BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041406
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
N L G++ +SN L +SL N+L+ +P +G L L L L +NSF+G IP+ELG
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 150 KLKNLKTLDLSGNEFNGTV-------------------------RDKLLPPEIGELSLLE 184
++L LDL+ N FNGT+ D + G +LLE
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 185 IFSSPS-----------CSITGPLPEELSKLKF-----LSMLDLSENPLKCSVPKAIGEL 228
S C+IT + + F + LD+S N L +PK IG +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
L ILNLG ++GSIP E+G L + LS N L G +P+ +S L +L
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 29/185 (15%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
N G++ +SN L L L N LS +PS LG L++L L L N GEIP EL
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208
+K L+TL L N+ +TG +P LS L+
Sbjct: 460 MYVKTLETLILDFND-----------------------------LTGEIPSGLSNCTNLN 490
Query: 209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268
+ LS N L +PK IG L L IL L + +G+IPAELG C +L+ + L+ N +G+
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 269 LPEQL 273
+P +
Sbjct: 551 IPAAM 555
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 8/195 (4%)
Query: 90 NPLFGQLSRQVSNL-KRLKQLSLGENQLSDFVPSQL--GVLTQLETLSLGSNSFTGEIPS 146
N G+L ++NL L L L N S + L L+ L L +N FTG+IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
L L +L LS N +GT+ P +G LS L + G +P+EL +K
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTI-----PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
L L L N L +P + L ++L + +L G IP +G+ ENL + LS N+ S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 267 GSLPEQLSELPVLIF 281
G++P +L + LI+
Sbjct: 525 GNIPAELGDCRSLIW 539
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 43/236 (18%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
N L G++ + + L+ L L L N S +P++LG L L L +N F G IP+ +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 149 GKLKNLKTLD-LSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS-----------CSIT-- 194
K + ++G + D + G +LLE S C+IT
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 195 ---------------------------GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227
G +P+E+ + +L +L+L N + S+P +G+
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 228 LRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE--QLSELPVLIF 281
LR L IL+L S +L+G IP + L + LS N LSG +PE Q P F
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 97/224 (43%), Gaps = 46/224 (20%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL- 148
N L G SR +S LK L++ NQ +P L L+ LSL N FTGEIP L
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 287
Query: 149 GKLKNLKTLDLSG------------------------NEFNGTV-RDKLLPPEIGELSLL 183
G L LDLSG N F+G + D LL ++ L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-----KMRGL 342
Query: 184 EIFSSPSCSITGPLPEELSKLKF-LSMLDLSEN-------PLKCSVPKAIGELRKLGILN 235
++ +G LPE L+ L L LDLS N P C PK L++L + N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK--NTLQELYLQN 400
Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
G T G IP L C L+S+ LS N LSG++P L L L
Sbjct: 401 NGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEF 164
L L L N VP G + LE+L+L SN+F+GE+P + L K++ LK LDLS NEF
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 165 NGTVRDKLLPPEIGELSL---LEIFSSP-------------------SCSITGPLPEELS 202
+G + + L L+L FS P + TG +P LS
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
L L LS N L ++P ++G L KL L L L G IP EL + L +++L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 263 NALSGSLPEQLS 274
N L+G +P LS
Sbjct: 473 NDLTGEIPSGLS 484
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 23 QSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHXXXXXXXXXXXXXX 82
LISFK+ L + L W+ C + GV+C+ +V + L +
Sbjct: 12 HQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLL 71
Query: 83 XXXXXXQNPLFG-QLSRQVSNLK---RLKQLSLGENQLSDFVP--SQLGVLTQLETLSLG 136
L ++ VS K L L L N LS V + LG + L+ L++
Sbjct: 72 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 131
Query: 137 SNS--FTGEIPSELGKLKNLKTLDLSGNEFNGT-VRDKLLPPEIGELSLLEIFSSPSCSI 193
SN+ F G++ L KL +L+ LDLS N +G V +L GEL L I + I
Sbjct: 132 SNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---KI 187
Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
+G + ++S+ L LD+S N +P +G+ L L++ +L+G + C
Sbjct: 188 SGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 244
Query: 254 NLMSVMLSCNALSGSLP 270
L + +S N G +P
Sbjct: 245 ELKLLNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 41/231 (17%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
N L G++ +SN L +SL N+L+ +P +G L L L L +NSF+G IP+ELG
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 150 KLKNLKTLDLSGNEFNGTV-------------------------RDKLLPPEIGELSLLE 184
++L LDL+ N FNGT+ D + G +LLE
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 185 IFSSPS-----------CSITGPLPEELSKLKF-----LSMLDLSENPLKCSVPKAIGEL 228
S C+IT + + F + LD+S N L +PK IG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
L ILNLG ++GSIP E+G L + LS N L G +P+ +S L +L
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 29/185 (15%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
N G++ +SN L L L N LS +PS LG L++L L L N GEIP EL
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208
+K L+TL L N+ +TG +P LS L+
Sbjct: 463 MYVKTLETLILDFND-----------------------------LTGEIPSGLSNCTNLN 493
Query: 209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268
+ LS N L +PK IG L L IL L + +G+IPAELG C +L+ + L+ N +G+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 269 LPEQL 273
+P +
Sbjct: 554 IPAAM 558
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 8/195 (4%)
Query: 90 NPLFGQLSRQVSNLK-RLKQLSLGENQLSDFVPSQL--GVLTQLETLSLGSNSFTGEIPS 146
N G+L ++NL L L L N S + L L+ L L +N FTG+IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
L L +L LS N +GT+ P +G LS L + G +P+EL +K
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTI-----PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266
L L L N L +P + L ++L + +L G IP +G+ ENL + LS N+ S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 267 GSLPEQLSELPVLIF 281
G++P +L + LI+
Sbjct: 528 GNIPAELGDCRSLIW 542
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 41/224 (18%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL 148
N L G++ + + L+ L L L N S +P++LG L L L +N F G IP+ +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 149 GKLKNLKTLD-LSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS-----------CSIT-- 194
K + ++G + D + G +LLE S C+IT
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 195 ---------------------------GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227
G +P+E+ + +L +L+L N + S+P +G+
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 228 LRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE 271
LR L IL+L S +L+G IP + L + LS N LSG +PE
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 97/224 (43%), Gaps = 46/224 (20%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSEL- 148
N L G SR +S LK L++ NQ +P L L+ LSL N FTGEIP L
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290
Query: 149 GKLKNLKTLDLSG------------------------NEFNGTV-RDKLLPPEIGELSLL 183
G L LDLSG N F+G + D LL ++ L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-----KMRGL 345
Query: 184 EIFSSPSCSITGPLPEELSKLKF-LSMLDLSEN-------PLKCSVPKAIGELRKLGILN 235
++ +G LPE L+ L L LDLS N P C PK L++L + N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK--NTLQELYLQN 403
Query: 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
G T G IP L C L+S+ LS N LSG++P L L L
Sbjct: 404 NGFT---GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEF 164
L L L N VP G + LE+L+L SN+F+GE+P + L K++ LK LDLS NEF
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 165 NGTVRDKLLPPEIGELSL---LEIFSSP-------------------SCSITGPLPEELS 202
+G + + L L+L FS P + TG +P LS
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
L L LS N L ++P ++G L KL L L L G IP EL + L +++L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 263 NALSGSLPEQLS 274
N L+G +P LS
Sbjct: 476 NDLTGEIPSGLS 487
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 23 QSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHXXXXXXXXXXXXXX 82
LISFK+ L + L W+ C + GV+C+ +V + L +
Sbjct: 15 HQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLL 74
Query: 83 XXXXXXQNPLFG-QLSRQVSNLK---RLKQLSLGENQLSDFVP--SQLGVLTQLETLSLG 136
L ++ VS K L L L N LS V + LG + L+ L++
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134
Query: 137 SNS--FTGEIPSELGKLKNLKTLDLSGNEFNGT-VRDKLLPPEIGELSLLEIFSSPSCSI 193
SN+ F G++ L KL +L+ LDLS N +G V +L GEL L I + I
Sbjct: 135 SNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---KI 190
Query: 194 TGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253
+G + ++S+ L LD+S N +P +G+ L L++ +L+G + C
Sbjct: 191 SGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 254 NLMSVMLSCNALSGSLP 270
L + +S N G +P
Sbjct: 248 ELKLLNISSNQFVGPIP 264
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182
QL L+ ++ S + G ++ LD+S N +G + P EIG +
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-----PKEIGSMPY 657
Query: 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
L I + I+G +P+E+ L+ L++LDLS N L +P+A+ L L ++L + L+
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 243 GSIPAELGKCENL 255
G IP E+G+ E
Sbjct: 718 GPIP-EMGQFETF 729
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG 149
N L G + +++ ++ L L+LG N +S +P ++G L L L L SN G IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 150 KLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL 180
L L +DLS N +G + PE+G+
Sbjct: 702 ALTMLTEIDLSNNNLSGPI------PEMGQF 726
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 114/276 (41%), Gaps = 24/276 (8%)
Query: 19 NP-DEQSLISFKNALESSHNLVSWNKTNPHC--YWVGVSCQRGRVIWLV---------LP 66
NP D+Q+L+ K L + L SW T C W+GV C + V LP
Sbjct: 4 NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67 THXXXXXXXXXXXXXXXXXXXXQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126
N L G + ++ L +L L + +S +P L
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 127 LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186
+ L TL N+ +G +P + L NL + GN +G + P G S ++F
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-----PDSYGSFS--KLF 176
Query: 187 SSPSCS---ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243
+S + S +TG +P + L L+ +DLS N L+ G + ++L L
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235
Query: 244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVL 279
+ ++G +NL + L N + G+LP+ L++L L
Sbjct: 236 DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 144 IPSELGKLKNLKTLDLSG-NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202
IPS L L L L + G N G + PP I +L+ L +++G +P+ LS
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPI-----PPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LS 261
++K L LD S N L ++P +I L L + +++G+IP G L + M +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 262 CNALSGSLPEQLSELPVLIFAAEKN 286
N L+G +P + L + +N
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRN 207
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 21/163 (12%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLET-LSLGSNSFTGEIPSEL 148
N L G L +S+L L ++ N++S +P G ++L T +++ N TG+IP
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 149 GKLKNLKTLDLSGNEFNGTVR-----DK----------LLPPEIGELSL---LEIFSSPS 190
L NL +DLS N G DK L ++G++ L L +
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI 233
I G LP+ L++LKFL L++S N L +P+ G L++ +
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 108 QLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT--GEIPSELGKLKNLKTLDLSGNEFN 165
L N L+D V G LT+LETL L N +I ++K+L+ LD+S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI 225
+ LSL + + +I LP + +LDL N +K S+PK +
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR------IKVLDLHSNKIK-SIPKQV 440
Query: 226 GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE 271
+L L LN+ S QL + +L + L N S P
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 94 GQLSRQVSNLKRLKQLSLGENQLS-DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLK 152
+++ + +K L+QL + +N +S D L +L++ SN T I L
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-- 421
Query: 153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDL 212
+K LDL N+ K +P ++ +L L+ + S + +L L + L
Sbjct: 422 RIKVLDLHSNKI------KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 213 SENPLKCSVPK 223
NP CS P+
Sbjct: 476 HTNPWDCSCPR 486
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP 189
L L L NS T E+P+E+ L NL+ LDLS N LP E+G L+ F
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------LPAELGSCFQLKYFYFF 301
Query: 190 SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGIL 234
+T LP E L L L + NPL+ K + E G++
Sbjct: 302 DNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLI 345
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGS 238
+LS L+IF+ + + K FL+ L L+ N L +P I L L +L+L
Sbjct: 230 DLSNLQIFN---------ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSH 279
Query: 239 TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
+L S+PAELG C L N ++ +LP + L L F
Sbjct: 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V +L +LK L++G NQ+SD S L L+QL +L L +N E +G L NL TL L
Sbjct: 261 VKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 160 SGNEF 164
S N
Sbjct: 319 SQNHI 323
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
++NL L LSL NQ+ D P L LT L + N T P + L +L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 160 SGNEFNGTVRDKLLPP--EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
N+ L P + +L+ LEI ++ I ++L+KLK L++ N
Sbjct: 229 GNNKITD------LSPLANLSQLTWLEIGTNQISDINA--VKDLTKLK---XLNVGSN-- 275
Query: 218 KCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ S + L +L L L + QL +G NL ++ LS N ++ P
Sbjct: 276 QISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L LK+L L ENQL LT L L+L N KL NL LDLS N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 163 EFNG---TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ V DKL +L L ++ + S+ + + L+ L+++ + D NP C
Sbjct: 168 QLQSLPEGVFDKL-----TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD---NPWDC 219
Query: 220 SVP 222
+ P
Sbjct: 220 TCP 222
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L L+ L NQ+SD P LG+LT L+ LSL N +I + L L NL LDL+ N
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-KDIGT-LASLTNLTDLDLANN 249
Query: 163 EFNGTVRDKLLPPEIGELSLLEI-FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
+ + L P G L E+ + S P L+ L L+ L+L+EN L+
Sbjct: 250 QISN------LAPLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS 299
Query: 222 PKAIGELRKLGILNL 236
P I L+ L L L
Sbjct: 300 P--ISNLKNLTYLTL 312
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L+ S N +
Sbjct: 115 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSN--QV 163
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 164 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 312
Query: 160 SGNEF 164
N
Sbjct: 313 YFNNI 317
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 385
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L L+ L NQ+SD P LG+LT L+ LSL N + L L NL LDL+ N
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 248
Query: 163 EFNGTVRDKLLPPEIGELSLLEI-FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
+ + L P G L E+ + S P L+ L L+ L+L+EN L+
Sbjct: 249 QISN------LAPLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS 298
Query: 222 PKAIGELRKLGILNL 236
P I L+ L L L
Sbjct: 299 P--ISNLKNLTYLTL 311
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L+ +
Sbjct: 115 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFGN---QV 162
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 163 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 211
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 311
Query: 160 SGNEF 164
N
Sbjct: 312 YFNNI 316
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 344 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 384
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L L+ L NQ+SD P LG+LT L+ LSL N + L L NL LDL+ N
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 248
Query: 163 EFNGTVRDKLLPPEIGELSLLEI-FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221
+ + L P G L E+ + S P L+ L L+ L+L+EN L+
Sbjct: 249 QISN------LAPLSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS 298
Query: 222 PKAIGELRKLGILNL 236
P I L+ L L L
Sbjct: 299 P--ISNLKNLTYLTL 311
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L+ +
Sbjct: 115 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFGN---QV 162
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 163 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 211
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 311
Query: 160 SGNEF 164
N
Sbjct: 312 YFNNI 316
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 344 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 384
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L L+QLS NQ++D P L LT LE L + SN + S L KL NL++L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSS-PSCSITGPLPEE---LSKLKFLSMLDLSEN 215
+ N +I +++ L I ++ S+ G ++ L+ L L+ LDL+ N
Sbjct: 203 TNN-------------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 249
Query: 216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENL 255
+ P + L KL L LG+ Q++ P A L NL
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L S N +
Sbjct: 115 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSN--QV 163
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 164 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 312
Query: 160 SGNEF 164
N
Sbjct: 313 YFNNI 317
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 385
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 35/185 (18%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV--LTQLETLSLGSNSFTGE-IP 145
QN + + S LKRL+ L L N L +F L ++ LETL + NS
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421
Query: 146 SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205
+++ L+LS N G+V + LPP++
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVF-RCLPPKV---------------------------- 452
Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNAL 265
+LDL N + S+PK + L+ L LN+ S QL + +L + L N
Sbjct: 453 --KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
Query: 266 SGSLP 270
+ P
Sbjct: 510 DCTCP 514
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L L+QLS NQ++D P L LT LE L + SN + S L KL NL++L
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSS-PSCSITGPLPEE---LSKLKFLSMLDLSEN 215
+ N +I +++ L I ++ S+ G ++ L+ L L+ LDL+ N
Sbjct: 203 TNN-------------QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 249
Query: 216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENL 255
+ P + L KL L LG+ Q++ P A L NL
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 288
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L S N +
Sbjct: 115 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSN--QV 163
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 164 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 312
Query: 160 SGNEF 164
N
Sbjct: 313 YFNNI 317
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG 142
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 385
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGT 167
L L +NQ++ P L L+ L LGSN G +P L L LDL N+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-- 101
Query: 168 VRDKLLPPEIGE--LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK 223
+LP + + + L E+F C+ LP + +L L+ L L +N LK S+P
Sbjct: 102 ----VLPSAVFDRLVHLKELFM--CCNKLTELPRGIERLTHLTHLALDQNQLK-SIPH 152
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
+L LK+L LG NQL LTQL L LG+N T + +L +LK L +
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 162 NEF 164
N+
Sbjct: 122 NKL 124
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L +LK+L L NQL LT L+TLSL +N +L L+T+ L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 163 EFN 165
+F+
Sbjct: 190 QFD 192
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
+L +L +L LG NQL LT+L+ L L +N KL NL+TL LS
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSP-SCS------ITGPLPEELSKLKFLSMLDLS 213
N+ +G+L + +F + CS ++ + E +K+K + +L
Sbjct: 164 TNQLQSVPHGAF--DRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLH 221
Query: 214 ENP--LKCSVPKAI 225
E+P + CS K +
Sbjct: 222 ESPDGVTCSDGKVV 235
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L +L L+L NQL LT+L TL L +N L L L L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 163 EFN---GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ V D+L + L+ ++ S P+ + KL L L LS N L+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--------FDKLTNLQTLSLSTNQLQ- 168
Query: 220 SVPK-AIGELRKLGILNLGSTQLNGS 244
SVP A L KL + L Q + S
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
+L L L L NQL+ LTQL+ L LG N +L LK L L+
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 161 GNEFN---GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217
N+ DKL + LS ++ S P + + L KL+ +++ N
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-----DRLGKLQTITLFG---NQF 191
Query: 218 KCS 220
CS
Sbjct: 192 DCS 194
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L +LK+L L NQL LT L+TLSL +N +L L+T+ L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 163 EFN 165
+F+
Sbjct: 190 QFD 192
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
+L +L +L LG NQL LT+L+ L L +N KL NL+TL LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 162 NEFNGTVRDKLLPPEIGELSLLEIFSSP-SCS------ITGPLPEELSKLKFLSMLDLSE 214
N+ +G+L + +F + CS ++ + E +K+K + +L E
Sbjct: 165 NQLQSVPHGAF--DRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNLHE 222
Query: 215 NP--LKCSVPKAI 225
+P + CS K +
Sbjct: 223 SPDGVTCSDGKVV 235
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L +L L+L NQL LT+L TL L +N L L L L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 163 EFN---GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ V D+L + L+ ++ S P+ + KL L L LS N L+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--------FDKLTNLQTLSLSTNQLQ- 168
Query: 220 SVPK-AIGELRKLGILNLGSTQLNGSIPAELGKCENLM 256
SVP A L KL + L Q + S +CE L
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQFDCS------RCETLY 200
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161
+L L L L NQL+ LTQL+ L LG N +L LK L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 162 NEFN---GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK 218
N+ DKL + LS ++ S P + + L KL+ +++ N
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-----DRLGKLQTITLFG---NQFD 192
Query: 219 CS 220
CS
Sbjct: 193 CS 194
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSL-GSNSFTGEIPSELGKLKNLKTLDLSGNE- 163
LK L L N + + LG L QLE L SN S L+NL LD+S
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 164 ---FNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKC 219
FNG LS LE+ S LP+ ++L+ L+ LDLS+ L+
Sbjct: 434 RVAFNGI---------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE 271
P A L L +LN+ S QL + +L + L N S P
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
L +L L NQL P LT+L LSLG N KL +LK L L N+
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS 220
++ EL L++ ++ + + L KLK ML L ENP C+
Sbjct: 171 RVPEGAF--DKLTELKTLKLDNNQLKRVPEGAFDSLEKLK---MLQLQENPWDCT 220
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 98 RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL 157
R +L +L LSLG N+L LT L+ L L +N KL LKTL
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 158 DLSGNEF 164
L N+
Sbjct: 187 KLDNNQL 193
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
K+L L N+LS LT+L L L N +LKNL+TL ++ N+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
LP IG +F +L L+ L L N LK P+
Sbjct: 100 ------LP--IG------VF---------------DQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 227 ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPE----QLSELPVL 279
L KL L+LG +L K +L + L N L +PE +L+EL L
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTL 186
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 7/146 (4%)
Query: 97 SRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKT 156
S+ L +L+ L L +N+L L LETL + N +L NL
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 157 LDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSEN 215
L L N+ K LPP + + + S + LP+ + KL L L L N
Sbjct: 114 LRLDRNQL------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 216 PLKCSVPKAIGELRKLGILNLGSTQL 241
LK A +L +L L L + QL
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 93 FGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLK 152
F + +++SN K L + L N++S +TQL TL L N P LK
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102
Query: 153 NLKTLDLSGNEFN 165
+L+ L L GN+ +
Sbjct: 103 SLRLLSLHGNDIS 115
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 148 LGKLKNLKTLDLSGNEF-NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
L L L+ L+L GN F +GT+ L +G L E+ SC + + L
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSL---EVLILSSCGLLSIDQQAFHSLGK 498
Query: 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242
+S +DLS N L C ++ L+ + LNL + +N
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSIN 533
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL 207
L KL NL+TLDLS N +I +S CS+ +L L L
Sbjct: 343 LEKLGNLQTLDLSHN---------------------DIEASDCCSL------QLKNLSHL 375
Query: 208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LSCNALS 266
L+LS N +A E +L +L+L T+L+ + P + + + V+ L+ L
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
Query: 267 GSLPEQLSELPVL 279
S L+ LPVL
Sbjct: 436 TSNQHLLAGLPVL 448
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 201
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 150 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 202
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 224
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 204
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 204
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N + L LKNL L+L
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 202
Query: 160 SGNE 163
E
Sbjct: 203 FSQE 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 170 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+SD VP L LT+L+ L L N S+L L LK LD+
Sbjct: 147 LSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHI-----SDLRALCGLKNLDV 199
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 148 LGKLKNLKTLDLSGNEF-NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
L L++L+ L+L GN F +G++ L +G L EI SC++ + L+
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSL---EILILSSCNLLSIDQQAFHGLRN 500
Query: 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQL 241
++ LDLS N L A+ L+ L LN+ S +
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNI 534
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQ---LETLSLGSNSFTGEIPSELGKLKNLKT 156
++ L+ L+ L+L N D S+ +L LE L L S + L+N+
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 157 LDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216
LDLS N G D L + L L + S +I P L L S+++LS NP
Sbjct: 504 LDLSHNSLTGDSMDAL--SHLKGLYL----NMASNNIRIIPPHLLPALSQQSIINLSHNP 557
Query: 217 LKCS 220
L C+
Sbjct: 558 LDCT 561
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 90 NPLFGQLSRQVSNLKRLKQLSLGENQLS--DFVPSQLGVLTQLETLSLGSNSFTGEIPSE 147
NPL ++ K LK L L + +S +F+P + L LE+L LGSN + E
Sbjct: 90 NPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIP--VHNLENLESLHLGSNHISSINLPE 147
Query: 148 LGKLKNLKTLDLSGNEFNGTVR 169
+NLK LD N + R
Sbjct: 148 NFPTQNLKVLDFQNNAIHYISR 169
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
R+++L L L+ +PS + + L+ L L +NSF +L+ L + GN
Sbjct: 276 FTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
Query: 163 ----EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK 218
+ +KL + +LS +I +S C++ +L L+ L L+LS N
Sbjct: 335 MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL------QLKNLRHLQYLNLSYNEPL 388
Query: 219 CSVPKAIGELRKLGILNLGSTQLNGSIP 246
+A E +L +L++ T L+ P
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFN 165
LK L+L N+LS T L L L SNS + KNL LDLS N +
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 166 GTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF-----LSMLDLSENPLKCS 220
T ++G LE + L +L+F L LDLS NPLK
Sbjct: 135 ST--------KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEF 186
Query: 221 VPKAIGELRKLGILNLGSTQLNGSIPAEL 249
P + KL L L + QLN + +L
Sbjct: 187 SPGCFQTIGKLFALLLNNAQLNPHLTEKL 215
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSL-GSNSFTGEIPSELGKLKNLKTLDLSGNE- 163
LK L L N + + LG L QLE L SN S L+NL LD+S
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 164 ---FNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKC 219
FNG LS LE+ S LP+ ++L+ L+ LDLS+ L+
Sbjct: 434 RVAFNGI---------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LSCNALSGSLPEQLSELP 277
P A L L +LN+ S+ KC N + V+ S N + S ++L P
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSL-GSNSFTGEIPSELGKLKNLKTLDLSGNE- 163
LK L L N + + LG L QLE L SN S L+NL LD+S
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 164 ---FNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKC 219
FNG LS LE+ S LP+ ++L+ L+ LDLS+ L+
Sbjct: 458 RVAFNGI---------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LSCNALSGSLPEQLSELP 277
P A L L +LN+ S+ KC N + V+ S N + S ++L P
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 154 LKTLDLSGNEF-NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDL 212
L+ L+L GN F G ++ + L LEI C ++ + LK ++ +DL
Sbjct: 451 LQHLNLQGNHFPKGNIQKT---NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAEL 249
S N L S +A+ L+ + LNL S ++ +P+ L
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L LSL +NQ+ VP L LT+L+ L L N S+L L+ LK LD+
Sbjct: 150 LSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI-----SDLRALRGLKNLDV 202
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L LK L+L N+LS T L L L SNS + K KNL TLDLS N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 163 EFNGT 167
+ T
Sbjct: 132 GLSST 136
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L LK L+L N+LS T L L L SNS + K KNL TLDLS N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 163 EFNGT 167
+ T
Sbjct: 137 GLSST 141
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L LK L+L N+LS T L L L SNS + K KNL TLDLS N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 163 EFNGT 167
+ T
Sbjct: 142 GLSST 146
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 151 LKNLKTLDLSGNE----FNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLK 205
L+NL LD+S FNG LS LE+ S LP+ ++L+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM-LSCNA 264
L+ LDLS+ L+ P A L L +LN+ S+ KC N + V+ S N
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNH 234
Query: 265 LSGSLPEQLSELP 277
+ S ++L P
Sbjct: 235 IMTSKKQELQHFP 247
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 28/181 (15%)
Query: 108 QLSLGENQLSDFVPSQLGVLTQLETLSLGSN--SFTGEIPSELGKLKNLKTLDLSGNEFN 165
+L L N+L LTQL LSL SN SF G +LK LDLS FN
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FN 88
Query: 166 G--TVRDKLLPPE-----------IGELSLLEIFSSPSCSITGPLPEELSKLKF------ 206
G T+ L E + ++S +F S I + +++ F
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 207 ---LSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262
L +L ++ N + + +P ELR L L+L QL P +L + +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 263 N 263
N
Sbjct: 209 N 209
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Query: 89 QNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE- 147
+N + L +L LK L +G+N L L LE L+L + T IP+E
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEA 171
Query: 148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSP------------------ 189
L L L L L N +RD + L +LEI P
Sbjct: 172 LSHLHGLIVLRLRHLNINA-IRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229
Query: 190 ---SCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP 246
C++T + L +L L+LS NP+ + EL +L + L QL P
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 247 AELGKCENLMSVMLSCNALS 266
L + +S N L+
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT 309
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 29/135 (21%)
Query: 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG 166
+ L LG+N++ + LE L L N + P L NL+TL L N
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN---- 90
Query: 167 TVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG 226
R KL+P L +F+ L L+ LD+SEN + +
Sbjct: 91 --RLKLIP--------LGVFTG---------------LSNLTKLDISENKIVILLDYMFQ 125
Query: 227 ELRKLGILNLGSTQL 241
+L L L +G L
Sbjct: 126 DLYNLKSLEVGDNDL 140
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGK-LKNLKTLDL 159
S K+L+++ L NQ+S+ P L L +L L N T E+P L + L +L+ L L
Sbjct: 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ N+ N D ++ L+LL ++ + +I S L+ + + L++NP C
Sbjct: 112 NANKINXLRVDAF--QDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFIC 166
Query: 220 SV 221
Sbjct: 167 DC 168
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQL--GVL---TQLETLSLGSNSFT----GEIPSELGK 150
V++ L++L+LG N+L D ++L G+L ++L TL + T G++ L
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL-LEIFSSPSCSITGPLPEELSKL----K 205
++LK L L+GNE G +LL + E LE SCS T S + +
Sbjct: 283 KESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341
Query: 206 FLSMLDLSENPLK 218
FL L +S N L+
Sbjct: 342 FLLELQISNNRLE 354
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGK-LKNLKTLDL 159
S K+L+++ L NQ+S+ P L L +L L N T E+P L + L +L+ L L
Sbjct: 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ N+ N D ++ L+LL ++ + +I S L+ + + L++NP C
Sbjct: 112 NANKINCLRVDAF--QDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLAQNPFIC 166
Query: 220 SV 221
Sbjct: 167 DC 168
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQL--GVL---TQLETLSLGSNSFT----GEIPSELGK 150
V++ L++L+LG N+L D ++L G+L ++L TL + T G++ L
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281
Query: 151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL-LEIFSSPSCSITGPLPEELSKL----K 205
++LK L L+GNE G +LL + E LE SCS T S + +
Sbjct: 282 KESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340
Query: 206 FLSMLDLSENPLK 218
FL L +S N L+
Sbjct: 341 FLLELQISNNRLE 353
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 30/127 (23%)
Query: 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT--GEIPS----------------- 146
LK+L L NQ+SD P L LT+LE LS+ N IPS
Sbjct: 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD 122
Query: 147 ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206
L LKNL+ L + N+ V +G LS LE+ IT L++LK
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVM-------LGFLSKLEVLDLHGNEITN--TGGLTRLKK 173
Query: 207 LSMLDLS 213
++ +DL+
Sbjct: 174 VNWIDLT 180
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 109 LSLGENQLS----DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164
L L N LS ++ P++L T L +L L N + NL+ LDLS N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK--FLSMLDLSENPLKCSVP 222
+ D+ L ++ L +L ++++ + E++++L+ +LS +S P++ +
Sbjct: 101 H--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE--LI 156
Query: 223 KAIGELRKLGILNLGSTQL 241
K +L KL +L+L S +L
Sbjct: 157 KDGNKLPKLMLLDLSSNKL 175
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L +
Sbjct: 120 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGN---QV 167
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 168 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 216
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 316
Query: 160 SGNEF 164
N
Sbjct: 317 YFNNI 321
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT 141
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L LK+L L ENQL LT L L L N KL NL LDL N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 163 EFNGT---VRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
+ V DKL +L L + + S+ + + L+ L + +L+ NP C
Sbjct: 168 QLQSLPEGVFDKL-----TQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN---NPWDC 219
Query: 220 S 220
+
Sbjct: 220 A 220
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
V L L Q++ NQL+D P L LT+L + + +N P L L NL L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 160 SGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC 219
FN + D + L+ LE+ S+ I+ LS L L L +
Sbjct: 119 ----FNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGN---QV 166
Query: 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270
+ K + L L L++ S ++ S + L K NL S++ + N +S P
Sbjct: 167 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 215
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDL 159
+S L +L +L LG NQ+S+ P L LT L L L N E S + LKNL L L
Sbjct: 260 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTL 315
Query: 160 SGNEF 164
N
Sbjct: 316 YFNNI 320
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT 141
++NL + LS G NQ+SD P L LT++ L L ++T
Sbjct: 348 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 387
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 42/222 (18%)
Query: 102 NLKRLKQLSLGENQLS-----------------DFVPSQLGVLTQ----------LETLS 134
NLK L +L L +NQ+ DF +Q+ ++ + L S
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 135 LGSNSFTGEIPSELGKLKN------LKTLDLSGN----EFNGTVRDKLLPPEIGELSLLE 184
L +NS + + GK N L+ LD+SGN + G + + + L L
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 185 IFSSPSC---SITGPLPEELSKLKFLSM--LDLSENPLKCSVPKAIGELRKLGILNLGST 239
+I P + L S+ LDLS + + L+ L +LNL
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 240 QLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIF 281
++N +NL + LS N L LP + +
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 98 RQVSN-----LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF 140
+++SN L +LK L+L +NQ+S +P L L +L+L SN F
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 39/151 (25%)
Query: 92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELG-K 150
LFG+L V +L L NQL+ P+ + ++ L LG N EI +++
Sbjct: 49 LFGRLPHLV-------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG 100
Query: 151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210
L LKTL+L N+ I+ +P L L+ L
Sbjct: 101 LHQLKTLNLYDNQ-----------------------------ISCVMPGSFEHLNSLTSL 131
Query: 211 DLSENPLKCSVPKA-IGELRKLGILNLGSTQ 240
+L+ NP C+ A E + LN G+ +
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAAR 162
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 98 RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL 157
+ L+ LK L L N+++ L+ + LSL N T P L +L TL
Sbjct: 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158
Query: 158 DLSGNEFN 165
+L N FN
Sbjct: 159 NLLANPFN 166
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L L+ LS+G NQ++D P L L++L TL N + P L L NL + L N
Sbjct: 156 LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDN 211
Query: 163 EF 164
+
Sbjct: 212 QI 213
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 226 GELRKLGI--LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFA 282
G LRKLG + G +G + A + + ++ G PEQLSELP ++F
Sbjct: 61 GTLRKLGFEPVATGXPVFDGFLAA--------LRIRFDTDSPEGLTPEQLSELPQIVFG 111
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N+ T E+P+ L L+NL TL L
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 182
Query: 162 N 162
N
Sbjct: 183 N 183
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N+ T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 N 162
N
Sbjct: 182 N 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLD 158
+ L L++L L N+L P L +LE LSL +N T E+P+ L L+NL TL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLL 178
Query: 159 LSGN 162
L N
Sbjct: 179 LQEN 182
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N+ T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 N 162
N
Sbjct: 182 N 182
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N+ T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 N 162
N
Sbjct: 182 N 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 NEF 164
N
Sbjct: 182 NSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLD 158
+ L L++L L N+L P L +LE LSL +N T E+P+ L L+NL TL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLL 178
Query: 159 LSGN 162
L N
Sbjct: 179 LQEN 182
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N+ T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 N 162
N
Sbjct: 182 N 182
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%)
Query: 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160
+L L+QL N+L+ LTQL L L N LK+L + L
Sbjct: 54 DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
Query: 161 GNEFNGTVRD 170
N ++ RD
Sbjct: 114 NNPWDCECRD 123
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLD 158
+ L L++L L N+L P L +LE LSL +N T E+P+ L L+NL TL
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLL 178
Query: 159 LSGN 162
L N
Sbjct: 179 LQEN 182
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
L L +NQ++ P LTQL L L +N T KL L L L+ N+
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 169 R 169
R
Sbjct: 95 R 95
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL 157
L +L +L L NQL+ LTQL LSL N IP G NLK+L
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR--GAFDNLKSL 104
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSG 161
L L++L L N+L P L +LE LSL +N T E+P+ L L+NL TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 162 N 162
N
Sbjct: 182 N 182
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 109 LSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTV 168
L L +NQ++ P LTQL L L +N T KL L L L+ N+
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 169 R 169
R
Sbjct: 103 R 103
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTL 157
L +L +L L NQL+ LTQL LSL N IP G NLK+L
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR--GAFDNLKSL 112
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 102 NLKRLKQLSLGEN-QLSDFVPSQL--GVLTQLETLSLGSNSF-----TGEIPSELGKLKN 153
+LK L+ L L EN + +++ + G L+TL L N TGEI L LKN
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKN 414
Query: 154 LKTLDLSGNEFN 165
L +LD+S N F+
Sbjct: 415 LTSLDISRNTFH 426
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 102 NLKRLKQLSLGEN-QLSDFVPSQL--GVLTQLETLSLGSNSF-----TGEIPSELGKLKN 153
+LK L+ L L EN + +++ + G L+TL L N TGEI L LKN
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKN 388
Query: 154 LKTLDLSGNEFN 165
L +LD+S N F+
Sbjct: 389 LTSLDISRNTFH 400
>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
Length = 320
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNE-FNGTVRD------KLLPPEIGELSLLEIF 186
+L S E P G + KTL + G F+ ++D L+ E + LL
Sbjct: 188 ALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNILSLVTDETVDYLLLH-- 245
Query: 187 SSPSCSITGPLPEE--LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ 240
S I + + +S+ KFL+ +D N S+P + E + G L LGS Q
Sbjct: 246 -QASVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQQ 300
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 103 LKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162
L L+ LS+G Q+SD P L L++L TL N + P L L NL + L N
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205
Query: 163 EF 164
+
Sbjct: 206 QI 207
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 104 KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD-LSGN 162
K L++L + EN+++ S L Q+ + LG+N E G + +K L +
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIA 179
Query: 163 EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP 222
+ N T + LPP + EL L IT L L L+ L LS N +
Sbjct: 180 DTNITTIPQGLPPSLTELHL------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 223 KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267
++ L L+L + +L +P L + + V L N +S
Sbjct: 234 GSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 9/165 (5%)
Query: 104 KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD-LSGN 162
K L++L + EN+++ S L Q+ + LG+N E G + +K L +
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIA 179
Query: 163 EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP 222
+ N T + LPP + EL L IT L L L+ L LS N +
Sbjct: 180 DTNITTIPQGLPPSLTELHL------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 223 KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267
++ L L+L + +L +P L + + V L N +S
Sbjct: 234 GSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,661,833
Number of Sequences: 62578
Number of extensions: 286522
Number of successful extensions: 895
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 285
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)