Query 041399
Match_columns 617
No_of_seqs 315 out of 983
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 8.7E-83 1.9E-87 648.7 17.4 243 210-453 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 5.5E-28 1.2E-32 272.1 13.1 230 22-318 30-260 (571)
3 PHA02713 hypothetical protein; 99.9 1.6E-26 3.5E-31 259.7 10.8 226 22-317 19-247 (557)
4 PHA02790 Kelch-like protein; P 99.9 3.2E-24 6.9E-29 237.0 11.1 189 22-280 16-209 (480)
5 PHA03098 kelch-like protein; P 99.9 4.2E-23 9.1E-28 229.4 16.7 221 25-318 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.6 2.5E-16 5.4E-21 138.5 7.2 103 22-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 1.1E-14 2.4E-19 120.7 6.8 83 30-114 1-84 (90)
8 KOG4350 Uncharacterized conser 99.2 7E-11 1.5E-15 125.7 9.9 192 21-283 37-236 (620)
9 KOG2075 Topoisomerase TOP1-int 99.1 1.8E-10 3.9E-15 125.0 10.8 180 22-252 108-294 (521)
10 KOG4591 Uncharacterized conser 98.8 9.8E-09 2.1E-13 101.2 6.6 133 7-158 43-182 (280)
11 KOG4682 Uncharacterized conser 98.5 3E-07 6.6E-12 98.5 7.5 121 24-160 65-188 (488)
12 KOG0783 Uncharacterized conser 98.2 1.9E-06 4.2E-11 98.7 5.9 65 26-92 556-633 (1267)
13 KOG0783 Uncharacterized conser 98.2 1.9E-06 4.2E-11 98.7 5.3 123 29-169 713-845 (1267)
14 PF11822 DUF3342: Domain of un 97.5 7.1E-05 1.5E-09 79.3 3.1 93 31-133 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.7 0.0024 5.2E-08 57.0 4.9 79 31-112 4-104 (104)
16 KOG2716 Polymerase delta-inter 96.2 0.017 3.7E-07 59.1 8.1 94 31-133 7-105 (230)
17 PF02214 BTB_2: BTB/POZ domain 96.1 0.0034 7.4E-08 54.6 2.1 82 31-115 1-89 (94)
18 KOG2838 Uncharacterized conser 94.7 0.023 5.1E-07 59.2 3.0 98 11-112 115-218 (401)
19 PF03931 Skp1_POZ: Skp1 family 93.8 0.11 2.4E-06 42.4 4.8 55 31-89 3-58 (62)
20 KOG3473 RNA polymerase II tran 93.4 0.16 3.4E-06 45.7 5.2 74 36-112 25-112 (112)
21 PF07707 BACK: BTB And C-termi 93.1 0.011 2.4E-07 51.3 -2.4 65 215-297 35-101 (103)
22 KOG1724 SCF ubiquitin ligase, 92.3 0.15 3.3E-06 49.8 4.0 89 36-133 13-127 (162)
23 KOG2838 Uncharacterized conser 82.4 0.95 2.1E-05 47.7 2.6 55 39-96 262-329 (401)
24 KOG3840 Uncharaterized conserv 80.9 5.4 0.00012 42.8 7.5 89 23-113 90-185 (438)
25 KOG2714 SETA binding protein S 76.4 4.8 0.0001 44.9 5.8 81 31-114 13-99 (465)
26 KOG0511 Ankyrin repeat protein 75.5 5.6 0.00012 43.8 5.9 75 38-115 301-380 (516)
27 KOG0511 Ankyrin repeat protein 70.2 0.79 1.7E-05 50.2 -1.9 87 22-113 141-232 (516)
28 smart00875 BACK BTB And C-term 62.5 6.8 0.00015 33.2 2.7 63 215-296 35-99 (101)
29 PF01466 Skp1: Skp1 family, di 59.7 6.1 0.00013 33.7 1.9 33 95-133 11-43 (78)
30 PF14363 AAA_assoc: Domain ass 59.1 5.8 0.00013 35.3 1.7 43 406-449 30-72 (98)
31 KOG1665 AFH1-interacting prote 57.1 35 0.00077 35.4 7.0 88 31-127 11-105 (302)
32 COG5201 SKP1 SCF ubiquitin lig 52.9 45 0.00097 31.9 6.5 93 31-133 4-122 (158)
33 KOG3713 Voltage-gated K+ chann 51.6 53 0.0011 37.4 8.0 100 3-114 13-126 (477)
34 KOG1987 Speckle-type POZ prote 48.5 20 0.00043 37.3 3.9 89 37-133 109-201 (297)
35 KOG2715 Uncharacterized conser 40.6 83 0.0018 31.4 6.5 82 31-114 23-109 (210)
36 PF10929 DUF2811: Protein of u 32.1 33 0.00072 28.2 1.9 20 415-434 8-27 (57)
37 COG3510 CmcI Cephalosporin hyd 31.2 35 0.00075 34.9 2.3 30 408-437 190-219 (237)
38 PF10932 DUF2783: Protein of u 27.1 49 0.0011 27.5 2.1 22 414-438 10-31 (60)
39 PHA00617 ribbon-helix-helix do 25.4 1.1E+02 0.0024 26.8 4.1 37 218-254 44-80 (80)
40 PF11123 DNA_Packaging_2: DNA 23.4 53 0.0011 28.6 1.7 16 415-430 31-46 (82)
41 COG3919 Predicted ATP-grasp en 21.1 70 0.0015 34.7 2.5 44 38-81 160-206 (415)
42 PHA03098 kelch-like protein; P 20.9 4.2E+02 0.0091 30.0 8.9 57 274-331 58-114 (534)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=8.7e-83 Score=648.66 Aligned_cols=243 Identities=53% Similarity=0.839 Sum_probs=216.8
Q ss_pred CCcccccccccCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhhCCCCCCCc--------ccCCchHHHHHHHHHHHHh
Q 041399 210 KDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGM--------IQNGDVTKYRSLVETIMWL 281 (617)
Q Consensus 210 ~dWW~EDL~~L~idl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~L~~~~~~~--------~~~~~~~~~r~LLEtIv~L 281 (617)
+|||||||+.|++|+|+|||.+|+++|+. +++||++|++||++|||+..+.. .......++|.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~-~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMK-PEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence 48999999999999999999999999984 68999999999999999984321 1112357899999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHHHHhcccccCccceeccC-CCCCcccchHHHHHHHHHHHHhchhc
Q 041399 282 LPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLLIRA-PSGDTTVYDVDTVQSLVEEFLAYEQN 360 (617)
Q Consensus 282 LP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkrIg~qLd~AtldDLLiPs-~~~~~t~yDVd~V~ril~~Fl~~~~~ 360 (617)
||.||+++||+|||+|||+|+.++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+++.
T Consensus 80 LP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~ 159 (258)
T PF03000_consen 80 LPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE 159 (258)
T ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999 34447999999999999999998532
Q ss_pred cc------cCcchhhhHhhhcCCCCCccchhhhhcCCCCCChHHHHHHHHhhcCCccccchhHHHHHHHHHhhCCCCCHH
Q 041399 361 AY------SDLSLENEFQKIRSPRMTSDASKVKVAKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPGISKS 434 (617)
Q Consensus 361 ~~------~~~~~~~~~~~~~~~~~l~d~~l~eVA~D~nL~~skF~~LAe~lP~~aR~~hDgLYrAIDiYLK~Hp~ls~~ 434 (617)
.. ...........+.+|++|+|+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~ 239 (258)
T PF03000_consen 160 AGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE 239 (258)
T ss_pred cccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence 11 001111223456678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccCCCCHHHh
Q 041399 435 ERKRICRLMDCRKLSVEAC 453 (617)
Q Consensus 435 Er~~lCr~mdc~KLS~EAc 453 (617)
||++||++|||||||+|||
T Consensus 240 Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 240 ERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHHhhCCcccCCcccC
Confidence 9999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=5.5e-28 Score=272.06 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=197.1
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
+|.++.+|||+|.|++++|++||.||||+|+||++||++. +|.++.+|+|++++ +++++++++|+||+++.|+.+||
T Consensus 30 lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 30 LREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHhH
Confidence 7899999999999999999999999999999999999986 88888999999985 69999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchhhhhHHHHHHHhccCCCCccc
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEW 180 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~~~~~~ 180 (617)
+.|+.||.+|||++ |++.|+.||.+++ .+.||.++..+|+.++ | ..|..+| .
T Consensus 108 q~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~----~-~~L~~~a--------~ 159 (571)
T KOG4441|consen 108 QELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHS----C-TELLEVA--------D 159 (571)
T ss_pred HHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcC----c-HHHHHHH--------H
Confidence 99999999999996 6789999999999 6789999999999998 6 3555555 2
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhhCCCCCC
Q 041399 181 SYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGK 260 (617)
Q Consensus 181 s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~L~~~~~ 260 (617)
.|+ ..+| ...+-.||+..|+.+.+..+|..-.-. ...++.++++++.|+++....+.
T Consensus 160 ~~i--~~~F-------------------~~v~~~eefl~L~~~~l~~ll~~d~l~-v~~E~~vf~a~~~Wv~~d~~~R~- 216 (571)
T KOG4441|consen 160 EYI--LQHF-------------------AEVSKTEEFLLLSLEELIGLLSSDDLN-VDSEEEVFEAAMRWVKHDFEERE- 216 (571)
T ss_pred HHH--HHHH-------------------HHHhccHHhhCCCHHHHHhhccccCCC-cCCHHHHHHHHHHHHhcCHhhHH-
Confidence 333 2234 234556899999999999999943222 35677899999999988776533
Q ss_pred CcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHHH
Q 041399 261 GMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKI 318 (617)
Q Consensus 261 ~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkrI 318 (617)
.+...+++.|+ + +.++..||...+.....+..+..|+..|..=.
T Consensus 217 --------~~~~~ll~~vr--~----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 217 --------EHLPALLEAVR--L----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred --------HHHHHHHHhcC--c----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 56788999999 6 46899999999999999999999999887644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-26 Score=259.68 Aligned_cols=226 Identities=13% Similarity=0.111 Sum_probs=177.2
Q ss_pred eeccCCceeEEEEEC-CEEEEecCcccccCCHHHHHhhcCC-CCC-CCCccccCCCCCChHHHHHHHHhhccceEEeecc
Q 041399 22 YVATELATDIVFNVG-DVKFYLHKFPLLSKSARLQKLVAAT-NDD-NSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAY 98 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~-g~~F~lHK~vLas~S~yfr~Lf~~~-~e~-~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~ 98 (617)
++.++.+|||+|.|+ |++|++||.|||++|+||++||++. +|. .+.+|+|+++ .+++|+.+++|+||++ |+.+
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHH
Confidence 688899999999998 8999999999999999999999986 554 3678999999 4799999999999997 7899
Q ss_pred cHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchhhhhHHHHHHHhccCCCCc
Q 041399 99 NVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKV 178 (617)
Q Consensus 99 NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~~~~ 178 (617)
||+.|+.||++|||++ |+..|++||.+.+ ...||.+++.+++.+. |.+ |..+|
T Consensus 95 nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~----~~~-L~~~a------- 147 (557)
T PHA02713 95 NVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMS----HIP-IVKYI------- 147 (557)
T ss_pred HHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhcc----chH-HHHHH-------
Confidence 9999999999999995 7889999999999 5789999998888776 433 54444
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhhCCCC
Q 041399 179 EWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKERVSADVIGEALNAYALQRLPGF 258 (617)
Q Consensus 179 ~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~L~~~ 258 (617)
..|. .++|+ ...-.|||..|+.+.+..+|..-..-.+..++.|.+++++|+++....+
T Consensus 148 -~~~i--~~~f~-------------------~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r 205 (557)
T PHA02713 148 -KRML--MSNIP-------------------TLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITE 205 (557)
T ss_pred -HHHH--HHHHH-------------------HHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHH
Confidence 1121 22231 0111379999999999999993211134567899999999998875432
Q ss_pred CCCcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHH
Q 041399 259 GKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRK 317 (617)
Q Consensus 259 ~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkr 317 (617)
.+...||+.|+ +| .++..+++ .+.....+..++.|+..|+.-
T Consensus 206 ----------~~~~~ll~~VR--~~----~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 206 ----------EQLLCILSCID--IQ----NLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred ----------HHHhhhHhhhh--Hh----hcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 23458999999 53 24556766 556667888899999988663
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.90 E-value=3.2e-24 Score=237.02 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=146.7
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCcccc--CCCCCChHHHHHHHHhhccceEEeecc
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPI--QDIPGGPAAFEICAKFCYGMTVTLNAY 98 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L--~d~PGgaeaFelvl~FcYg~~i~it~~ 98 (617)
++.+|.+|||+.. .|.+|+|||.|||++|+|||+||+++ +|+. .+|.+ .++ .+++|+.+++|+|||+|.||.+
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v--~~~~l~~lldy~YTg~l~it~~ 91 (480)
T PHA02790 16 LSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDL--DIHSLTSIVIYSYTGKVYIDSH 91 (480)
T ss_pred HHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCc--CHHHHHHHHHhheeeeEEEecc
Confidence 5678999998774 56699999999999999999999985 6664 35665 377 4799999999999999999999
Q ss_pred cHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchhhhhHHHHHHHhccCCCCc
Q 041399 99 NVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKV 178 (617)
Q Consensus 99 NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~~~~ 178 (617)
||+.|+.||.+|||++ |++.|++||.+++ .+.||.+++.+|+.|+ | +.|..+|
T Consensus 92 nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~----~-~~L~~~a------- 144 (480)
T PHA02790 92 NVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYG----L-SNLLCHT------- 144 (480)
T ss_pred cHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhC----H-HHHHHHH-------
Confidence 9999999999999996 6889999999999 5789999999999998 5 6677766
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHhhCC
Q 041399 179 EWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYALQRLP 256 (617)
Q Consensus 179 ~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~r~L~ 256 (617)
..|. .++|.. +.+ .-+|||..|++ ..+|. ++.+ .+++.|.+++++|+++.
T Consensus 145 -~~fi--~~nF~~----------------v~~-~~~~ef~~L~~---~~lLs---sd~L~v~~Ee~V~eav~~Wl~~~-- 196 (480)
T PHA02790 145 -KDFI--AKHFLE----------------LED-DIIDNFDYLSM---KLILE---SDELNVPDEDYVVDFVIKWYMKR-- 196 (480)
T ss_pred -HHHH--HHhHHH----------------Hhc-ccchhhhhCCH---HHhcc---cccCCCccHHHHHHHHHHHHHhh--
Confidence 2232 233411 010 01378999986 45665 5544 46778999999999852
Q ss_pred CCCCCcccCCchHHHHHHHHHHHH
Q 041399 257 GFGKGMIQNGDVTKYRSLVETIMW 280 (617)
Q Consensus 257 ~~~~~~~~~~~~~~~r~LLEtIv~ 280 (617)
. .....+++.|..
T Consensus 197 --~---------~~~~~l~~~vr~ 209 (480)
T PHA02790 197 --R---------NRLGNLLLLIKN 209 (480)
T ss_pred --H---------HHHHHHHHHHHh
Confidence 1 344567776654
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=4.2e-23 Score=229.36 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=173.0
Q ss_pred cCCceeEEEEE--CCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHHH
Q 041399 25 TELATDIVFNV--GDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVA 102 (617)
Q Consensus 25 ~~~~cDV~I~V--~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~ 102 (617)
++.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ + +++|+.+++|+|||+++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 68999999998 9999999999999999999999987633 46788888 4 6999999999999999999999999
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchhhhhHHHHHHHhccCCCCccccc
Q 041399 103 ARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSY 182 (617)
Q Consensus 103 L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~~~~~~s~ 182 (617)
|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.+++ +.|...| ..|
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~--------~~~ 132 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAA--------YNY 132 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHH--------HHH
Confidence 999999999995 7899999999988 57899999999999973 3333332 111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHhhCCCCCC
Q 041399 183 TYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYALQRLPGFGK 260 (617)
Q Consensus 183 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~r~L~~~~~ 260 (617)
. ..+|. .+. -.+||..|+.+.+..+|. ++.+ ..++.|.++++.|+++....+.
T Consensus 133 i--~~nf~----------~v~---------~~~~f~~l~~~~l~~ll~---~~~L~v~~E~~v~~av~~W~~~~~~~r~- 187 (534)
T PHA03098 133 I--RNNIE----------LIY---------NDPDFIYLSKNELIKILS---DDKLNVSSEDVVLEIIIKWLTSKKNNKY- 187 (534)
T ss_pred H--HHHHH----------HHh---------cCchhhcCCHHHHHHHhc---CCCcCcCCHHHHHHHHHHHHhcChhhhH-
Confidence 1 11110 000 125899999999999988 4444 4677899999999987654432
Q ss_pred CcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHH------HHhhhccCHHHHHHHHHHH
Q 041399 261 GMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLR------AAIMLECGETERTELMRKI 318 (617)
Q Consensus 261 ~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR------~A~~l~as~~cr~~LEkrI 318 (617)
.....|++.|+ + +.++..+|..+.+ ...++ .+..|+..|+...
T Consensus 188 --------~~~~~ll~~vR--~----~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 188 --------KDICLILKVLR--I----TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred --------hHHHHHHhhcc--c----cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 35578999999 6 4577788888776 33444 6778888776544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.64 E-value=2.5e-16 Score=138.50 Aligned_cols=103 Identities=26% Similarity=0.414 Sum_probs=89.1
Q ss_pred eeccCCceeEEEEEC-CEEEEecCcccccCCHHHHHhhcCC--CCCCCCccccCCCCCChHHHHHHHHhhccceEEee-c
Q 041399 22 YVATELATDIVFNVG-DVKFYLHKFPLLSKSARLQKLVAAT--NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLN-A 97 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~-g~~F~lHK~vLas~S~yfr~Lf~~~--~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it-~ 97 (617)
+..++.+||++|.|+ +.+|++||.+|+++|+||++||... .+....+|.+.+++ +++|+.+++|+|++.+.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 456789999999999 8999999999999999999999986 23333468889995 7999999999999999999 9
Q ss_pred ccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhc
Q 041399 98 YNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132 (617)
Q Consensus 98 ~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~ 132 (617)
+|+..++.+|++|+|+ .|+..|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~------~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIP------ELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcH------HHHHHHHHHHHhC
Confidence 9999999999999999 4899999999864
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.54 E-value=1.1e-14 Score=120.69 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=75.8
Q ss_pred eEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHHHHHHhHh
Q 041399 30 DIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAE 108 (617)
Q Consensus 30 DV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~L~cAA~ 108 (617)
||+|.|+|..|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999875 33346688888874 7999999999999999999999999999999
Q ss_pred hcCcch
Q 041399 109 YLEMYE 114 (617)
Q Consensus 109 yLqM~e 114 (617)
+++|++
T Consensus 79 ~~~~~~ 84 (90)
T smart00225 79 YLQIPG 84 (90)
T ss_pred HHCcHH
Confidence 999986
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.18 E-value=7e-11 Score=125.71 Aligned_cols=192 Identities=16% Similarity=0.222 Sum_probs=132.7
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeeccc
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
.+.......||++.|+++.|++||.+||++|.|||+|+-.+ .|+.+..|.|++- .+++|..+++|+|+|++.++...
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecccch
Confidence 35667788999999999999999999999999999998765 7877888888875 58999999999999999987543
Q ss_pred ---HHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchh---hhhHHHHHHHhcc
Q 041399 100 ---VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVV---SHCLDSIATKASI 173 (617)
Q Consensus 100 ---V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv---~rCidsLA~kA~~ 173 (617)
....+.-|...++. .|-..+.+||.+.+ .++|-..++..|--|.+. .-|.- .+
T Consensus 115 ed~lld~LslAh~Ygf~------~Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l~~Lt~~C~m------fm 173 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFI------QLETAISEYLKEIL---------KNENVCMIFDAAYLYQLTDLTDYCMM------FM 173 (620)
T ss_pred HHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHH---------cccceeeeeeHHHHhcchHHHHHHHH------HH
Confidence 33344455555555 46778899999876 456655555555555432 22311 01
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHH
Q 041399 174 DTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER-VSADVIGEALNAYAL 252 (617)
Q Consensus 174 d~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~-~~~e~I~~aL~~Ya~ 252 (617)
|- +. .+.---+-|..|+-+.++.++. .+.. .++.-|+-|+..|-+
T Consensus 174 Dr------------nA-------------------~~lL~~~sFn~LSk~sL~e~l~---RDsFfApE~~IFlAv~~W~~ 219 (620)
T KOG4350|consen 174 DR------------NA-------------------DQLLEDPSFNRLSKDSLKELLA---RDSFFAPELKIFLAVRSWHQ 219 (620)
T ss_pred hc------------CH-------------------HhhhcCcchhhhhHHHHHHHHh---hhcccchHHHHHHHHHHHHh
Confidence 10 00 0000012566788888888887 4444 455678888888864
Q ss_pred hhCCCCCCCcccCCchHHHHHHHHHHHHhcC
Q 041399 253 QRLPGFGKGMIQNGDVTKYRSLVETIMWLLP 283 (617)
Q Consensus 253 r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP 283 (617)
..- ....+.++|.|+ ||
T Consensus 220 ~Ns------------ke~~k~~~~~VR--LP 236 (620)
T KOG4350|consen 220 NNS------------KEASKVLLELVR--LP 236 (620)
T ss_pred cCc------------hhhHHHHHHHHh--hh
Confidence 321 145678888888 64
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.14 E-value=1.8e-10 Score=125.04 Aligned_cols=180 Identities=25% Similarity=0.297 Sum_probs=137.2
Q ss_pred eeccCCceeEEEEECC-----EEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEe
Q 041399 22 YVATELATDIVFNVGD-----VKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTL 95 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g-----~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~i 95 (617)
+..+...+|+.+.|++ +.||+||++|+..|.-|.+||... .+....+|+++|+. |.+|...++|+|+-.+.+
T Consensus 108 l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 108 LFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred hccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcchhhh
Confidence 5667889999999983 689999999999999999999986 44446799999995 699999999999999999
Q ss_pred ecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchhhhhHHHHHHHhccCC
Q 041399 96 NAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVVSHCLDSIATKASIDT 175 (617)
Q Consensus 96 t~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~ 175 (617)
.++||..++.||.-.-.+ .|...|.+||+..+..- +.+.-|-+| ..+.++..++++|++.|...+ .+.
T Consensus 186 ~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~~--naf~~L~q~---A~lf~ep~Li~~c~e~id~~~-~~a 253 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMAD--NAFLELFQR---AKLFDEPSLISICLEVIDKSF-EDA 253 (521)
T ss_pred hHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCCh--HHHHHHHHH---HHhhcCHHHHHHHHHHhhhHH-Hhh
Confidence 999999999999766665 58899999999988632 233333344 335667789999999775543 110
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHH
Q 041399 176 SKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER-VSADVIGEALNAYAL 252 (617)
Q Consensus 176 ~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~-~~~e~I~~aL~~Ya~ 252 (617)
+ .+ =||-|+-.+ .|.|..|+. .+.+ ..+-.+.+++..|+.
T Consensus 254 -------------l------------------~~--EGf~did~~-~dt~~evl~---r~~l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 254 -------------L------------------TP--EGFCDIDST-RDTYEEVLR---RDTLEAREFRLFEAALKWAE 294 (521)
T ss_pred -------------h------------------Cc--cceeehhhH-HHHHHHHHh---hcccchhHHHHHHHHHhhcc
Confidence 0 01 134454444 899999998 4444 335578889999985
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.78 E-value=9.8e-09 Score=101.22 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=106.3
Q ss_pred cCCCCcceecCC--ceeeeccCCceeEEEEEC---CEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHH
Q 041399 7 GSKPDSFQTEGN--NIRYVATELATDIVFNVG---DVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAF 81 (617)
Q Consensus 7 gsk~d~f~~~~~--~~~~~~~~~~cDV~I~V~---g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaF 81 (617)
.|-||+|..+=- ..-+.....++||+++++ ++.+++||+|||++|++.+ |.+..+.+..+..+.|. .+++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDa--d~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDA--DFEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhccccc--CHHHH
Confidence 466888876521 012567788999999998 6789999999999999764 44444444556777887 57999
Q ss_pred HHHHHhhccceEEeecccHHH--HHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhc
Q 041399 82 EICAKFCYGMTVTLNAYNVVA--ARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELK 158 (617)
Q Consensus 82 elvl~FcYg~~i~it~~NV~~--L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~ 158 (617)
...++++||-.|++..+.+.. +...|..+|.. -|..+|+.=|-..+ ...||..+..+||++.
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe------~Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLE------LLKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 999999999999998776654 78888888887 37889999888776 6899999999999986
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.46 E-value=3e-07 Score=98.54 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=103.4
Q ss_pred ccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccc--cCCCCCChHHHHHHHHhhccceEEeecccH
Q 041399 24 ATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMP--IQDIPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 24 ~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~--L~d~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
.+|.-+||+|.+-|.+.++||.-| .-|+||..||.+. +|++...|+ |.|=--...+|..++.=.|..+|+|..+-|
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred hcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHH
Confidence 467889999999999999999877 6799999999986 666655444 443222579999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhchh
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKVV 160 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~Iv 160 (617)
..++.||.+||+. .|+++|.+-+.+.+ ..++-.+....+..||++
T Consensus 144 ~gvlAaA~~lqld------gl~qrC~evMie~l---------spkta~~yYea~ckYgle 188 (488)
T KOG4682|consen 144 VGVLAAACLLQLD------GLIQRCGEVMIETL---------SPKTACGYYEAACKYGLE 188 (488)
T ss_pred HHHHHHHHHHHHh------hHHHHHHHHHHHhc---------ChhhhhHhhhhhhhhhhH
Confidence 9999999999998 48999999999998 467888889999999853
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.17 E-value=1.9e-06 Score=98.68 Aligned_cols=65 Identities=32% Similarity=0.515 Sum_probs=53.8
Q ss_pred CCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCC-----------C--CCccccCCCCCChHHHHHHHHhhccce
Q 041399 26 ELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDD-----------N--SDEMPIQDIPGGPAAFEICAKFCYGMT 92 (617)
Q Consensus 26 ~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~-----------~--~~~V~L~d~PGgaeaFelvl~FcYg~~ 92 (617)
+-..|||+.||+..|++||++|+++|++||+||...... . ...|.+.++|| .+||+++.|+||.+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 346799999999999999999999999999999753111 1 13566789985 99999999999976
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.15 E-value=1.9e-06 Score=98.67 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=94.1
Q ss_pred eeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhcc-ceEEe-----ecccHH
Q 041399 29 TDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYG-MTVTL-----NAYNVV 101 (617)
Q Consensus 29 cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg-~~i~i-----t~~NV~ 101 (617)
|||+++ +|+.|+|||.+|++++.||..||... .|... |...++|-.+|.++.|++|.|. -++.+ ..+=+.
T Consensus 713 ~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 713 TVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred EEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 444444 78889999999999999999999864 44433 5555666578999999999993 34332 122356
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHh---chhhhhHHHHHH
Q 041399 102 AARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEEL---KVVSHCLDSIAT 169 (617)
Q Consensus 102 ~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~---~Iv~rCidsLA~ 169 (617)
.++..|+.|=+++ |...||.-|.+.+ .|++|-.|+.+|.-| .+-.+|+|=|.-
T Consensus 790 ~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~ 845 (1267)
T KOG0783|consen 790 EILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICH 845 (1267)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6788888888885 7889999999888 699999999998877 456788886544
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.46 E-value=7.1e-05 Score=79.27 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=75.5
Q ss_pred EEEEEC------CEEEEecCcccccCCHHHHHhhcC--CCCCCCCcccc--C-CCCCChHHHHHHHHhhccceEEeeccc
Q 041399 31 IVFNVG------DVKFYLHKFPLLSKSARLQKLVAA--TNDDNSDEMPI--Q-DIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 31 V~I~V~------g~~F~lHK~vLas~S~yfr~Lf~~--~~e~~~~~V~L--~-d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
|+|+|- .+.|.|.+.+|.+.=.||+..+.. .......+|+| + |+ .+|+-+++|+++-...||+.|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 456663 357999999999999999999954 11112234554 4 76 899999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
|+.++-.++||||++ |++.|-.|+..++
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999995 8889999987766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.69 E-value=0.0024 Score=57.02 Aligned_cols=79 Identities=14% Similarity=0.335 Sum_probs=60.4
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCC--CCCCCccccCCCCCChHHHHHHHHhhccce-----------E---
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAATN--DDNSDEMPIQDIPGGPAAFEICAKFCYGMT-----------V--- 93 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~--e~~~~~V~L~d~PGgaeaFelvl~FcYg~~-----------i--- 93 (617)
|++.- +|..|.+.+.+. ..|+-++.|+.... +.+...|.|++|+| .+++.|++||+-.. +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45554 689999999865 68999999998642 22225799999975 99999999998321 1
Q ss_pred -----EeecccHHHHHHhHhhcCc
Q 041399 94 -----TLNAYNVVAARCAAEYLEM 112 (617)
Q Consensus 94 -----~it~~NV~~L~cAA~yLqM 112 (617)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1566688999999999986
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.017 Score=59.14 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=74.7
Q ss_pred EEEEECCEEEEecCcccccCCHHHHHhhcCCC--CCCC-CccccCCCCCChHHHHHHHHhhccceEEe--ecccHHHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKSARLQKLVAATN--DDNS-DEMPIQDIPGGPAAFEICAKFCYGMTVTL--NAYNVVAARC 105 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~--e~~~-~~V~L~d~PGgaeaFelvl~FcYg~~i~i--t~~NV~~L~c 105 (617)
|.+.|||..|..+|.-|--..|||+.|+...- +.+. ..|-|.- .|.=|++|++|+=.|.+.| +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998752 2222 2344432 4699999999999777665 5577789999
Q ss_pred hHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 106 AAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 106 AA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999995 8899998776654
No 17
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.06 E-value=0.0034 Score=54.58 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=60.5
Q ss_pred EEEEECCEEEEecCcccc-cCCHHHHHhhcCC----CCCCCCccccCCCCCChHHHHHHHHhhcc-ceEEee-cccHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLL-SKSARLQKLVAAT----NDDNSDEMPIQDIPGGPAAFEICAKFCYG-MTVTLN-AYNVVAA 103 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLa-s~S~yfr~Lf~~~----~e~~~~~V~L~d~PGgaeaFelvl~FcYg-~~i~it-~~NV~~L 103 (617)
|+|.|||+.|.+-+..|. -...+|.+|+... .......+-|. = .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-R--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-R--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-c--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4467999999853 12233455543 2 57999999999999 777764 6788889
Q ss_pred HHhHhhcCcchh
Q 041399 104 RCAAEYLEMYET 115 (617)
Q Consensus 104 ~cAA~yLqM~e~ 115 (617)
+..|+|.++.+.
T Consensus 78 ~~Ea~fy~l~~l 89 (94)
T PF02214_consen 78 LEEAEFYGLDEL 89 (94)
T ss_dssp HHHHHHHT-HHH
T ss_pred HHHHHHcCCCcc
Confidence 999999999863
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.67 E-value=0.023 Score=59.23 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=70.2
Q ss_pred CcceecCCceeeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCC---CCccccCCCCCChHHHHHHHHh
Q 041399 11 DSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDN---SDEMPIQDIPGGPAAFEICAKF 87 (617)
Q Consensus 11 d~f~~~~~~~~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~---~~~V~L~d~PGgaeaFelvl~F 87 (617)
.+|+++=.+ .....+..||-|......|++||+.|+++|++|+-+.....+.+ ...++.-+|. -++|+..+++
T Consensus 115 ~sf~kD~ad--~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~ 190 (401)
T KOG2838|consen 115 NSFLKDFAD--GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHS 190 (401)
T ss_pred hHHHHHHhh--hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHH
Confidence 456555322 23446778999999999999999999999999999887764433 2456677884 5999999999
Q ss_pred hccceEE---eecccHHHHHHhHhhcCc
Q 041399 88 CYGMTVT---LNAYNVVAARCAAEYLEM 112 (617)
Q Consensus 88 cYg~~i~---it~~NV~~L~cAA~yLqM 112 (617)
.|+++.- +.-.|+..|-.-.+-++-
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCC
Confidence 9998763 334556555544444443
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.82 E-value=0.11 Score=42.35 Aligned_cols=55 Identities=9% Similarity=0.342 Sum_probs=42.9
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhc
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCY 89 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcY 89 (617)
|+|.- +|+.|.+.+.+. -.|+.++.|+........ .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 689999988854 589999999987533322 79999996 599999999997
No 20
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=93.35 E-value=0.16 Score=45.68 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=58.6
Q ss_pred CCEEEEecCcccccCCHHHHHhhcCC---CCCCCCccccCCCCCChHHHHHHHHhh-----ccc------eEEeecccHH
Q 041399 36 GDVKFYLHKFPLLSKSARLQKLVAAT---NDDNSDEMPIQDIPGGPAAFEICAKFC-----YGM------TVTLNAYNVV 101 (617)
Q Consensus 36 ~g~~F~lHK~vLas~S~yfr~Lf~~~---~e~~~~~V~L~d~PGgaeaFelvl~Fc-----Yg~------~i~it~~NV~ 101 (617)
+|.+|-+-|- +|.-||-+|+|+.+. .+....+|.+.+|| +..+|.+..|. |++ +++|-++-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5788888665 677899999999963 45556789999997 58999988775 443 3567888899
Q ss_pred HHHHhHhhcCc
Q 041399 102 AARCAAEYLEM 112 (617)
Q Consensus 102 ~L~cAA~yLqM 112 (617)
.|+.||+||+.
T Consensus 102 eLL~aAn~Lec 112 (112)
T KOG3473|consen 102 ELLMAANYLEC 112 (112)
T ss_pred HHHHHhhhhcC
Confidence 99999999973
No 21
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=93.10 E-value=0.011 Score=51.31 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=44.2
Q ss_pred ccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHhhCCCCCCCcccCCchHHHHHHHHHHHHhcCCCCCCcchH
Q 041399 215 EDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCG 292 (617)
Q Consensus 215 EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~ 292 (617)
++|..|+++.+..++. +..+ ..+..|.++++.|+++....+. .....|++.|+ + +.+|..
T Consensus 35 ~~f~~L~~~~l~~iL~---~~~l~v~~E~~v~~av~~W~~~~~~~r~---------~~~~~Ll~~iR--~----~~l~~~ 96 (103)
T PF07707_consen 35 DEFLELPFDQLIEILS---SDDLNVSSEDDVFEAVLRWLKHNPENRE---------EHLKELLSCIR--F----PLLSPE 96 (103)
T ss_dssp HHHHCS-HHHHHHHHH---TSS--ECTCCCHHHHHHHHHHCTHHHHT---------TTHHHHHCCCH--H----HCT-HH
T ss_pred hhhhcCCHHHHHHHHh---ccccccccHHHHHHHHHHHHHhCHHHHH---------HHHHHHHHhCC--c----ccCCHH
Confidence 5899999999999999 4444 4556899999999987654322 34567888887 3 235666
Q ss_pred HHHHH
Q 041399 293 FLLKL 297 (617)
Q Consensus 293 FL~~L 297 (617)
+|.+.
T Consensus 97 ~L~~~ 101 (103)
T PF07707_consen 97 ELQNV 101 (103)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66543
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.15 Score=49.78 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=68.1
Q ss_pred CCEEEEecCcccccCCHHHHHhhcCCC-CCCCCccccCCCCCChHHHHHHHHhhccceE---------------------
Q 041399 36 GDVKFYLHKFPLLSKSARLQKLVAATN-DDNSDEMPIQDIPGGPAAFEICAKFCYGMTV--------------------- 93 (617)
Q Consensus 36 ~g~~F~lHK~vLas~S~yfr~Lf~~~~-e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i--------------------- 93 (617)
+|+.|..-..+ |-.|.-++.++.+.. ......|-|+.|. +.+|..|+.|||--+-
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 68888887764 577899999987641 1111478888985 5999999999996331
Q ss_pred ----EeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 94 ----TLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 94 ----~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
.+...++..|.-||.||+|. .|+..|+..+...+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHH
Confidence 13445889999999999999 58888888888766
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=82.41 E-value=0.95 Score=47.66 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred EEEecCcccccCCHHHHHhhcC----CCCC------CCCccccCC--CCCChHHHH-HHHHhhccceEEee
Q 041399 39 KFYLHKFPLLSKSARLQKLVAA----TNDD------NSDEMPIQD--IPGGPAAFE-ICAKFCYGMTVTLN 96 (617)
Q Consensus 39 ~F~lHK~vLas~S~yfr~Lf~~----~~e~------~~~~V~L~d--~PGgaeaFe-lvl~FcYg~~i~it 96 (617)
++.+||.+.+++|++||.|+.. ..|. ....|.+.. || .+|. +++.|.||-.++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchh
Confidence 5789999999999999999753 2221 124566643 44 6665 45789999888764
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.90 E-value=5.4 Score=42.76 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=64.3
Q ss_pred eccCCceeEEEEECCEEEEecCcccccCCH-HHHHhhcCC----CCCCCCcccc-CCCCCChHHHHHHHHhhccceEEee
Q 041399 23 VATELATDIVFNVGDVKFYLHKFPLLSKSA-RLQKLVAAT----NDDNSDEMPI-QDIPGGPAAFEICAKFCYGMTVTLN 96 (617)
Q Consensus 23 ~~~~~~cDV~I~V~g~~F~lHK~vLas~S~-yfr~Lf~~~----~e~~~~~V~L-~d~PGgaeaFelvl~FcYg~~i~it 96 (617)
+..|-.--++..|++..|..-+++|-+.-. -+-.||... ...+..+.++ .|+ +...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 344555567889999999999998877633 234566542 1222345666 466 68999999999888888764
Q ss_pred c-ccHHHHHHhHhhcCcc
Q 041399 97 A-YNVVAARCAAEYLEMY 113 (617)
Q Consensus 97 ~-~NV~~L~cAA~yLqM~ 113 (617)
+ -.|-.|+.|.+||-++
T Consensus 168 ~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVP 185 (438)
T ss_pred CCCchHHHHhhcceEEee
Confidence 3 5678899999999887
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=76.38 E-value=4.8 Score=44.87 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=59.1
Q ss_pred EEEEECCEEEEecCcccccCC--HHHHHhhcCC--CCCCCC-ccccCCCCCChHHHHHHHHhhccceEEeecccHHHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKS--ARLQKLVAAT--NDDNSD-EMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARC 105 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S--~yfr~Lf~~~--~e~~~~-~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~L~c 105 (617)
|.+.|||+.|.--+.-|+.-. .+|-+|++.. ...... .|-|. -.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 578999999999998887665 6899999753 111111 23332 256999999999999999995544444444
Q ss_pred -hHhhcCcch
Q 041399 106 -AAEYLEMYE 114 (617)
Q Consensus 106 -AA~yLqM~e 114 (617)
=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 889999986
No 26
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=75.47 E-value=5.6 Score=43.80 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=56.3
Q ss_pred EEEEecCcccccCCHHHHHhhcCC-CCCC-CC---ccccCCCCCChHHHHHHHHhhccceEEeecccHHHHHHhHhhcCc
Q 041399 38 VKFYLHKFPLLSKSARLQKLVAAT-NDDN-SD---EMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEM 112 (617)
Q Consensus 38 ~~F~lHK~vLas~S~yfr~Lf~~~-~e~~-~~---~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~L~cAA~yLqM 112 (617)
..+|+|..++ ++..||+.||.+. .|+. +. ...++.+ .....|++++|.|+-+-+|-+.-...++--|..|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999987 6789999999975 4421 22 2334444 357899999999999999988888888888888766
Q ss_pred chh
Q 041399 113 YET 115 (617)
Q Consensus 113 ~e~ 115 (617)
..+
T Consensus 378 ~~d 380 (516)
T KOG0511|consen 378 ADD 380 (516)
T ss_pred hhh
Confidence 643
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=70.19 E-value=0.79 Score=50.16 Aligned_cols=87 Identities=22% Similarity=0.054 Sum_probs=53.2
Q ss_pred eeccCC--ceeEEEEE-CCEEEEecCcccccCCHHHHHhhc-CCCCCCCCcc-ccCCCCCChHHHHHHHHhhccceEEee
Q 041399 22 YVATEL--ATDIVFNV-GDVKFYLHKFPLLSKSARLQKLVA-ATNDDNSDEM-PIQDIPGGPAAFEICAKFCYGMTVTLN 96 (617)
Q Consensus 22 ~~~~~~--~cDV~I~V-~g~~F~lHK~vLas~S~yfr~Lf~-~~~e~~~~~V-~L~d~PGgaeaFelvl~FcYg~~i~it 96 (617)
++.+++ ..|++..+ +|..|-+||+.|+++|.||..-+. ....+ .+| .+.-+ +.+|+..++|.|-..=.+-
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--heI~~~~v~---~~~f~~flk~lyl~~na~~ 215 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--HEIEAHRVI---LSAFSPFLKQLYLNTNAEW 215 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--Cchhhhhhh---HhhhhHHHHHHHHhhhhhh
Confidence 455554 44888877 488999999999999887754332 22111 233 33444 4899999999996522222
Q ss_pred cccHHHHHHhHhhcCcc
Q 041399 97 AYNVVAARCAAEYLEMY 113 (617)
Q Consensus 97 ~~NV~~L~cAA~yLqM~ 113 (617)
+.--.+|+.-..-++..
T Consensus 216 ~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 216 KDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhHHHHHHhhhhhccHH
Confidence 22224455554444443
No 28
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=62.49 E-value=6.8 Score=33.16 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred ccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHHhhCCCCCCCcccCCchHHHHHHHHHHHHhcCCCCCCcchH
Q 041399 215 EDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCG 292 (617)
Q Consensus 215 EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~ 292 (617)
++|..|+.+.+..+|. +..+ ..+..+.++++.|+++.... ......+++.|+ + +.+|..
T Consensus 35 ~~f~~L~~~~l~~iL~---~d~l~v~~E~~v~~av~~W~~~~~~~----------~~~~~~ll~~ir--~----~~~~~~ 95 (101)
T smart00875 35 EEFLELSLEQLLSLLS---SDDLNVPSEEEVFEAVLRWVKHDPER----------RRHLPELLSHVR--F----PLLSPE 95 (101)
T ss_pred cHHhcCCHHHHHHHhC---cccCCCCCHHHHHHHHHHHHHCCHHH----------HHHHHHHHHhCC--C----CCCCHH
Confidence 5899999999999998 4333 35678899999998765310 123456777777 4 335555
Q ss_pred HHHH
Q 041399 293 FLLK 296 (617)
Q Consensus 293 FL~~ 296 (617)
+|.+
T Consensus 96 ~l~~ 99 (101)
T smart00875 96 YLLE 99 (101)
T ss_pred HHHh
Confidence 5543
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=59.71 E-value=6.1 Score=33.69 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.9
Q ss_pred eecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 95 LNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 95 it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
++...+..|+.||.||+|. .|+..|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~------~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIK------GLLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-H------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHh
Confidence 3667899999999999999 58889999988766
No 30
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=59.15 E-value=5.8 Score=35.31 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=33.0
Q ss_pred hcCCccccchhHHHHHHHHHhhCCCCCHHHHhhhhcccccCCCC
Q 041399 406 VSIFPRQSHDGLYRAIDMYLKEHPGISKSERKRICRLMDCRKLS 449 (617)
Q Consensus 406 lP~~aR~~hDgLYrAIDiYLK~Hp~ls~~Er~~lCr~mdc~KLS 449 (617)
+|++..-....||+|+..||.+....+. .|-++++.-|-+.++
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~ 72 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLV 72 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceE
Confidence 3444445678999999999999988776 888888887776643
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=57.09 E-value=35 Score=35.44 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=64.4
Q ss_pred EEEEECCEEEEecCcccccCC--HHHHHhhcCC----CCCCCCccccCCCCCChHHHHHHHHhhccceEE-eecccHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKS--ARLQKLVAAT----NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVT-LNAYNVVAA 103 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S--~yfr~Lf~~~----~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~-it~~NV~~L 103 (617)
|.+.+||+.|.--..-|.-+= .-+-+||... .+.++.-+-| |= .|.-||-|++|.-.|.|. .+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DR--sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DR--SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-cc--CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 668899999988887777763 4678899863 2222223333 33 459999999999988764 567899999
Q ss_pred HHhHhhcCcchhhccccHHHHHHH
Q 041399 104 RCAAEYLEMYETVEKGNLIYKIEV 127 (617)
Q Consensus 104 ~cAA~yLqM~e~~~~gNL~~~ce~ 127 (617)
+.+|.|+|+-. |++..|+
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999984 5555555
No 32
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=52.87 E-value=45 Score=31.89 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEE-EECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEe--------------
Q 041399 31 IVF-NVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTL-------------- 95 (617)
Q Consensus 31 V~I-~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~i-------------- 95 (617)
|.| ..+|+.|.+.+. .|-+|-.++.|+....+.+ ..+.++.+ .+..|..+.+||---+=.+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~n-~p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTACN-YPIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccccccC-CCCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 344 357899999887 6788999999887654433 23455666 5789999999996322111
Q ss_pred -----------ecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 96 -----------NAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 96 -----------t~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
...-...+.-||.||++.. |++.||.-..+.+
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 1223445667888888874 6777777776655
No 33
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=51.64 E-value=53 Score=37.44 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=60.6
Q ss_pred cccccCCCCcceecCCceeeeccCCceeEEEEECCEEEEecCcccccC-CHHHHHhhcCCC-----------CCCCCccc
Q 041399 3 FMKLGSKPDSFQTEGNNIRYVATELATDIVFNVGDVKFYLHKFPLLSK-SARLQKLVAATN-----------DDNSDEMP 70 (617)
Q Consensus 3 ~mklgsk~d~f~~~~~~~~~~~~~~~cDV~I~V~g~~F~lHK~vLas~-S~yfr~Lf~~~~-----------e~~~~~V~ 70 (617)
++..|..|+..+.++ ....-|+|+|||..+.+-+..|... =.++.+|....+ +....+.-
T Consensus 13 ~~~~~~~~~~~~~~~--------~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Eyf 84 (477)
T KOG3713|consen 13 VPVGGPEPEGIIRDG--------ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYF 84 (477)
T ss_pred ccccCCCCccccCCC--------CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeee
Confidence 344555555554442 2344588999999999988877662 224444444211 11123344
Q ss_pred cCCCCCChHHHHHHHHhhccceEEeecccHHHHHH--hHhhcCcch
Q 041399 71 IQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARC--AAEYLEMYE 114 (617)
Q Consensus 71 L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~L~c--AA~yLqM~e 114 (617)
+. -.|.+|..|++|-+||++.. +.+|..+.- =-+|=++.+
T Consensus 85 FD---R~P~~F~~Vl~fYrtGkLH~-p~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 85 FD---RHPGAFAYVLNFYRTGKLHV-PADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred ec---cChHHHHHHHHHHhcCeecc-ccccchHHHHHHHHHhCCCh
Confidence 33 34689999999999999987 556655433 334556665
No 34
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.47 E-value=20 Score=37.32 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=61.7
Q ss_pred CEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHH---HHHHhHhhcCc
Q 041399 37 DVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVV---AARCAAEYLEM 112 (617)
Q Consensus 37 g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~---~L~cAA~yLqM 112 (617)
+..+..|+.++++++.-|+.|+... .+.....+.+.+. +++.|+.+..|.|...-.-+..++. .+.++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999988764 2222334466666 4689999999999854333334443 55556555554
Q ss_pred chhhccccHHHHHHHHhhhcc
Q 041399 113 YETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 113 ~e~~~~gNL~~~ce~FL~~~v 133 (617)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 4 57888988888765
No 35
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=40.61 E-value=83 Score=31.45 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=60.8
Q ss_pred EEEEECCEEEEecCcccccCC-HHHHHhhcCCC----CCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHHHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKS-ARLQKLVAATN----DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVAARC 105 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S-~yfr~Lf~~~~----e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~L~c 105 (617)
|-+.|||..|.--|.-|.--+ .|+.+++.... +.+..---|-|= .|.-|.-|++|.--|++-++.--=+.++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 567899999999999998887 56666665432 222223334333 46899999999999999998855566888
Q ss_pred hHhhcCcch
Q 041399 106 AAEYLEMYE 114 (617)
Q Consensus 106 AA~yLqM~e 114 (617)
-|+|...+.
T Consensus 101 EAefyn~~~ 109 (210)
T KOG2715|consen 101 EAEFYNDPS 109 (210)
T ss_pred hhhccCChH
Confidence 888888874
No 36
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.12 E-value=33 Score=28.18 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhCCCCCHH
Q 041399 415 DGLYRAIDMYLKEHPGISKS 434 (617)
Q Consensus 415 DgLYrAIDiYLK~Hp~ls~~ 434 (617)
-.||.|+.-||+.||+-...
T Consensus 8 e~L~~~m~~fie~hP~WDQ~ 27 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQY 27 (57)
T ss_pred HHHHHHHHHHHHcCCCchHH
Confidence 46999999999999997654
No 37
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=31.20 E-value=35 Score=34.88 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=24.1
Q ss_pred CCccccchhHHHHHHHHHhhCCCCCHHHHh
Q 041399 408 IFPRQSHDGLYRAIDMYLKEHPGISKSERK 437 (617)
Q Consensus 408 ~~aR~~hDgLYrAIDiYLK~Hp~ls~~Er~ 437 (617)
+..+..-+|=|+||..|||.||+==|.++.
T Consensus 190 ~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 190 VLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 566667999999999999999965555543
No 38
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=27.10 E-value=49 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHhhCCCCCHHHHhh
Q 041399 414 HDGLYRAIDMYLKEHPGISKSERKR 438 (617)
Q Consensus 414 hDgLYrAIDiYLK~Hp~ls~~Er~~ 438 (617)
.|+.|.| .+.+|.+||++|-..
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~ 31 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAA 31 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHH
Confidence 3999998 589999999998543
No 39
>PHA00617 ribbon-helix-helix domain containing protein
Probab=25.43 E-value=1.1e+02 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=33.0
Q ss_pred cccCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhh
Q 041399 218 CELHIDLYKRVISTIKTKERVSADVIGEALNAYALQR 254 (617)
Q Consensus 218 ~~L~idl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~ 254 (617)
..|+.++.+++-.-.+..|....++|-+||..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 4589999999999888999988899999999998776
No 40
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.35 E-value=53 Score=28.55 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhhCCC
Q 041399 415 DGLYRAIDMYLKEHPG 430 (617)
Q Consensus 415 DgLYrAIDiYLK~Hp~ 430 (617)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999964
No 41
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=21.09 E-value=70 Score=34.72 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEEe-cCcccccCCHHHHHhhcCC-CCCCCCccccCC-CCCChHHH
Q 041399 38 VKFYL-HKFPLLSKSARLQKLVAAT-NDDNSDEMPIQD-IPGGPAAF 81 (617)
Q Consensus 38 ~~F~l-HK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d-~PGgaeaF 81 (617)
.+|.+ -|+++++.-.-|+.+|... .|...+.+.+++ ||||.|..
T Consensus 160 ~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~q 206 (415)
T COG3919 160 VHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQ 206 (415)
T ss_pred ceeehhhheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCccc
Confidence 44443 4667777777888888764 445556666654 78887753
No 42
>PHA03098 kelch-like protein; Provisional
Probab=20.93 E-value=4.2e+02 Score=29.95 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHHHHhcccccCcccee
Q 041399 274 LVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKIGQQLEEATAADLL 331 (617)
Q Consensus 274 LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkrIg~qLd~AtldDLL 331 (617)
.++.|+..+=..+-.++..-+..||.+|..++... .+..-++.+...|+..+.-++|
T Consensus 58 ~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~-l~~~C~~~l~~~l~~~nc~~~~ 114 (534)
T PHA03098 58 SFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF-LINLCINYIIKIIDDNNCIDIY 114 (534)
T ss_pred HHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHhCCHhHHHHHH
Confidence 55555555544444466666778888888887542 2333333333444444444444
Done!