Query 041399
Match_columns 617
No_of_seqs 315 out of 983
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hve_A Gigaxonin; ubiquitin, c 99.9 1.5E-28 5E-33 246.9 7.4 224 21-316 24-256 (256)
2 3i3n_A Kelch-like protein 11; 99.9 4.8E-28 1.6E-32 246.3 7.6 225 22-318 26-265 (279)
3 3htm_A Speckle-type POZ protei 99.8 4.4E-21 1.5E-25 180.2 7.6 121 21-158 27-148 (172)
4 2vkp_A BTB/POZ domain-containi 99.8 6E-21 2.1E-25 167.2 7.1 103 22-133 2-109 (109)
5 4eoz_A Speckle-type POZ protei 99.8 1.2E-21 4.2E-26 179.1 1.0 122 21-159 18-140 (145)
6 2if5_A Zinc finger and BTB dom 99.8 1E-20 3.5E-25 168.9 6.7 101 22-130 19-120 (120)
7 2vpk_A Myoneurin; transcriptio 99.8 1.2E-20 4.2E-25 167.6 6.7 99 22-131 16-116 (116)
8 1r29_A B-cell lymphoma 6 prote 99.8 1.8E-20 6.2E-25 169.1 7.4 102 22-132 23-126 (127)
9 3b84_A Zinc finger and BTB dom 99.8 7.1E-21 2.4E-25 170.6 4.6 100 22-132 18-117 (119)
10 1buo_A POZ domain, protein (pr 99.8 1.9E-20 6.6E-25 168.0 6.0 99 22-132 22-120 (121)
11 2yy9_A Zinc finger and BTB dom 99.8 9.2E-21 3.1E-25 173.8 3.8 102 22-134 19-120 (135)
12 2q81_A MIZ-1 protein; BTB/POZ 99.8 2.2E-20 7.4E-25 167.4 5.7 97 22-130 21-117 (119)
13 2z8h_A Transcription regulator 99.8 3.1E-20 1.1E-24 170.5 6.9 107 21-136 29-136 (138)
14 3ga1_A Nucleus accumbens-assoc 99.8 1.7E-20 5.8E-25 170.1 4.2 100 22-132 27-127 (129)
15 3ohu_A Transcription regulator 99.8 1.6E-20 5.5E-25 169.0 3.4 99 22-129 26-125 (125)
16 2ppi_A Gigaxonin; BTB domain, 99.8 4E-20 1.4E-24 171.7 5.6 101 22-130 41-144 (144)
17 3m5b_A Zinc finger and BTB dom 99.8 5.6E-20 1.9E-24 165.9 5.8 93 23-131 25-117 (119)
18 2ihc_A Transcription regulator 99.8 4.3E-20 1.5E-24 166.6 3.5 101 21-130 22-123 (124)
19 3hqi_A Speckle-type POZ protei 99.8 4.7E-19 1.6E-23 182.4 7.8 131 22-169 168-302 (312)
20 3fkc_A Transcriptional regulat 99.7 3.1E-18 1E-22 153.3 4.8 87 22-114 25-112 (116)
21 2ast_A S-phase kinase-associat 99.3 6.2E-13 2.1E-17 125.8 4.6 95 31-134 3-127 (159)
22 4ajy_C Transcription elongatio 99.1 3.6E-11 1.2E-15 104.8 5.3 79 31-112 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 2.8E-10 9.6E-15 105.7 5.3 92 31-134 4-122 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 3.7E-10 1.2E-14 107.1 0.6 93 31-134 6-126 (160)
25 1hv2_A Elongin C, ELC1; protei 98.3 6.4E-07 2.2E-11 78.5 5.0 79 31-112 6-99 (99)
26 2fnj_C Transcription elongatio 98.2 7.2E-07 2.5E-11 77.7 4.3 79 31-112 3-96 (96)
27 3v7d_A Suppressor of kinetocho 98.1 1.6E-06 5.3E-11 83.0 4.8 95 30-133 8-133 (169)
28 1vcb_B Protein (elongin C); tu 97.6 3.2E-05 1.1E-09 69.3 3.1 79 31-112 19-112 (112)
29 3drz_A BTB/POZ domain-containi 97.3 0.00053 1.8E-08 60.5 7.2 92 30-130 7-105 (107)
30 2eqx_A Kelch repeat and BTB do 96.7 0.00019 6.7E-09 62.8 -0.9 90 143-279 9-98 (105)
31 3drx_A BTB/POZ domain-containi 95.4 0.029 1E-06 55.1 7.2 93 30-131 13-112 (202)
32 3kvt_A Potassium channel prote 92.9 0.047 1.6E-06 48.9 2.7 82 31-115 7-92 (115)
33 1s1g_A Potassium voltage-gated 91.4 0.11 3.6E-06 47.2 3.1 80 30-115 14-99 (124)
34 1t1d_A Protein (potassium chan 90.2 0.16 5.3E-06 44.4 2.9 82 31-115 3-89 (100)
35 2nz0_B Potassium voltage-gated 88.8 0.17 5.9E-06 46.8 2.3 82 28-115 34-121 (140)
36 1nn7_A Potassium channel KV4.2 86.6 0.13 4.5E-06 45.1 -0.0 79 31-115 2-86 (105)
37 1pd7_B MAD1; PAH2, SIN3, eukar 68.3 1.4 4.8E-05 29.4 0.6 17 98-114 3-19 (26)
38 1vjh_A BET V I allergen family 45.5 16 0.00055 32.2 3.7 31 389-430 92-122 (122)
39 2r9r_B Paddle chimera voltage 43.0 11 0.00038 41.4 2.7 83 30-115 53-140 (514)
40 2eqx_A Kelch repeat and BTB do 22.7 61 0.0021 27.5 3.4 34 94-133 7-40 (105)
No 1
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=1.5e-28 Score=246.87 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=166.3
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-C--CCCCCccccCCCCCChHHHHHHHHhhccceEEeec
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-N--DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA 97 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~--e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~ 97 (617)
.++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. . +....+|.|++++ +++|+.+++|+|||++.++.
T Consensus 24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~ 101 (256)
T 3hve_A 24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE 101 (256)
T ss_dssp TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence 47889999999999999999999999999999999999874 3 4566789999995 79999999999999999999
Q ss_pred ccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhch---hhhhHHHHHHHhccC
Q 041399 98 YNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKV---VSHCLDSIATKASID 174 (617)
Q Consensus 98 ~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~I---v~rCidsLA~kA~~d 174 (617)
+||..++.||++|||++ |+..|+.||.+.+ ...||..++.+|+.+++ ...|.+-|+...
T Consensus 102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f--- 163 (256)
T 3hve_A 102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCI---------AAENCIGIRDFALHYCLHHVHYLATEYLETHF--- 163 (256)
T ss_dssp CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTC---------CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHChHH------HHHHHHHHHHhhC---------CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHH---
Confidence 99999999999999995 7899999999988 45799999999999973 333333232221
Q ss_pred CCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC--CChhhHHHHHHHHHH
Q 041399 175 TSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER--VSADVIGEALNAYAL 252 (617)
Q Consensus 175 ~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~aL~~Ya~ 252 (617)
...+-.+++..|+.+.+..+|. +..+ ..++.|.++++.|++
T Consensus 164 ----------------------------------~~v~~~~~f~~L~~~~l~~lL~---~d~L~v~~E~~v~~av~~W~~ 206 (256)
T 3hve_A 164 ----------------------------------RDVSSTEEFLELSPQKLKEVIS---LEKLNVGNERYVFEAVIRWIA 206 (256)
T ss_dssp ----------------------------------HHHTTCHHHHSSCHHHHHHHHH---CC-------CTTHHHHTTTCC
T ss_pred ----------------------------------HHHhCCcchhcCCHHHHHHHHc---cCCCCCCCHHHHHHHHHHHHH
Confidence 0011246899999999999999 5544 346788999998887
Q ss_pred hhCCCCCCCcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccC-HHHHHHHHH
Q 041399 253 QRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECG-ETERTELMR 316 (617)
Q Consensus 253 r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as-~~cr~~LEk 316 (617)
+....+. .....|++.|+ + +.+|..||...++...++..+ +.||..|++
T Consensus 207 ~~~~~R~---------~~~~~ll~~VR--f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 207 HDTEIRK---------VHMKDVMSALW--V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp C--CCST---------TTHHHHHHHHH--H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred cCHHHHH---------HHHHHHHHhCC--C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence 7655443 45678999999 5 457888999999999999988 689998875
No 2
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.94 E-value=4.8e-28 Score=246.30 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=179.1
Q ss_pred eeccCCceeEEEEEC---CEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccC------CCCCChHHHHHHHHhhccc
Q 041399 22 YVATELATDIVFNVG---DVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQ------DIPGGPAAFEICAKFCYGM 91 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~---g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~------d~PGgaeaFelvl~FcYg~ 91 (617)
++.+|.+|||+|.|| |+.|++||.+|+++|+||++||++. .|+...+|+|+ ++ .+++|+.+++|+|||
T Consensus 26 l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v--~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 26 QRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGP--EPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCS--CHHHHHHHHHHHHHS
T ss_pred HHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCC--CHHHHHHHHHhhCcC
Confidence 678899999999998 9999999999999999999999975 67777789998 55 579999999999999
Q ss_pred eEEeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhch---hhhhHHHHH
Q 041399 92 TVTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKV---VSHCLDSIA 168 (617)
Q Consensus 92 ~i~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~I---v~rCidsLA 168 (617)
++.++..||..++.||++|||++ |+..|+.||.+.+ ...||..++.+|+.+++ ...|.+-|+
T Consensus 104 ~~~i~~~~v~~ll~~A~~l~i~~------L~~~c~~~L~~~l---------~~~n~~~i~~~A~~~~~~~L~~~~~~~i~ 168 (279)
T 3i3n_A 104 RIRVSTGSVHEVLELADRFLLIR------LKEFCGEFLKKKL---------HLSNCVAIHSLAHMYTLSQLALKAADMIR 168 (279)
T ss_dssp EEEEETTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC---------CTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHCcHH------HHHHHHHHHHHcC---------CcchHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999999999999999994 8899999999988 46799999999999973 333333332
Q ss_pred HHhccCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHhhcCC--CChhhHHHH
Q 041399 169 TKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHIDLYKRVISTIKTKER--VSADVIGEA 246 (617)
Q Consensus 169 ~kA~~d~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~idl~~rvI~am~s~g~--~~~e~I~~a 246 (617)
.. | ...+-.+++..|+.+.+..+|. +..+ ..++.|.++
T Consensus 169 ~~------------------f-------------------~~v~~~~~f~~L~~~~l~~lL~---~d~L~v~sE~~vf~a 208 (279)
T 3i3n_A 169 RN------------------F-------------------HKVIQDEEFYTLPFHLIRDWLS---DLEITVDSEEVLFET 208 (279)
T ss_dssp HT------------------H-------------------HHHTTSSGGGGSCHHHHHHHHT---CSSCCCSCHHHHHHH
T ss_pred HH------------------H-------------------HHHhcCcChhcCCHHHHHHHhc---CcCCCCCCHHHHHHH
Confidence 21 1 0112236899999999999998 5544 457789999
Q ss_pred HHHHHHhhCCCCCCCcccCCchHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHhhhccCHHHHHHHHHHH
Q 041399 247 LNAYALQRLPGFGKGMIQNGDVTKYRSLVETIMWLLPTEKGSVPCGFLLKLLRAAIMLECGETERTELMRKI 318 (617)
Q Consensus 247 L~~Ya~r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~svsc~FL~~LLR~A~~l~as~~cr~~LEkrI 318 (617)
++.|+++..+.+. .....|++.|+ + +.+|..+|..+++...++..++.|+..|.+-.
T Consensus 209 v~~W~~~~~~~r~---------~~~~~ll~~VR--f----~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~ 265 (279)
T 3i3n_A 209 VLKWVQRNAEERE---------RYFEELFKLLR--L----SQMKPTYLTRHVKPERLVANNEVCVKLVADAV 265 (279)
T ss_dssp HHHHHHTTHHHHT---------TTHHHHHTTSC--G----GGSCHHHHHHTTTTSHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHH---------HHHHHHHHhcC--C----CCCCHHHHHHHhhccchhcCCHHHHHHHHHHH
Confidence 9999987644322 34567888887 5 56899999999999999999999998876543
No 3
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.4e-21 Score=180.20 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=111.8
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeeccc
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
+++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .+....+|.|++++ +++|+.+++|+|++++.++..|
T Consensus 27 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~ 104 (172)
T 3htm_A 27 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 104 (172)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHH
Confidence 46788999999999999999999999999999999999975 66666789999995 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhc
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELK 158 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~ 158 (617)
+..++.+|++|+|++ |...|+.||.+.+ ...||..++.+|+.++
T Consensus 105 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l---------~~~n~~~~~~~A~~~~ 148 (172)
T 3htm_A 105 ADDLLAAADKYALER------LKVMCEDALCSNL---------SVENAAEILILADLHS 148 (172)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHHTC---------CTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcHH------HHHHHHHHHHHhC---------CHHHHHHHHHHHHHhC
Confidence 999999999999995 8899999999988 4679999999999987
No 4
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.82 E-value=6e-21 Score=167.15 Aligned_cols=103 Identities=30% Similarity=0.365 Sum_probs=91.7
Q ss_pred eeccCCceeEEEEECC----EEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEee
Q 041399 22 YVATELATDIVFNVGD----VKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLN 96 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g----~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it 96 (617)
++.++.+|||+|.|+| +.|++||.+|+++|+||++||.+. .|+. .+|.|++++ +++|+.+++|+||+++.++
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~ 78 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLE 78 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCC
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCC
Confidence 5778999999999998 999999999999999999999975 5555 789999995 7999999999999999999
Q ss_pred cccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 97 AYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 97 ~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
.+||..++.+|++++|++ |+..|+.||.+.+
T Consensus 79 ~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l 109 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPA------LAKACVNFLETSL 109 (109)
T ss_dssp TTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence 999999999999999994 8899999998753
No 5
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.82 E-value=1.2e-21 Score=179.09 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=92.0
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeeccc
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .+....+|.|++++ +++|+.+++|+||+++.++..|
T Consensus 18 ~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~ 95 (145)
T 4eoz_A 18 GLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKM 95 (145)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGT
T ss_pred HHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHHH
Confidence 46788999999999999999999999999999999999875 44445689999985 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhch
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELKV 159 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~I 159 (617)
+..++.+|++|+|++ |+..|+.||.+.+ ...||..++.+|+.|++
T Consensus 96 ~~~ll~~A~~~~~~~------l~~~c~~~l~~~l---------~~~n~~~~l~~A~~~~~ 140 (145)
T 4eoz_A 96 ADDLLAAADKYALER------LKVMCEDALCSNL---------SVENAAEILILADLHSA 140 (145)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHCC-------------------------------
T ss_pred HHHHHHHHHHhCHHH------HHHHHHHHHHHhC---------CHHHHHHHHHHHHHhCH
Confidence 999999999999995 7899999999888 56899999999999873
No 6
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.81 E-value=1e-20 Score=168.89 Aligned_cols=101 Identities=24% Similarity=0.231 Sum_probs=91.4
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. .+.....|+|++++ +++|+.+++|+||+++.++.+|+
T Consensus 19 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 19 QRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHH
Confidence 6788999999999999999999999999999999999975 56667789999985 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHhh
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFLN 130 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~ 130 (617)
..++.||++|+|++ |+..|+.||+
T Consensus 97 ~~ll~~A~~~~i~~------L~~~C~~~L~ 120 (120)
T 2if5_A 97 GDILSAARLLEIPA------VSHVCADLLD 120 (120)
T ss_dssp HHHHHHHHHTTCHH------HHHHHHHHHC
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHhC
Confidence 99999999999995 8899999984
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=167.63 Aligned_cols=99 Identities=21% Similarity=0.349 Sum_probs=89.9
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccC--CCCCChHHHHHHHHhhccceEEeeccc
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQ--DIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~--d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ....|.|+ +++ +++|+.+++|+||+++.++..|
T Consensus 16 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~~i~l~~~~~~--~~~f~~ll~~~Yt~~~~~~~~~ 90 (116)
T 2vpk_A 16 QREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST---SENNVFLDQSQVK--ADGFQKLLEFIYTGTLNLDSWN 90 (116)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC---CCSCEECCTTTCC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC---CCCeEEeecCCCC--HHHHHHHHHHHcCCCcccCHHH
Confidence 6788999999999999999999999999999999999876 24467777 884 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhh
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNT 131 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~ 131 (617)
|..++.||++|||++ |+..|+.||.+
T Consensus 91 v~~ll~~A~~~~i~~------L~~~C~~~l~~ 116 (116)
T 2vpk_A 91 VKEIHQAADYLKVEE------VVTKCKIKMED 116 (116)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHhC
Confidence 999999999999984 88999999863
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.81 E-value=1.8e-20 Score=169.09 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=94.3
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCcccc-CCCCCChHHHHHHHHhhccceEEeeccc
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPI-QDIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L-~d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... .| ....|.| ++++ +++|+.+++|+||+++.++..|
T Consensus 23 l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~--~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCC--HHHHHHHHHHHcCCCcCcCHHH
Confidence 6788999999999999999999999999999999999976 44 6678999 8985 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhhc
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~ 132 (617)
|..|+.||++|+|++ |+..|+.||.+.
T Consensus 100 ~~~ll~~A~~~~i~~------L~~~c~~~l~~~ 126 (127)
T 1r29_A 100 IMAVMATAMYLQMEH------VVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHhc
Confidence 999999999999994 889999999753
No 9
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.81 E-value=7.1e-21 Score=170.58 Aligned_cols=100 Identities=19% Similarity=0.127 Sum_probs=90.6
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVV 101 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~ 101 (617)
++.+|.+|||+|.|+|++|++||.+|+++|+||++||.... ..+|.|++++ +++|+.+++|+|||++.++.+||.
T Consensus 18 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~ 92 (119)
T 3b84_A 18 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRD 92 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred HHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHH
Confidence 67889999999999999999999999999999999998753 4579999985 699999999999999999999999
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHhhhc
Q 041399 102 AARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132 (617)
Q Consensus 102 ~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~ 132 (617)
.++.||++|+|++ |++.|+.||.+.
T Consensus 93 ~ll~~A~~~~i~~------L~~~C~~~l~~~ 117 (119)
T 3b84_A 93 QVLLAARELRVPE------AVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHCC---
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHc
Confidence 9999999999995 889999999764
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.80 E-value=1.9e-20 Score=167.99 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=92.1
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVV 101 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~ 101 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ..+|.|++++ +++|+.+++|+||+++.++..|+.
T Consensus 22 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~ 95 (121)
T 1buo_A 22 MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLD 95 (121)
T ss_dssp HHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHH
T ss_pred HHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC----CcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHH
Confidence 6788999999999999999999999999999999999863 4579999995 799999999999999999999999
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHhhhc
Q 041399 102 AARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132 (617)
Q Consensus 102 ~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~ 132 (617)
.++.||++|+|++ |++.|+.||.+.
T Consensus 96 ~ll~~A~~~~i~~------L~~~c~~~l~~~ 120 (121)
T 1buo_A 96 DLLYAAEILEIEY------LEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHHHHTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHH------HHHHHHHHHHHh
Confidence 9999999999994 889999999864
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.80 E-value=9.2e-21 Score=173.79 Aligned_cols=102 Identities=18% Similarity=0.126 Sum_probs=89.6
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVV 101 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~ 101 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.... ..+|.|++++ +++|+.+++|+||+++.++.+||.
T Consensus 19 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~ 93 (135)
T 2yy9_A 19 QREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRD 93 (135)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHH
Confidence 68889999999999999999999999999999999998753 4579999985 799999999999999999999999
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHhhhccc
Q 041399 102 AARCAAEYLEMYETVEKGNLIYKIEVFLNTSIF 134 (617)
Q Consensus 102 ~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~ 134 (617)
.|+.||++|||++ |++.|+.||.+.+.
T Consensus 94 ~ll~~A~~l~i~~------L~~~C~~~l~~~l~ 120 (135)
T 2yy9_A 94 QVLLAAKELRVPE------AVELCQSFQPQTSV 120 (135)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHCCC----
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHhcc
Confidence 9999999999994 88999999988763
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.80 E-value=2.2e-20 Score=167.42 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=89.9
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVV 101 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~ 101 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+. ...|.|++++ +++|+.+++|+||+++.++.+||.
T Consensus 21 l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~i~~~~~~ 94 (119)
T 2q81_A 21 QRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ----KDVVHLDISN--AAGLGQVLEFMYTAKLSLSPENVD 94 (119)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC----CSGGGGGGCC--HHHHHHHHHHHHHSCCCCCTTTHH
T ss_pred HHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHH
Confidence 6778999999999999999999999999999999999863 3478888884 799999999999999999999999
Q ss_pred HHHHhHhhcCcchhhccccHHHHHHHHhh
Q 041399 102 AARCAAEYLEMYETVEKGNLIYKIEVFLN 130 (617)
Q Consensus 102 ~L~cAA~yLqM~e~~~~gNL~~~ce~FL~ 130 (617)
.++.||++|||++ |++.|+.||.
T Consensus 95 ~ll~~A~~l~i~~------L~~~C~~~l~ 117 (119)
T 2q81_A 95 DVLAVATFLQMQD------IITACHALKS 117 (119)
T ss_dssp HHHHHHHHTTCHH------HHHHHHHHHT
T ss_pred HHHHHHHHhCCHH------HHHHHHHHHh
Confidence 9999999999995 8899999986
No 13
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.80 E-value=3.1e-20 Score=170.49 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=95.5
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccC-CCCCChHHHHHHHHhhccceEEeeccc
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQ-DIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~-d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||...... ...|.|+ +++ +++|+.+++|+||+++.++..|
T Consensus 29 ~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 29 DQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA-ELTVTLPEEVT--VKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT-TEEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC-CceEEeCCCCC--HHHHHHHHHHhcCCCcccCHHH
Confidence 36788999999999999999999999999999999999875322 3478884 784 7999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCc
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRS 136 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~s 136 (617)
|..|+.||++|||++ |+..|+.||.+.+..+
T Consensus 106 v~~ll~~A~~~~i~~------L~~~C~~~l~~~l~~s 136 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHN------IEESCFQFLKFKFLDS 136 (138)
T ss_dssp HHHHHHHHHHHTCGG------GHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHHhcccc
Confidence 999999999999994 8899999999988644
No 14
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.7e-20 Score=170.14 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=85.2
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccC-CCCCChHHHHHHHHhhccceEEeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQ-DIPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~-d~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ...+|+|+ +++ +++|+.+++|+||+++.++.+||
T Consensus 27 l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~ 101 (129)
T 3ga1_A 27 QRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQ 101 (129)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTH
T ss_pred HHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHH
Confidence 6778999999999999999999999999999999999876 45689996 885 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHhhhc
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFLNTS 132 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~ 132 (617)
..++.||++|||++ |++.|+.||.+.
T Consensus 102 ~~ll~~A~~~~i~~------l~~~C~~~L~~~ 127 (129)
T 3ga1_A 102 DLLMYTAGFLQIQE------IMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHTTBTT------SSCC--------
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHHHh
Confidence 99999999999995 677999999864
No 15
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.79 E-value=1.6e-20 Score=168.99 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=89.0
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCC-CCCChHHHHHHHHhhccceEEeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQD-IPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d-~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||...... ...|.|++ ++ +++|+.+++|+||+++.++.+||
T Consensus 26 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-~~~i~l~~~~~--~~~f~~~l~~iYtg~~~~~~~~v 102 (125)
T 3ohu_A 26 QRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVT--ARGFGPLLQFAYTAKLLLSRENI 102 (125)
T ss_dssp HHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-SCEEECCTTCC--HHHHHHHHHHHTTSEEEECTTTH
T ss_pred HHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-CcEEEeCCCCC--HHHHHHHHHhHcCCceEECHHHH
Confidence 6788999999999999999999999999999999999876322 56788987 84 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHh
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFL 129 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL 129 (617)
..++.||++|||++ |++.|+.||
T Consensus 103 ~~ll~~A~~l~i~~------L~~~C~~~L 125 (125)
T 3ohu_A 103 REVIRCAEFLRMHN------LEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHTBSS------CTTSSCCCC
T ss_pred HHHHHHHHHhCCHH------HHHHHHHhC
Confidence 99999999999995 666777765
No 16
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.79 E-value=4e-20 Score=171.68 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=89.2
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-C--CCCCCccccCCCCCChHHHHHHHHhhccceEEeecc
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-N--DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAY 98 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~--e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~ 98 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... . +....+|.|++++ +++|+.+++|+||+++.++..
T Consensus 41 l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 41 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp TTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTT
T ss_pred HHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHH
Confidence 6788999999999999999999999999999999999864 3 3456789999995 799999999999999999999
Q ss_pred cHHHHHHhHhhcCcchhhccccHHHHHHHHhh
Q 041399 99 NVVAARCAAEYLEMYETVEKGNLIYKIEVFLN 130 (617)
Q Consensus 99 NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~ 130 (617)
||..|+.||++|+|++ |+..|+.||.
T Consensus 119 ~v~~ll~~A~~l~i~~------L~~~C~~~L~ 144 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTD------LKTLCCEFLE 144 (144)
T ss_dssp THHHHHHHHHHTTCHH------HHHHHHTTC-
T ss_pred HHHHHHHHHHHhCcHH------HHHHHHHHhC
Confidence 9999999999999995 7899999974
No 17
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.79 E-value=5.6e-20 Score=165.92 Aligned_cols=93 Identities=22% Similarity=0.201 Sum_probs=84.4
Q ss_pred eccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccHHH
Q 041399 23 VATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNVVA 102 (617)
Q Consensus 23 ~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV~~ 102 (617)
+.+|.+|||+|.|+|+.|++||.+|+++|+||++ ....|+|++++ +++|+.+++|+|||++.|+.+||..
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~--------~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR--------RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC--------CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc--------CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 5679999999999999999999999999999984 23578999995 7999999999999999999999999
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHhhh
Q 041399 103 ARCAAEYLEMYETVEKGNLIYKIEVFLNT 131 (617)
Q Consensus 103 L~cAA~yLqM~e~~~~gNL~~~ce~FL~~ 131 (617)
++.||++|||++ |++.|+.++.+
T Consensus 95 ll~aA~~l~i~~------l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQS------LEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHC--
T ss_pred HHHHHHHhCCHH------HHHHHHHHHhh
Confidence 999999999994 78999999875
No 18
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.78 E-value=4.3e-20 Score=166.59 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=88.5
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCcccc-CCCCCChHHHHHHHHhhccceEEeeccc
Q 041399 21 RYVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPI-QDIPGGPAAFEICAKFCYGMTVTLNAYN 99 (617)
Q Consensus 21 ~~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L-~d~PGgaeaFelvl~FcYg~~i~it~~N 99 (617)
.++.++.+|||+|.|+|+.|++||.+|+++|+||++||.+.... ...|.| .++ .+++|+.+++|+||+++.++.+|
T Consensus 22 ~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e-~~~i~l~~~v--~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 22 DQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG-ELNITLPEEV--TVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC----CEEEECCTTS--CHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC-CceEeecCCc--CHHHHHHHHHHhcCCCcccCHHH
Confidence 36788999999999999999999999999999999999875321 246888 478 47999999999999999999999
Q ss_pred HHHHHHhHhhcCcchhhccccHHHHHHHHhh
Q 041399 100 VVAARCAAEYLEMYETVEKGNLIYKIEVFLN 130 (617)
Q Consensus 100 V~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~ 130 (617)
|..++.||++|||++ |++.|+.||.
T Consensus 99 v~~ll~~A~~~~~~~------L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHN------IEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSS------CCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHH------HHHHHHHHHh
Confidence 999999999999995 6778998875
No 19
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.76 E-value=4.7e-19 Score=182.38 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=114.0
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-CCCCCCccccCCCCCChHHHHHHHHhhccceEEeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~~NV 100 (617)
++.++.+|||+|.|+|++|++||.+||++|+||++||... .|....+|+|++++ +++|+.+++|+||+.+.++..|+
T Consensus 168 l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 168 LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHH
Confidence 4567899999999999999999999999999999999875 66677899999995 79999999999999999999999
Q ss_pred HHHHHhHhhcCcchhhccccHHHHHHHHhhhcccCcchhHHHHHhhhhhHHHHhHHhc---hhhhhHHHHHH
Q 041399 101 VAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIFRSWKDSIIVLQTTRSLLPWSEELK---VVSHCLDSIAT 169 (617)
Q Consensus 101 ~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~~sw~dsi~~L~~C~~l~~~Ae~~~---Iv~rCidsLA~ 169 (617)
..|+.||++++|+ .|+..|+.||.+.+ ...||..++.+|+.++ |..+|++-|+.
T Consensus 246 ~~ll~~A~~~~~~------~l~~~c~~~l~~~~---------~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 302 (312)
T 3hqi_A 246 DDLLAAADKYALE------RLKVMCEDALCSNL---------SVENAAEILILADLHSADQLKTQAVDFINY 302 (312)
T ss_dssp HHHHHHHHHTTCH------HHHHHHHHHHHTTC---------CTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHH------HHHHHHHHHHHccC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999 48899999999887 4679999999999984 55566665544
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.71 E-value=3.1e-18 Score=153.27 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=81.5
Q ss_pred eeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccceE-EeecccH
Q 041399 22 YVATELATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMTV-TLNAYNV 100 (617)
Q Consensus 22 ~~~~~~~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i-~it~~NV 100 (617)
++.++.+|||+|.|+|+.|++||.+|+++|+||++||... ..+|+|++++ +++|+.+++|+|||++ .++..||
T Consensus 25 ~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~ 98 (116)
T 3fkc_A 25 QRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLL 98 (116)
T ss_dssp HHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHH
Confidence 6788999999999999999999999999999999999865 4589999995 7999999999999999 7999999
Q ss_pred HHHHHhHhhcCcch
Q 041399 101 VAARCAAEYLEMYE 114 (617)
Q Consensus 101 ~~L~cAA~yLqM~e 114 (617)
..++.||++|||+.
T Consensus 99 ~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 99 DELIKSGQLLGVKF 112 (116)
T ss_dssp HHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCccc
Confidence 99999999999985
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.32 E-value=6.2e-13 Score=125.81 Aligned_cols=95 Identities=14% Similarity=0.237 Sum_probs=81.5
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcC-C-C-CCCCCccccCCCCCChHHHHHHHHhhccce--------------
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAA-T-N-DDNSDEMPIQDIPGGPAAFEICAKFCYGMT-------------- 92 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~-~-~-e~~~~~V~L~d~PGgaeaFelvl~FcYg~~-------------- 92 (617)
|+|.. +|+.|.+|+.+ |++|+||+.||.. + . +.....|.|++|+ +.+++.|++|||...
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 79999999998 8999999999987 3 3 4555689999996 599999999999887
Q ss_pred ------------EEeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhccc
Q 041399 93 ------------VTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIF 134 (617)
Q Consensus 93 ------------i~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~ 134 (617)
+.++..|+..|+.||.||+|. .|++.|+.|+...+.
T Consensus 80 ~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~------~Lld~~c~~va~~i~ 127 (159)
T 2ast_A 80 RTDDIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMIK 127 (159)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHS
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHc
Confidence 789999999999999999999 489999999998884
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.13 E-value=3.6e-11 Score=104.84 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=65.4
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCC---CCCCCCccccCCCCCChHHHHHHHHhhc-----c---ceEE---e
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAAT---NDDNSDEMPIQDIPGGPAAFEICAKFCY-----G---MTVT---L 95 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~---~e~~~~~V~L~d~PGgaeaFelvl~FcY-----g---~~i~---i 95 (617)
|+|+- +|+.|.+||.+ |++|+||++||... .|.....|.|++++ +.+++.+++||| + +.|. |
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 45554 68999999999 99999999999862 44556789999996 599999999999 5 6777 9
Q ss_pred ecccHHHHHHhHhhcCc
Q 041399 96 NAYNVVAARCAAEYLEM 112 (617)
Q Consensus 96 t~~NV~~L~cAA~yLqM 112 (617)
+++|+..|+.||+||+.
T Consensus 81 ~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 APEIALELLMAANFLDC 97 (97)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhhhCC
Confidence 99999999999999983
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.99 E-value=2.8e-10 Score=105.73 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=80.8
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccce-----------------
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMT----------------- 92 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~----------------- 92 (617)
|+|+. +|+.|.+|+.+ |..|+||+.||.... ...|.|++|+ +.+++.|++|||...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 77 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG---MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 77 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC---CSSEECTTCC--HHHHHHHHHHHHHHTTCC--------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC---CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchh
Confidence 67776 68999999998 899999999998642 3479999996 599999999999764
Q ss_pred ---------EEeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhccc
Q 041399 93 ---------VTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIF 134 (617)
Q Consensus 93 ---------i~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~ 134 (617)
+.++..++..|+.||.||+|. .|++.|+.|+...+-
T Consensus 78 ~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 78 DIPVWDQEFLKVDQGTLFELILAANYLDIK------GLLDVTCKTVANMIK 122 (141)
T ss_dssp ---HHHHHHTCSCHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHc
Confidence 678999999999999999999 589999999998873
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.85 E-value=3.7e-10 Score=107.09 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=51.1
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccce-----------------
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMT----------------- 92 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~----------------- 92 (617)
|+|+. +|+.|.+|+.+ |..|+||+.||.... ....|.|++|+ +.+++.|++|||...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~ 80 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC--VDNGVPLPNVT--SKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC--------------CCTTSC--HHHHHHHHHC----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC--CCCceeCCcCc--HHHHHHHHHHHHHcccCCCccccccccccccc
Confidence 66664 79999999998 899999999998642 23479999996 499999999999875
Q ss_pred ----------EEeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhccc
Q 041399 93 ----------VTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSIF 134 (617)
Q Consensus 93 ----------i~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v~ 134 (617)
+.++..++..|+.||.||+|. .|++.|+.|+...+-
T Consensus 81 ~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~------~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 81 DDLKAWDADFMKIDQATLFELILAANYLNIK------NLLDLTCQTVADMIK 126 (160)
T ss_dssp --------------------CHHHHHHTTCH------HHHHHHHHHHHHTTT
T ss_pred chhhHHHHHHHcCCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHc
Confidence 578999999999999999999 589999999999884
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.27 E-value=6.4e-07 Score=78.48 Aligned_cols=79 Identities=10% Similarity=0.184 Sum_probs=66.1
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCCCCCCCccccCCCCCChHHHHHHHHhhccce--------------EEe
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAATNDDNSDEMPIQDIPGGPAAFEICAKFCYGMT--------------VTL 95 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~--------------i~i 95 (617)
|+|.- +|+.|.+|+.+ |..|++|+.|+..+-+.....|.|++++ +.+++.|++|||... ..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v 82 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI 82 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence 67766 79999999996 8999999999987433344689999996 599999999999642 367
Q ss_pred ecccHHHHHHhHhhcCc
Q 041399 96 NAYNVVAARCAAEYLEM 112 (617)
Q Consensus 96 t~~NV~~L~cAA~yLqM 112 (617)
...++..|+.||.||++
T Consensus 83 d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 83 PTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88899999999999985
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.22 E-value=7.2e-07 Score=77.67 Aligned_cols=79 Identities=10% Similarity=0.224 Sum_probs=63.9
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCC---CCCCCCccccCCCCCChHHHHHHHHhhccce-----------EEe
Q 041399 31 IVFNV-GDVKFYLHKFPLLSKSARLQKLVAAT---NDDNSDEMPIQDIPGGPAAFEICAKFCYGMT-----------VTL 95 (617)
Q Consensus 31 V~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~---~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~-----------i~i 95 (617)
|+|.- +|+.|.+|+.+ |..|++|+.|+... .|.....|.|++++ +.+++.|++|||.-. ..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~v 79 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 79 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCccc
Confidence 56665 79999999996 89999999999863 24444689999996 599999999999642 368
Q ss_pred ecccHHHHHHhHhhcCc
Q 041399 96 NAYNVVAARCAAEYLEM 112 (617)
Q Consensus 96 t~~NV~~L~cAA~yLqM 112 (617)
....+..|+.||.||++
T Consensus 80 d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 80 APEIALELLMAANFLDC 96 (96)
T ss_dssp CTTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999985
No 27
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.13 E-value=1.6e-06 Score=82.99 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=75.6
Q ss_pred eEEEEE-CCEEEEecCcccccCCHHHHHhhcCCCC-----CCCCccccCCCCCChHHHHHHHHhhccce-----------
Q 041399 30 DIVFNV-GDVKFYLHKFPLLSKSARLQKLVAATND-----DNSDEMPIQDIPGGPAAFEICAKFCYGMT----------- 92 (617)
Q Consensus 30 DV~I~V-~g~~F~lHK~vLas~S~yfr~Lf~~~~e-----~~~~~V~L~d~PGgaeaFelvl~FcYg~~----------- 92 (617)
-|+|+- +|+.|.+++.+ |..|++++.|+..... .....|.|++|+ +.+++.|+.|||-..
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCccccccc
Confidence 466665 58999999997 7889999999986421 223579999996 499999999998532
Q ss_pred --------------EEeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 93 --------------VTLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 93 --------------i~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
+.+....+..|+.||.||+|. .|++.|+.++...+
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk------~Lldl~c~~vA~~i 133 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIK------PLLDAGCKVVAEMI 133 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHH
Confidence 356778899999999999999 58899999998766
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.56 E-value=3.2e-05 Score=69.29 Aligned_cols=79 Identities=10% Similarity=0.221 Sum_probs=62.7
Q ss_pred EEEE-ECCEEEEecCcccccCCHHHHHhhcCC---CCCCCCccccCCCCCChHHHHHHHHhhccce-----------EEe
Q 041399 31 IVFN-VGDVKFYLHKFPLLSKSARLQKLVAAT---NDDNSDEMPIQDIPGGPAAFEICAKFCYGMT-----------VTL 95 (617)
Q Consensus 31 V~I~-V~g~~F~lHK~vLas~S~yfr~Lf~~~---~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~-----------i~i 95 (617)
|+|+ -+|+.|.+++. .|..|+.++.|+... .+.....|.|++|+ +.+++.|++|||-.. ..+
T Consensus 19 v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~i~~w~v 95 (112)
T 1vcb_B 19 VKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPI 95 (112)
T ss_dssp EEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHSSCSSCCCCCCC
T ss_pred EEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCC--HHHHHHHHHHHHHhhhccCCcCCCCCccc
Confidence 5666 47999999999 578999999999863 23334579999996 599999999998532 367
Q ss_pred ecccHHHHHHhHhhcCc
Q 041399 96 NAYNVVAARCAAEYLEM 112 (617)
Q Consensus 96 t~~NV~~L~cAA~yLqM 112 (617)
...++..|+.||.||++
T Consensus 96 d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 96 APEIALELLMAANFLDC 112 (112)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 88999999999999985
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.26 E-value=0.00053 Score=60.49 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=69.7
Q ss_pred eEEEEECCEEEEecCcccccCC-HHHHHhhcCCCC-----CCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHHH
Q 041399 30 DIVFNVGDVKFYLHKFPLLSKS-ARLQKLVAATND-----DNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVVA 102 (617)
Q Consensus 30 DV~I~V~g~~F~lHK~vLas~S-~yfr~Lf~~~~e-----~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~~ 102 (617)
=|+|.|||+.|...+..|.... .+|.+||....+ ....++-| |- .|+.|+.|++|..+|++.+.. -.+..
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DR--dp~~F~~IL~~lr~g~l~~p~~~~~~~ 83 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 83 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CS--CHHHHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cC--ChHHHHHHHHHhCCCeeCCCCCCCHHH
Confidence 3688999999999999999875 578999875311 12234444 33 579999999999999988743 34567
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHhh
Q 041399 103 ARCAAEYLEMYETVEKGNLIYKIEVFLN 130 (617)
Q Consensus 103 L~cAA~yLqM~e~~~~gNL~~~ce~FL~ 130 (617)
++..|+|.++++ |++.|++-+.
T Consensus 84 l~~Ea~fy~l~~------L~~~l~~~i~ 105 (107)
T 3drz_A 84 VLEEAEFYNITS------LIKLVKDKIR 105 (107)
T ss_dssp HHHHHHHHTCHH------HHHHHHHHHH
T ss_pred HHHHHHHCCCHH------HHHHHHHHHh
Confidence 999999999995 6777776544
No 30
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.68 E-value=0.00019 Score=62.79 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=64.1
Q ss_pred HHhhhhhHHHHhHHhchhhhhHHHHHHHhccCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCH
Q 041399 143 VLQTTRSLLPWSEELKVVSHCLDSIATKASIDTSKVEWSYTYNRRKLPSENGNDPHWNGMRKPQSVPKDWWVEDLCELHI 222 (617)
Q Consensus 143 ~L~~C~~l~~~Ae~~~Iv~rCidsLA~kA~~d~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~EDL~~L~i 222 (617)
.+.||.+++.+|+.|+ | ..|..+| +.|. .++| ......+||..|+.
T Consensus 9 ~~~NCl~i~~~A~~~~----~-~~L~~~a--------~~fi--~~nF-------------------~~v~~~~eFl~L~~ 54 (105)
T 2eqx_A 9 QVGNCLQVMWLADRHS----D-PELYTAA--------KHCA--KTHL-------------------AQLQNTEEFLHLPH 54 (105)
T ss_dssp CTTTHHHHHHHHHHTT----C-HHHHHHH--------HHHH--HHTC-------------------HHHHTSHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcC----C-HHHHHHH--------HHHH--HHHH-------------------HHHHhcccHhhCCH
Confidence 4679999999999998 4 5666665 3333 2233 11223579999999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHhhCCCCCCCcccCCchHHHHHHHHHHH
Q 041399 223 DLYKRVISTIKTKERVSADVIGEALNAYALQRLPGFGKGMIQNGDVTKYRSLVETIM 279 (617)
Q Consensus 223 dl~~rvI~am~s~g~~~~e~I~~aL~~Ya~r~L~~~~~~~~~~~~~~~~r~LLEtIv 279 (617)
+.+..+|.. . +.+++.|+++++.|+++....+. .+...||+.|+
T Consensus 55 ~~L~~lL~s---d-v~~E~~vf~av~~Wv~~d~~~R~---------~~~~~Ll~~VR 98 (105)
T 2eqx_A 55 RLLTDIISD---G-VPCSQNPTEAIEAWINFNKEERE---------AFAESLRTSLK 98 (105)
T ss_dssp HHHHHHHHT---C-EETTSCHHHHHHHHHHTTHHHHH---------HHHHHHHHHCC
T ss_pred HHHHHHHcC---C-CCCHHHHHHHHHHHHHcCHHHHH---------HHHHHHHHHHH
Confidence 999999994 4 66678899999999987654322 45567777765
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.36 E-value=0.029 Score=55.09 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=69.2
Q ss_pred eEEEEECCEEEEecCcccccCC-HHHHHhhcCCCC-----CCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHHH
Q 041399 30 DIVFNVGDVKFYLHKFPLLSKS-ARLQKLVAATND-----DNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVVA 102 (617)
Q Consensus 30 DV~I~V~g~~F~lHK~vLas~S-~yfr~Lf~~~~e-----~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~~ 102 (617)
=|+|.|||..|...+..|...- .+|.+||....+ ....++-| |- .|..|+.|++|.-+|++.+.. -.+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DR--DP~~F~~ILnyLRtG~L~lP~~~~~~~ 89 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DR--DPTYFGPVLNYLRHGKLVINKDLAEEG 89 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CS--CSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cC--ChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence 3678999999999999998765 488999875311 11234444 33 459999999999999998743 34467
Q ss_pred HHHhHhhcCcchhhccccHHHHHHHHhhh
Q 041399 103 ARCAAEYLEMYETVEKGNLIYKIEVFLNT 131 (617)
Q Consensus 103 L~cAA~yLqM~e~~~~gNL~~~ce~FL~~ 131 (617)
++.-|+|+++.+ |+..|+.-+.+
T Consensus 90 l~eEA~FygL~~------Lv~~l~~~i~e 112 (202)
T 3drx_A 90 VLEEAEFYNITS------LIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHHTTCHH------HHHHHHHHHHH
T ss_pred HHHHHHHCCcHH------HHHHHHHHHHH
Confidence 999999999985 67777776653
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=92.91 E-value=0.047 Score=48.86 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred EEEEECCEEEEecCcccccCCH-HHHHhhcCCC--CCCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHHHHHHh
Q 041399 31 IVFNVGDVKFYLHKFPLLSKSA-RLQKLVAATN--DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVVAARCA 106 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S~-yfr~Lf~~~~--e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~~L~cA 106 (617)
|+|.|||+.|...+..|...-+ +|.+||.... .....++-|. = .|..|+.|++|.-+|++.+.. ..+..++.-
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD-R--dp~~F~~ILnylR~G~l~~p~~~~~~~~~~E 83 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD-R--HPGVFAQIINYYRSGKLHYPTDVCGPLFEEE 83 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC-S--CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe-c--ChHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 7899999999999998887633 4556665421 1123345443 2 459999999999999987754 357789999
Q ss_pred HhhcCcchh
Q 041399 107 AEYLEMYET 115 (617)
Q Consensus 107 A~yLqM~e~ 115 (617)
|+|.++++.
T Consensus 84 a~fy~i~~~ 92 (115)
T 3kvt_A 84 LEFWGLDSN 92 (115)
T ss_dssp HHHHTCCGG
T ss_pred HHHhCCChH
Confidence 999999974
No 33
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=91.39 E-value=0.11 Score=47.18 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=56.2
Q ss_pred eEEEEECCEEEEecCcccccCCHHHHHhhcCC-----CCCCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHHHH
Q 041399 30 DIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-----NDDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVVAA 103 (617)
Q Consensus 30 DV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-----~e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~~L 103 (617)
=|+|.|||+.|..-+..|...-+- |+... ......++-| +-.|+.|+.|++|.-+|++.+.. ..+..+
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~S---~L~~~~~~~~~~~~~g~~Fi---DRdp~~F~~ILnflR~G~l~~p~~~~~~~l 87 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFF---DRDPEVFRCVLNFYRTGKLHYPRYECISAY 87 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTS---STTSSGGGGTBCSSSCSEEE---CSCHHHHHHHHHHHHHSCBCCCTTSCHHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCCc---eecccCCcccccCCCCcEEE---cCChHHHHHHHHHHhcCCCCCCCCcCHHHH
Confidence 378899999999988877654321 22221 0112234444 23579999999999999987643 357889
Q ss_pred HHhHhhcCcchh
Q 041399 104 RCAAEYLEMYET 115 (617)
Q Consensus 104 ~cAA~yLqM~e~ 115 (617)
+.-|+|.++.+.
T Consensus 88 ~~Ea~fy~i~~l 99 (124)
T 1s1g_A 88 DDELAFYGILPE 99 (124)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHcCCChH
Confidence 999999999974
No 34
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=90.20 E-value=0.16 Score=44.40 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=57.2
Q ss_pred EEEEECCEEEEecCcccccCC-HHHHHhhcCC--CCCCCCccccCCCCCChHHHHHHHHhhcc-ceEEeec-ccHHHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKS-ARLQKLVAAT--NDDNSDEMPIQDIPGGPAAFEICAKFCYG-MTVTLNA-YNVVAARC 105 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S-~yfr~Lf~~~--~e~~~~~V~L~d~PGgaeaFelvl~FcYg-~~i~it~-~NV~~L~c 105 (617)
|+|.|||+.|...+..|...- ..|.+|+... -.....++-|. = .|..|+.|++|.-+ |++.+.. ..+..++.
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD-R--dp~~F~~ILnflR~~G~l~~p~~~~~~~~~~ 79 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD-R--NRPSFDAILYFYQSGGRLRRPVNVPLDVFSE 79 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC-S--CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc-C--ChHHHHHHHHHHhcCCcccCCCCCCHHHHHH
Confidence 789999999999998886542 1334444321 11123345553 2 45899999999997 8887643 35678999
Q ss_pred hHhhcCcchh
Q 041399 106 AAEYLEMYET 115 (617)
Q Consensus 106 AA~yLqM~e~ 115 (617)
-|+|.++.+.
T Consensus 80 Ea~fy~i~~~ 89 (100)
T 1t1d_A 80 EIKFYELGEN 89 (100)
T ss_dssp HHHHTTCCHH
T ss_pred HHHHcCCCHH
Confidence 9999999974
No 35
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=88.83 E-value=0.17 Score=46.79 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=57.2
Q ss_pred ceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-C----CCCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHH
Q 041399 28 ATDIVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-N----DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVV 101 (617)
Q Consensus 28 ~cDV~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~----e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~ 101 (617)
..=|+|.|||+.|...+..|...-+- |+... + .....++-|. -.+..|+.|++|.-+|++.+.. ..+.
T Consensus 34 ~~~V~LNVGG~~F~T~~~TL~~~P~S---~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~~p~~~~~~ 107 (140)
T 2nz0_B 34 DELIVLNVSGRRFQTWRTTLERYPDT---LLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLHYPRYECIS 107 (140)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTCTTS---TTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBCCCTTSCHH
T ss_pred CCEEEEEECCEEEEeeHHHHhcCCCe---eecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcCCCCCcCHH
Confidence 34578899999999988877654221 22221 0 1122344442 3579999999999999987643 3478
Q ss_pred HHHHhHhhcCcchh
Q 041399 102 AARCAAEYLEMYET 115 (617)
Q Consensus 102 ~L~cAA~yLqM~e~ 115 (617)
.++.-|+|.++++.
T Consensus 108 ~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 108 AYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHHHHcCCChH
Confidence 89999999999974
No 36
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=86.55 E-value=0.13 Score=45.12 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=55.2
Q ss_pred EEEEECCEEEEecCcccccCCHHHHHhhcCC-C----CCCCCccccCCCCCChHHHHHHHHhhccceEEeec-ccHHHHH
Q 041399 31 IVFNVGDVKFYLHKFPLLSKSARLQKLVAAT-N----DDNSDEMPIQDIPGGPAAFEICAKFCYGMTVTLNA-YNVVAAR 104 (617)
Q Consensus 31 V~I~V~g~~F~lHK~vLas~S~yfr~Lf~~~-~----e~~~~~V~L~d~PGgaeaFelvl~FcYg~~i~it~-~NV~~L~ 104 (617)
|+|.|||+.|...+..|...-+- |+... + .....++-|. -.|+.|+.|++|.-+|++.+.+ ..+..++
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~s---~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~ 75 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPDT---LLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLHYPRHECISAYD 75 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSS---STTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCCc---cccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 78999999999988877654321 22221 0 0112234442 2469999999999999987643 3578899
Q ss_pred HhHhhcCcchh
Q 041399 105 CAAEYLEMYET 115 (617)
Q Consensus 105 cAA~yLqM~e~ 115 (617)
.-|+|.++++.
T Consensus 76 ~Ea~fy~i~~l 86 (105)
T 1nn7_A 76 EELAFFGLIPE 86 (105)
T ss_dssp HHHHHHTCCSC
T ss_pred HHHHHcCCCHH
Confidence 99999999974
No 37
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=68.30 E-value=1.4 Score=29.35 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=14.6
Q ss_pred ccHHHHHHhHhhcCcch
Q 041399 98 YNVVAARCAAEYLEMYE 114 (617)
Q Consensus 98 ~NV~~L~cAA~yLqM~e 114 (617)
.||+.|+.||+||+=-|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 59999999999998544
No 38
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=45.48 E-value=16 Score=32.24 Aligned_cols=31 Identities=3% Similarity=0.018 Sum_probs=25.1
Q ss_pred cCCCCCChHHHHHHHHhhcCCccccchhHHHHHHHHHhhCCC
Q 041399 389 AKDPNLPLAKFVNLAEIVSIFPRQSHDGLYRAIDMYLKEHPG 430 (617)
Q Consensus 389 A~D~nL~~skF~~LAe~lP~~aR~~hDgLYrAIDiYLK~Hp~ 430 (617)
..|.+.++.++.+.+ .++++|||-||-+||.
T Consensus 92 ~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 92 VHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp SSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 677888998887664 7889999999999994
No 39
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=42.95 E-value=11 Score=41.42 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=55.2
Q ss_pred eEEEEECCEEEEecCcccccCCH-HHHHhhcCC--CCCCCCccccCCCCCChHHHHHHHHhhcc-ceEEeec-ccHHHHH
Q 041399 30 DIVFNVGDVKFYLHKFPLLSKSA-RLQKLVAAT--NDDNSDEMPIQDIPGGPAAFEICAKFCYG-MTVTLNA-YNVVAAR 104 (617)
Q Consensus 30 DV~I~V~g~~F~lHK~vLas~S~-yfr~Lf~~~--~e~~~~~V~L~d~PGgaeaFelvl~FcYg-~~i~it~-~NV~~L~ 104 (617)
=|+|.|||..|...+.-|...-+ .+-+++... -+....++-+ +-.|+.|+.+++|..+ |++.+.. -.+..++
T Consensus 53 ~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~---DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~ 129 (514)
T 2r9r_B 53 RVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF---DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFS 129 (514)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE---CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHH
T ss_pred EEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE---cCChHHHHHHHHHHhcCCccccCCcccHHHHH
Confidence 46789999999998887754321 111222211 1112234544 2357999999999999 9987643 3456689
Q ss_pred HhHhhcCcchh
Q 041399 105 CAAEYLEMYET 115 (617)
Q Consensus 105 cAA~yLqM~e~ 115 (617)
.-|+|.++.+.
T Consensus 130 ~E~~f~~i~~~ 140 (514)
T 2r9r_B 130 EEIRFYELGEE 140 (514)
T ss_dssp HHHHHTTCCHH
T ss_pred HHHHhcCCCHH
Confidence 99999999985
No 40
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=61 Score=27.47 Aligned_cols=34 Identities=15% Similarity=0.017 Sum_probs=30.3
Q ss_pred EeecccHHHHHHhHhhcCcchhhccccHHHHHHHHhhhcc
Q 041399 94 TLNAYNVVAARCAAEYLEMYETVEKGNLIYKIEVFLNTSI 133 (617)
Q Consensus 94 ~it~~NV~~L~cAA~yLqM~e~~~~gNL~~~ce~FL~~~v 133 (617)
.|+++|...++..|+.++.++ |..+|..|+....
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~------L~~~a~~fi~~nF 40 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPE------LYTAAKHCAKTHL 40 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHH
Confidence 578999999999999999884 7889999998776
Done!