Query 041400
Match_columns 95
No_of_seqs 104 out of 209
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 06:42:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 9.2E-38 2E-42 201.2 5.1 60 36-95 1-60 (60)
2 PF07172 GRP: Glycine rich pro 95.0 0.033 7.1E-07 38.2 3.4 20 1-20 1-20 (95)
3 PF10731 Anophelin: Thrombin i 84.2 1.5 3.2E-05 29.0 3.2 25 1-27 1-25 (65)
4 PF07127 Nodulin_late: Late no 83.3 1.1 2.4E-05 27.3 2.2 39 1-40 1-39 (54)
5 PF10717 ODV-E18: Occlusion-de 74.7 4 8.7E-05 28.2 3.0 24 6-29 29-52 (85)
6 PF09257 BCMA-Tall_bind: BCMA, 65.7 5.7 0.00012 23.9 2.0 21 40-60 16-36 (39)
7 PLN03207 stomagen; Provisional 56.7 20 0.00044 25.9 3.8 6 41-46 84-89 (113)
8 COG2991 Uncharacterized protei 56.3 13 0.00029 25.3 2.7 17 7-23 4-20 (77)
9 PHA02637 TNF-alpha-receptor-li 49.8 16 0.00036 26.7 2.5 26 59-87 41-74 (127)
10 PF10690 Myticin-prepro: Mytic 48.4 9.4 0.0002 27.0 1.0 14 35-48 23-37 (98)
11 PF11912 DUF3430: Protein of u 45.3 17 0.00037 26.1 2.0 10 5-14 1-10 (212)
12 PF12438 DUF3679: Protein of u 41.0 39 0.00085 21.6 2.9 19 8-26 4-22 (56)
13 PF07699 GCC2_GCC3: GCC2 and G 38.9 39 0.00085 19.5 2.6 28 64-91 10-41 (48)
14 PF08027 Albumin_I: Albumin I; 38.6 7.5 0.00016 28.4 -0.7 12 63-74 37-48 (120)
15 PF03058 Sar8_2: Sar8.2 family 38.3 48 0.001 23.3 3.3 13 1-13 1-13 (93)
16 PF13956 Ibs_toxin: Toxin Ibs, 37.6 11 0.00025 19.5 0.1 9 6-14 3-11 (19)
17 PF15240 Pro-rich: Proline-ric 35.8 24 0.00051 27.2 1.6 15 8-22 3-17 (179)
18 PRK09039 hypothetical protein; 31.5 61 0.0013 26.3 3.4 15 5-20 24-38 (343)
19 PF10868 DUF2667: Protein of u 30.4 22 0.00048 24.6 0.6 21 66-86 62-82 (90)
20 PF01826 TIL: Trypsin Inhibito 29.4 2.7 5.9E-05 24.8 -3.6 42 34-79 7-49 (55)
21 PLN02995 Probable pectinestera 28.3 1.4E+02 0.003 26.2 5.1 16 41-56 37-52 (539)
22 PRK00442 tatA twin arginine tr 27.2 60 0.0013 22.5 2.3 12 9-20 10-21 (92)
23 PF09919 DUF2149: Uncharacteri 27.0 1.1E+02 0.0023 20.9 3.5 8 1-8 1-8 (92)
24 KOG4742 Predicted chitinase [G 26.6 70 0.0015 26.3 2.9 9 54-62 37-45 (286)
25 PF12729 4HB_MCP_1: Four helix 26.4 1.2E+02 0.0026 19.6 3.6 10 6-15 7-16 (181)
26 PRK04598 tatA twin arginine tr 25.8 58 0.0013 22.1 2.0 12 9-20 10-21 (81)
27 PLN03161 Probable xyloglucan e 25.7 55 0.0012 26.6 2.2 14 1-14 1-14 (291)
28 PF05887 Trypan_PARP: Procycli 25.5 23 0.0005 26.6 0.0 21 1-21 1-21 (143)
29 PRK03554 tatA twin arginine tr 25.1 60 0.0013 22.6 2.0 13 8-20 9-21 (89)
30 PRK12750 cpxP periplasmic repr 25.0 1.1E+02 0.0023 22.7 3.4 18 1-18 1-18 (170)
31 TIGR01614 PME_inhib pectineste 24.7 42 0.0009 23.4 1.2 18 40-57 31-48 (178)
32 PF00879 Defensin_propep: Defe 24.2 83 0.0018 19.8 2.3 16 6-21 2-17 (52)
33 MTH00260 ATP8 ATP synthase F0 23.7 1.2E+02 0.0027 18.6 3.0 15 1-15 4-18 (53)
34 PF02533 PsbK: Photosystem II 23.7 85 0.0019 19.2 2.2 12 13-24 27-38 (42)
35 PF15284 PAGK: Phage-encoded v 23.3 1.8E+02 0.0038 19.0 3.8 19 5-23 5-24 (61)
36 PRK04561 tatA twin arginine tr 23.1 84 0.0018 21.2 2.3 11 10-20 11-21 (75)
37 PRK00888 ftsB cell division pr 21.7 99 0.0022 21.2 2.5 15 6-20 2-16 (105)
38 PRK02958 tatA twin arginine tr 21.6 78 0.0017 21.0 1.9 12 9-20 10-21 (73)
39 PF00895 ATP-synt_8: ATP synth 21.6 1.7E+02 0.0037 16.6 3.3 12 1-12 4-15 (54)
40 PRK00720 tatA twin arginine tr 21.4 78 0.0017 21.3 1.9 12 9-20 10-21 (78)
41 PRK01614 tatE twin arginine tr 20.5 82 0.0018 21.8 1.9 12 9-20 10-21 (85)
42 PRK01833 tatA twin arginine tr 20.5 86 0.0019 20.9 2.0 12 9-20 10-21 (74)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=9.2e-38 Score=201.18 Aligned_cols=60 Identities=57% Similarity=1.384 Sum_probs=59.4
Q ss_pred CchHHhhHHhhcCCCCChHHHHHHhhcCcccccCCCCCCCCCCCCcccccccCCCCCCCC
Q 041400 36 QCASACNYRCSATSHRNPCIEFCNMCCKKCLCVPSGTYGHKEECPCYNNWKTKEGTPKCP 95 (95)
Q Consensus 36 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gtygnk~~CpCY~~~~t~~g~pKCP 95 (95)
||+++|++|||+++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=94.98 E-value=0.033 Score=38.22 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.2
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 041400 1 MARLSWSSIALVLFLSVVFA 20 (95)
Q Consensus 1 MA~~~~~l~~~ll~l~~~f~ 20 (95)
||+++-||+++||+++||++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 88544334444443433333
No 3
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=84.15 E-value=1.5 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=14.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhC
Q 041400 1 MARLSWSSIALVLFLSVVFAVEVANAG 27 (95)
Q Consensus 1 MA~~~~~l~~~ll~l~~~f~~~~~~~g 27 (95)
|| .|++++.||-++++.+.|.+-.+
T Consensus 1 MA--~Kl~vialLC~aLva~vQ~APQY 25 (65)
T PF10731_consen 1 MA--SKLIVIALLCVALVAIVQSAPQY 25 (65)
T ss_pred Cc--chhhHHHHHHHHHHHHHhcCccc
Confidence 77 56776666666555554544333
No 4
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=83.34 E-value=1.1 Score=27.26 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=18.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHH
Q 041400 1 MARLSWSSIALVLFLSVVFAVEVANAGGEGSLKPEQCASA 40 (95)
Q Consensus 1 MA~~~~~l~~~ll~l~~~f~~~~~~~gg~gsl~~~~C~~~ 40 (95)
||.+.+++-+++++++++++ .........=....||+..
T Consensus 1 Ma~ilKFvY~mIiflslflv-~~~~~~~~~C~~d~DCp~~ 39 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLV-VTNVDAIIPCKTDSDCPKD 39 (54)
T ss_pred CccchhhHHHHHHHHHHHHh-hcccCCCcccCccccCCCC
Confidence 88887776554444333222 2111111111355688776
No 5
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=74.68 E-value=4 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 041400 6 WSSIALVLFLSVVFAVEVANAGGE 29 (95)
Q Consensus 6 ~~l~~~ll~l~~~f~~~~~~~gg~ 29 (95)
.+|+.+++++|++..+|.++.|++
T Consensus 29 tILivLVIIiLlImlfqsSS~~~~ 52 (85)
T PF10717_consen 29 TILIVLVIIILLIMLFQSSSNGNS 52 (85)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCC
Confidence 344455455445555566555443
No 6
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=65.71 E-value=5.7 Score=23.92 Aligned_cols=21 Identities=38% Similarity=1.037 Sum_probs=16.6
Q ss_pred HhhHHhhcCCCCChHHHHHHh
Q 041400 40 ACNYRCSATSHRNPCIEFCNM 60 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~C~~ 60 (95)
-|.-|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999998888999999984
No 7
>PLN03207 stomagen; Provisional
Probab=56.67 E-value=20 Score=25.88 Aligned_cols=6 Identities=50% Similarity=1.863 Sum_probs=2.4
Q ss_pred hhHHhh
Q 041400 41 CNYRCS 46 (95)
Q Consensus 41 C~~RCs 46 (95)
|.+||+
T Consensus 84 cr~kc~ 89 (113)
T PLN03207 84 CRYKCR 89 (113)
T ss_pred cccccc
Confidence 344443
No 8
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.34 E-value=13 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041400 7 SSIALVLFLSVVFAVEV 23 (95)
Q Consensus 7 ~l~~~ll~l~~~f~~~~ 23 (95)
+|++|.++|++++.|.+
T Consensus 4 ~lltFg~Fllvi~gMsi 20 (77)
T COG2991 4 FLLTFGIFLLVIAGMSI 20 (77)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 45555555555555543
No 9
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=49.80 E-value=16 Score=26.72 Aligned_cols=26 Identities=46% Similarity=1.156 Sum_probs=18.3
Q ss_pred HhhcCcccccCCCCCCC-------CCCC-Cccccccc
Q 041400 59 NMCCKKCLCVPSGTYGH-------KEEC-PCYNNWKT 87 (95)
Q Consensus 59 ~~CC~~C~CVP~Gtygn-------k~~C-pCY~~~~t 87 (95)
+.||.+| |||||=. .-+| ||-..-.|
T Consensus 41 ~~CC~kC---PPGt~v~~~Ct~~t~T~C~PCp~GTYT 74 (127)
T PHA02637 41 NLCCLSC---PPGTYASRLCDIKTNTQCTPCGSGTFT 74 (127)
T ss_pred CeEcCCC---CCCCEEeCcCCCCCCcccccCCCCCee
Confidence 6788888 7887653 3478 88776655
No 10
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=48.37 E-value=9.4 Score=27.04 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=8.2
Q ss_pred CCchHH-hhHHhhcC
Q 041400 35 EQCASA-CNYRCSAT 48 (95)
Q Consensus 35 ~~C~~~-C~~RCs~~ 48 (95)
+.|.+. |+.+|..+
T Consensus 23 ~~CtS~yC~~fCgsa 37 (98)
T PF10690_consen 23 ISCTSYYCKKFCGSA 37 (98)
T ss_dssp --HHHH-HHHHHHHT
T ss_pred cccchhHHHHhcCCC
Confidence 457776 77777644
No 11
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=45.27 E-value=17 Score=26.12 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 041400 5 SWSSIALVLF 14 (95)
Q Consensus 5 ~~~l~~~ll~ 14 (95)
||+|++|+|+
T Consensus 1 MKll~~lill 10 (212)
T PF11912_consen 1 MKLLISLILL 10 (212)
T ss_pred CcHHHHHHHH
Confidence 3554333333
No 12
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=40.95 E-value=39 Score=21.60 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041400 8 SIALVLFLSVVFAVEVANA 26 (95)
Q Consensus 8 l~~~ll~l~~~f~~~~~~~ 26 (95)
++++++++-++|-+|++..
T Consensus 4 ~~~~il~~gVl~Gmq~An~ 22 (56)
T PF12438_consen 4 LLVIILFFGVLLGMQQANH 22 (56)
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4555555567777888763
No 13
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=38.95 E-value=39 Score=19.54 Aligned_cols=28 Identities=36% Similarity=0.714 Sum_probs=20.4
Q ss_pred cccccCCCCCCCC---CCC-CcccccccCCCC
Q 041400 64 KCLCVPSGTYGHK---EEC-PCYNNWKTKEGT 91 (95)
Q Consensus 64 ~C~CVP~Gtygnk---~~C-pCY~~~~t~~g~ 91 (95)
.|.=.|.|||-+. .+| +|-.+..|...+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~G 41 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEG 41 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCcC
Confidence 4555689999854 579 899998885543
No 14
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=38.55 E-value=7.5 Score=28.39 Aligned_cols=12 Identities=33% Similarity=0.996 Sum_probs=8.1
Q ss_pred CcccccCCCCCC
Q 041400 63 KKCLCVPSGTYG 74 (95)
Q Consensus 63 ~~C~CVP~Gtyg 74 (95)
.+|.|+|-|..+
T Consensus 37 s~CrCiP~~l~~ 48 (120)
T PF08027_consen 37 SDCRCIPWGLFV 48 (120)
T ss_dssp TTSEEEE-SSS-
T ss_pred CCeeEEEeeecc
Confidence 579999988654
No 15
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=38.28 E-value=48 Score=23.31 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=7.6
Q ss_pred CcchhHHHHHHHH
Q 041400 1 MARLSWSSIALVL 13 (95)
Q Consensus 1 MA~~~~~l~~~ll 13 (95)
|+....+|+-|.|
T Consensus 1 M~~Ktnlfl~lSL 13 (93)
T PF03058_consen 1 MVSKTNLFLCLSL 13 (93)
T ss_pred CcchhhhHHHHHH
Confidence 6766666654444
No 16
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=37.64 E-value=11 Score=19.55 Aligned_cols=9 Identities=33% Similarity=0.291 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041400 6 WSSIALVLF 14 (95)
Q Consensus 6 ~~l~~~ll~ 14 (95)
++.++++++
T Consensus 3 k~vIIlvvL 11 (19)
T PF13956_consen 3 KLVIILVVL 11 (19)
T ss_pred eehHHHHHH
Confidence 333333333
No 17
>PF15240 Pro-rich: Proline-rich
Probab=35.79 E-value=24 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041400 8 SIALVLFLSVVFAVE 22 (95)
Q Consensus 8 l~~~ll~l~~~f~~~ 22 (95)
||||.++||+|.++|
T Consensus 3 lVLLSvALLALSSAQ 17 (179)
T PF15240_consen 3 LVLLSVALLALSSAQ 17 (179)
T ss_pred hHHHHHHHHHhhhcc
Confidence 344444444444443
No 18
>PRK09039 hypothetical protein; Validated
Probab=31.52 E-value=61 Score=26.30 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 041400 5 SWSSIALVLFLSVVFA 20 (95)
Q Consensus 5 ~~~l~~~ll~l~~~f~ 20 (95)
+.+|++++|+| ++|+
T Consensus 24 ~~ll~~~~f~l-~~f~ 38 (343)
T PRK09039 24 STLLLVIMFLL-TVFV 38 (343)
T ss_pred HHHHHHHHHHH-HHHH
Confidence 34444444444 3444
No 19
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=30.44 E-value=22 Score=24.64 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=12.6
Q ss_pred cccCCCCCCCCCCCCcccccc
Q 041400 66 LCVPSGTYGHKEECPCYNNWK 86 (95)
Q Consensus 66 ~CVP~Gtygnk~~CpCY~~~~ 86 (95)
.|+|-|...-...|-|..+-+
T Consensus 62 ~C~~~~~~~~~~~C~Cc~~~~ 82 (90)
T PF10868_consen 62 QCVPVGPPPGDGVCYCCYYVK 82 (90)
T ss_pred eeccCCCCCCCcEEEEeccCC
Confidence 367755544567886665543
No 20
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=29.40 E-value=2.7 Score=24.82 Aligned_cols=42 Identities=31% Similarity=0.920 Sum_probs=28.5
Q ss_pred CCCchHHhhHHhhcCCCCChHHHHHHhhcCcccccCCCCCCCCC-CC
Q 041400 34 PEQCASACNYRCSATSHRNPCIEFCNMCCKKCLCVPSGTYGHKE-EC 79 (95)
Q Consensus 34 ~~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gtygnk~-~C 79 (95)
..+|++.|...|+.......|.. .|=.-|.| |+|++-|.+ .|
T Consensus 7 y~~C~~~C~~tC~~~~~~~~C~~---~C~~gC~C-~~G~v~~~~~~C 49 (55)
T PF01826_consen 7 YSECGSPCPRTCDNPNNPEPCSE---PCVEGCFC-PPGYVRNDNGRC 49 (55)
T ss_dssp EESSETSTTCBSSCTTTSSSCSS---S-ESEEEE-TTTEEEETTSEE
T ss_pred eCcccCCcCCcCCCCCCCcCcCC---CCCccCCC-CCCeeEcCCCCE
Confidence 45899999999998777776663 33344677 568776554 44
No 21
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=28.35 E-value=1.4e+02 Score=26.21 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.0
Q ss_pred hhHHhhcCCCCChHHH
Q 041400 41 CNYRCSATSHRNPCIE 56 (95)
Q Consensus 41 C~~RCs~~~~~~~C~~ 56 (95)
=...|+.+.+++.|.+
T Consensus 37 Irs~C~~T~YP~lC~s 52 (539)
T PLN02995 37 IDGWCDKTPYPDPCKC 52 (539)
T ss_pred HHhhcCCCCChHHHHH
Confidence 3456899999998863
No 22
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=27.17 E-value=60 Score=22.54 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 liIlvIvlllFG 21 (92)
T PRK00442 10 IVILVVVVLVFG 21 (92)
T ss_pred HHHHHHHHHHhC
Confidence 444444445554
No 23
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=26.97 E-value=1.1e+02 Score=20.89 Aligned_cols=8 Identities=13% Similarity=-0.134 Sum_probs=5.7
Q ss_pred CcchhHHH
Q 041400 1 MARLSWSS 8 (95)
Q Consensus 1 MA~~~~~l 8 (95)
|+.+..||
T Consensus 1 m~gvvNL~ 8 (92)
T PF09919_consen 1 MSGVVNLF 8 (92)
T ss_pred CccHHHHH
Confidence 66677777
No 24
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=26.60 E-value=70 Score=26.32 Aligned_cols=9 Identities=22% Similarity=0.922 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 041400 54 CIEFCNMCC 62 (95)
Q Consensus 54 C~~~C~~CC 62 (95)
+..+|+.-|
T Consensus 37 ~~~~~~~~c 45 (286)
T KOG4742|consen 37 TPPYCKFGC 45 (286)
T ss_pred ccccccCCC
Confidence 334444433
No 25
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=26.37 E-value=1.2e+02 Score=19.59 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 041400 6 WSSIALVLFL 15 (95)
Q Consensus 6 ~~l~~~ll~l 15 (95)
|+++.|++++
T Consensus 7 KL~~~f~~~~ 16 (181)
T PF12729_consen 7 KLILGFGLII 16 (181)
T ss_pred HHHHHHHHHH
Confidence 4544443333
No 26
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=25.80 E-value=58 Score=22.08 Aligned_cols=12 Identities=8% Similarity=0.545 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 liIlvivlllFG 21 (81)
T PRK04598 10 LIIAVIVVLLFG 21 (81)
T ss_pred HHHHHHHHHHhC
Confidence 444444445554
No 27
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=25.71 E-value=55 Score=26.62 Aligned_cols=14 Identities=36% Similarity=0.216 Sum_probs=7.9
Q ss_pred CcchhHHHHHHHHH
Q 041400 1 MARLSWSSIALVLF 14 (95)
Q Consensus 1 MA~~~~~l~~~ll~ 14 (95)
||++..||+++|++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (291)
T PLN03161 1 MASLKTLLVALFAA 14 (291)
T ss_pred ChhHHHHHHHHHHH
Confidence 78765555555443
No 28
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=25.54 E-value=23 Score=26.57 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 041400 1 MARLSWSSIALVLFLSVVFAV 21 (95)
Q Consensus 1 MA~~~~~l~~~ll~l~~~f~~ 21 (95)
|+.-+-+|+++||++++||+.
T Consensus 1 m~pr~l~~LavLL~~A~Lfag 21 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAG 21 (143)
T ss_dssp ---------------------
T ss_pred Ccccccccccccccccccccc
Confidence 564444566666666666764
No 29
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=25.06 E-value=60 Score=22.55 Aligned_cols=13 Identities=8% Similarity=0.450 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 041400 8 SIALVLFLSVVFA 20 (95)
Q Consensus 8 l~~~ll~l~~~f~ 20 (95)
|++++++++++|-
T Consensus 9 LlIIlvIvLLlFG 21 (89)
T PRK03554 9 LLIIAVIVVLLFG 21 (89)
T ss_pred HHHHHHHHHHHhC
Confidence 3444444445554
No 30
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=25.01 E-value=1.1e+02 Score=22.73 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=8.4
Q ss_pred CcchhHHHHHHHHHHHHH
Q 041400 1 MARLSWSSIALVLFLSVV 18 (95)
Q Consensus 1 MA~~~~~l~~~ll~l~~~ 18 (95)
|..+.+++++++++.+++
T Consensus 1 ~~~~kkl~~~~v~~~l~l 18 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTL 18 (170)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 444455655544443333
No 31
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=24.69 E-value=42 Score=23.38 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=12.6
Q ss_pred HhhHHhhcCCCCChHHHH
Q 041400 40 ACNYRCSATSHRNPCIEF 57 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~ 57 (95)
.=+.-|..+.+++.|...
T Consensus 31 ~i~~~C~~t~~~~~C~~~ 48 (178)
T TIGR01614 31 LIKRICKKTEYPNFCIST 48 (178)
T ss_pred HHHHHHcCCCChHHHHHH
Confidence 445567888888888654
No 32
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=24.22 E-value=83 Score=19.84 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 041400 6 WSSIALVLFLSVVFAV 21 (95)
Q Consensus 6 ~~l~~~ll~l~~~f~~ 21 (95)
|.|.++.-+|+++|..
T Consensus 2 RTL~LLaAlLLlAlqa 17 (52)
T PF00879_consen 2 RTLALLAALLLLALQA 17 (52)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3443333333344443
No 33
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=23.70 E-value=1.2e+02 Score=18.64 Aligned_cols=15 Identities=13% Similarity=0.747 Sum_probs=8.4
Q ss_pred CcchhHHHHHHHHHH
Q 041400 1 MARLSWSSIALVLFL 15 (95)
Q Consensus 1 MA~~~~~l~~~ll~l 15 (95)
||++..+++.+++.+
T Consensus 4 msPm~W~~l~~~f~~ 18 (53)
T MTH00260 4 LSPMSWLTAMIIFWF 18 (53)
T ss_pred cccHHHHHHHHHHHH
Confidence 667666665444433
No 34
>PF02533 PsbK: Photosystem II 4 kDa reaction centre component; InterPro: IPR003687 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbK found in PSII, where it is tightly associated with the antenna protein CP43 (PsbC). PsbK is required for accumulation of the PSII complex, and may participate in the assembly and stability of the PSII complex. In particular, PsbK may be involved in the binding of plastoquinone and in maintaining the dimeric organisation of PSII [, ].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 4FBY_K 3PRQ_K 1IZL_W 3BZ1_K 2AXT_K 1S5L_K 3PRR_K 3BZ2_K 3KZI_K 3A0B_k ....
Probab=23.68 E-value=85 Score=19.20 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 041400 13 LFLSVVFAVEVA 24 (95)
Q Consensus 13 l~l~~~f~~~~~ 24 (95)
|+++++|++|.+
T Consensus 27 lf~LLAfVWQAa 38 (42)
T PF02533_consen 27 LFFLLAFVWQAA 38 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344568888865
No 35
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.31 E-value=1.8e+02 Score=19.04 Aligned_cols=19 Identities=21% Similarity=0.231 Sum_probs=8.0
Q ss_pred hHHHHHHHH-HHHHHHHHHH
Q 041400 5 SWSSIALVL-FLSVVFAVEV 23 (95)
Q Consensus 5 ~~~l~~~ll-~l~~~f~~~~ 23 (95)
...|++++| +++.+|....
T Consensus 5 ksifL~l~~~LsA~~FSasa 24 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSASA 24 (61)
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 334433333 3344555443
No 36
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=23.05 E-value=84 Score=21.21 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 041400 10 ALVLFLSVVFA 20 (95)
Q Consensus 10 ~~ll~l~~~f~ 20 (95)
+++++++++|-
T Consensus 11 IIlvIvlLlFG 21 (75)
T PRK04561 11 VVLVIVLLVFG 21 (75)
T ss_pred HHHHHHHHHhC
Confidence 33333344443
No 37
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.70 E-value=99 Score=21.15 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 041400 6 WSSIALVLFLSVVFA 20 (95)
Q Consensus 6 ~~l~~~ll~l~~~f~ 20 (95)
|+|+++++++++.|.
T Consensus 2 ~~~~~vll~ll~~l~ 16 (105)
T PRK00888 2 RLLTLLLLALLVWLQ 16 (105)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444444433333
No 38
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=21.57 E-value=78 Score=21.02 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 liIl~IvlllFG 21 (73)
T PRK02958 10 LIVLVIVVLVFG 21 (73)
T ss_pred HHHHHHHHHHhC
Confidence 333344444443
No 39
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.57 E-value=1.7e+02 Score=16.61 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=5.0
Q ss_pred CcchhHHHHHHH
Q 041400 1 MARLSWSSIALV 12 (95)
Q Consensus 1 MA~~~~~l~~~l 12 (95)
|+.+..++.+++
T Consensus 4 L~P~~W~~~f~~ 15 (54)
T PF00895_consen 4 LNPMPWFFLFLF 15 (54)
T ss_pred CChHHHHHHHHH
Confidence 344444443333
No 40
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=21.42 E-value=78 Score=21.33 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 lIIlvIvlllFG 21 (78)
T PRK00720 10 LIVLAVVLLLFG 21 (78)
T ss_pred HHHHHHHHHHhC
Confidence 344444445554
No 41
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=20.48 E-value=82 Score=21.78 Aligned_cols=12 Identities=8% Similarity=0.531 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 LIIlvIvLLLFG 21 (85)
T PRK01614 10 LVVGILIVLLFG 21 (85)
T ss_pred HHHHHHHHHHhC
Confidence 333344445554
No 42
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=20.48 E-value=86 Score=20.87 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 041400 9 IALVLFLSVVFA 20 (95)
Q Consensus 9 ~~~ll~l~~~f~ 20 (95)
++++++++++|-
T Consensus 10 liIl~i~lllFG 21 (74)
T PRK01833 10 LIIVAIIVLLFG 21 (74)
T ss_pred HHHHHHHHHHhC
Confidence 333334444554
Done!