Query 041400
Match_columns 95
No_of_seqs 104 out of 209
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9e_C Anti-coagulant protein 42.1 2.6 8.9E-05 26.8 -1.5 51 34-88 12-79 (84)
2 1xu2_R Tumor necrosis factor r 41.0 10 0.00035 22.8 1.2 21 40-60 19-39 (47)
3 4b7j_A Neuraminidase; hydrolas 33.8 14 0.00047 31.1 1.2 16 69-84 269-284 (469)
4 2htq_A Neuraminidase; zanamivi 32.1 18 0.00063 29.7 1.6 17 69-85 187-203 (390)
5 1nsc_A Neuraminidase; hydrolas 29.5 8.8 0.0003 31.6 -0.7 14 69-82 191-204 (390)
6 1v0z_A Neuraminidase; glycosid 26.3 15 0.00051 30.3 0.2 17 69-85 188-204 (389)
7 1f8d_A Neuraminidase; hydrolas 26.1 15 0.00052 30.2 0.2 17 69-85 188-204 (388)
8 3arc_K Photosystem II reaction 25.0 51 0.0017 18.9 2.2 12 13-24 22-33 (37)
9 4gdi_A Neuraminidase; influenz 24.5 16 0.00054 29.9 0.0 16 69-84 190-205 (373)
10 3tia_A Neuraminidase; 6-bladed 24.2 17 0.00057 30.6 0.1 12 71-82 270-281 (469)
11 1nmb_N N9 neuraminidase; compl 23.4 25 0.00085 29.6 1.0 15 70-84 271-285 (470)
12 3tje_F Tumor necrosis factor r 22.8 30 0.001 24.1 1.2 23 59-84 41-72 (156)
13 3b7e_A Neuraminidase; 6-bladed 22.4 20 0.00068 29.5 0.2 17 69-85 187-203 (385)
14 3sal_A Neuraminidase; 6-bladed 22.1 17 0.00057 30.0 -0.3 17 68-84 187-203 (395)
15 2xtt_A Protease inhibitor SGPI 20.0 19 0.00064 20.2 -0.3 18 62-79 14-32 (36)
No 1
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=42.11 E-value=2.6 Score=26.83 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=22.1
Q ss_pred CCCchH-HhhHHhhcC-------CC-CChH-HHHHHhhcCcccccCCCCCCCC-------CCCCcccccccC
Q 041400 34 PEQCAS-ACNYRCSAT-------SH-RNPC-IEFCNMCCKKCLCVPSGTYGHK-------EECPCYNNWKTK 88 (95)
Q Consensus 34 ~~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gtygnk-------~~CpCY~~~~t~ 88 (95)
..+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 12 y~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 12 YDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp CC-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred eCCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 457999 999999863 22 3678 66665 578885 4888774 568887665443
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=41.04 E-value=10 Score=22.78 Aligned_cols=21 Identities=33% Similarity=0.933 Sum_probs=17.6
Q ss_pred HhhHHhhcCCCCChHHHHHHh
Q 041400 40 ACNYRCSATSHRNPCIEFCNM 60 (95)
Q Consensus 40 ~C~~RCs~~~~~~~C~~~C~~ 60 (95)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 388999977788999999963
No 3
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=33.81 E-value=14 Score=31.10 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCcccc
Q 041400 69 PSGTYGHKEECPCYNN 84 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~ 84 (95)
.+|+..|.|||.||.+
T Consensus 269 l~gs~~HiEECSCY~~ 284 (469)
T 4b7j_A 269 MNAPNYHYEECSCYPD 284 (469)
T ss_dssp CCCTTCCCCSCEEEEE
T ss_pred cCCCcccceeeeeccC
Confidence 4577778888888765
No 4
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=32.11 E-value=18 Score=29.72 Aligned_cols=17 Identities=53% Similarity=0.735 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCccccc
Q 041400 69 PSGTYGHKEECPCYNNW 85 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~~ 85 (95)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999754
No 5
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=29.49 E-value=8.8 Score=31.59 Aligned_cols=14 Identities=50% Similarity=1.094 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCcc
Q 041400 69 PSGTYGHKEECPCY 82 (95)
Q Consensus 69 P~Gtygnk~~CpCY 82 (95)
.+|+.+|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 35788899999999
No 6
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=26.31 E-value=15 Score=30.26 Aligned_cols=17 Identities=41% Similarity=0.806 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 041400 69 PSGTYGHKEECPCYNNW 85 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~~ 85 (95)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46888999999999765
No 7
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=26.09 E-value=15 Score=30.21 Aligned_cols=17 Identities=47% Similarity=0.913 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 041400 69 PSGTYGHKEECPCYNNW 85 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~~ 85 (95)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999765
No 8
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=24.97 E-value=51 Score=18.86 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 041400 13 LFLSVVFAVEVA 24 (95)
Q Consensus 13 l~l~~~f~~~~~ 24 (95)
++++++|+.|.+
T Consensus 22 ~f~lLafvWQAa 33 (37)
T 3arc_K 22 LFLALAFVWQAA 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344568888864
No 9
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=24.55 E-value=16 Score=29.94 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCcccc
Q 041400 69 PSGTYGHKEECPCYNN 84 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~ 84 (95)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3578889999999954
No 10
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=24.23 E-value=17 Score=30.59 Aligned_cols=12 Identities=58% Similarity=1.309 Sum_probs=5.3
Q ss_pred CCCCCCCCCCcc
Q 041400 71 GTYGHKEECPCY 82 (95)
Q Consensus 71 Gtygnk~~CpCY 82 (95)
|+.++.|||.||
T Consensus 270 ~~~~HiEECSCY 281 (469)
T 3tia_A 270 GSAQHIEECSCY 281 (469)
T ss_dssp SSCCCCEEEEEE
T ss_pred CCCccceeeeec
Confidence 344444444444
No 11
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=23.41 E-value=25 Score=29.58 Aligned_cols=15 Identities=53% Similarity=1.130 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCcccc
Q 041400 70 SGTYGHKEECPCYNN 84 (95)
Q Consensus 70 ~Gtygnk~~CpCY~~ 84 (95)
+|+.++.|||.||-+
T Consensus 271 ~~~~~HiEECscy~~ 285 (470)
T 1nmb_N 271 TGTAKHIEECSCYGE 285 (470)
T ss_dssp CSSCSCCCSCEEEEE
T ss_pred CCCcCceEeeeEecC
Confidence 466666677777654
No 12
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=22.78 E-value=30 Score=24.11 Aligned_cols=23 Identities=35% Similarity=1.028 Sum_probs=14.8
Q ss_pred HhhcCcccccCCCCCCC--------CCCC-Ccccc
Q 041400 59 NMCCKKCLCVPSGTYGH--------KEEC-PCYNN 84 (95)
Q Consensus 59 ~~CC~~C~CVP~Gtygn--------k~~C-pCY~~ 84 (95)
+.||.+| |||+|=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4567766 6887732 3578 78665
No 13
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=22.44 E-value=20 Score=29.49 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCccccc
Q 041400 69 PSGTYGHKEECPCYNNW 85 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~~ 85 (95)
.+|+.+|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 46888999999999764
No 14
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=22.07 E-value=17 Score=30.00 Aligned_cols=17 Identities=53% Similarity=0.806 Sum_probs=14.1
Q ss_pred cCCCCCCCCCCCCcccc
Q 041400 68 VPSGTYGHKEECPCYNN 84 (95)
Q Consensus 68 VP~Gtygnk~~CpCY~~ 84 (95)
.++|..++.|||.||-+
T Consensus 187 ~l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPN 203 (395)
T ss_dssp EECCTTCCCEEEEEEEE
T ss_pred ecCCCCccceeeeecCC
Confidence 35788899999999965
No 15
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=20.04 E-value=19 Score=20.16 Aligned_cols=18 Identities=28% Similarity=0.983 Sum_probs=10.8
Q ss_pred cCcccccCCCCCC-CCCCC
Q 041400 62 CKKCLCVPSGTYG-HKEEC 79 (95)
Q Consensus 62 C~~C~CVP~Gtyg-nk~~C 79 (95)
|..|.|.|.|... .+..|
T Consensus 14 CNtC~C~~~G~W~CT~~~C 32 (36)
T 2xtt_A 14 CNTCRCGSDGVWACTRMGC 32 (36)
T ss_dssp TEEEEECTTSCEEEECCCC
T ss_pred CCccCCCCCCEEeeeCCcC
Confidence 4667888777543 34444
Done!