Query 041400
Match_columns 95
No_of_seqs 104 out of 209
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 11:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041400.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041400hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 67.3 0.25 1.8E-05 29.6 -1.6 54 34-88 7-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 56.0 2 0.00015 23.8 1.1 19 62-80 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 53.3 2.5 0.00018 22.8 1.2 19 41-59 17-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 51.3 1.6 0.00012 24.9 0.2 25 60-87 16-49 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 36.2 3.8 0.00028 31.7 0.2 19 68-86 185-203 (387)
6 d1f8ea_ b.68.1.1 (A:) Influenz 33.1 4.6 0.00034 31.3 0.2 17 69-85 188-204 (388)
7 d2c7na1 g.39.1.15 (A:18-73) Ra 31.4 4.2 0.00031 23.8 -0.2 16 71-86 7-26 (56)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 30.2 17 0.0012 19.5 2.2 12 13-24 22-33 (37)
9 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 28.4 1.1 8.3E-05 25.5 -3.2 37 34-74 10-46 (60)
10 d1kloa3 g.3.11.2 (A:122-172) L 19.5 16 0.0012 19.6 0.8 21 65-85 1-28 (51)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=67.34 E-value=0.25 Score=29.63 Aligned_cols=54 Identities=28% Similarity=0.541 Sum_probs=24.6
Q ss_pred CCCchH-HhhHHhhcCCCCChHHHHHHh------hcCcccccCCCCCCCC-------CCCCcccccccC
Q 041400 34 PEQCAS-ACNYRCSATSHRNPCIEFCNM------CCKKCLCVPSGTYGHK-------EECPCYNNWKTK 88 (95)
Q Consensus 34 ~~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~Gtygnk-------~~CpCY~~~~t~ 88 (95)
..+|++ .|..-|+.-.....|...++. |=.-|.| |+|++-|. ++||||.+=++.
T Consensus 7 y~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 7 YDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp CC-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 356765 577777766565556555543 3355777 89998765 357898766554
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.03 E-value=2 Score=23.81 Aligned_cols=19 Identities=47% Similarity=1.497 Sum_probs=14.5
Q ss_pred cCcccccCCCCCCCC-CCCC
Q 041400 62 CKKCLCVPSGTYGHK-EECP 80 (95)
Q Consensus 62 C~~C~CVP~Gtygnk-~~Cp 80 (95)
|++|.|-.||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888855 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.32 E-value=2.5 Score=22.85 Aligned_cols=19 Identities=37% Similarity=1.037 Sum_probs=17.4
Q ss_pred hhHHhhcCCCCChHHHHHH
Q 041400 41 CNYRCSATSHRNPCIEFCN 59 (95)
Q Consensus 41 C~~RCs~~~~~~~C~~~C~ 59 (95)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7889999999999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.34 E-value=1.6 Score=24.85 Aligned_cols=25 Identities=44% Similarity=1.120 Sum_probs=17.0
Q ss_pred hhcCcccccCCCCC------C--CCCCC-Cccccccc
Q 041400 60 MCCKKCLCVPSGTY------G--HKEEC-PCYNNWKT 87 (95)
Q Consensus 60 ~CC~~C~CVP~Gty------g--nk~~C-pCY~~~~t 87 (95)
.||.+| |||+| + ...+| ||-..-.|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 466665 89988 4 24688 88776544
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=36.20 E-value=3.8 Score=31.74 Aligned_cols=19 Identities=42% Similarity=0.852 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCCCcccccc
Q 041400 68 VPSGTYGHKEECPCYNNWK 86 (95)
Q Consensus 68 VP~Gtygnk~~CpCY~~~~ 86 (95)
.++|+.++.|||.||.+..
T Consensus 185 ~l~g~~~HiEECSCYp~~~ 203 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRYP 203 (387)
T ss_dssp ECCSSCCCCEEEEEEEETT
T ss_pred ecCCCcCceEeeeecCCCC
Confidence 3678999999999998763
No 6
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=33.05 E-value=4.6 Score=31.28 Aligned_cols=17 Identities=47% Similarity=0.913 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 041400 69 PSGTYGHKEECPCYNNW 85 (95)
Q Consensus 69 P~Gtygnk~~CpCY~~~ 85 (95)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57889999999999874
No 7
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.40 E-value=4.2 Score=23.77 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=12.3
Q ss_pred CCCCC---CCCC-Ccccccc
Q 041400 71 GTYGH---KEEC-PCYNNWK 86 (95)
Q Consensus 71 Gtygn---k~~C-pCY~~~~ 86 (95)
|.||| .+.| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 67775 5889 6999874
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.18 E-value=17 Score=19.48 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 041400 13 LFLSVVFAVEVA 24 (95)
Q Consensus 13 l~l~~~f~~~~~ 24 (95)
++++++|++|.+
T Consensus 22 ~f~lLafVWQAa 33 (37)
T d2axtk1 22 LFLALAFVWQAA 33 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344568888865
No 9
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=28.41 E-value=1.1 Score=25.55 Aligned_cols=37 Identities=35% Similarity=0.696 Sum_probs=26.9
Q ss_pred CCCchHHhhHHhhcCCCCChHHHHHHhhcCcccccCCCCCC
Q 041400 34 PEQCASACNYRCSATSHRNPCIEFCNMCCKKCLCVPSGTYG 74 (95)
Q Consensus 34 ~~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gtyg 74 (95)
..+|+++|..-|+.-.....|.+.|- .-|.| |+|++=
T Consensus 10 y~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~vl 46 (60)
T d1hx2a_ 10 FQTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTVL 46 (60)
T ss_dssp EESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCEE
T ss_pred eCcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEeE
Confidence 45789999999987666667766443 55777 788763
No 10
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.53 E-value=16 Score=19.63 Aligned_cols=21 Identities=33% Similarity=0.895 Sum_probs=14.0
Q ss_pred ccccCCCCCCCC-------CCCCccccc
Q 041400 65 CLCVPSGTYGHK-------EECPCYNNW 85 (95)
Q Consensus 65 C~CVP~Gtygnk-------~~CpCY~~~ 85 (95)
|.|-|.||.++. ..|+|-.+.
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v 28 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPHV 28 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTTE
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCCC
Confidence 788899987654 356665543
Done!