BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041396
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 6 QYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNT 38
+YVPYV D KRA+DEY IFM K F HNT
Sbjct: 405 KYVPYVADSKRAMDEYICSIFMGGKQTFVVHNT 437
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 28.9 bits (63), Expect = 0.74, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 6 QYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHN 37
+Y+ VGD K A+DEY SE+ + HN
Sbjct: 403 KYMKPVGDSKVAMDEYYSELMLGGHNRISIHN 434
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 30 KTPFCGHNTLFWLLPSSYSAAGSCSKLNERANSTLSDLWLQFSP 73
K+ FC N FWL + S KL+ +A +D + +P
Sbjct: 45 KSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAP 88
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 30 KTPFCGHNTLFWLLPSSYSAAGSCSKLNERANSTLSDLWLQFSP 73
K+ FC N FWL + S KL+ +A +D + +P
Sbjct: 36 KSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAP 79
>pdb|3L4C|A Chain A, Structural Basis Of Membrane-Targeting By Dock180
pdb|3L4C|B Chain B, Structural Basis Of Membrane-Targeting By Dock180
Length = 220
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 RFQYVPYVGDGKRAIDEYTSEIFMEAKTP 32
R ++V + G G AI EY S I+ + K P
Sbjct: 62 RLEHVIFPGAGDEAISEYKSVIYYQVKQP 90
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 6 QYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHN 37
+Y VGD K A DEY SE+ + HN
Sbjct: 403 KYXKPVGDSKVAXDEYYSELXLGGHNRISIHN 434
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,456,192
Number of Sequences: 62578
Number of extensions: 79315
Number of successful extensions: 123
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)