Query 041406
Match_columns 286
No_of_seqs 248 out of 3086
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.6E-36 1.6E-40 289.0 22.1 272 13-286 22-318 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-28 6.1E-33 236.4 16.2 222 60-286 142-366 (968)
3 KOG4194 Membrane glycoprotein 99.9 5.8E-24 1.3E-28 183.7 1.7 222 59-286 174-426 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.4E-23 3E-28 181.4 3.6 223 59-286 126-351 (873)
5 KOG0444 Cytoskeletal regulator 99.8 4.3E-23 9.3E-28 179.9 -3.5 216 59-286 127-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 4E-23 8.7E-28 180.1 -3.9 225 51-285 71-300 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 8.7E-22 1.9E-26 163.5 -2.7 220 60-286 185-538 (565)
8 KOG0472 Leucine-rich repeat pr 99.8 2.9E-22 6.2E-27 166.3 -7.2 219 59-286 69-307 (565)
9 KOG0617 Ras suppressor protein 99.8 6.7E-22 1.4E-26 146.6 -6.1 164 102-276 31-195 (264)
10 cd00116 LRR_RI Leucine-rich re 99.7 3.6E-19 7.7E-24 152.0 1.3 227 59-286 52-317 (319)
11 PRK15370 E3 ubiquitin-protein 99.7 9.3E-17 2E-21 149.0 17.0 54 14-67 57-130 (754)
12 PLN03210 Resistant to P. syrin 99.7 1.2E-16 2.6E-21 156.8 17.8 219 59-285 612-878 (1153)
13 KOG0617 Ras suppressor protein 99.7 6E-20 1.3E-24 136.2 -4.2 157 85-251 38-194 (264)
14 cd00116 LRR_RI Leucine-rich re 99.7 7.2E-19 1.6E-23 150.1 1.4 227 59-286 24-288 (319)
15 PLN03210 Resistant to P. syrin 99.7 1.7E-16 3.7E-21 155.7 17.1 224 50-286 627-903 (1153)
16 KOG0618 Serine/threonine phosp 99.7 1.8E-19 3.9E-24 163.3 -3.5 215 59-286 242-486 (1081)
17 KOG4237 Extracellular matrix p 99.7 2.6E-19 5.6E-24 148.5 -3.0 234 48-286 53-356 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 7.9E-17 1.7E-21 149.4 10.3 203 59-286 200-425 (754)
19 PRK15387 E3 ubiquitin-protein 99.7 5.4E-16 1.2E-20 143.4 14.1 72 206-286 383-455 (788)
20 PLN03150 hypothetical protein; 99.7 9E-16 1.9E-20 141.4 12.9 148 14-164 366-527 (623)
21 PRK15387 E3 ubiquitin-protein 99.6 5.4E-15 1.2E-19 136.9 13.3 84 181-273 382-465 (788)
22 KOG4237 Extracellular matrix p 99.6 8.2E-17 1.8E-21 133.8 -1.7 207 59-266 92-359 (498)
23 KOG0618 Serine/threonine phosp 99.5 2.3E-16 4.9E-21 143.4 -3.9 220 59-286 220-462 (1081)
24 KOG0532 Leucine-rich repeat (L 99.4 1.6E-14 3.4E-19 125.4 -3.4 190 59-263 76-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.6E-14 3.6E-19 125.3 -3.5 174 85-273 80-253 (722)
26 KOG1909 Ran GTPase-activating 99.4 5E-14 1.1E-18 115.7 -0.8 227 59-286 31-308 (382)
27 PLN03150 hypothetical protein; 99.3 2.8E-12 6E-17 118.4 8.2 104 183-286 420-525 (623)
28 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4.1E-17 113.9 6.4 173 85-270 121-294 (394)
29 COG4886 Leucine-rich repeat (L 99.3 3.7E-12 7.9E-17 112.1 6.0 174 100-286 112-287 (394)
30 KOG1259 Nischarin, modulator o 99.2 3.7E-12 7.9E-17 103.2 2.0 214 59-286 183-409 (490)
31 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 5.9E-16 93.0 5.0 127 124-261 15-148 (175)
32 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.3E-16 93.3 4.2 127 101-237 16-148 (175)
33 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.8E-16 103.6 -0.4 202 59-266 122-339 (505)
34 KOG3207 Beta-tubulin folding c 99.0 2.8E-11 6E-16 102.5 -0.9 163 99-266 141-314 (505)
35 KOG1909 Ran GTPase-activating 99.0 2.7E-11 5.8E-16 99.8 -2.3 207 59-266 59-311 (382)
36 KOG1259 Nischarin, modulator o 99.0 4.5E-11 9.8E-16 96.9 -1.9 132 100-242 280-412 (490)
37 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 69.1 3.5 59 206-264 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.4E-14 67.8 3.8 61 181-241 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 3.9E-10 8.5E-15 99.7 -1.4 144 85-242 77-221 (414)
40 COG5238 RNA1 Ran GTPase-activa 98.8 1.1E-09 2.4E-14 87.7 -0.5 208 59-268 31-287 (388)
41 PF08263 LRRNT_2: Leucine rich 98.7 2.6E-08 5.7E-13 58.0 4.1 38 19-56 2-43 (43)
42 KOG2120 SCF ubiquitin ligase, 98.7 1.7E-10 3.7E-15 93.4 -7.7 209 49-264 127-374 (419)
43 KOG4658 Apoptotic ATPase [Sign 98.6 3.3E-08 7.3E-13 94.0 4.6 95 92-192 559-653 (889)
44 KOG4658 Apoptotic ATPase [Sign 98.6 4E-08 8.7E-13 93.5 3.3 160 102-267 543-731 (889)
45 KOG1859 Leucine-rich repeat pr 98.4 1.7E-09 3.7E-14 97.3 -8.7 126 129-266 165-292 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3E-13 82.6 -3.1 177 59-239 186-373 (419)
47 KOG0531 Protein phosphatase 1, 98.4 2E-08 4.3E-13 88.9 -2.8 172 101-285 69-264 (414)
48 KOG1859 Leucine-rich repeat pr 98.3 2.3E-08 5.1E-13 90.2 -4.4 171 103-286 83-289 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 2.5E-08 5.4E-13 72.0 -4.6 60 181-242 77-136 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.7E-07 3.6E-12 75.5 -1.3 190 77-267 87-317 (388)
51 KOG2982 Uncharacterized conser 98.2 6E-07 1.3E-11 73.2 1.0 195 85-282 76-285 (418)
52 PF12799 LRR_4: Leucine Rich r 98.1 2E-06 4.3E-11 50.1 2.8 36 206-242 2-37 (44)
53 KOG4579 Leucine-rich repeat (L 98.1 1.1E-07 2.4E-12 68.7 -3.4 61 102-164 51-112 (177)
54 KOG1644 U2-associated snRNP A' 98.1 1.1E-05 2.4E-10 62.3 6.1 85 177-262 60-149 (233)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 48.0 3.4 36 230-266 2-37 (44)
56 KOG2982 Uncharacterized conser 98.0 2.1E-06 4.6E-11 70.1 1.4 179 102-285 69-258 (418)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.6E-06 3.6E-11 80.7 0.8 88 179-268 171-265 (699)
58 PRK15386 type III secretion pr 97.9 0.00012 2.7E-09 63.5 9.6 135 100-263 48-187 (426)
59 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 63.8 8.3 134 78-239 48-187 (426)
60 KOG1644 U2-associated snRNP A' 97.8 5.3E-05 1.2E-09 58.6 5.5 103 181-285 42-149 (233)
61 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.8E-10 72.8 2.5 128 152-285 122-259 (699)
62 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.4E-09 58.3 1.7 90 124-218 39-129 (260)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0028 6E-08 46.2 7.4 61 99-161 7-67 (129)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0029 6.3E-08 46.1 6.5 106 122-237 6-111 (129)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00047 1E-08 55.5 2.4 105 148-261 39-151 (260)
66 KOG2123 Uncharacterized conser 96.9 2.8E-05 6E-10 63.2 -4.9 78 179-259 39-123 (388)
67 KOG2123 Uncharacterized conser 96.6 7.2E-05 1.6E-09 60.8 -4.9 99 180-282 18-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0019 4.2E-08 31.3 1.0 21 254-275 1-21 (22)
69 KOG4308 LRR-containing protein 95.8 3.7E-05 8.1E-10 68.8 -11.2 182 85-267 92-304 (478)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.011 2.3E-07 28.6 1.1 12 183-194 2-13 (22)
71 KOG3864 Uncharacterized conser 94.9 0.0038 8.3E-08 48.6 -1.6 81 182-262 102-185 (221)
72 PF13504 LRR_7: Leucine rich r 94.6 0.025 5.5E-07 25.4 1.4 13 254-266 2-14 (17)
73 KOG4308 LRR-containing protein 94.4 0.00017 3.7E-09 64.6 -11.5 180 106-286 89-300 (478)
74 KOG1947 Leucine rich repeat pr 93.4 0.01 2.3E-07 53.4 -2.2 37 180-216 268-306 (482)
75 PF13516 LRR_6: Leucine Rich r 91.7 0.038 8.2E-07 27.2 -0.5 18 253-270 2-19 (24)
76 KOG3864 Uncharacterized conser 90.4 0.034 7.4E-07 43.4 -2.0 83 152-239 101-186 (221)
77 KOG1947 Leucine rich repeat pr 90.3 0.097 2.1E-06 47.1 0.4 114 127-241 187-307 (482)
78 KOG0473 Leucine-rich repeat pr 89.6 0.0075 1.6E-07 48.2 -6.3 87 148-242 38-124 (326)
79 smart00370 LRR Leucine-rich re 89.1 0.4 8.6E-06 23.9 2.0 15 104-118 2-16 (26)
80 smart00369 LRR_TYP Leucine-ric 89.1 0.4 8.6E-06 23.9 2.0 15 104-118 2-16 (26)
81 KOG0473 Leucine-rich repeat pr 87.5 0.03 6.5E-07 44.8 -4.2 80 59-141 43-124 (326)
82 smart00364 LRR_BAC Leucine-ric 81.3 1 2.2E-05 22.6 1.2 18 253-271 2-19 (26)
83 smart00368 LRR_RI Leucine rich 75.6 2.4 5.2E-05 21.6 1.6 15 253-267 2-16 (28)
84 smart00365 LRR_SD22 Leucine-ri 74.5 3.3 7.1E-05 20.8 1.9 14 128-141 2-15 (26)
85 KOG4341 F-box protein containi 72.8 2.4 5.1E-05 37.3 1.8 157 101-260 291-459 (483)
86 KOG4341 F-box protein containi 66.4 2.1 4.6E-05 37.5 0.3 104 179-282 318-432 (483)
87 KOG3763 mRNA export factor TAP 63.3 3.3 7.1E-05 37.7 0.9 62 180-243 217-284 (585)
88 KOG3763 mRNA export factor TAP 57.6 4.5 9.7E-05 36.8 0.7 64 203-268 216-285 (585)
89 KOG4242 Predicted myosin-I-bin 55.0 37 0.0008 30.7 5.8 106 59-164 166-280 (553)
90 smart00367 LRR_CC Leucine-rich 49.7 12 0.00027 18.4 1.3 11 104-114 2-12 (26)
91 TIGR00864 PCC polycystin catio 23.3 56 0.0012 36.3 2.2 33 86-118 1-33 (2740)
92 TIGR00864 PCC polycystin catio 21.0 79 0.0017 35.3 2.7 29 64-92 1-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-36 Score=289.01 Aligned_cols=272 Identities=31% Similarity=0.564 Sum_probs=177.4
Q ss_pred hcCCCChhhHHHHHHHHHhccCCCC-CCCCCCCCCCCCccceEecCC-CEEEEEcCCCCcccccCccccccccc--cccC
Q 041406 13 EADDEQNPDEQSLISFKNALESSHN-LVSWNKTNPHCYWVGVSCQRG-RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLS 88 (286)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~w~~~~~~c~w~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~ 88 (286)
...-..+.|+.||++||+++.++.+ +.+|+...+.|.|.|++|... +|+.|+++++++.|.++..+..+++| |+++
T Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 22 NFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred HccCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence 3444466899999999999976555 889987666699999999864 99999999999999999999999999 9999
Q ss_pred CCCCccccchhhc-CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccc
Q 041406 89 QNPLFGQLSRQVS-NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGT 167 (286)
Q Consensus 89 ~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 167 (286)
+|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 9999888887654 788888888888877665443 3355566666666666555555555566666666665555433
Q ss_pred cCC-------------------CCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCC
Q 041406 168 VRD-------------------KLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL 228 (286)
Q Consensus 168 ~~~-------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 228 (286)
.|. ..+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..++++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 210 0123444445555555555555554455555555555555555555554555555555
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.+++ |+.|++++|
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 5555555555555555555555555555555555555555555555555 555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.8e-28 Score=236.39 Aligned_cols=222 Identities=33% Similarity=0.530 Sum_probs=116.6
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
++.|++++|.+.+.+|..+..+++| |++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 3344444444444444444444454 55555555555555555555555555555555544455555555555555555
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC
Q 041406 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217 (286)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l 217 (286)
|.+.+.+|..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccc-----cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 555545555555555555555555554432 244555555555555555555555555555555555555555555
Q ss_pred CcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 218 KCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 218 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..++ |+.|++++|
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 555555555555555555555555555555555555555555555555555555555555 555555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.8e-24 Score=183.66 Aligned_cols=222 Identities=24% Similarity=0.209 Sum_probs=129.8
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEe--
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLS-- 134 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-- 134 (286)
+++.|+|++|.|+..--.+|..+..| +.|+.|+++...+..|..+++|+.|+|..|+|....-..|.++++|+.|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 56677777776665555556666666 66666666655556666666666666666665433223344444444444
Q ss_pred ----------------------cCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCc
Q 041406 135 ----------------------LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCS 192 (286)
Q Consensus 135 ----------------------l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 192 (286)
|+.|+++..-..++..+++|+.|+++.|.|.... ++++.-.++|++|++++|+
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-----~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-----IDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-----cchhhhcccceeEeccccc
Confidence 4444444322333444444444444444443222 2344444455555555555
Q ss_pred ccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCc---cCCCCCCCCEEEcccCcCcccc
Q 041406 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPA---ELGKCENLMSVMLSCNALSGSL 269 (286)
Q Consensus 193 ~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~ 269 (286)
++...+..|..++.|+.|.++.|.++..--..|..+++|+.|+|+.|.++..+.+ .|.++++|+.|++.+|++. .+
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I 407 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SI 407 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ec
Confidence 5533344444455555555555555422223455667788888888877764432 4667888889999999888 55
Q ss_pred c-hhccCcc-cceEEccCC
Q 041406 270 P-EQLSELP-VLIFAAEKN 286 (286)
Q Consensus 270 ~-~~l~~l~-L~~l~l~~N 286 (286)
| .+|..++ |++|||.+|
T Consensus 408 ~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhccCcccceecCCCC
Confidence 5 4888888 999998876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-23 Score=181.35 Aligned_cols=223 Identities=20% Similarity=0.170 Sum_probs=172.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|.+|.|+..-.+++..++.+ +||+.|.+...--..|..-.++++|+|++|+|+......|..+.+|.+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 68888888888877766777777777 8999998865555666666789999999999998777888889999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
.|+++...+..|.++++|+.|++..|.+.-.. --.|..+++|+.|.+..|++...-...|..+.++++|++..|.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive-----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeeh-----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 99998444457777999999999999875321 2457778888888888888875545567777788888888888
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++..--.++.++++|+.|++++|.|...-++.+...++|++||+++|+++.-.+++|..+. |+.|+|++|
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 7755555667788888888888888776677777778888888888888855555777777 777777766
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.3e-23 Score=179.95 Aligned_cols=216 Identities=31% Similarity=0.479 Sum_probs=156.8
Q ss_pred CEEEEEcCCCCcccccCc-cccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCC-----------------
Q 041406 59 RVIWLVLPTHSLKGPLSP-SLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD----------------- 118 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~-~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----------------- 118 (286)
+...|+|++|+|.. +|. -+.+++-| ||+++|++. .+|..+..+..|+.|.|++|.+..
T Consensus 127 n~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 34445555555542 332 34445554 666666663 455556666666677776665421
Q ss_pred --------CCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406 119 --------FVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190 (286)
Q Consensus 119 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 190 (286)
.+|..+..+.+|+.+|+|+|.+. .+|+.+.++++|+.|++++|.++. +........+|++|+++.
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite------L~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE------LNMTEGEWENLETLNLSR 277 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee------eeccHHHHhhhhhhcccc
Confidence 24556666677777777777776 677777777888888888887753 334555667778888888
Q ss_pred CcccccCChhccCCCCCCEEEcccCCCC-cccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc
Q 041406 191 CSITGPLPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269 (286)
Q Consensus 191 n~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 269 (286)
|+++ .+|..+.++++|+.|.+.+|+++ ..+|..++++.+|+.+..++|.+. ..|..++.+..|+.|.+++|++. .+
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ec
Confidence 8877 67888888888888888888775 347888888888888888888887 88888999999999999999988 89
Q ss_pred chhccCcc-cceEEccCC
Q 041406 270 PEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 270 ~~~l~~l~-L~~l~l~~N 286 (286)
|+.+.-++ |++||+..|
T Consensus 355 PeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhhhhcCCcceeeccCC
Confidence 99999999 999999876
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4e-23 Score=180.13 Aligned_cols=225 Identities=28% Similarity=0.384 Sum_probs=144.6
Q ss_pred cceEecCCCEEEEEcCCCCccc-ccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccC
Q 041406 51 VGVSCQRGRVIWLVLPTHSLKG-PLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127 (286)
Q Consensus 51 ~gv~c~~~~l~~l~l~~~~l~~-~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 127 (286)
.|.-.+-+++++++++.|++.. -+|+.+..+..| +|+++|.+. ..|..+...+++-+|+|++|+|..+...-|.++
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence 3433334477888888888764 478888888888 899999884 678888888888889999998887444556788
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-ccCChhccCCCC
Q 041406 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKF 206 (286)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~~~~ 206 (286)
+.|-+||+|+|++. .+|+.+..+.+|+.|++++|++.-.. -..+..+++|+.|.+++.+-+ ..+|.++..+.+
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-----LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ-----LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH-----HhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 88888999999887 77877888888888888888764211 012223444555555554432 234555555555
Q ss_pred CCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406 207 LSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
|..+|++.|.+. .+|+.+.++++|+.|+|++|+|+ .+....+.+.+|+.|+++.|+++ .+|.++++++ |+.|...+
T Consensus 224 L~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 224 LRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence 555555555555 45555555555555555555555 33333444555555555555555 5555555555 55554443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=8.7e-22 Score=163.46 Aligned_cols=220 Identities=30% Similarity=0.428 Sum_probs=139.5
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCcc---------------------ccchhh-cCCCCCCEEEccCCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFG---------------------QLSRQV-SNLKRLKQLSLGENQ 115 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~---------------------~~~~~l-~~l~~L~~L~l~~n~ 115 (286)
++.+|...|-+ +.+|+.++.+..+ ++++.|++.. .+|++. ..++++..||+..|.
T Consensus 185 L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 185 LKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred HHhcccchhhh-hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc
Confidence 34444444433 3667777777776 6666665521 244443 477888888999988
Q ss_pred CCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccc---cCCC---------------------
Q 041406 116 LSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGT---VRDK--------------------- 171 (286)
Q Consensus 116 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~--------------------- 171 (286)
+++ .|..++.+.+|.+||+++|.++ .+|..++++ +|+.|.+.+|++... +...
T Consensus 264 lke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 LKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 887 6788888889999999999998 778888888 889998888876411 0000
Q ss_pred --------------------------------------------------------------------------------
Q 041406 172 -------------------------------------------------------------------------------- 171 (286)
Q Consensus 172 -------------------------------------------------------------------------------- 171 (286)
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence
Q ss_pred -----CCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC
Q 041406 172 -----LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP 246 (286)
Q Consensus 172 -----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 246 (286)
.+|..++.+++|..|++++|-+. .+|..++.+..|+.++++.|.+. .+|..+..+..++.+..++|++....+
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence 34445555566666666665554 55655666666666666666654 444444433334444444444442222
Q ss_pred ccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 247 AELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 247 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+.+.++.+|..||+.+|.+. .+|+.++++. +++|.+++|
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence 33566667777777777776 6777777777 777777765
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=2.9e-22 Score=166.32 Aligned_cols=219 Identities=31% Similarity=0.462 Sum_probs=171.1
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
.++.+++.+|.+. .+|++++++..+ ++.++|++. .+|+.++.+.++++++.++|.+.. .++.++.+..+..++-.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcc
Confidence 4788888888887 678889988888 889999884 678888899999999999998877 66677888888888888
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCC-----------------CCCCccccCCCCCCEEEccCCcccccCCh
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD-----------------KLLPPEIGELSLLEIFSSPSCSITGPLPE 199 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 199 (286)
+|+++ ..|..+.++.++..+++.+|.+....+. ..+|..++.+.+|+-|++.+|++. .+|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-
Confidence 88887 6666665555555555555554321110 146777777888888888888877 556
Q ss_pred hccCCCCCCEEEcccCCCCcccchhhh-CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCccc
Q 041406 200 ELSKLKFLSMLDLSENPLKCSVPKAIG-ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELPV 278 (286)
Q Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~L 278 (286)
.|..+..|.+++++.|.+. .+|.... +++++.+|+++.|++. +.|..++-+.+|++||+++|.++ ..|.+++++.|
T Consensus 223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccccee
Confidence 5777777888888888776 5665544 8899999999999998 88988888999999999999999 78888998888
Q ss_pred ceEEccCC
Q 041406 279 LIFAAEKN 286 (286)
Q Consensus 279 ~~l~l~~N 286 (286)
++|.+.||
T Consensus 300 ~~L~leGN 307 (565)
T KOG0472|consen 300 KFLALEGN 307 (565)
T ss_pred eehhhcCC
Confidence 88888776
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=6.7e-22 Score=146.59 Aligned_cols=164 Identities=30% Similarity=0.560 Sum_probs=106.1
Q ss_pred CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS 181 (286)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 181 (286)
.+.+++.|.+++|.++. .|+.+..+.+|+.|.+++|++. .+|..++.+++|+.|+++-|++. .+|.+|+.++
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------~lprgfgs~p 102 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------ILPRGFGSFP 102 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh------cCccccCCCc
Confidence 34555566666666665 4555666666666666666666 66666666666666666666653 3466666666
Q ss_pred CCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 182 LLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 182 ~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
.|+.||+++|++. ..+|..|..+..|+.|.++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 6777777666664 235665656666666777777765 56666677777777777777666 56666666777777777
Q ss_pred ccCcCccccchhccCc
Q 041406 261 SCNALSGSLPEQLSEL 276 (286)
Q Consensus 261 ~~n~l~~~~~~~l~~l 276 (286)
++|+++ .+|+.+.++
T Consensus 181 qgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 181 QGNRLT-VLPPELANL 195 (264)
T ss_pred ccceee-ecChhhhhh
Confidence 777766 555555443
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.6e-19 Score=152.02 Aligned_cols=227 Identities=26% Similarity=0.300 Sum_probs=143.8
Q ss_pred CEEEEEcCCCCccc------ccCccccccccc--cccCCCCCccccchhhcCCCC---CCEEEccCCCCCCC----Cccc
Q 041406 59 RVIWLVLPTHSLKG------PLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKR---LKQLSLGENQLSDF----VPSQ 123 (286)
Q Consensus 59 ~l~~l~l~~~~l~~------~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~----~~~~ 123 (286)
.++.++++++.+.+ .++..+..++++ +++++|.+.+..+..+..+.+ |++|++++|.+... +...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 47777887776652 233445556666 777887776655555555444 88888888877632 2233
Q ss_pred cccC-CCCCEEecCCCCCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc--
Q 041406 124 LGVL-TQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-- 196 (286)
Q Consensus 124 ~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-- 196 (286)
+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+... ..++..+..+++|++|++++|.+.+.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH-HHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 4455 7788888888877732 23345566778888888887764210 11234455567888888888877632
Q ss_pred --CChhccCCCCCCEEEcccCCCCcccchhhh-----CCCCCCEEEcccccccc----cCCccCCCCCCCCEEEcccCcC
Q 041406 197 --LPEELSKLKFLSMLDLSENPLKCSVPKAIG-----ELRKLGILNLGSTQLNG----SIPAELGKCENLMSVMLSCNAL 265 (286)
Q Consensus 197 --~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l 265 (286)
++..+..+++|++|++++|.+++.....+. ..++|++|++++|.+++ .+...+..+++|+++++++|.+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 334456677788888888887753333222 23678888888887762 2334455567888888888888
Q ss_pred ccc----cchhccCc-c-cceEEccCC
Q 041406 266 SGS----LPEQLSEL-P-VLIFAAEKN 286 (286)
Q Consensus 266 ~~~----~~~~l~~l-~-L~~l~l~~N 286 (286)
+.. +.+.+... + ++++++.+|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 291 GEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred cHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 743 44455555 4 777777664
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=9.3e-17 Score=148.97 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=37.5
Q ss_pred cCCCChhhHHHHHHHHHhccCCCCCCC----CCCCCCCCCccc----------------eEecCCCEEEEEcCC
Q 041406 14 ADDEQNPDEQSLISFKNALESSHNLVS----WNKTNPHCYWVG----------------VSCQRGRVIWLVLPT 67 (286)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----w~~~~~~c~w~g----------------v~c~~~~l~~l~l~~ 67 (286)
.+.++..|+..++++.+.+..|+...+ |++.++.|.-.. |.|....++.+.+.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g 130 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTE 130 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccc
Confidence 567788899999999999988776444 887766674322 556555555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=1.2e-16 Score=156.82 Aligned_cols=219 Identities=20% Similarity=0.255 Sum_probs=115.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++.++.+. .++..+..+++| ++++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 5666677666665 355556666666 66766654455553 5666777777777766555566666777777777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCC---------------CCCCccc------------------------
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD---------------KLLPPEI------------------------ 177 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---------------~~~~~~~------------------------ 177 (286)
+|.....+|..+ ++++|+.|++++|...+..|. ..+|..+
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence 664444555443 455555555555432211110 0111110
Q ss_pred ------cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406 178 ------GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK 251 (286)
Q Consensus 178 ------~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 251 (286)
...++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---
Confidence 112355666666665555566666666666666666654333444433 3444555555444322222221
Q ss_pred CCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406 252 CENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 252 ~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
.++|++|++++|.++ .+|.++..++ |+.|++++
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 134555555555555 4555555555 55555543
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=6e-20 Score=136.25 Aligned_cols=157 Identities=31% Similarity=0.521 Sum_probs=116.5
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
+.+++|.++ .+|..+..+.+|+.|++++|+++. .|..+..+++|+.|.++-|++. .+|..|+.++.|+.||++.|++
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 556666654 344456677777777777777776 6667777777777777777776 7777777777788888777777
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
... .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|++++|.++ .
T Consensus 115 ~e~----~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 115 NEN----SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccc----cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 542 36777777778888888888887 67777888888888888888776 67888888888888888888887 5
Q ss_pred CCccCCC
Q 041406 245 IPAELGK 251 (286)
Q Consensus 245 ~~~~~~~ 251 (286)
+|..++.
T Consensus 188 lppel~~ 194 (264)
T KOG0617|consen 188 LPPELAN 194 (264)
T ss_pred cChhhhh
Confidence 6655544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=7.2e-19 Score=150.13 Aligned_cols=227 Identities=27% Similarity=0.292 Sum_probs=167.2
Q ss_pred CEEEEEcCCCCcccc----cCccccccccc--cccCCCCCc------cccchhhcCCCCCCEEEccCCCCCCCCcccccc
Q 041406 59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQNPLF------GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV 126 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (286)
+++.++++++.++.. ++..+...+.+ ++++++.+. ..++..+..+++|++|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 589999999998643 44455566656 788887775 234566778899999999999998666666666
Q ss_pred CCC---CCEEecCCCCCCC----CCCcccCCC-CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc--
Q 041406 127 LTQ---LETLSLGSNSFTG----EIPSELGKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-- 196 (286)
Q Consensus 127 l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-- 196 (286)
+.. |++|++++|.+.+ .+...+..+ ++|++|++++|.+++... ..++..+..+.+|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC-EALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-HHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 655 9999999998873 223345566 899999999999874321 12345677778999999999998842
Q ss_pred --CChhccCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccCC-----CCCCCCEEEcccCcC
Q 041406 197 --LPEELSKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAELG-----KCENLMSVMLSCNAL 265 (286)
Q Consensus 197 --~p~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l 265 (286)
++..+...++|++|++++|.+++.. +..+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3344556679999999999987443 34556788999999999988853222221 247899999999998
Q ss_pred cc----ccchhccCcc-cceEEccCC
Q 041406 266 SG----SLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 266 ~~----~~~~~l~~l~-L~~l~l~~N 286 (286)
+. .+++.+..++ |+++++++|
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCC
Confidence 72 3445667778 999999887
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.7e-16 Score=155.67 Aligned_cols=224 Identities=23% Similarity=0.241 Sum_probs=158.1
Q ss_pred ccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccC
Q 041406 50 WVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVL 127 (286)
Q Consensus 50 w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 127 (286)
|.|+.. -.+++.++++++...+.+| .+..+++| |++++|.....+|..++.+++|+.|++++|.....+|..+ .+
T Consensus 627 ~~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 555432 2378899998876555565 47777788 8888887777888888888889999888876444455544 56
Q ss_pred CCCCEEecCCCCCCCCCC--------------------cccC------------------------------CCCCCCEE
Q 041406 128 TQLETLSLGSNSFTGEIP--------------------SELG------------------------------KLKNLKTL 157 (286)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~--------------------~~l~------------------------------~l~~L~~L 157 (286)
++|+.|++++|.....+| ..+. ..++|+.|
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 666666666654332222 2110 01234445
Q ss_pred EccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406 158 DLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG 237 (286)
Q Consensus 158 ~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 237 (286)
++++|...+ .+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|+++
T Consensus 784 ~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 784 FLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred eCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 555444322 367889999999999999987666778766 6889999999998655455543 4679999999
Q ss_pred cccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 238 STQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 238 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+|.++ .+|..+..+++|+.|++++|.-...+|..+..++ |+.++++++
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 99998 7888889999999999998643336787778888 888887653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.8e-19 Score=163.26 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=153.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.++++.+++++ +|+.++.+.++ ++..+|.+ ..+|..+...++|+.|....|.+.. +|....++++|++|++.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence 56666666666653 34556666666 66666666 3455555556666666666666655 55566667777777777
Q ss_pred CCCCCCCCCccc--------------------------CCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406 137 SNSFTGEIPSEL--------------------------GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190 (286)
Q Consensus 137 ~n~l~~~~~~~l--------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 190 (286)
.|.+. .+|+.+ ...+.|+.|.+.+|.+++.. -..+-++++|+.|++++
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-----~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-----FPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-----hhhhccccceeeeeecc
Confidence 77765 444321 01234566666777766433 24567788999999999
Q ss_pred CcccccCC-hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc
Q 041406 191 CSITGPLP-EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL 269 (286)
Q Consensus 191 n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 269 (286)
|++. .+| ..+.++..|++|++++|.++ .+|..+..++.|++|...+|.+. .+| .+..++.|+.+|++.|+++...
T Consensus 393 NrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 393 NRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred cccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 9998 455 45788999999999999998 88999999999999999999998 778 6888999999999999998543
Q ss_pred chhccCcc-cceEEccCC
Q 041406 270 PEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 270 ~~~l~~l~-L~~l~l~~N 286 (286)
.+.-..-| |++||+++|
T Consensus 469 l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhCCCcccceeeccCC
Confidence 33222237 999999998
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=2.6e-19 Score=148.50 Aligned_cols=234 Identities=20% Similarity=0.191 Sum_probs=146.5
Q ss_pred CCccceEecCC----CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccC-CCCCCCC
Q 041406 48 CYWVGVSCQRG----RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGE-NQLSDFV 120 (286)
Q Consensus 48 c~w~gv~c~~~----~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~ 120 (286)
|+-.|.+-.+. ..+.|+|..|+|+...+.+|..++.| +|++.|.|+..-|++|.++.++..|-+.+ |.|+...
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 55455444433 67899999999997777789999999 99999999999999999998888877666 8888754
Q ss_pred ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC---------
Q 041406 121 PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC--------- 191 (286)
Q Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n--------- 191 (286)
...|.++..++.|.+.-|.+.....+.|..++++..|.+-+|.+..... ..+..+..++.+.+..|
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-----~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-----GTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-----ccccchhccchHhhhcCccccccccc
Confidence 4556666555555554444443333334444444444443333321000 01111111111111111
Q ss_pred ----------------------------------------------------cccccCC-hhccCCCCCCEEEcccCCCC
Q 041406 192 ----------------------------------------------------SITGPLP-EELSKLKFLSMLDLSENPLK 218 (286)
Q Consensus 192 ----------------------------------------------------~~~~~~p-~~~~~~~~L~~L~l~~n~l~ 218 (286)
...+..| ..|+.+++|++|++++|.++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 1111222 24667777777888888777
Q ss_pred cccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 219 CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 219 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
..-+.+|.....++.|.|..|++...-...|.++..|+.|++.+|+|+...|-+|..+. |..+++-.|
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 66666777777777777777777644445567777777788888877766666777777 777766554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.9e-17 Score=149.44 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
.++.|++++|.++ .+|..+. .+| |++++|.+. .+|..+. ++|+.|++++|.+.. +|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECc
Confidence 5666777777666 3444333 245 666666664 3454333 356677777776664 444432 367777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCC----------------CCCccccCCCCCCEEEccCCcccccCChh
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK----------------LLPPEIGELSLLEIFSSPSCSITGPLPEE 200 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 200 (286)
+|+++ .+|..+. .+|+.|++++|.++.. |.. .+|..+ .++|+.|++++|.+++ +|..
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChh
Confidence 77776 4555443 3677777777766531 100 011111 1345555666655552 4443
Q ss_pred ccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhc----cCc
Q 041406 201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL----SEL 276 (286)
Q Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~l 276 (286)
+. ++|+.|++++|.++ .+|..+ .++|++|++++|.++ .+|..+. ..|+.|++++|++. .+|..+ ..+
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 32 45666666666665 445443 246666666666666 4444332 24666667777666 444433 334
Q ss_pred c-cceEEccCC
Q 041406 277 P-VLIFAAEKN 286 (286)
Q Consensus 277 ~-L~~l~l~~N 286 (286)
+ +..+++.+|
T Consensus 415 ~~l~~L~L~~N 425 (754)
T PRK15370 415 PQPTRIIVEYN 425 (754)
T ss_pred CCccEEEeeCC
Confidence 5 677777765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=5.4e-16 Score=143.40 Aligned_cols=72 Identities=32% Similarity=0.334 Sum_probs=40.9
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEcc
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAE 284 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~ 284 (286)
+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|+.+..++ ++.|+++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 4555555555554 23322 234556666666655 34432 234566666666666 5676677777 7777777
Q ss_pred CC
Q 041406 285 KN 286 (286)
Q Consensus 285 ~N 286 (286)
+|
T Consensus 454 ~N 455 (788)
T PRK15387 454 GN 455 (788)
T ss_pred CC
Confidence 66
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=9e-16 Score=141.38 Aligned_cols=148 Identities=26% Similarity=0.442 Sum_probs=116.5
Q ss_pred cCCCChhhHHHHHHHHHhccCCCCCCCCCCCCCCC-----CccceEecCC------CEEEEEcCCCCcccccCccccccc
Q 041406 14 ADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHC-----YWVGVSCQRG------RVIWLVLPTHSLKGPLSPSLFFLS 82 (286)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~------~l~~l~l~~~~l~~~~~~~~~~l~ 82 (286)
...+...|..||+.+|+++..+. ..+|+. ++| .|.|+.|... .++.|+|+++++.|.+|..+..++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~-~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL-RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc-cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 55667789999999999986543 248965 345 7999999632 488999999999988888888888
Q ss_pred cc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCC-CCCCEEEc
Q 041406 83 SL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKL-KNLKTLDL 159 (286)
Q Consensus 83 ~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l 159 (286)
+| |++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 88 8888888888888888888888888888888888788888888888888888888888888776553 45667777
Q ss_pred cCCcc
Q 041406 160 SGNEF 164 (286)
Q Consensus 160 ~~n~~ 164 (286)
.+|..
T Consensus 523 ~~N~~ 527 (623)
T PLN03150 523 TDNAG 527 (623)
T ss_pred cCCcc
Confidence 76654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=5.4e-15 Score=136.86 Aligned_cols=84 Identities=29% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
.+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 46889999999988 45543 357999999999998 56754 346889999999998 78999999999999999
Q ss_pred ccCcCccccchhc
Q 041406 261 SCNALSGSLPEQL 273 (286)
Q Consensus 261 ~~n~l~~~~~~~l 273 (286)
++|++++.++..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 9999999888766
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=8.2e-17 Score=133.79 Aligned_cols=207 Identities=22% Similarity=0.188 Sum_probs=172.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc---cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL---SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l---L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 135 (286)
++++|||+.|+|+..-|.+|..+..+ +..++|+|+..-...|+++..++.|.+.-|.+.......|..++++..|.+
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 89999999999999999999999888 566679998777788899999999999888888877788899999999999
Q ss_pred CCCCCCCCCCc-ccCCCCCCCEEEccCCccccc--cCCC-----------------------------------------
Q 041406 136 GSNSFTGEIPS-ELGKLKNLKTLDLSGNEFNGT--VRDK----------------------------------------- 171 (286)
Q Consensus 136 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~--~~~~----------------------------------------- 171 (286)
..|.+. .++. .+..+..++.+++..|.+-.. .+..
T Consensus 172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 998887 4444 677777777777776662110 0000
Q ss_pred -------------CCC-ccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406 172 -------------LLP-PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG 237 (286)
Q Consensus 172 -------------~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 237 (286)
.-| ..|.++++|+.+++++|.+++.-+..|.....++.|.+..|++...-...|.++..|++|+|+
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 111 236788999999999999998888899999999999999999985555678899999999999
Q ss_pred cccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 238 STQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 238 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+|+|+...|..|....+|.+|++-.|.+.
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCccc
Confidence 99999888989999999999999988875
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-16 Score=143.44 Aligned_cols=220 Identities=26% Similarity=0.342 Sum_probs=159.7
Q ss_pred CEEEEEcCCCCcccccCccccccccccccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN 138 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 138 (286)
+++.|..+.|.+....+.-....-..++++.|.+. .+|+.++.+.+|+.++..+|.+.. +|..+...++|+.+...+|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhh
Confidence 45555555565552222111111111788888875 456888889999999999998865 7777888889999999999
Q ss_pred CCCCCCCcccCCCCCCCEEEccCCccccccCCC-------------------CCCcccc--CCCCCCEEEccCCcccccC
Q 041406 139 SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK-------------------LLPPEIG--ELSLLEIFSSPSCSITGPL 197 (286)
Q Consensus 139 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------~~~~~~~--~l~~L~~L~l~~n~~~~~~ 197 (286)
.+. .+|+.+..+.+|+.|++..|.+....+.. ..| ..+ .++.|+.|++.+|.++...
T Consensus 298 el~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 298 ELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccc
Confidence 888 78888888999999999999875321100 111 111 1345777888888887665
Q ss_pred ChhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCc
Q 041406 198 PEELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSEL 276 (286)
Q Consensus 198 p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 276 (286)
-+.+...++|+.|+++.|.+. .+| ..+.++..|++|+|++|+++ .+|..+..++.|+.|...+|.+. .+| .+..+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhc
Confidence 556777788888888888887 444 45678888888888888888 77787888888888888888888 777 67888
Q ss_pred c-cceEEccCC
Q 041406 277 P-VLIFAAEKN 286 (286)
Q Consensus 277 ~-L~~l~l~~N 286 (286)
+ |+.+|++.|
T Consensus 452 ~qL~~lDlS~N 462 (1081)
T KOG0618|consen 452 PQLKVLDLSCN 462 (1081)
T ss_pred CcceEEecccc
Confidence 9 999999887
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.6e-14 Score=125.45 Aligned_cols=190 Identities=31% Similarity=0.431 Sum_probs=133.3
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
..+..|++.|.+. .+|..++.+..+ +.++.|.+ ..+|..+..+..|++++++.|++.. .|..++.+ -|+.|.++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDL-PLKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhc-CChhhhcC-cceeEEEe
Confidence 3456667777766 567777766666 56666665 3567777888888888888888776 56556555 37777888
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|+++ .+|..++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..++ |..||++.|+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~------slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 88877 77777777778888888888774 35677777788888888888777 5666666554 7778888888
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCC---CCCCCCEEEcccC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELG---KCENLMSVMLSCN 263 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~l~~n 263 (286)
+. .+|-.|.+++.|++|-|.+|.+. ..|..++ ..--.++|+.+-+
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 87 77778888888888888888776 4444332 2233455666655
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.6e-14 Score=125.33 Aligned_cols=174 Identities=30% Similarity=0.464 Sum_probs=152.8
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
.+++.|++ ..+|..+..+-.|+.+.+..|.+.. +|..++.+..|.+++++.|+++ .+|..+..++ |+.|-+++|++
T Consensus 80 aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRF-SELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhcccccc-ccCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 78889988 4778888888889999999999887 7889999999999999999998 8898888877 89999999998
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
+ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|+++ .
T Consensus 156 ~------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 156 T------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred c------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 5 36788888899999999999998 78888999999999999999998 678887754 4899999999999 8
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhc
Q 041406 245 IPAELGKCENLMSVMLSCNALSGSLPEQL 273 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 273 (286)
+|-.|.+|.+|++|-|.+|.+. .-|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 9999999999999999999998 444443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=5e-14 Score=115.66 Aligned_cols=227 Identities=21% Similarity=0.241 Sum_probs=160.1
Q ss_pred CEEEEEcCCCCcccc----cCccccccccc--cccCC---CCCccccc-------hhhcCCCCCCEEEccCCCCCCCCcc
Q 041406 59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQ---NPLFGQLS-------RQVSNLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~---n~~~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~ 122 (286)
.++.|+|++|.+... +...+.+.+.| .+++. -+....+| +++..+++|++++||.|.+....++
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 689999999988743 33345555555 33332 12222333 4556788999999999999876555
Q ss_pred cc----ccCCCCCEEecCCCCCCCC-------------CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406 123 QL----GVLTQLETLSLGSNSFTGE-------------IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185 (286)
Q Consensus 123 ~~----~~l~~L~~L~l~~n~l~~~-------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~ 185 (286)
.| ..+..|++|.+.+|.+... .......-++|+++..++|++. ..+...+...++..+.|+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccce
Confidence 43 4678999999999987621 1122455688999999999874 3333445667788889999
Q ss_pred EEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEcccccccccCCccC-----CCC
Q 041406 186 FSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGSIPAEL-----GKC 252 (286)
Q Consensus 186 L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~ 252 (286)
+.+++|.|.-. +...+..+++|+.||+..|-++.. +...+..+++|+.|++++|.+.......+ ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 99999988622 234577889999999999988743 33455677889999999998875443322 336
Q ss_pred CCCCEEEcccCcCccc----cchhccCcc-cceEEccCC
Q 041406 253 ENLMSVMLSCNALSGS----LPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 253 ~~L~~L~l~~n~l~~~----~~~~l~~l~-L~~l~l~~N 286 (286)
|.|+.|.+.+|.++.. +..++...| |.+|++++|
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 8899999999988742 334566778 999998887
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=2.8e-12 Score=118.44 Aligned_cols=104 Identities=30% Similarity=0.529 Sum_probs=59.0
Q ss_pred CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEccc
Q 041406 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC 262 (286)
Q Consensus 183 L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 262 (286)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555566666666655555555555556666666666655555555555555666666666
Q ss_pred CcCccccchhccCcc--cceEEccCC
Q 041406 263 NALSGSLPEQLSELP--VLIFAAEKN 286 (286)
Q Consensus 263 n~l~~~~~~~l~~l~--L~~l~l~~N 286 (286)
|+++|.+|..+..+. +..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 665555555554432 444444443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=1.9e-12 Score=113.90 Aligned_cols=173 Identities=42% Similarity=0.615 Sum_probs=100.5
Q ss_pred cccCCCCCccccchhhcCCC-CCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406 85 SDLSQNPLFGQLSRQVSNLK-RLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 163 (286)
+++.+|.++. ++....... +|+.|++++|.+.. +|..+..++.|+.|++++|++. .+|......+.|+.|++++|.
T Consensus 121 L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~ 197 (394)
T COG4886 121 LDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197 (394)
T ss_pred EecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCc
Confidence 5566665543 333334442 66666666666655 3344566666666666666666 555544466666666666666
Q ss_pred cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243 (286)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 243 (286)
+.. +|........|+++.+++|.+. ..+..+..+.++..+.+.+|.+. ..+..++.++++++|++++|.++
T Consensus 198 i~~------l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 198 ISD------LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred ccc------CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence 642 3344444455666666666433 34445556666666666666654 33455566666777777777666
Q ss_pred cCCccCCCCCCCCEEEcccCcCccccc
Q 041406 244 SIPAELGKCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (286)
.++. ++...+++.|++++|.+....+
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc-ccccCccCEEeccCccccccch
Confidence 3333 5666667777777766664433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=3.7e-12 Score=112.09 Aligned_cols=174 Identities=33% Similarity=0.523 Sum_probs=132.4
Q ss_pred hcCCCCCCEEEccCCCCCCCCccccccCC-CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLT-QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG 178 (286)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 178 (286)
+..++.++.+++.+|.++. ++....... +|+.|++++|.+. .+|..+..++.|+.|++++|++.. +|....
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~------l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD------LPKLLS 183 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh------hhhhhh
Confidence 4555778888888888887 555566664 8888899888887 666667888888889998888853 345555
Q ss_pred CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 041406 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSV 258 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 258 (286)
..+.|+.|++++|++. .+|........|+++.+++|... ..+..+++++++..+.+.+|++. .++..+..++.++.|
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence 7788888899888888 56665555666888888888543 46677778888888888888876 446667778888899
Q ss_pred EcccCcCccccchhccCcc-cceEEccCC
Q 041406 259 MLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 259 ~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++++|.++ .++. +..+. ++.|++++|
T Consensus 261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNNQIS-SISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cccccccc-cccc-ccccCccCEEeccCc
Confidence 99998888 5555 67777 888888764
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=3.7e-12 Score=103.15 Aligned_cols=214 Identities=21% Similarity=0.197 Sum_probs=101.0
Q ss_pred CEEEEEcCCCC--------cccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCC
Q 041406 59 RVIWLVLPTHS--------LKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128 (286)
Q Consensus 59 ~l~~l~l~~~~--------l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 128 (286)
++..|..++.. +...+|..+..+.++ +.++.+.-.. +.+....-|.|+.+...+..+... +.+-...
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~--~~l~pe~ 259 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV--PSLLPET 259 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc--ccccchh
Confidence 57777766531 223345555556666 6666654321 111112225677776655444321 0111111
Q ss_pred CCCEEecCCC-CCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406 129 QLETLSLGSN-SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL 207 (286)
Q Consensus 129 ~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L 207 (286)
.+....-+.- -.+|..-.....+..|+++|+++|.|+. +.++..-.++++.|++++|.+... ..+..+++|
T Consensus 260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~------iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L 331 (490)
T KOG1259|consen 260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ------IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQL 331 (490)
T ss_pred hhcCccCCCCCccCCceEEecchHhhhhhccccccchhh------hhhhhhhccceeEEeccccceeee--hhhhhcccc
Confidence 1111111100 0111222223334556666666666542 234555556666666666666521 225556666
Q ss_pred CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc-cchhccCcc-cceEEccC
Q 041406 208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS-LPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~-L~~l~l~~ 285 (286)
+.||+++|.++ .+..+-.++-++++|.|++|.+.. + +.++.+-+|..||+++|+|..- -...++++| |+.+.+.+
T Consensus 332 ~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 332 QLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 66666666665 333333455556666666665542 1 2245555666666666665521 112456666 66555554
Q ss_pred C
Q 041406 286 N 286 (286)
Q Consensus 286 N 286 (286)
|
T Consensus 409 N 409 (490)
T KOG1259|consen 409 N 409 (490)
T ss_pred C
Confidence 4
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.7e-11 Score=93.05 Aligned_cols=127 Identities=25% Similarity=0.294 Sum_probs=41.4
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccC-CCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc-
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSELG-KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL- 201 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~- 201 (286)
+.+..++++|++.+|.|+ .+. .++ .+.+|+.|++++|.+... +.+..++.|++|++++|.++. +.+.+
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-------~~l~~L~~L~~L~L~~N~I~~-i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-------EGLPGLPRLKTLDLSNNRISS-ISEGLD 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---------TT----TT--EEE--SS---S--CHHHH
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-------cCccChhhhhhcccCCCCCCc-cccchH
Confidence 344556788888888777 332 344 467788888888877531 345567777777777777773 33333
Q ss_pred cCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEcccccccccCCc----cCCCCCCCCEEEcc
Q 041406 202 SKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNGSIPA----ELGKCENLMSVMLS 261 (286)
Q Consensus 202 ~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~ 261 (286)
..+++|++|++++|.+... .-..++.+++|+.|++.+|.++.. +. .+..+|+|+.||-.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 3467777777777777532 124555677777777777777632 32 23446777776643
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.4e-11 Score=93.31 Aligned_cols=127 Identities=33% Similarity=0.399 Sum_probs=48.3
Q ss_pred cCCCCCCEEEccCCCCCCCCccccc-cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccc-c
Q 041406 101 SNLKRLKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI-G 178 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~ 178 (286)
.+..++++|+|++|.|+.. +.++ .+.+|+.|++++|.++ .+. .+..++.|+.|++++|.++. +.+.+ .
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~------i~~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS------ISEGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-------CHHHHH
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc------cccchHH
Confidence 4445688899999888763 2354 4778899999999888 443 47778889999999998863 23334 3
Q ss_pred CCCCCCEEEccCCccccc-CChhccCCCCCCEEEcccCCCCccc---chhhhCCCCCCEEEcc
Q 041406 179 ELSLLEIFSSPSCSITGP-LPEELSKLKFLSMLDLSENPLKCSV---PKAIGELRKLGILNLG 237 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~ 237 (286)
.+++|++|++++|++... --..+..+++|+.|++.+|+++..- ...+..+|+|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 578899999999988632 1245677888999999998887331 1244578888888743
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-11 Score=103.65 Aligned_cols=202 Identities=22% Similarity=0.245 Sum_probs=86.7
Q ss_pred CEEEEEcCCCCcccccC-ccccccccc--cccCCCCCccc--cchhhcCCCCCCEEEccCCCCCCCCcccc-ccCCCCCE
Q 041406 59 RVIWLVLPTHSLKGPLS-PSLFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLGENQLSDFVPSQL-GVLTQLET 132 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~-~~~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 132 (286)
.++.+.|.++.+..... .....++++ ||++.|-+..- +.....++|+|+.|+++.|.+........ ..+..|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 45555555554431111 133344444 55555544322 11223455555555555555443222111 13445555
Q ss_pred EecCCCCCCCC-CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC--hhccCCCCCCE
Q 041406 133 LSLGSNSFTGE-IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP--EELSKLKFLSM 209 (286)
Q Consensus 133 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~~~~L~~ 209 (286)
|.++.|.++.. +...+..+|+|..|++..|...... ......+..|++|+|++|++.. ++ ...+.++.|+.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-----~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-----ATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee-----cchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 55555555421 1112234555555555555311100 1122234455555555555542 22 22344555555
Q ss_pred EEcccCCCCcc-cchh-----hhCCCCCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCc
Q 041406 210 LDLSENPLKCS-VPKA-----IGELRKLGILNLGSTQLNG-SIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 210 L~l~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
|+++.+.+... .|+. ....++|++|++..|++.. ..-..+..+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55555555421 1111 1234555556555555531 11122334455555555555554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-11 Score=102.46 Aligned_cols=163 Identities=26% Similarity=0.244 Sum_probs=91.1
Q ss_pred hhcCCCCCCEEEccCCCCCCCCc--cccccCCCCCEEecCCCCCCCCCCcc-cCCCCCCCEEEccCCccccccCCCCCCc
Q 041406 99 QVSNLKRLKQLSLGENQLSDFVP--SQLGVLTQLETLSLGSNSFTGEIPSE-LGKLKNLKTLDLSGNEFNGTVRDKLLPP 175 (286)
Q Consensus 99 ~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 175 (286)
....|++++.|+++.|-+....+ .....+++|+.|.++.|++....... -..+++|+.|.+++|.++... +-.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~----V~~ 216 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD----VQW 216 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH----HHH
Confidence 34556666666666665544222 23345666666666666655222111 123566666677666665311 123
Q ss_pred cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEccccccccc-CCcc----
Q 041406 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGS-IPAE---- 248 (286)
Q Consensus 176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~---- 248 (286)
....+++|+.|++..|..-........-++.|+.|||++|.+- ..+ ...+.++.|+.|+++.+.+... +|+.
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 3445667777777777422222223334556777777777765 222 3445677777777777766642 2222
Q ss_pred -CCCCCCCCEEEcccCcCc
Q 041406 249 -LGKCENLMSVMLSCNALS 266 (286)
Q Consensus 249 -~~~~~~L~~L~l~~n~l~ 266 (286)
...+++|++|++..|++.
T Consensus 296 kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhcccccceeeecccCccc
Confidence 234677788888888775
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=2.7e-11 Score=99.84 Aligned_cols=207 Identities=20% Similarity=0.211 Sum_probs=147.2
Q ss_pred CEEEEEcCCC---CcccccCcc-------ccccccc--cccCCCCCccccchh----hcCCCCCCEEEccCCCCCCCCcc
Q 041406 59 RVIWLVLPTH---SLKGPLSPS-------LFFLSSL--SDLSQNPLFGQLSRQ----VSNLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 59 ~l~~l~l~~~---~l~~~~~~~-------~~~l~~l--L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~ 122 (286)
+++..+++.. ++...+|++ +...++| ++||.|-+...-+.. +.++..|++|.+.+|.+...-..
T Consensus 59 ~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~ 138 (382)
T KOG1909|consen 59 ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG 138 (382)
T ss_pred cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH
Confidence 5666666653 233344443 3344566 889999886654433 46788999999999988643222
Q ss_pred c-------------cccCCCCCEEecCCCCCCCC----CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406 123 Q-------------LGVLTQLETLSLGSNSFTGE----IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185 (286)
Q Consensus 123 ~-------------~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~ 185 (286)
. ...-+.|+++....|++... +...+...+.|+.+.+..|.|..... ..+..++..+++|+.
T Consensus 139 ~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~Lev 217 (382)
T KOG1909|consen 139 RLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEV 217 (382)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCccee
Confidence 2 23357899999999988632 22346677899999999998853221 234567788999999
Q ss_pred EEccCCccccc----CChhccCCCCCCEEEcccCCCCcccchhh----h-CCCCCCEEEccccccccc----CCccCCCC
Q 041406 186 FSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSVPKAI----G-ELRKLGILNLGSTQLNGS----IPAELGKC 252 (286)
Q Consensus 186 L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~L~~n~l~~~----~~~~~~~~ 252 (286)
||+.+|.++.. +...+..+++|+.++++.|.+.......+ . ..++|+.|.+.+|.|+.. +...+...
T Consensus 218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred eecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 99999998732 44667888999999999999875544333 2 468999999999998842 22345568
Q ss_pred CCCCEEEcccCcCc
Q 041406 253 ENLMSVMLSCNALS 266 (286)
Q Consensus 253 ~~L~~L~l~~n~l~ 266 (286)
|.|..|++++|++.
T Consensus 298 ~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 298 PDLEKLNLNGNRLG 311 (382)
T ss_pred hhhHHhcCCccccc
Confidence 99999999999993
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=4.5e-11 Score=96.91 Aligned_cols=132 Identities=27% Similarity=0.311 Sum_probs=88.8
Q ss_pred hcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccC
Q 041406 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179 (286)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 179 (286)
..-.+.|+.+++++|.|+. +.++..-.++++.|++++|.+. .+.. +..+++|+.||+++|.++.. ..+-.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~------~Gwh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC------VGWHLK 350 (490)
T ss_pred cchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh------hhhHhh
Confidence 3345667778888887776 4555666778888888888876 3333 67778888888888876532 123335
Q ss_pred CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEccccccc
Q 041406 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
+.+++.|.+++|.+.. -..+.++-+|..||+++|++... -...++++|.|+++.|.+|.+.
T Consensus 351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6677788888877652 23456667778888888877521 1245677788888888888776
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.3e-09 Score=69.06 Aligned_cols=59 Identities=32% Similarity=0.379 Sum_probs=26.4
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 264 (286)
+|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444442222344444444444444444443333444444444555444443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.5e-09 Score=67.76 Aligned_cols=61 Identities=33% Similarity=0.423 Sum_probs=41.5
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQL 241 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 241 (286)
++|++|++++|++....+..|..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766655455667777777777777777655556677777777777777754
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=3.9e-10 Score=99.72 Aligned_cols=144 Identities=30% Similarity=0.372 Sum_probs=87.5
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
+.++.|.+.. +-..+..+.+|+.+++..|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.+
T Consensus 77 l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 77 LNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcc
Confidence 4556666543 223356677788888888877763 32256677888888888877732 2355666678888888877
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
... ..+..+..|+.+++++|.++..-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++
T Consensus 153 ~~~-------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 153 SDI-------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hhc-------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 532 344557777888888887774333 1 4566677777777777651 122223333333344444444
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.76 E-value=1.1e-09 Score=87.70 Aligned_cols=208 Identities=18% Similarity=0.167 Sum_probs=132.8
Q ss_pred CEEEEEcCCCCcccccCc----cccccccc--cccCCC---CCccc-------cchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406 59 RVIWLVLPTHSLKGPLSP----SLFFLSSL--SDLSQN---PLFGQ-------LSRQVSNLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~----~~~~l~~l--L~l~~n---~~~~~-------~~~~l~~l~~L~~L~l~~n~l~~~~~~ 122 (286)
.++.++|+||.+...... .+.+-.+| .+++.- ..... +..++-+||+|+.+++|.|.+....|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 688999999998754333 44455555 444432 11222 335567899999999999999877765
Q ss_pred cc----ccCCCCCEEecCCCCCCCCCCc--------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406 123 QL----GVLTQLETLSLGSNSFTGEIPS--------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184 (286)
Q Consensus 123 ~~----~~l~~L~~L~l~~n~l~~~~~~--------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~ 184 (286)
.+ ..-+.|++|.+++|.+. .+.. ....-+.|+.+.+..|++.. .+.......+.....|+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCce
Confidence 44 45688999999999765 2221 12345789999999988742 11111223344446788
Q ss_pred EEEccCCcccccCC-----hhccCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccC------
Q 041406 185 IFSSPSCSITGPLP-----EELSKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAEL------ 249 (286)
Q Consensus 185 ~L~l~~n~~~~~~p-----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------ 249 (286)
++.+.+|.|.-... ..+..+++|+.||+..|.++... ...+..++.|+.|.+..|.++......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 88888888762211 12345678888888888877432 2334456778888888887764433221
Q ss_pred CCCCCCCEEEcccCcCccc
Q 041406 250 GKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~ 268 (286)
...|+|..|-..+|.+.+.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hcCCCccccccchhhhcCc
Confidence 2257777777777766543
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.69 E-value=2.6e-08 Score=58.00 Aligned_cols=38 Identities=42% Similarity=0.947 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHhccCCC-C-CCCCCCC--CCCCCccceEec
Q 041406 19 NPDEQSLISFKNALESSH-N-LVSWNKT--NPHCYWVGVSCQ 56 (286)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~-~-~~~w~~~--~~~c~w~gv~c~ 56 (286)
++|++||++||+++..++ . +.+|+.+ .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999999644 4 9999987 456999999995
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.7e-10 Score=93.40 Aligned_cols=209 Identities=22% Similarity=0.174 Sum_probs=131.9
Q ss_pred CccceEecCCCEEEEEcCCCCcccc--------------cC----------ccccccc-cc--cccCCCCCccc-cchhh
Q 041406 49 YWVGVSCQRGRVIWLVLPTHSLKGP--------------LS----------PSLFFLS-SL--SDLSQNPLFGQ-LSRQV 100 (286)
Q Consensus 49 ~w~gv~c~~~~l~~l~l~~~~l~~~--------------~~----------~~~~~l~-~l--L~l~~n~~~~~-~~~~l 100 (286)
+|++..-+...-+.+|+.+.+++.. ++ +.+.-++ .+ +|++...++.. +-..+
T Consensus 127 Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iL 206 (419)
T KOG2120|consen 127 RFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGIL 206 (419)
T ss_pred HHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHH
Confidence 3666666655778888888776521 11 1111111 22 67777766543 23445
Q ss_pred cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCC-CCCCCC--cccCCCCCCCEEEccCCccccccCCCCCCccc
Q 041406 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNS-FTGEIP--SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI 177 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 177 (286)
..|++|+.|.+.++++...+...+..-..|+.|+++.+. ++ ... -.+.++..|..|+++.|.+.... +...+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~----Vtv~V 281 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEK----VTVAV 281 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchh----hhHHH
Confidence 677888888888888877666777777888888888764 32 111 13466788888888888764322 12223
Q ss_pred cCC-CCCCEEEccCCccc---ccCChhccCCCCCCEEEcccCC-CCcccchhhhCCCCCCEEEcccccccccCCc---cC
Q 041406 178 GEL-SLLEIFSSPSCSIT---GPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGELRKLGILNLGSTQLNGSIPA---EL 249 (286)
Q Consensus 178 ~~l-~~L~~L~l~~n~~~---~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~ 249 (286)
.+. .+|+.|+++++.-. ..+.--..++++|.+||++.|. ++......|.+++.|++|+++.|.. .+|. .+
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l 359 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL 359 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee
Confidence 332 46778888776432 1122234578889999998764 4444556777889999999988863 3343 35
Q ss_pred CCCCCCCEEEcccCc
Q 041406 250 GKCENLMSVMLSCNA 264 (286)
Q Consensus 250 ~~~~~L~~L~l~~n~ 264 (286)
...|+|.+||+.++-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 667889999888763
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=3.3e-08 Score=94.03 Aligned_cols=95 Identities=28% Similarity=0.389 Sum_probs=69.7
Q ss_pred CccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCC
Q 041406 92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK 171 (286)
Q Consensus 92 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 171 (286)
+.....+.|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+. .+|..+.++.+|.+|++..+.....
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~---- 633 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES---- 633 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccc----
Confidence 33334455777888888888887766668888888888888888888887 7888888888888888877664322
Q ss_pred CCCccccCCCCCCEEEccCCc
Q 041406 172 LLPPEIGELSLLEIFSSPSCS 192 (286)
Q Consensus 172 ~~~~~~~~l~~L~~L~l~~n~ 192 (286)
+|.....+.+|++|.+....
T Consensus 634 -~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 634 -IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred -ccchhhhcccccEEEeeccc
Confidence 24555568888888776554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=4e-08 Score=93.51 Aligned_cols=160 Identities=26% Similarity=0.348 Sum_probs=116.2
Q ss_pred CCCCCCEEEccCCC--CCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccC
Q 041406 102 NLKRLKQLSLGENQ--LSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGE 179 (286)
Q Consensus 102 ~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 179 (286)
.+++|+.|-+..|. +....+..|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|.++.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~------~LP~~l~~ 616 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS------HLPSGLGN 616 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc------ccchHHHH
Confidence 44579999998886 55544556888999999999998877799999999999999999999885 47999999
Q ss_pred CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC--CcccchhhhCCCCCCEEEcccccc----------------
Q 041406 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL--KCSVPKAIGELRKLGILNLGSTQL---------------- 241 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l---------------- 241 (286)
+.+|.+|++..+.....+|.....+++|++|.+-.... +...-..+.++.+|+.+.......
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence 99999999998887656677777799999999865542 222223444555555444322221
Q ss_pred ---------cccCCccCCCCCCCCEEEcccCcCcc
Q 041406 242 ---------NGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 242 ---------~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
....+..+..+.+|+.|.+.++.++.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 00223345566777888887777763
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=1.7e-09 Score=97.25 Aligned_cols=126 Identities=25% Similarity=0.325 Sum_probs=81.1
Q ss_pred CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChh-ccCCCCC
Q 041406 129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEE-LSKLKFL 207 (286)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~~~L 207 (286)
.|.+.+.++|.+. .+..++.-++.++.|++++|+++.. +.+..+++|++||+++|.+. .+|.. ...+ +|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL 234 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence 4555666666665 5556667777778888888877642 46677777888888888776 33432 2223 37
Q ss_pred CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCc
Q 041406 208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~ 266 (286)
+.|.+++|.++ .+ ..+.++++|+.|++++|-+.+.-. ..+..+..|+.|.+.+|.+-
T Consensus 235 ~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77778777775 22 456677777788887776664211 11344566777777777764
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-08 Score=82.58 Aligned_cols=177 Identities=19% Similarity=0.152 Sum_probs=114.1
Q ss_pred CEEEEEcCCCCcccc-cCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCc-cccccCCCCCEE
Q 041406 59 RVIWLVLPTHSLKGP-LSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVP-SQLGVLTQLETL 133 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~-~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L 133 (286)
+++.+||+...++.. +..-+..+..| +.+.++.+.+.+...+.+..+|+.|+++.+. ++.... -.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577888887777632 22234556666 7788888888888888888889999888765 333211 235678888888
Q ss_pred ecCCCCCCCCCCcc-cCC-CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-ccCChhccCCCCCCEE
Q 041406 134 SLGSNSFTGEIPSE-LGK-LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-GPLPEELSKLKFLSML 210 (286)
Q Consensus 134 ~l~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L 210 (286)
++++|.+....-.. +.. -++|+.|+++++.-.-.. ..+..-..+++++.+||+++|... ......+.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 88888766322111 111 356778888877532111 123344556788888998887543 2222345677888888
Q ss_pred EcccCCCCcccchh---hhCCCCCCEEEcccc
Q 041406 211 DLSENPLKCSVPKA---IGELRKLGILNLGST 239 (286)
Q Consensus 211 ~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n 239 (286)
.++.|.. .+|.. +...|+|.+|+.-++
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8888864 34543 356688888887655
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=2e-08 Score=88.92 Aligned_cols=172 Identities=30% Similarity=0.379 Sum_probs=121.9
Q ss_pred cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL 180 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l 180 (286)
..+..++.+++..|.+.. +-..+..+.+|+.+++..|.+. .+...+..+++|++|++++|.|+.. ..+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i-------~~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL-------EGLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc-------cchhhc
Confidence 355667777788887775 3345778899999999999998 4544478899999999999999753 456677
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchh-hhCCCCCCEEEcccccccccCCc------------
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKA-IGELRKLGILNLGSTQLNGSIPA------------ 247 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~------------ 247 (286)
+.|+.|++.+|.++.. ..+..+..|+.++++.|.+.. +... ...+.+++.+.+.+|.+...-..
T Consensus 140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLL 216 (414)
T ss_pred cchhhheeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcc
Confidence 7799999999999842 335558899999999999973 3332 47888999999999987632110
Q ss_pred -----cCCCCC---C--CCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406 248 -----ELGKCE---N--LMSVMLSCNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 248 -----~~~~~~---~--L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
.+.++. . |+.+++++|++. .+++.+..++ +..+++..
T Consensus 217 ~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 217 DNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred cccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhh
Confidence 011111 1 567777777776 4434444555 55555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=2.3e-08 Score=90.15 Aligned_cols=171 Identities=27% Similarity=0.289 Sum_probs=102.7
Q ss_pred CCCCCEEEccCCCCCCCC-ccccccCCCCCEEecCCCCCCCCCCcccCC-------------------------------
Q 041406 103 LKRLKQLSLGENQLSDFV-PSQLGVLTQLETLSLGSNSFTGEIPSELGK------------------------------- 150 (286)
Q Consensus 103 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------- 150 (286)
+++++.|.+-...-.+.. |-.+..+.+|+.|.+.+|.+.. ..++..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 344555554333322222 5567889999999999998762 111111
Q ss_pred --CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCC
Q 041406 151 --LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGEL 228 (286)
Q Consensus 151 --l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 228 (286)
.-+|...+++.|.+. .+..++.-++.++.|+|++|++++. +.+..++.|++||++.|.++ .+|..-..-
T Consensus 161 ~~Wn~L~~a~fsyN~L~------~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g 231 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV------LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG 231 (1096)
T ss_pred hhhhhHhhhhcchhhHH------hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh
Confidence 123444444444442 1235556667788888888887743 36677778888888888876 454432222
Q ss_pred CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcccc-chhccCcc-cceEEccCC
Q 041406 229 RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSL-PEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~-L~~l~l~~N 286 (286)
.+|+.|.+++|.++. +- .+.++.+|..||+++|-+.+.- ..-+..+. |++|+|.+|
T Consensus 232 c~L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhheeeeecccHHHh-hh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 348888888887763 22 2567778888888888776421 11233444 777777766
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=2.5e-08 Score=72.00 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=35.0
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
+.++.++++.|.++ .+|+.+..++.|+.++++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34555555555555 45555666666666666666665 44555555666666666666554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.7e-07 Score=75.45 Aligned_cols=190 Identities=21% Similarity=0.203 Sum_probs=133.3
Q ss_pred cccccccc--cccCCCCCccccchh----hcCCCCCCEEEccCCCCCCCCccccc-------------cCCCCCEEecCC
Q 041406 77 SLFFLSSL--SDLSQNPLFGQLSRQ----VSNLKRLKQLSLGENQLSDFVPSQLG-------------VLTQLETLSLGS 137 (286)
Q Consensus 77 ~~~~l~~l--L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~-------------~l~~L~~L~l~~ 137 (286)
++.+++++ .++|.|-+....|+. +.+-..|.+|.+++|.+...-...++ +-+.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45567788 899999987776654 45678899999999987653222333 347899999999
Q ss_pred CCCCCCCCc-----ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCC
Q 041406 138 NSFTGEIPS-----ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLS 208 (286)
Q Consensus 138 n~l~~~~~~-----~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~ 208 (286)
|++. ..+. .+..-..|+.+.+..|.|.......-.-..+..+.+|+.|++.+|.++.. +...+..|+.|+
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 9987 3332 23444689999999998862211111122455678999999999998732 345677888999
Q ss_pred EEEcccCCCCcccchhh----h--CCCCCCEEEcccccccccCCcc-----C--CCCCCCCEEEcccCcCcc
Q 041406 209 MLDLSENPLKCSVPKAI----G--ELRKLGILNLGSTQLNGSIPAE-----L--GKCENLMSVMLSCNALSG 267 (286)
Q Consensus 209 ~L~l~~n~l~~~~~~~~----~--~l~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L~~L~l~~n~l~~ 267 (286)
.|.+..|-++......+ . ..++|+.|...+|.+.+.+... + ..+|.|..|.+.+|++..
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 99999998875443332 2 4688999999999766532211 1 457888888899998873
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=6e-07 Score=73.22 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=106.7
Q ss_pred cccCCCCCcc--ccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCC-CcccCCCCCCCEEEccC
Q 041406 85 SDLSQNPLFG--QLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEI-PSELGKLKNLKTLDLSG 161 (286)
Q Consensus 85 L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~ 161 (286)
+|+.+|.+.+ .+...+.++|.|+.|+++.|++...+...-....+|+.|.+.+..+...- -..+..++.+++|+++.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 7777777654 23344567778888888887776544332245567777777776554322 23455677777777777
Q ss_pred CccccccCCCCCCccccC-CCCCCEEEccCCcccc--cCChhccCCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcc
Q 041406 162 NEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSITG--PLPEELSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLG 237 (286)
Q Consensus 162 n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~--~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~ 237 (286)
|.+...-... ..... -+.++++....|.... ..-..-..++++..+-+..|.+...- -......+.+.-|.|+
T Consensus 156 N~~rq~n~Dd---~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~ 232 (418)
T KOG2982|consen 156 NSLRQLNLDD---NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG 232 (418)
T ss_pred chhhhhcccc---ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence 7432110000 00111 1234444444443210 00111123456666777777664221 1234456677778888
Q ss_pred ccccccc-CCccCCCCCCCCEEEcccCcCccccch------hccCcc-cceEE
Q 041406 238 STQLNGS-IPAELGKCENLMSVMLSCNALSGSLPE------QLSELP-VLIFA 282 (286)
Q Consensus 238 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~------~l~~l~-L~~l~ 282 (286)
.++|..- ..+.+.+++.|..|-++++++...+-- .+..++ +++|+
T Consensus 233 ~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 233 ANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 8877642 224567788888888888888743321 245555 65554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2e-06 Score=50.15 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=16.5
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
+|++|++++|.++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 33434445555555555555444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=1.1e-07 Score=68.69 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=30.8
Q ss_pred CCCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 102 NLKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
....|...++++|.+.. .|+.| ..++.++++++++|.+. .+|..+..++.|+.++++.|.+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc
Confidence 33444555555555554 23322 23345555555555555 4555555555555555555554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=1.1e-05 Score=62.32 Aligned_cols=85 Identities=20% Similarity=0.136 Sum_probs=38.4
Q ss_pred ccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEcccccccccCC---ccCCC
Q 041406 177 IGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGSIP---AELGK 251 (286)
Q Consensus 177 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~ 251 (286)
+..++.|.+|.+.+|+|+..-|.--..+++|..|.+.+|.+. .+. ..+..+|+|++|.+-+|.++..-- -.+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 344445555555555555433333333444555555555554 111 223445555555555555442110 11234
Q ss_pred CCCCCEEEccc
Q 041406 252 CENLMSVMLSC 262 (286)
Q Consensus 252 ~~~L~~L~l~~ 262 (286)
+|+|+.||++.
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 45555555543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.5e-06 Score=47.98 Aligned_cols=36 Identities=36% Similarity=0.535 Sum_probs=16.7
Q ss_pred CCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 230 KLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 230 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+|++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33333445555555555555544
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=2.1e-06 Score=70.09 Aligned_cols=179 Identities=19% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCCCEEEccCCCCCCC--CccccccCCCCCEEecCCCCCCCCCCccc-CCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406 102 NLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIG 178 (286)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 178 (286)
.++.++.+++.+|.++.. +...+.+++.|++|+++.|++...+. .+ ....+|+.|-+.+..+.... ....+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~----~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQ----STSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhh----hhhhhh
Confidence 446666777777766532 22334566777777777776653222 22 24556666666666654322 234455
Q ss_pred CCCCCCEEEccCCcccccC--ChhccCCC-CCCEEEcccCCCCcc--cchhhhCCCCCCEEEccccccccc-CCccCCCC
Q 041406 179 ELSLLEIFSSPSCSITGPL--PEELSKLK-FLSMLDLSENPLKCS--VPKAIGELRKLGILNLGSTQLNGS-IPAELGKC 252 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~--p~~~~~~~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~ 252 (286)
.++.+++|.++.|+..... ......++ .+.++....|....- .-..-+-.|++..+.+..|.+... -.+....+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 5666677777666443111 11222222 444555544433200 001112345666666666655421 12234445
Q ss_pred CCCCEEEcccCcCcccc-chhccCcc-cceEEccC
Q 041406 253 ENLMSVMLSCNALSGSL-PEQLSELP-VLIFAAEK 285 (286)
Q Consensus 253 ~~L~~L~l~~n~l~~~~-~~~l~~l~-L~~l~l~~ 285 (286)
|.+..|+++.|++..-. .+++..+| |.-|.+++
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 66666667666665321 13455555 55555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=1.6e-06 Score=80.69 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCc-ccchhhhCCCCCCEEEcccccccccC------CccCCC
Q 041406 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKC-SVPKAIGELRKLGILNLGSTQLNGSI------PAELGK 251 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~ 251 (286)
++++|..||+++++++.. ..++.+++|+.|.+.+-.+.. ..-..+.++++|+.||++........ .+.-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 344444444444444411 334444444444444443331 11123344555555555443322110 011123
Q ss_pred CCCCCEEEcccCcCccc
Q 041406 252 CENLMSVMLSCNALSGS 268 (286)
Q Consensus 252 ~~~L~~L~l~~n~l~~~ 268 (286)
+|.|+.||.++..+++.
T Consensus 249 LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEE 265 (699)
T ss_pred CccccEEecCCcchhHH
Confidence 45566666665555543
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=0.00012 Score=63.52 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=77.1
Q ss_pred hcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCcccc
Q 041406 100 VSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIG 178 (286)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~ 178 (286)
+..+.+++.|++++|.++. +|. --.+|+.|.+++|.-...+|..+ ..+|+.|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~------sLP---- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS------GLP---- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc------ccc----
Confidence 4567899999999998876 452 22469999999865444667654 358999999988 332 123
Q ss_pred CCCCCCEEEccCCccc--ccCChhccCCCCCCEEEcccCCCC--cccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406 179 ELSLLEIFSSPSCSIT--GPLPEELSKLKFLSMLDLSENPLK--CSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN 254 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~--~~~p~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 254 (286)
..|+.|++..+... +.+|. +|+.|.+.++... ..+|.. -.++|++|++++|... ..|..+. .+
T Consensus 112 --~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred --cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--cc
Confidence 34677777665432 23443 3444544322110 011110 1145666666666544 3333222 35
Q ss_pred CCEEEcccC
Q 041406 255 LMSVMLSCN 263 (286)
Q Consensus 255 L~~L~l~~n 263 (286)
|+.|+++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 666666554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00011 Score=63.84 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=80.0
Q ss_pred ccccccc--cccCCCCCccccchhhcCC-CCCCEEEccCCCCCCCCccccccCCCCCEEecCCC-CCCCCCCcccCCCCC
Q 041406 78 LFFLSSL--SDLSQNPLFGQLSRQVSNL-KRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN-SFTGEIPSELGKLKN 153 (286)
Q Consensus 78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 153 (286)
+..+..+ |++++|.+. .+| .+ ++|+.|.+++|.-...+|..+ ..+|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence 3334555 888888764 344 23 369999998865444456544 258999999998 444 5554 4
Q ss_pred CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc--ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC
Q 041406 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT--GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231 (286)
Q Consensus 154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 231 (286)
|+.|++..+.... + ..+|. +|+.|.+.+++.. ...|.. -.++|++|++++|... ..|..+. .+|
T Consensus 114 Le~L~L~~n~~~~-L--~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SL 179 (426)
T PRK15386 114 VRSLEIKGSATDS-I--KNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESL 179 (426)
T ss_pred cceEEeCCCCCcc-c--ccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccC
Confidence 7777777655421 1 11233 5667776443211 011111 1257889999888765 3444332 578
Q ss_pred CEEEcccc
Q 041406 232 GILNLGST 239 (286)
Q Consensus 232 ~~L~L~~n 239 (286)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888765
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=5.3e-05 Score=58.64 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEE
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVM 259 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~ 259 (286)
.....+|+++|.+... +.|..++.|.+|.+++|.|+..-|..-.-+++|+.|.|.+|.+.... ...+..+|.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3567788888887632 34667889999999999999555554456788999999999887321 12367789999999
Q ss_pred cccCcCcccc---chhccCcc-cceEEccC
Q 041406 260 LSCNALSGSL---PEQLSELP-VLIFAAEK 285 (286)
Q Consensus 260 l~~n~l~~~~---~~~l~~l~-L~~l~l~~ 285 (286)
+-+|+++..- -..+..+| |+.||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999987432 23567888 99998763
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2.7e-05 Score=72.76 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=87.4
Q ss_pred CCCCEEEccCCccccccCCCCCCccccC-CCCCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCC
Q 041406 152 KNLKTLDLSGNEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR 229 (286)
Q Consensus 152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 229 (286)
.+|++|++++...-. ..-|..++. +|+|+.|.+++-.+. +.+-....++++|..||+++++++. + ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s----~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS----NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhh----ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccc
Confidence 467777776644211 111233333 678888888776653 2334456788999999999999973 3 7788999
Q ss_pred CCCEEEcccccccc-cCCccCCCCCCCCEEEcccCcCccc--cc----hhccCcc-cceEEccC
Q 041406 230 KLGILNLGSTQLNG-SIPAELGKCENLMSVMLSCNALSGS--LP----EQLSELP-VLIFAAEK 285 (286)
Q Consensus 230 ~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~--~~----~~l~~l~-L~~l~l~~ 285 (286)
+|+.|.+.+=.+.. ..-..+..+++|+.||+|....... +. +.-..+| |+.||.|+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99999998877763 2223467899999999998765522 22 2235688 99999876
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00016 Score=58.25 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=46.2
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc-CChhcc
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-LPEELS 202 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~ 202 (286)
...+..|+.+.+.+..++ .. ..+..+++|+.|.++.|...... .++.....+++|+++++++|++... --..+.
T Consensus 39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~---~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSG---GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccc---cceehhhhCCceeEEeecCCccccccccchhh
Confidence 344556666666665554 22 23455667777777777332111 1233333446666666666666520 011233
Q ss_pred CCCCCCEEEcccCCCC
Q 041406 203 KLKFLSMLDLSENPLK 218 (286)
Q Consensus 203 ~~~~L~~L~l~~n~l~ 218 (286)
.+.+|..|++.+|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 4455666666666554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0028 Score=46.19 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=26.8
Q ss_pred hhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccC
Q 041406 99 QVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSG 161 (286)
Q Consensus 99 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 161 (286)
+|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+..+.+++.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 455666677776653 344444445666666666666553 4422223445555566666543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0029 Score=46.08 Aligned_cols=106 Identities=13% Similarity=0.192 Sum_probs=41.4
Q ss_pred cccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc
Q 041406 122 SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL 201 (286)
Q Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 201 (286)
..|..+.+|+.+.+.. .+.......|..+.+++.+.+.++ +.... ...+.+.++++.+.+.. .+.......+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-----~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG-----DNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE------TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc-----eeeeecccccccccccc-cccccccccc
Confidence 3456666777777664 344333345566666777666553 32111 13344454566666544 2221223344
Q ss_pred cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLG 237 (286)
Q Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 237 (286)
..+++|+.+++..+ +.......+.+. +++.+.+.
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 44555555555443 321222333343 55555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00047 Score=55.53 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=64.9
Q ss_pred cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC--cccccCChhccCCCCCCEEEcccCCCCcccchh-
Q 041406 148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC--SITGPLPEELSKLKFLSMLDLSENPLKCSVPKA- 224 (286)
Q Consensus 148 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~- 224 (286)
...+..|+.+.+.+..++. -..+..+++|++|.++.| .+++.++.....+++|+++++++|++.. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt-------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccchhhhhhhccceee-------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 3345556666666665542 134556778888888888 5565566555666888888888888862 333
Q ss_pred --hhCCCCCCEEEcccccccccCC---ccCCCCCCCCEEEcc
Q 041406 225 --IGELRKLGILNLGSTQLNGSIP---AELGKCENLMSVMLS 261 (286)
Q Consensus 225 --~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~ 261 (286)
+..+++|..|++.+|..+...- ..|.-+++|++||-.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 3456667777777776653111 123345666666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=2.8e-05 Score=63.16 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc--hhhhCCCCCCEEEcccccccccCCc-----cCCC
Q 041406 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP--KAIGELRKLGILNLGSTQLNGSIPA-----ELGK 251 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~ 251 (286)
+++.|+.|.|+-|.|+.. ..+..+++|++|.|..|.|.+ +. ..+.++|+|+.|+|..|.-.+..+. .+..
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 455555555555555422 224455555566665555542 21 1234555666666665555544332 2334
Q ss_pred CCCCCEEE
Q 041406 252 CENLMSVM 259 (286)
Q Consensus 252 ~~~L~~L~ 259 (286)
+|+|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=7.2e-05 Score=60.82 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEE
Q 041406 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSV 258 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L 258 (286)
+.+.+.|++-+|.+.+. ....+++.|+.|.|+-|+|+. + ..+..+++|+.|.|..|.|...- ..++.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566677777777642 335578899999999999973 3 56788999999999999887421 2467889999999
Q ss_pred EcccCcCccccchh-----ccCcc-cceEE
Q 041406 259 MLSCNALSGSLPEQ-----LSELP-VLIFA 282 (286)
Q Consensus 259 ~l~~n~l~~~~~~~-----l~~l~-L~~l~ 282 (286)
-|..|...|..+.. +..+| |++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998776643 56677 77775
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.30 E-value=0.0019 Score=31.29 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=12.7
Q ss_pred CCCEEEcccCcCccccchhccC
Q 041406 254 NLMSVMLSCNALSGSLPEQLSE 275 (286)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~ 275 (286)
+|++||+++|+++ .+|+.+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 56655544
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.84 E-value=3.7e-05 Score=68.76 Aligned_cols=182 Identities=30% Similarity=0.315 Sum_probs=108.6
Q ss_pred cccCCCCCcccc----chhhcCCCCCCEEEccCCCCCCCCcccc----ccC-CCCCEEecCCCCCCCC----CCcccCCC
Q 041406 85 SDLSQNPLFGQL----SRQVSNLKRLKQLSLGENQLSDFVPSQL----GVL-TQLETLSLGSNSFTGE----IPSELGKL 151 (286)
Q Consensus 85 L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l~~l 151 (286)
+.+.+|.+...- ...+...+.|+.|++++|.+.......+ ... +.+++|++..|.++.. +.+.+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 556666664432 3444566778888888887774322222 122 4566777777777642 33445557
Q ss_pred CCCCEEEccCCccccccCCCCCCcccc----CCCCCCEEEccCCcccccC----ChhccCCCC-CCEEEcccCCCCcccc
Q 041406 152 KNLKTLDLSGNEFNGTVRDKLLPPEIG----ELSLLEIFSSPSCSITGPL----PEELSKLKF-LSMLDLSENPLKCSVP 222 (286)
Q Consensus 152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~----~l~~L~~L~l~~n~~~~~~----p~~~~~~~~-L~~L~l~~n~l~~~~~ 222 (286)
..++.++++.|.+. ......++..+. ...++++|.+++|.++... ...+...+. +..+++..|.+.+...
T Consensus 172 ~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred cchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 77888888888763 111112333333 3667888888888776221 123334444 6668888888764422
Q ss_pred ----hhhhCC-CCCCEEEcccccccccC----CccCCCCCCCCEEEcccCcCcc
Q 041406 223 ----KAIGEL-RKLGILNLGSTQLNGSI----PAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 223 ----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
+.+... ..++.++++.|.+++.. ...+..++.++++.++.|.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 223333 56788888888887533 3344556788888888888764
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.011 Score=28.60 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.2
Q ss_pred CCEEEccCCccc
Q 041406 183 LEIFSSPSCSIT 194 (286)
Q Consensus 183 L~~L~l~~n~~~ 194 (286)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0038 Score=48.59 Aligned_cols=81 Identities=22% Similarity=0.145 Sum_probs=40.6
Q ss_pred CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhh-CCCCCCEEEcccc-cccccCCccCCCCCCCCEE
Q 041406 182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIG-ELRKLGILNLGST-QLNGSIPAELGKCENLMSV 258 (286)
Q Consensus 182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L 258 (286)
.++.++-++..|..+--+.+..++.++.|.+.+|.--+. --..++ -.++|+.|++++| .||+.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666666554445555556666666655542210 001111 2355666666655 4554444445555555555
Q ss_pred Eccc
Q 041406 259 MLSC 262 (286)
Q Consensus 259 ~l~~ 262 (286)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.55 E-value=0.025 Score=25.36 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=5.9
Q ss_pred CCCEEEcccCcCc
Q 041406 254 NLMSVMLSCNALS 266 (286)
Q Consensus 254 ~L~~L~l~~n~l~ 266 (286)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.36 E-value=0.00017 Score=64.61 Aligned_cols=180 Identities=24% Similarity=0.213 Sum_probs=121.4
Q ss_pred CCEEEccCCCCCCCCcc----ccccCCCCCEEecCCCCCCCCCC----cccCCC-CCCCEEEccCCccccccCCCCCCcc
Q 041406 106 LKQLSLGENQLSDFVPS----QLGVLTQLETLSLGSNSFTGEIP----SELGKL-KNLKTLDLSGNEFNGTVRDKLLPPE 176 (286)
Q Consensus 106 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~ 176 (286)
+..+.+.+|.+...... .+...+.|..|++++|.+.+..- ..+... ..++.|++..|.++... ...+.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g-~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG-AAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc-hHHHHHH
Confidence 78889999998765443 34567899999999999873221 223333 56788888888876432 2345566
Q ss_pred ccCCCCCCEEEccCCcccc----cCChhc----cCCCCCCEEEcccCCCCccc----chhhhCCCC-CCEEEcccccccc
Q 041406 177 IGELSLLEIFSSPSCSITG----PLPEEL----SKLKFLSMLDLSENPLKCSV----PKAIGELRK-LGILNLGSTQLNG 243 (286)
Q Consensus 177 ~~~l~~L~~L~l~~n~~~~----~~p~~~----~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~ 243 (286)
+.....++.++++.|.+.. .++..+ ....++++|++.+|.++... ...+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 7777889999999998741 122233 35778999999999887322 123344455 7779999998874
Q ss_pred c----CCccCCCC-CCCCEEEcccCcCccccc----hhccCcc-cceEEccCC
Q 041406 244 S----IPAELGKC-ENLMSVMLSCNALSGSLP----EQLSELP-VLIFAAEKN 286 (286)
Q Consensus 244 ~----~~~~~~~~-~~L~~L~l~~n~l~~~~~----~~l~~l~-L~~l~l~~N 286 (286)
. ....+... ..+++++++.|.+++.-. +.+...+ ++.+.+++|
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 3 22334444 678999999999986433 4455555 777777655
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.38 E-value=0.01 Score=53.41 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCCCCEEEccCCc-ccccCC-hhccCCCCCCEEEcccCC
Q 041406 180 LSLLEIFSSPSCS-ITGPLP-EELSKLKFLSMLDLSENP 216 (286)
Q Consensus 180 l~~L~~L~l~~n~-~~~~~p-~~~~~~~~L~~L~l~~n~ 216 (286)
+++|++|.+.++. ++...- .....++.|++|+++.+.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555544444 232111 112334445555555443
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.71 E-value=0.038 Score=27.20 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=8.9
Q ss_pred CCCCEEEcccCcCccccc
Q 041406 253 ENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~ 270 (286)
++|++|++++|+|++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456666666666554433
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.37 E-value=0.034 Score=43.42 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=52.9
Q ss_pred CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-Chhcc-CCCCCCEEEcccC-CCCcccchhhhCC
Q 041406 152 KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL-PEELS-KLKFLSMLDLSEN-PLKCSVPKAIGEL 228 (286)
Q Consensus 152 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~l 228 (286)
-.++.++.++..|.... -+.+..++.++.|.+.+|.-.+.. -+.++ -.++|+.|++++| .|+......+.++
T Consensus 101 ~~IeaVDAsds~I~~eG-----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEG-----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHH-----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 45778888888776432 245666777777877777543211 11121 3468899999876 4665555667788
Q ss_pred CCCCEEEcccc
Q 041406 229 RKLGILNLGST 239 (286)
Q Consensus 229 ~~L~~L~L~~n 239 (286)
++|+.|.+.+=
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 88888877543
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.30 E-value=0.097 Score=47.13 Aligned_cols=114 Identities=24% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCCCCEEecCCCCCCCC--CCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCc-ccccCChhcc
Q 041406 127 LTQLETLSLGSNSFTGE--IPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCS-ITGPLPEELS 202 (286)
Q Consensus 127 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~ 202 (286)
++.|+.+.+..+.-... .-......+.|+.|+++++ ......+ .........+.+|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45566666655532212 1223345666666666652 1111110 0011223334667777777666 4433222222
Q ss_pred -CCCCCCEEEcccCC-CCcccch-hhhCCCCCCEEEcccccc
Q 041406 203 -KLKFLSMLDLSENP-LKCSVPK-AIGELRKLGILNLGSTQL 241 (286)
Q Consensus 203 -~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l 241 (286)
.+++|+.|.+.++. +++..-. ....++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766665 4433222 223567777777776643
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.58 E-value=0.0075 Score=48.16 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406 148 LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227 (286)
Q Consensus 148 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (286)
+......+.||++.|++.. +-..+..++.+..++++-|.+. .+|..++....+..++...|+.+ ..|.+++.
T Consensus 38 i~~~kr~tvld~~s~r~vn------~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN------LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hhccceeeeehhhhhHHHh------hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 3445556666666665531 1233444455555555555554 45555555555555555555554 45555555
Q ss_pred CCCCCEEEccccccc
Q 041406 228 LRKLGILNLGSTQLN 242 (286)
Q Consensus 228 l~~L~~L~L~~n~l~ 242 (286)
.+.++++++..+.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 555555555555443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.14 E-value=0.4 Score=23.91 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=7.3
Q ss_pred CCCCEEEccCCCCCC
Q 041406 104 KRLKQLSLGENQLSD 118 (286)
Q Consensus 104 ~~L~~L~l~~n~l~~ 118 (286)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.14 E-value=0.4 Score=23.91 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=7.3
Q ss_pred CCCCEEEccCCCCCC
Q 041406 104 KRLKQLSLGENQLSD 118 (286)
Q Consensus 104 ~~L~~L~l~~n~l~~ 118 (286)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.46 E-value=0.03 Score=44.81 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=54.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.||++.|++. .+...+..++.+ ++++.|.+ ...|+.+++...++.+++..|..+. .|.++...+.++++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhc
Confidence 7888888888765 334455666666 77777766 3556666666777777777776654 67777777777777777
Q ss_pred CCCCC
Q 041406 137 SNSFT 141 (286)
Q Consensus 137 ~n~l~ 141 (286)
.+.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 76654
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.30 E-value=1 Score=22.64 Aligned_cols=18 Identities=44% Similarity=0.584 Sum_probs=12.9
Q ss_pred CCCCEEEcccCcCccccch
Q 041406 253 ENLMSVMLSCNALSGSLPE 271 (286)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~ 271 (286)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777888888877 6665
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.58 E-value=2.4 Score=21.61 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=12.3
Q ss_pred CCCCEEEcccCcCcc
Q 041406 253 ENLMSVMLSCNALSG 267 (286)
Q Consensus 253 ~~L~~L~l~~n~l~~ 267 (286)
++|++||+++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578899999998864
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.48 E-value=3.3 Score=20.82 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=7.5
Q ss_pred CCCCEEecCCCCCC
Q 041406 128 TQLETLSLGSNSFT 141 (286)
Q Consensus 128 ~~L~~L~l~~n~l~ 141 (286)
.+|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=72.81 E-value=2.4 Score=37.26 Aligned_cols=157 Identities=17% Similarity=0.089 Sum_probs=92.1
Q ss_pred cCCCCCCEEEccCCCCCCCCc-cc-cccCCCCCEEecCCCCC-CCCCCccc-CCCCCCCEEEccCCccccccCCCCCCcc
Q 041406 101 SNLKRLKQLSLGENQLSDFVP-SQ-LGVLTQLETLSLGSNSF-TGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPE 176 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 176 (286)
..+.+|++++.+++...+..+ .. ..+..+|+.+.++.|+- +..--..+ .+.++|+.+++..+...... .+...
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~---tL~sl 367 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG---TLASL 367 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh---hHhhh
Confidence 346788999988876533222 12 24568899999988863 21111112 35678888888877643211 12333
Q ss_pred ccCCCCCCEEEccCCccc-cc----CChhccCCCCCCEEEcccCCCC-cccchhhhCCCCCCEEEccccccc-cc-CCcc
Q 041406 177 IGELSLLEIFSSPSCSIT-GP----LPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQLN-GS-IPAE 248 (286)
Q Consensus 177 ~~~l~~L~~L~l~~n~~~-~~----~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~-~~~~ 248 (286)
-.+.+.|+.+.++.+... +. +...-.....|+.+.++++... +..-..+..+++|+.+++.+++-. .. +...
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 445678888888877542 21 1222234567888888888754 333455677889999988877432 21 1112
Q ss_pred CCCCCCCCEEEc
Q 041406 249 LGKCENLMSVML 260 (286)
Q Consensus 249 ~~~~~~L~~L~l 260 (286)
-..+|+++..-+
T Consensus 448 ~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 448 ATHLPNIKVHAY 459 (483)
T ss_pred HhhCccceehhh
Confidence 234566555433
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.36 E-value=2.1 Score=37.51 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=46.5
Q ss_pred CCCCCCEEEccCCcc-ccc-CChhccCCCCCCEEEcccCCCC--cccchhhhCCCCCCEEEcccccc-ccc----CCccC
Q 041406 179 ELSLLEIFSSPSCSI-TGP-LPEELSKLKFLSMLDLSENPLK--CSVPKAIGELRKLGILNLGSTQL-NGS----IPAEL 249 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~-~~~-~p~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l-~~~----~~~~~ 249 (286)
+..+|+.+-++.++. +.. +-..-.+++.|+.+++..+... +.+...-.+++.|+.+.++.+.. ++. +...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 345666666666542 111 0111234455666666555432 11112223566777777776632 221 11122
Q ss_pred CCCCCCCEEEcccCcCc-cccchhccCcc-cceEE
Q 041406 250 GKCENLMSVMLSCNALS-GSLPEQLSELP-VLIFA 282 (286)
Q Consensus 250 ~~~~~L~~L~l~~n~l~-~~~~~~l~~l~-L~~l~ 282 (286)
..+..++.+.+++++.. ....+.+...+ |+.++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 33455666666666432 22223344444 44443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.34 E-value=3.3 Score=37.67 Aligned_cols=62 Identities=19% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCCCCEEEccCCccccc--CChhccCCCCCCEEEcccC--CCCcccchhhh--CCCCCCEEEcccccccc
Q 041406 180 LSLLEIFSSPSCSITGP--LPEELSKLKFLSMLDLSEN--PLKCSVPKAIG--ELRKLGILNLGSTQLNG 243 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~--~p~~~~~~~~L~~L~l~~n--~l~~~~~~~~~--~l~~L~~L~L~~n~l~~ 243 (286)
.+.+..+++++|++... +...-...++|..|+|++| .+. ...++. +...|++|.+.+|.++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 34455555555554311 1112233455666666666 222 111121 22345566666666554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.58 E-value=4.5 Score=36.84 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=38.0
Q ss_pred CCCCCCEEEcccCCCCcc--cchhhhCCCCCCEEEcccc--cccccCCccCC--CCCCCCEEEcccCcCccc
Q 041406 203 KLKFLSMLDLSENPLKCS--VPKAIGELRKLGILNLGST--QLNGSIPAELG--KCENLMSVMLSCNALSGS 268 (286)
Q Consensus 203 ~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~ 268 (286)
+.+.+..+.+++|++... +...-...|+|..|+|++| .+... .++. +...|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 345677777888877521 1112235678888888888 43321 1122 234578888888887643
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.96 E-value=37 Score=30.66 Aligned_cols=106 Identities=20% Similarity=0.115 Sum_probs=54.3
Q ss_pred CEEEEEcCCCCcccccCccccccccccccCCCCCccccchhh---cCCCCCCEEEccCCCCCCCCccccccC---CCCCE
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQV---SNLKRLKQLSLGENQLSDFVPSQLGVL---TQLET 132 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~ 132 (286)
+++.++++.|.+....|..+..-.+=+.++.|..+...-..+ ..-..+.+++++.|.....+|..+..+ ..++.
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ 245 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFK 245 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhc
Confidence 567777777777666665554422225555554433211111 111346677777777766666543322 34556
Q ss_pred EecCCCCCCC---CCCcccCCCCCCCEEEccCCcc
Q 041406 133 LSLGSNSFTG---EIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 133 L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++.+...+.- .-+-..+.-++++..+++.|..
T Consensus 246 ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 246 LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccchhhcccccccccccccchhhhccCCC
Confidence 6665554431 1111223345666666666654
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.69 E-value=12 Score=18.35 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=5.2
Q ss_pred CCCCEEEccCC
Q 041406 104 KRLKQLSLGEN 114 (286)
Q Consensus 104 ~~L~~L~l~~n 114 (286)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444544444
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.28 E-value=56 Score=36.31 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.8
Q ss_pred ccCCCCCccccchhhcCCCCCCEEEccCCCCCC
Q 041406 86 DLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSD 118 (286)
Q Consensus 86 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 118 (286)
||++|+|....+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899887777888889999999999988764
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.96 E-value=79 Score=35.26 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=20.8
Q ss_pred EcCCCCcccccCccccccccc--cccCCCCC
Q 041406 64 VLPTHSLKGPLSPSLFFLSSL--SDLSQNPL 92 (286)
Q Consensus 64 ~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~ 92 (286)
||++|+|+..-+..|..+..| |+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 477888875555567777777 88888765
Done!