Query 041396
Match_columns 82
No_of_seqs 76 out of 78
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qvs_A MIPS, MYO-inositol-1-ph 100.0 1.8E-30 6.2E-35 206.2 5.5 78 2-79 293-372 (392)
2 1p1j_A Inositol-3-phosphate sy 100.0 1.4E-30 4.9E-35 213.5 4.4 77 2-78 399-493 (533)
3 1vko_A Inositol-3-phosphate sy 100.0 2.8E-30 9.5E-35 212.0 3.1 76 2-77 401-487 (537)
4 1vjp_A MYO-inositol-1-phosphat 99.9 9.1E-29 3.1E-33 197.1 1.8 74 3-76 290-366 (394)
5 1gr0_A Inositol-3-phosphate sy 99.9 3.1E-28 1.1E-32 192.2 2.4 78 2-79 268-351 (367)
6 3cin_A MYO-inositol-1-phosphat 99.9 3.1E-27 1.1E-31 186.5 1.7 75 3-77 290-367 (394)
7 4agy_A VP1 protein; picornavir 24.0 77 0.0026 22.5 3.5 28 2-32 73-100 (181)
8 4h3k_B RNA polymerase II subun 16.7 81 0.0028 23.5 2.4 34 37-70 163-197 (214)
9 3p9y_A CG14216, LD40846P; phos 16.6 74 0.0025 23.4 2.2 25 37-61 147-171 (198)
10 4gb3_1 Coat protein 1; capsid 16.1 94 0.0032 23.7 2.7 31 2-35 138-168 (281)
No 1
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding rossmann fold, L-MYO-inositol 1-phosphate syntha isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus} PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Probab=99.96 E-value=1.8e-30 Score=206.25 Aligned_cols=78 Identities=15% Similarity=0.003 Sum_probs=75.2
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhccccccccccccccCCccc
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTLSDLWLQFSPSSPRLH 79 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g~~~wl~f~~ksp~~~ 79 (82)
+|+|+|+|++||+|+|||||++++|||++|+|.+||+|+||+||||+++|+++. ++.|+|..|++.|||||||+|...
T Consensus 293 ~v~I~Yvp~lGD~K~a~d~i~~~~F~G~~~~i~~~~~~~DS~laAplviDlvrl~~la~~~g~~G~l~~ls~~~K~P~~~ 372 (392)
T 3qvs_A 293 ITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDIARFLLFAKKKGVKGVVKEMAFFFKSPMDT 372 (392)
T ss_dssp EEEEEECGGGTTCCEEEEEEEEECGGGCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTTCCEECGGGGGGBSSCTTC
T ss_pred ceEEeecCCCCCceEEEEEEEeeeeCCCcEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHhcCCCCC
Confidence 589999999999999999999999999999999999999999999999999986 999999999999999999999753
No 2
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Probab=99.96 E-value=1.4e-30 Score=213.51 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=73.5
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccc---------------
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTL--------------- 64 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g--------------- 64 (82)
+|+|+|||++||+|+|||||+++||||++|+|++||+|+||+|||||++|+++. ++.|+|.+|
T Consensus 399 ~V~IdYVP~lGD~K~A~d~~~~~~F~G~~~~I~i~~~c~DS~lAApliIDLvrla~la~r~g~~g~~~~~~~~~~~~~~~ 478 (533)
T 1p1j_A 399 CIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFY 478 (533)
T ss_dssp EEEEEECGGGTTEEEEEEEEEEECGGGCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCC
T ss_pred ceEEeecCCCCCcEEEEEEEEEeeecCCcEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcCcCCccccccccccccccc
Confidence 699999999999999999999999999999999999999999999999999986 999999775
Q ss_pred -ccccccccccCCcc
Q 041396 65 -SDLWLQFSPSSPRL 78 (82)
Q Consensus 65 -~~~wl~f~~ksp~~ 78 (82)
++.|||||||||..
T Consensus 479 ~v~s~lSy~fKsP~~ 493 (533)
T 1p1j_A 479 PVLTFLSYWLKAPLT 493 (533)
T ss_dssp SBCGGGGGGBSSCCC
T ss_pred chHHHHHHHccCCCC
Confidence 99999999999963
No 3
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=99.96 E-value=2.8e-30 Score=211.95 Aligned_cols=76 Identities=34% Similarity=0.378 Sum_probs=73.2
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccc---------cccccc
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTL---------SDLWLQ 70 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g---------~~~wl~ 70 (82)
+|+|+|||++||+|+|||||+++||||++|+|.+||+|+||+|||||++|+++. ++.|+|.+| +++|||
T Consensus 401 ~V~IdYVP~lGD~K~A~d~~~~~~FlG~~~~I~i~~~~~DS~lAApliIDLvrlaklA~r~g~~g~~~~~~~~~v~s~lS 480 (537)
T 1vko_A 401 CVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTELASRVSYKVDDEYKPFHSVLSILS 480 (537)
T ss_dssp EECCEECGGGTTEEEEEEEEEEECGGGCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTEEEESSSSEECCCSBCGGGG
T ss_pred ceEEeecCCCCCcEEEEEEEEEeeecCCcEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcccCCccccccccchhhHHH
Confidence 689999999999999999999999999999999999999999999999999986 999998877 999999
Q ss_pred ccccCCc
Q 041396 71 FSPSSPR 77 (82)
Q Consensus 71 f~~ksp~ 77 (82)
||||||.
T Consensus 481 y~fKsP~ 487 (537)
T 1vko_A 481 LLLKAPV 487 (537)
T ss_dssp GGBSSCC
T ss_pred HHccCCC
Confidence 9999995
No 4
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*
Probab=99.94 E-value=9.1e-29 Score=197.07 Aligned_cols=74 Identities=11% Similarity=-0.081 Sum_probs=72.0
Q ss_pred EEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhccccccccc-cccccCC
Q 041396 3 LRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTLSDLWL-QFSPSSP 76 (82)
Q Consensus 3 VvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g~~~wl-~f~~ksp 76 (82)
++|+|+|++||+|+|||+|++++|||++|||.+||+|+||+|||||++|+++. ++.|+|..|++.|+ +||||+|
T Consensus 290 ~~i~Yvp~lGD~K~A~d~ie~~~FlG~~~~i~~~~~~~DS~lAAplviDlvrla~la~~~g~~G~v~~~~sy~~K~P 366 (394)
T 1vjp_A 290 KPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNP 366 (394)
T ss_dssp CCCEECGGGTTEEEEEEEEEEECGGGCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHBSSC
T ss_pred cccccCCcCCCceEEEEEEEeeecCCCcEEEEEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHccCC
Confidence 57899999999999999999999999999999999999999999999999986 99999999999999 7999999
No 5
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=99.94 E-value=3.1e-28 Score=192.16 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=74.8
Q ss_pred EEEE---EeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccccccccc-ccccC
Q 041396 2 KLRF---QYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTLSDLWLQ-FSPSS 75 (82)
Q Consensus 2 kVvI---kY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g~~~wl~-f~~ks 75 (82)
+|+| +|+|++||+|+|||+|++++|||++|+|.+||+|+||+||||+++|+++. ++.|+|..|+++|++ |||||
T Consensus 268 ~v~Igps~Yvp~lgD~K~a~d~i~~~~F~G~~~~i~~~~~~~DS~laAplviDlvrl~~la~~~g~~G~v~~~ssy~~K~ 347 (367)
T 1gr0_A 268 DVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRGIGGPVIPASAYLMKS 347 (367)
T ss_dssp CEECSEEEECGGGTTEEEEEEEEEEEEGGGEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHBSS
T ss_pred cEEECccccCCcCCCceEEEEEEEeeecCCCcEEEEEEEEEecchhhHHHHHHHHHHHHHHHhcCCCcchhHHHHHHccC
Confidence 5899 99999999999999999999999999999999999999999999999986 999999999999995 99999
Q ss_pred Cccc
Q 041396 76 PRLH 79 (82)
Q Consensus 76 p~~~ 79 (82)
|..+
T Consensus 348 P~~~ 351 (367)
T 1gr0_A 348 PPEQ 351 (367)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9754
No 6
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}
Probab=99.93 E-value=3.1e-27 Score=186.51 Aligned_cols=75 Identities=11% Similarity=-0.116 Sum_probs=71.3
Q ss_pred EEEEeecCCCCccchhhhhhhhhhcCCCceEEEeehhhhhhhhHHHHHHHHHH--HHHHhcccc-ccccccccccCCc
Q 041396 3 LRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCGHNTLFWLLPSSYSAAGSCSK--LNERANSTL-SDLWLQFSPSSPR 77 (82)
Q Consensus 3 VvIkY~P~vGD~KrA~Deytse~flG~~~ti~~~n~CeDSlLAaPl~~dl~~~--l~~r~~~~g-~~~wl~f~~ksp~ 77 (82)
++|+|+|++||+|+|||+|++++|||++|+|.++|+|+||+||||+++|+++. ++.++|..| +++|+|||||||-
T Consensus 290 ~~~~Yvp~lgD~K~a~~~ie~~~f~g~~~~i~~~~~~~DS~laAplviDlir~~~la~~~g~~g~v~~~~s~~~K~P~ 367 (394)
T 3cin_A 290 KPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPG 367 (394)
T ss_dssp CCCEECGGGTTEEEEEEEEEEECGGGCEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHBSSCS
T ss_pred cccCCCCcCCCCeEEEEEEEEEEecCcceEEEEEeEEechhhhHHHHHHHHHHHHHHHHhcCCCcchhHHHHHcCCCC
Confidence 56999999999999999999999999999999999999999999999999886 898889888 7899999999993
No 7
>4agy_A VP1 protein; picornavirus, enterovirus, HEV-A; 6.09A {Human coxsackievirus A7} PDB: 4agx_A
Probab=23.98 E-value=77 Score=22.47 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.8
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCce
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTP 32 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~t 32 (82)
.+.|+|+|+=+.....+|.|. |--+.|.
T Consensus 73 ~~QimyvPPGap~P~~~~~~~---Wqs~tNP 100 (181)
T 4agy_A 73 ILQYMYAPPGAPLPTRRDSYE---WQTSTNP 100 (181)
T ss_dssp EEEEEEECSSSCCCSCSSSST---TSCCSSC
T ss_pred EEEEEECCCCCCCCCCccccc---cccCCCC
Confidence 578999999888888888774 4444444
No 8
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=16.68 E-value=81 Score=23.46 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=23.9
Q ss_pred ehhhhhhhhHHHHHHHHHHHHHHhcc-cccccccc
Q 041396 37 NTLFWLLPSSYSAAGSCSKLNERANS-TLSDLWLQ 70 (82)
Q Consensus 37 n~CeDSlLAaPl~~dl~~~l~~r~~~-~g~~~wl~ 70 (82)
.+=|+..++|.+++|||..|..-.+. ..+.++|.
T Consensus 163 Dn~EeA~~Ga~~ileL~~~le~~~D~e~~id~il~ 197 (214)
T 4h3k_B 163 DNHEEATLGAFLICELCQCIQHTEDMENEIDELLQ 197 (214)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45688899999999999998654332 23444444
No 9
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=16.65 E-value=74 Score=23.37 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=20.2
Q ss_pred ehhhhhhhhHHHHHHHHHHHHHHhc
Q 041396 37 NTLFWLLPSSYSAAGSCSKLNERAN 61 (82)
Q Consensus 37 n~CeDSlLAaPl~~dl~~~l~~r~~ 61 (82)
..=|+.+++|.+++|||..|..-.+
T Consensus 147 Dn~EeA~~Ga~~ileL~~~l~~~~d 171 (198)
T 3p9y_A 147 NNAEDALMGAFVITDMINMMAKSTD 171 (198)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHchh
Confidence 3457789999999999999876443
No 10
>4gb3_1 Coat protein 1; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_1* 1jew_1 1oop_A* 1mqt_A*
Probab=16.14 E-value=94 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.2
Q ss_pred EEEEEeecCCCCccchhhhhhhhhhcCCCceEEE
Q 041396 2 KLRFQYVPYVGDGKRAIDEYTSEIFMEAKTPFCG 35 (82)
Q Consensus 2 kVvIkY~P~vGD~KrA~Deytse~flG~~~ti~~ 35 (82)
...|+|+|+=|.-...+|.| -|--+.|.=++
T Consensus 138 ~~Q~MyvPPG~p~P~~~d~~---~Wqs~tNPSVf 168 (281)
T 4gb3_1 138 THQIMYVPPGGPVPDKVDSY---VWQTSTNPSVF 168 (281)
T ss_dssp EEEEEEECTTSCCCSSTTCG---GGGCSSSCEEE
T ss_pred EEEEEecCCCCCCCCCCCCC---cccCCCCccee
Confidence 56899999999999998888 45555554333
Done!