Query 041396
Match_columns 82
No_of_seqs 76 out of 78
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0693 Myo-inositol-1-phospha 100.0 4.9E-32 1.1E-36 220.9 4.2 76 2-78 383-472 (512)
2 PLN02438 inositol-3-phosphate 100.0 1.5E-30 3.3E-35 213.7 3.7 76 2-77 383-471 (510)
3 TIGR03450 mycothiol_INO1 inosi 99.9 2E-22 4.4E-27 160.2 4.1 76 2-79 254-337 (351)
4 PF01658 Inos-1-P_synth: Myo-i 99.7 1.5E-17 3.2E-22 114.1 0.7 41 2-42 72-112 (112)
5 COG1260 INO1 Myo-inositol-1-ph 99.3 2.6E-12 5.6E-17 103.2 3.5 77 4-80 267-346 (362)
6 PF07994 NAD_binding_5: Myo-in 99.0 8.5E-11 1.8E-15 90.9 1.6 35 43-77 236-272 (295)
7 PF15127 DUF4565: Protein of u 44.7 6.8 0.00015 26.9 -0.1 25 45-69 50-74 (91)
8 PF09292 Neil1-DNA_bind: Endon 26.3 19 0.00041 21.5 -0.3 11 65-75 5-15 (39)
9 PF04114 Gaa1: Gaa1-like, GPI 25.9 50 0.0011 27.5 2.0 54 9-75 12-81 (504)
10 PF07488 Glyco_hydro_67M: Glyc 25.6 31 0.00068 28.3 0.7 49 29-77 70-118 (328)
11 cd01271 Fe65_C Fe65 C-terminal 21.8 2.4E+02 0.0052 20.1 4.6 55 2-59 65-121 (124)
No 1
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=99.97 E-value=4.9e-32 Score=220.94 Aligned_cols=76 Identities=34% Similarity=0.467 Sum_probs=66.5
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHH------HHHHHHHhcccccccc-------
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGS------CSKLNERANSTLSDLW------- 68 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl------~~~l~~r~~~~g~~~w------- 68 (82)
+|||||||||||||||||||+|||||||+|||++||||||||||+||++|| |+|+++| .++...+|
T Consensus 383 ~vVIKYvpyVgDSKrAmDEYtsei~mGG~ntiviHNtCEDSLLA~PlilDL~lltEl~tRvs~k-~~de~k~~~FhpVlt 461 (512)
T KOG0693|consen 383 CVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVIHNTCEDSLLAAPLILDLVLLTELSTRVSFK-AEDEGKFHSFHPVLT 461 (512)
T ss_pred EEEEEecccccchhhHHHHHHHHHhhCCcceEEEeccchHhhhhhhHHHHHHHHHHHhhheEee-ecCCCCccccccHHH
Confidence 799999999999999999999999999999999999999999999977665 5667777 55555665
Q ss_pred -ccccccCCcc
Q 041396 69 -LQFSPSSPRL 78 (82)
Q Consensus 69 -l~f~~ksp~~ 78 (82)
|||.+|+|-.
T Consensus 462 lLSyl~KAPlv 472 (512)
T KOG0693|consen 462 LLSYLLKAPLV 472 (512)
T ss_pred HHHHHhcCCcC
Confidence 7888888853
No 2
>PLN02438 inositol-3-phosphate synthase
Probab=99.96 E-value=1.5e-30 Score=213.73 Aligned_cols=76 Identities=37% Similarity=0.448 Sum_probs=72.6
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhccc-----------ccccc
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANST-----------LSDLW 68 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~-----------g~~~w 68 (82)
+|+|+|+|++||+|+|||||+++||||++|||++||+|+||+|||||++||++. ++.|++.+ +++.|
T Consensus 383 ~v~I~YvP~lGD~K~A~d~~~~~~FlG~~~~i~~~~~ceDS~lAAPlvlDLvrla~la~R~~~~~~~~~~~~~~~~v~~~ 462 (510)
T PLN02438 383 VVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATL 462 (510)
T ss_pred EeeccccCcCCCcEEEEEEEEeeecCCCceEEEEEEEEecchhhHHHHHHHHHHHHHHHhhccccccccccccccchhhH
Confidence 589999999999999999999999999999999999999999999999999886 88988766 99999
Q ss_pred ccccccCCc
Q 041396 69 LQFSPSSPR 77 (82)
Q Consensus 69 l~f~~ksp~ 77 (82)
||||||||.
T Consensus 463 lsy~~KaPl 471 (510)
T PLN02438 463 LSYLTKAPL 471 (510)
T ss_pred HHHHccCCC
Confidence 999999996
No 3
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=99.86 E-value=2e-22 Score=160.25 Aligned_cols=76 Identities=11% Similarity=-0.050 Sum_probs=72.4
Q ss_pred EEEE---EeecCCCCccchhhhhhhhh--hcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccc-ccccccccc
Q 041396 2 KLRF---QYVPYVGDGKRAIDEYTSEI--FMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTL-SDLWLQFSP 73 (82)
Q Consensus 2 kVvI---kY~P~vGD~KrA~Deytse~--flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g-~~~wl~f~~ 73 (82)
+|+| +|+|++||+| ||++..|| |+|.+|+|.++++|+||.+|||+++|+++. +|.|+|..| +++|.+|||
T Consensus 254 ~v~IgPsdYvp~lgD~K--~~~i~ieG~~F~G~pm~le~~l~v~DSpnaAglviDlvR~~klA~drG~~G~v~~~ssf~f 331 (351)
T TIGR03450 254 NVHIGPSDHVGWLDDRK--WAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRGIGGPVIPASSYLM 331 (351)
T ss_pred cEEECCcCCCCcCCCcE--EEEEEEEhhhcCCceEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcCCCCcccchhhhhh
Confidence 5899 9999999999 99999999 999999999999999999999999999886 999999999 899999999
Q ss_pred cCCccc
Q 041396 74 SSPRLH 79 (82)
Q Consensus 74 ksp~~~ 79 (82)
|||-.+
T Consensus 332 K~PP~q 337 (351)
T TIGR03450 332 KSPPEQ 337 (351)
T ss_pred cCCccc
Confidence 999543
No 4
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain. 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; PDB: 3CIN_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.66 E-value=1.5e-17 Score=114.08 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=39.0
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhh
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWL 42 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDS 42 (82)
.++|+|+|++||+|+|||+|++++|||++|+|.++++|+||
T Consensus 72 ~~~i~Yvp~lgD~K~a~~~ie~~~f~G~~~~i~~~~~~~DS 112 (112)
T PF01658_consen 72 IGPIDYVPFLGDRKVAWDRIEGEGFLGAPMTIEVNLSVEDS 112 (112)
T ss_dssp EEEEEE-GGGTTEEEEEEEEEEEEGGGEEEEEEEEEEEECH
T ss_pred cccccccCcCCCceEEEEEEEEeeeCCCcEEEEEEEEEeCC
Confidence 58999999999999999999999999999999999999998
No 5
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=99.27 E-value=2.6e-12 Score=103.24 Aligned_cols=77 Identities=13% Similarity=-0.073 Sum_probs=68.9
Q ss_pred EEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccccc-ccccccccCCcccc
Q 041396 4 RFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTLSD-LWLQFSPSSPRLHL 80 (82)
Q Consensus 4 vIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g~~-~wl~f~~ksp~~~~ 80 (82)
.++|+|+.||+|-|++++..++|.|.+|.+.+++.|+||..|||+++|+++. ++.++|-.|.- +-.+||+|+|--+.
T Consensus 267 ps~yv~~L~D~K~a~~~ie~~~F~g~~~~l~~~l~v~DSpnsagliiD~vR~~k~a~drGi~G~v~~~say~mK~P~~~~ 346 (362)
T COG1260 267 PSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPNSAGLIIDLVRLAKLALDRGIGGPVYEVSAYFMKNPPTQY 346 (362)
T ss_pred ccccccccCCceEEEEEEEeeecCCCceEEEEEEEeeccchhhHHHHHHHHHHHHHHhcCCCceeeehhhhhccCCCcCC
Confidence 3689999999999999999999999999999999999999999999999875 99999988864 55677888886553
No 6
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.02 E-value=8.5e-11 Score=90.86 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHH--HHHHhccccccccccccccCCc
Q 041396 43 LPSSYSAAGSCSK--LNERANSTLSDLWLQFSPSSPR 77 (82)
Q Consensus 43 lLAaPl~~dl~~~--l~~r~~~~g~~~wl~f~~ksp~ 77 (82)
+|||||++||++. ++.|+|+.|+++|||||||||-
T Consensus 236 ~lAAplvlDLirl~~la~r~g~~Gv~~~ls~ffK~P~ 272 (295)
T PF07994_consen 236 PLAAPLVLDLIRLAKLALRRGMGGVQEWLSFFFKSPM 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-EEHHHHHHHBSS-T
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCChhHHHHHHhcCCC
Confidence 9999999999997 9999999999999999999994
No 7
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=44.72 E-value=6.8 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHhccccccccc
Q 041396 45 SSYSAAGSCSKLNERANSTLSDLWL 69 (82)
Q Consensus 45 AaPl~~dl~~~l~~r~~~~g~~~wl 69 (82)
|.|+++|.|.||++-.-.+-+|.|-
T Consensus 50 a~~vvlEyA~rLSqEIl~dAlqQWA 74 (91)
T PF15127_consen 50 ASPVVLEYAHRLSQEILSDALQQWA 74 (91)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998888888885
No 8
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=26.26 E-value=19 Score=21.45 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=7.0
Q ss_pred ccccccccccC
Q 041396 65 SDLWLQFSPSS 75 (82)
Q Consensus 65 ~~~wl~f~~ks 75 (82)
.+.||+||.+.
T Consensus 5 F~~WLqCY~v~ 15 (39)
T PF09292_consen 5 FEAWLQCYSVP 15 (39)
T ss_dssp HHHH-SSTT-T
T ss_pred HHHHHHHhccc
Confidence 46799999864
No 9
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=25.89 E-value=50 Score=27.52 Aligned_cols=54 Identities=17% Similarity=-0.003 Sum_probs=37.3
Q ss_pred cCCCCccchhhhhhhhhhcCCCceEEEeehhhhh---hhhHHHHHHHHHHHHHH-------------hcccccccccccc
Q 041396 9 PYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWL---LPSSYSAAGSCSKLNER-------------ANSTLSDLWLQFS 72 (82)
Q Consensus 9 P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDS---lLAaPl~~dl~~~l~~r-------------~~~~g~~~wl~f~ 72 (82)
.++||++||+. ++..+...|+ ..+.++++-+++.+... .+..|.|-||.=|
T Consensus 12 apR~d~tEaiv-------------l~~~~~~~~~~~n~~~v~l~lal~~~~~~~~~wsKDii~l~~~~~~~g~~awl~~Y 78 (504)
T PF04114_consen 12 APRGDGTEAIV-------------LVVPWRDSDGEYNAGGVALALALARYFRRQSYWSKDIIFLFTDDELAGMQAWLEAY 78 (504)
T ss_pred cCCCCCceeEE-------------EEEecCCCCcccchhhHHHHHHHHHHhhhchhhhccEEEEecCCcchHHHHHHHHH
Confidence 68999999974 4444455555 66677777776654322 2567899999888
Q ss_pred ccC
Q 041396 73 PSS 75 (82)
Q Consensus 73 ~ks 75 (82)
+.+
T Consensus 79 h~~ 81 (504)
T PF04114_consen 79 HDS 81 (504)
T ss_pred hCC
Confidence 876
No 10
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=25.57 E-value=31 Score=28.32 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=32.6
Q ss_pred CCceEEEeehhhhhhhhHHHHHHHHHHHHHHhccccccccccccccCCc
Q 041396 29 AKTPFCGHNTLFWLLPSSYSAAGSCSKLNERANSTLSDLWLQFSPSSPR 77 (82)
Q Consensus 29 ~~~ti~~~n~CeDSlLAaPl~~dl~~~l~~r~~~~g~~~wl~f~~ksp~ 77 (82)
|-|-++++|++-+..+-+|--++=..+|+.--..=|++.-||-.|.||.
T Consensus 70 GINgvvlNNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~ 118 (328)
T PF07488_consen 70 GINGVVLNNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPI 118 (328)
T ss_dssp T--EEE-S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHH
T ss_pred CCceEEecccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCc
Confidence 6789999999999877777555555677766667899999999999996
No 11
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.81 E-value=2.4e+02 Score=20.09 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=31.7
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhc--CCCceEEEeehhhhhhhhHHHHHHHHHHHHHH
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFM--EAKTPFCGHNTLFWLLPSSYSAAGSCSKLNER 59 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~fl--G~~~ti~~~n~CeDSlLAaPl~~dl~~~l~~r 59 (82)
+-++.|+++.|+.| |.=++-..| |...=++--+.||++.=+--..++-|=.+.++
T Consensus 65 ecrVr~lSF~GvgK---d~k~fafI~~~~~~~f~ChVF~ce~~A~~ls~av~aAc~lrYQ 121 (124)
T cd01271 65 ECRVRYLSFLGIGK---DVHTCAFIMDTGNQRFECHVFWCEPNAGNVSKAVEAACKLRYQ 121 (124)
T ss_pred eeeEEEeccccCCC---CccEEEEEEecCCCcEEEEEEEecCChHHHHHHHHHHHHHHHh
Confidence 35799999999987 332222222 33444555688888754333444444345544
Done!