BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041399
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 30 DIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNS--DEMPIQDIPGGPAAFEICAKF 87
D +G+ +F H+ L S S + +T+++N D+ ++ F+ +F
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVK-----ADGFQKLLEF 78
Query: 88 CYGMTVTLNAYNVVAARCAAEYLEMYETVEK 118
Y T+ L+++NV AA+YL++ E V K
Sbjct: 79 IYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAA 80
R + ++ TD+V V +F HK L++ S + N + + D P
Sbjct: 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEINPEG 80
Query: 81 FEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVE 117
F I F Y + L N++A A YL+M V+
Sbjct: 81 FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 27 LATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGG--PAAFEIC 84
L D+ V F H+ L + S+ + L N+ + ++P P +F+
Sbjct: 32 LYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF------NNSRSAVVELPAAVQPQSFQQI 85
Query: 85 AKFCYGMTVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132
FCY +++N + A +L++ E +EKG E FL S
Sbjct: 86 LSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGT-----EFFLKVS 128
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAA 80
R + ++ TD+V V +F HK L++ S + N + + D P
Sbjct: 25 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL-DPEINPEG 83
Query: 81 FEICAKFCYGMTVTLNAYNVVAARCAAEYLEMYETVE 117
F I F Y + L N++A A YL+M V+
Sbjct: 84 FCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|2O98|A Chain A, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|B Chain B, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 242
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 154 SEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQS 207
SEEL V L S+A K I + W + + GN+ H N +R+ +S
Sbjct: 40 SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRS 93
>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
Length = 240
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 154 SEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQS 207
SEEL V L S+A K I + W + + GN+ H N +R+ +S
Sbjct: 40 SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRS 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,482,842
Number of Sequences: 62578
Number of extensions: 645859
Number of successful extensions: 1380
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1377
Number of HSP's gapped (non-prelim): 8
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)