLTLVDGRT 233 (257)
Q Consensus 182 ~g~g-~I~~Vev~~~~~~~W~~m~r~~gn-------------~W~~~~---~l~g~-p~~~RvT~~~G~~ 233 (257)
.|.+ +|++|||+.+++.+|++.+...-. .|++.- .+.|. -+.+|-||.+|.+
T Consensus 37 ~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 37 SGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp -STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred eCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 3445 899999999998899877643211 466542 11231 5666777777753
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=76.62 E-value=5.3 Score=37.11 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCcceeEEEEEecCCCCceEccccccc-------eEEeCCCC-CC-cceEEEEEEeCCcEEE
Q 041395 183 GSGDLKGAWVRGSRTKTWIAMQRNWGA-------NWSSSVDL-RI-QRLSFKLTLVDGRTQL 235 (257)
Q Consensus 183 g~g~I~~Vev~~~~~~~W~~m~r~~gn-------~W~~~~~l-~g-~p~~~RvT~~~G~~vv 235 (257)
|...|++|||+.+++.+|++..-.... .|++.-.+ .| --+.+|.+|.+|++--
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP 295 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNVQP 295 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCC
Confidence 335799999999998899987653211 55554222 22 2577777888875433
No 18
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=71.28 E-value=11 Score=28.89 Aligned_cols=48 Identities=8% Similarity=0.232 Sum_probs=33.9
Q ss_pred eeEEEEEecCCCCce----EccccccceEEeCCC---------CCCcceEEEEEEeCCcEEE
Q 041395 187 LKGAWVRGSRTKTWI----AMQRNWGANWSSSVD---------LRIQRLSFKLTLVDGRTQL 235 (257)
Q Consensus 187 I~~Vev~~~~~~~W~----~m~r~~gn~W~~~~~---------l~g~p~~~RvT~~~G~~vv 235 (257)
-++|+|.++-. .|. +|.|...-+|++.-+ ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn-~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFN-NWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCC-CCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45677776543 664 488877778987522 2467999999998888764
No 19
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=65.93 E-value=11 Score=35.22 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=32.3
Q ss_pred CCCcceeEEEEEecCCCCceEcccccc---c---eEEeC-CCCCC-cceEEEEEEeCCcE
Q 041395 182 GGSGDLKGAWVRGSRTKTWIAMQRNWG---A---NWSSS-VDLRI-QRLSFKLTLVDGRT 233 (257)
Q Consensus 182 ~g~g~I~~Vev~~~~~~~W~~m~r~~g---n---~W~~~-~~l~g-~p~~~RvT~~~G~~ 233 (257)
.|.+.|+.|||+.+++.+|+..+-..- . .|++. .+..+ --+..|-||..|++
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 344579999999999889997765311 1 23332 12222 25667778887754
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=60.92 E-value=23 Score=34.08 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.1
Q ss_pred CCCcceeEEEEEecCCCCceEccc
Q 041395 182 GGSGDLKGAWVRGSRTKTWIAMQR 205 (257)
Q Consensus 182 ~g~g~I~~Vev~~~~~~~W~~m~r 205 (257)
+|...|++|||+.+++.+|+....
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeee
Confidence 443469999999999889997754
No 21
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=57.27 E-value=20 Score=34.02 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=32.9
Q ss_pred CCcceeEEEEEecCCCCceEcccc--ccc----eEEeC-CCC-CC-cceEEEEEEeCCcE
Q 041395 183 GSGDLKGAWVRGSRTKTWIAMQRN--WGA----NWSSS-VDL-RI-QRLSFKLTLVDGRT 233 (257)
Q Consensus 183 g~g~I~~Vev~~~~~~~W~~m~r~--~gn----~W~~~-~~l-~g-~p~~~RvT~~~G~~ 233 (257)
|.+.|++|||+.+++.+|++..-. .+. .|++. .+. .| --+.+|-||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 446799999999998899877532 222 35554 222 23 25666778888754
No 22
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=54.54 E-value=34 Score=32.49 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCCcceeEEEEEecCCCCceEccccc--c-------c---eEEeCCCC-CCc--ceEEEEEEeCCcEE
Q 041395 182 GGSGDLKGAWVRGSRTKTWIAMQRNW--G-------A---NWSSSVDL-RIQ--RLSFKLTLVDGRTQ 234 (257)
Q Consensus 182 ~g~g~I~~Vev~~~~~~~W~~m~r~~--g-------n---~W~~~~~l-~g~--p~~~RvT~~~G~~v 234 (257)
+|...|++|||+.+++.+|+...-.. + - .|++.-.+ .+. -+.+|.||..|++-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~Q 340 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNVQ 340 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCcC
Confidence 44457999999999988999776432 1 2 34443222 221 46667777777543
No 23
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=47.67 E-value=44 Score=32.02 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=30.6
Q ss_pred cceeEEEEEecCCCCceEcccc--c-----c-----ceEEeCCCC---CC-cceEEEEEEeCCcE
Q 041395 185 GDLKGAWVRGSRTKTWIAMQRN--W-----G-----ANWSSSVDL---RI-QRLSFKLTLVDGRT 233 (257)
Q Consensus 185 g~I~~Vev~~~~~~~W~~m~r~--~-----g-----n~W~~~~~l---~g-~p~~~RvT~~~G~~ 233 (257)
..|++|||+.+++.+|+..... . + -.|++.-.+ .| --+.+|-||..|++
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~ 364 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNT 364 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCc
Confidence 3699999999998899977542 1 1 134444211 23 14666777777753
No 24
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=41.75 E-value=1.2e+02 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.5
Q ss_pred CccceeEEEEEeeCCCcceeEEEEEec
Q 041395 169 GQSNFNMVMFSNVGGSGDLKGAWVRGS 195 (257)
Q Consensus 169 ss~~w~~v~v~n~~g~g~I~~Vev~~~ 195 (257)
+.+||.-+.|+|.+| ...++|+|++.
T Consensus 48 ~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 48 TGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 357999999999887 47899999864
No 25
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=39.59 E-value=16 Score=23.41 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=9.4
Q ss_pred eeeCCCCCCCe
Q 041395 238 NVVPSSWSFGQ 248 (257)
Q Consensus 238 ~vip~~w~~G~ 248 (257)
-+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 47899999986
No 26
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=38.11 E-value=1.2e+02 Score=22.45 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred eEccccc-cceEEeC--CCCCCcceEEEEEEeCCcEEEEceeeCCCCCCCeEEe
Q 041395 201 IAMQRNW-GANWSSS--VDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFS 251 (257)
Q Consensus 201 ~~m~r~~-gn~W~~~--~~l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G~~y~ 251 (257)
.+|.|.. ...|... ....+..+.+|++..+|.+... .+=|..+.+.+
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~----~DPYa~~~~~~ 98 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLK----ADPYAFYSELR 98 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEe----eCCCceeeEeC
Confidence 4787765 6678753 2222346999998755555432 22244445554
No 27
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=37.66 E-value=1.3e+02 Score=22.44 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=23.1
Q ss_pred eEccccccceEEeC--CCCCCcceEEEEEEeCCcE
Q 041395 201 IAMQRNWGANWSSS--VDLRIQRLSFKLTLVDGRT 233 (257)
Q Consensus 201 ~~m~r~~gn~W~~~--~~l~g~p~~~RvT~~~G~~ 233 (257)
.+|+|..+.+|.+. +.+.+.-+.+||....++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 47888778899864 3455567999998764444
No 28
>PLN02252 nitrate reductase [NADPH]
Probab=35.52 E-value=96 Score=33.10 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.6
Q ss_pred EeeCCCcceeEEEEEecCCCCceEcccc
Q 041395 179 SNVGGSGDLKGAWVRGSRTKTWIAMQRN 206 (257)
Q Consensus 179 ~n~~g~g~I~~Vev~~~~~~~W~~m~r~ 206 (257)
.+.+|...|+.|||..+++.+|+..+..
T Consensus 366 A~sggg~~I~rVEVS~DgG~tW~~a~l~ 393 (888)
T PLN02252 366 AYSGGGRKVTRVEVSLDGGETWRLCDLD 393 (888)
T ss_pred EECCCCCceEEEEEEcCCCCcceeCccC
Confidence 3445445799999999998899987664
No 29
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=34.56 E-value=1e+02 Score=21.91 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=31.2
Q ss_pred eeEEEEEecCCCCc----eEcc-ccccceEEeCC--CCC-C-cceEEEEEEeCCcEEEE
Q 041395 187 LKGAWVRGSRTKTW----IAMQ-RNWGANWSSSV--DLR-I-QRLSFKLTLVDGRTQLF 236 (257)
Q Consensus 187 I~~Vev~~~~~~~W----~~m~-r~~gn~W~~~~--~l~-g-~p~~~RvT~~~G~~vv~ 236 (257)
.++|+|.......| .+|+ +..+.+|++.- .+. + .-+.+||+..+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEEE
Confidence 45566655443223 5777 56778898752 344 3 48999999988755443
No 30
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=34.01 E-value=1e+02 Score=25.36 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred CeEEEEEEEEEeeecCceEEEEc----CccceeEEEEEeeCCCcceeEEE
Q 041395 146 GIVPILYKRVACKRRGGVHFTLK----GQSNFNMVMFSNVGGSGDLKGAW 191 (257)
Q Consensus 146 G~~~i~~r~V~C~~~g~i~~~v~----ss~~w~~v~v~n~~g~g~I~~Ve 191 (257)
|-+||+-|.-| -.++.++.+- -+++|+.|++ +.+|+ ++.-|.
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG~-~~a~v~ 103 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGGE-PFAVVQ 103 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCCc-EEEEEE
Confidence 45555544443 1235666663 2899999988 55653 454333
No 31
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=31.17 E-value=1.9e+02 Score=20.86 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=31.8
Q ss_pred eeEEEEEecCCCCce---EccccccceEEeCCCCCCcceEEEEEEeCCcEEEEc
Q 041395 187 LKGAWVRGSRTKTWI---AMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQLFF 237 (257)
Q Consensus 187 I~~Vev~~~~~~~W~---~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~vv~~ 237 (257)
.++|+|.++=. .|. +|.|..+. |...-.|..+.+.+|+.. +|+++...
T Consensus 12 a~~V~v~G~F~-~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 12 GKEVYVTGSFD-NWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred CcEEEEEEEcC-CCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 57889988643 675 58887655 776544432366777763 67887765
No 32
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.41 E-value=1.1e+02 Score=22.07 Aligned_cols=45 Identities=33% Similarity=0.643 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCc--eEccccccceEEeCCCCCCcceEEEEEEeCCcEE
Q 041395 188 KGAWVRGSRTKTW--IAMQRNWGANWSSSVDLRIQRLSFKLTLVDGRTQ 234 (257)
Q Consensus 188 ~~Vev~~~~~~~W--~~m~r~~gn~W~~~~~l~g~p~~~RvT~~~G~~v 234 (257)
++|+|.++=. .| .+|+|.....|++.-.+..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn-~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFN-NWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECC-CCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 7788887633 57 468887656788764443224555555 356665
No 33
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=82 Score=25.47 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=53.5
Q ss_pred CCC-CCCceeeChHHHHhhhcCCCCCeEEEEEE-------EEEeeecCceEEEEc-CccceeEEEEEeeCCCcceeEEEE
Q 041395 122 CDP-PRQHFDMSMPAFFRIARQGNEGIVPILYK-------RVACKRRGGVHFTLK-GQSNFNMVMFSNVGGSGDLKGAWV 192 (257)
Q Consensus 122 C~~-~~~~~DLs~~AF~~ia~~~~~G~~~i~~r-------~V~C~~~g~i~~~v~-ss~~w~~v~v~n~~g~g~I~~Vev 192 (257)
|.- ..-||-+....|..|-.. ....+|+ -+.|.+-|--.|... |++|=.++.+.=..+ +.+++|++
T Consensus 37 cs~k~~~hfivpas~f~ll~g~----efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~ 111 (134)
T KOG4192|consen 37 CSKKQNRHFIVPASRFVLLVGA----EFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVW 111 (134)
T ss_pred hhhccceEEEEeccceEEEeCc----ceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEE
Confidence 542 356888888777776431 1233333 466766554556664 899999988876655 68999999
Q ss_pred EecCCCCceEccc
Q 041395 193 RGSRTKTWIAMQR 205 (257)
Q Consensus 193 ~~~~~~~W~~m~r 205 (257)
+.-++++|..+..
T Consensus 112 ~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 112 EEFNGQDWEATME 124 (134)
T ss_pred EEecCcchhHhhh
Confidence 9988878876543
No 34
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=80 Score=25.88 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.9
Q ss_pred eEEeCCCCCCcceEEEEEEeCCcEEEEceeeCCCCCCCeEEecccCCC
Q 041395 210 NWSSSVDLRIQRLSFKLTLVDGRTQLFFNVVPSSWSFGQTFSSRNQFY 257 (257)
Q Consensus 210 ~W~~~~~l~g~p~~~RvT~~~G~~vv~~~vip~~w~~G~~y~s~vqf~ 257 (257)
.|+.+ ++.| |..|++++--+|++.-.-.|.-.-+|++|.-.+-|+
T Consensus 26 e~q~~-pP~G--~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~ 70 (161)
T KOG0427|consen 26 EWQNN-PPTG--FKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFP 70 (161)
T ss_pred HHhcC-CCCc--ceeecccchheeEEEEecCCceeecCcEEEEEEecC
Confidence 35543 3443 788899988999998877888778888888777763
No 35
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.79 E-value=1.6e+02 Score=22.55 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=10.5
Q ss_pred ceEEEEEEeCCcEEEEc
Q 041395 221 RLSFKLTLVDGRTQLFF 237 (257)
Q Consensus 221 p~~~RvT~~~G~~vv~~ 237 (257)
+++++.+|++|+.....
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 67777777777665543
No 36
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=22.73 E-value=93 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=17.4
Q ss_pred cceEEEEEEeCCc-EEEEceeeCCCCCCCeE
Q 041395 220 QRLSFKLTLVDGR-TQLFFNVVPSSWSFGQT 249 (257)
Q Consensus 220 ~p~~~RvT~~~G~-~vv~~~vip~~w~~G~~ 249 (257)
..++|.|||.+.+ .|++..+.|++++.|+.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3789999988654 45556899999988764
No 37
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.23 E-value=1e+02 Score=25.93 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceEEEEEEeCCc-EEEEceeeCCCCCCCe
Q 041395 221 RLSFKLTLVDGR-TQLFFNVVPSSWSFGQ 248 (257)
Q Consensus 221 p~~~RvT~~~G~-~vv~~~vip~~w~~G~ 248 (257)
.++|+|||...+ .|.+..++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 578888876554 4445679999888875
Done!