Query 041406
Match_columns 286
No_of_seqs 248 out of 3086
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-42 9.4E-47 292.6 21.0 264 16-286 2-278 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.9E-37 1.3E-41 290.0 21.0 271 13-286 5-328 (768)
3 4eco_A Uncharacterized protein 100.0 1.8E-37 6.1E-42 286.6 15.0 244 14-266 24-390 (636)
4 4fcg_A Uncharacterized protein 100.0 4.8E-37 1.6E-41 262.0 15.2 262 15-286 22-311 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 8.6E-36 2.9E-40 281.3 16.7 259 14-286 263-654 (876)
6 3rgz_A Protein brassinosteroid 100.0 2.7E-32 9.3E-37 257.1 22.0 223 59-286 419-714 (768)
7 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-32 4.7E-37 233.0 12.7 220 59-286 77-301 (313)
8 2z66_A Variable lymphocyte rec 100.0 2.9E-30 9.9E-35 218.0 18.3 233 48-286 7-258 (306)
9 3zyi_A Leucine-rich repeat-con 100.0 2.7E-29 9.2E-34 223.2 21.8 222 59-286 76-300 (452)
10 3zyj_A Leucine-rich repeat-con 100.0 8.9E-29 3E-33 219.1 22.3 222 59-286 65-289 (440)
11 3v47_A TOLL-like receptor 5B a 100.0 2.3E-29 8E-34 223.6 17.7 223 59-286 31-381 (455)
12 3v47_A TOLL-like receptor 5B a 100.0 1.7E-28 5.9E-33 218.0 21.6 228 59-286 80-405 (455)
13 1ozn_A Reticulon 4 receptor; N 100.0 3.2E-28 1.1E-32 203.4 21.9 204 59-267 33-239 (285)
14 1xku_A Decorin; proteoglycan, 100.0 3E-28 1E-32 207.8 21.7 238 38-285 18-272 (330)
15 2z80_A TOLL-like receptor 2, v 100.0 3.4E-29 1.2E-33 215.6 14.2 220 59-286 53-311 (353)
16 1ozn_A Reticulon 4 receptor; N 100.0 5.5E-28 1.9E-32 202.0 19.1 219 60-286 13-235 (285)
17 2o6q_A Variable lymphocyte rec 100.0 9.3E-28 3.2E-32 199.1 20.0 215 46-268 3-220 (270)
18 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-28 2.6E-32 205.5 19.0 232 48-286 33-304 (332)
19 2id5_A Lingo-1, leucine rich r 100.0 7.6E-28 2.6E-32 215.2 19.3 223 59-286 33-282 (477)
20 3oja_B Anopheles plasmodium-re 100.0 1.1E-27 3.7E-32 219.9 20.1 222 60-286 77-334 (597)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.1E-27 1.4E-31 216.9 22.1 107 180-286 468-577 (635)
22 3o6n_A APL1; leucine-rich repe 100.0 3.8E-27 1.3E-31 205.4 19.6 223 59-286 70-328 (390)
23 4fcg_A Uncharacterized protein 100.0 1.9E-27 6.5E-32 202.6 16.2 199 59-266 105-314 (328)
24 3t6q_A CD180 antigen; protein- 100.0 7E-27 2.4E-31 214.8 20.9 223 59-286 302-533 (606)
25 2id5_A Lingo-1, leucine rich r 100.0 5E-27 1.7E-31 209.9 19.3 228 59-286 57-330 (477)
26 3t6q_A CD180 antigen; protein- 99.9 7.4E-27 2.5E-31 214.6 20.6 222 59-286 34-335 (606)
27 3o6n_A APL1; leucine-rich repe 99.9 6.9E-27 2.3E-31 203.8 18.9 216 59-286 94-349 (390)
28 3j0a_A TOLL-like receptor 5; m 99.9 5.2E-27 1.8E-31 223.2 18.7 142 48-193 14-160 (844)
29 3oja_B Anopheles plasmodium-re 99.9 1E-26 3.5E-31 213.4 18.9 216 59-286 100-355 (597)
30 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-27 1E-31 214.8 15.0 142 59-204 27-171 (549)
31 4eco_A Uncharacterized protein 99.9 8.2E-28 2.8E-32 222.1 10.9 218 59-286 207-467 (636)
32 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-26 6.1E-31 214.8 19.8 222 59-285 26-305 (680)
33 1xku_A Decorin; proteoglycan, 99.9 6.6E-26 2.3E-30 193.3 21.0 203 59-273 77-283 (330)
34 1wwl_A Monocyte differentiatio 99.9 4.6E-28 1.6E-32 205.1 7.1 218 60-286 65-306 (312)
35 2z66_A Variable lymphocyte rec 99.9 2.1E-26 7.2E-31 194.3 17.3 218 61-286 10-233 (306)
36 3zyj_A Leucine-rich repeat-con 99.9 9.8E-26 3.4E-30 199.6 20.6 217 62-286 47-265 (440)
37 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-26 6.3E-31 208.3 15.6 104 59-165 22-128 (520)
38 2z62_A TOLL-like receptor 4, v 99.9 6.5E-26 2.2E-30 188.5 17.5 207 59-270 29-241 (276)
39 2z62_A TOLL-like receptor 4, v 99.9 1.1E-25 3.7E-30 187.2 18.7 212 66-286 15-234 (276)
40 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.4E-30 199.5 20.2 214 63-286 59-276 (452)
41 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-26 1.1E-30 210.4 15.8 202 78-286 346-555 (606)
42 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-25 4E-30 191.9 18.0 223 59-286 79-330 (332)
43 1wwl_A Monocyte differentiatio 99.9 2.3E-27 7.9E-32 200.8 7.4 221 53-286 38-284 (312)
44 1ziw_A TOLL-like receptor 3; i 99.9 2.5E-25 8.5E-30 207.1 20.2 223 59-286 382-619 (680)
45 3vq2_A TLR4, TOLL-like recepto 99.9 5E-26 1.7E-30 209.1 14.7 218 59-286 308-531 (606)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-26 2.9E-30 205.9 15.9 225 59-286 53-438 (562)
47 2o6q_A Variable lymphocyte rec 99.9 1.5E-24 5.1E-29 179.8 21.1 194 85-286 21-215 (270)
48 4ecn_A Leucine-rich repeat pro 99.9 3.3E-25 1.1E-29 209.4 19.2 221 59-286 516-816 (876)
49 3oja_A Leucine-rich immune mol 99.9 5E-26 1.7E-30 203.7 12.7 209 59-286 35-247 (487)
50 3rfs_A Internalin B, repeat mo 99.9 5.9E-25 2E-29 182.4 17.3 203 59-277 42-246 (272)
51 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-25 1.8E-29 198.8 18.5 125 61-195 3-129 (520)
52 3j0a_A TOLL-like receptor 5; m 99.9 6E-25 2E-29 209.1 19.5 106 181-286 266-372 (844)
53 2z80_A TOLL-like receptor 2, v 99.9 6.8E-26 2.3E-30 195.0 11.8 229 40-286 22-287 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-26 2.4E-30 192.1 11.7 209 59-286 35-247 (317)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-24 4.5E-29 198.0 17.9 127 59-195 32-160 (562)
56 2z63_A TOLL-like receptor 4, v 99.9 1E-24 3.4E-29 198.9 17.0 219 59-286 29-335 (570)
57 1p9a_G Platelet glycoprotein I 99.9 6.9E-24 2.4E-28 177.5 20.7 197 59-267 11-209 (290)
58 1p9a_G Platelet glycoprotein I 99.9 4E-24 1.4E-28 178.9 19.1 197 78-286 6-205 (290)
59 2z63_A TOLL-like receptor 4, v 99.9 6.7E-25 2.3E-29 200.1 14.7 195 85-286 330-528 (570)
60 3m19_A Variable lymphocyte rec 99.9 9.9E-24 3.4E-28 173.0 17.2 188 48-244 5-194 (251)
61 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6.2E-28 179.2 19.6 209 59-286 111-343 (347)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1.1E-28 182.0 13.9 210 59-286 11-224 (317)
63 4fmz_A Internalin; leucine ric 99.9 4.7E-23 1.6E-27 176.7 20.7 214 59-286 89-321 (347)
64 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-24 8.5E-29 195.5 13.4 137 59-195 51-210 (549)
65 3rfs_A Internalin B, repeat mo 99.9 5E-23 1.7E-27 170.8 19.3 184 78-270 37-222 (272)
66 4glp_A Monocyte differentiatio 99.9 1.3E-24 4.4E-29 183.7 9.4 221 59-286 65-304 (310)
67 2xwt_C Thyrotropin receptor; s 99.9 1.2E-23 4E-28 171.2 14.4 191 85-286 36-236 (239)
68 3cvr_A Invasion plasmid antige 99.9 3.3E-24 1.1E-28 194.1 12.1 206 39-277 34-254 (571)
69 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.8E-27 180.6 21.6 205 59-286 178-385 (466)
70 3oja_A Leucine-rich immune mol 99.9 9.9E-24 3.4E-28 188.8 14.1 190 79-286 31-224 (487)
71 2ast_B S-phase kinase-associat 99.9 2.2E-25 7.4E-30 190.4 3.1 230 49-286 38-282 (336)
72 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-22 6E-27 179.3 21.8 188 59-267 43-247 (457)
73 4glp_A Monocyte differentiatio 99.9 8.1E-24 2.8E-28 178.8 12.4 201 59-267 92-308 (310)
74 2xwt_C Thyrotropin receptor; s 99.9 2.9E-23 9.8E-28 168.9 15.0 196 58-264 31-237 (239)
75 3m19_A Variable lymphocyte rec 99.9 1.3E-22 4.5E-27 166.3 18.9 176 85-268 19-194 (251)
76 2ca6_A RAN GTPase-activating p 99.9 5.4E-25 1.9E-29 191.6 3.5 227 59-286 33-313 (386)
77 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 8.8E-27 169.4 18.6 188 59-267 42-231 (308)
78 1o6v_A Internalin A; bacterial 99.9 3.3E-22 1.1E-26 178.2 19.6 208 59-286 69-319 (466)
79 1h6u_A Internalin H; cell adhe 99.9 3.8E-22 1.3E-26 168.4 18.0 188 78-286 37-227 (308)
80 3goz_A Leucine-rich repeat-con 99.9 3.4E-24 1.2E-28 185.0 3.2 227 59-286 23-294 (362)
81 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 4.7E-26 173.5 19.0 163 59-245 65-249 (457)
82 2o6s_A Variable lymphocyte rec 99.9 5E-22 1.7E-26 158.1 13.7 179 48-251 7-187 (208)
83 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.4E-28 179.3 4.1 202 59-266 71-284 (336)
84 3g06_A SSPH2 (leucine-rich rep 99.9 9.4E-22 3.2E-26 180.1 16.4 73 205-286 221-294 (622)
85 3goz_A Leucine-rich repeat-con 99.9 3.9E-23 1.3E-27 178.4 6.1 224 62-286 2-263 (362)
86 4b8c_D Glucose-repressible alc 99.9 2.8E-23 9.5E-28 194.0 4.3 233 14-263 126-369 (727)
87 1jl5_A Outer protein YOPM; leu 99.9 9.4E-22 3.2E-26 174.5 13.4 203 59-286 12-247 (454)
88 2o6s_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 153.5 14.7 178 85-277 12-189 (208)
89 2ca6_A RAN GTPase-activating p 99.9 2E-23 7E-28 181.6 1.5 212 59-270 61-320 (386)
90 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-21 1.1E-25 177.5 14.7 175 85-265 57-236 (635)
91 1z7x_W Ribonuclease inhibitor; 99.9 4.6E-23 1.6E-27 183.3 1.9 183 103-286 198-408 (461)
92 1jl5_A Outer protein YOPM; leu 99.9 2.4E-20 8.1E-25 165.5 18.9 205 59-286 154-406 (454)
93 1h6t_A Internalin B; cell adhe 99.9 2E-20 6.9E-25 156.5 16.9 183 64-267 30-214 (291)
94 1z7x_W Ribonuclease inhibitor; 99.8 9E-23 3.1E-27 181.4 0.5 227 59-286 86-351 (461)
95 3e6j_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 149.6 15.7 163 39-220 10-174 (229)
96 1h6t_A Internalin B; cell adhe 99.8 3.2E-20 1.1E-24 155.3 15.5 166 59-243 47-214 (291)
97 4ay9_X Follicle-stimulating ho 99.8 2.2E-20 7.5E-25 160.4 13.5 227 48-285 9-255 (350)
98 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4E-24 165.9 18.9 164 85-267 48-211 (605)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.5E-24 145.4 16.9 157 106-270 13-170 (220)
100 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.6E-24 164.7 18.1 171 83-286 60-240 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 1.8E-19 6E-24 144.7 16.1 150 85-242 16-165 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.8E-24 144.8 16.0 152 85-244 16-168 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7E-24 144.3 16.4 153 107-267 14-166 (220)
104 4ezg_A Putative uncharacterize 99.8 7.8E-20 2.7E-24 144.2 13.4 154 101-267 41-195 (197)
105 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.7E-24 156.1 15.5 175 85-267 23-203 (361)
106 1m9s_A Internalin B; cell inva 99.8 1.2E-19 4E-24 165.9 15.9 181 85-286 26-207 (605)
107 4ezg_A Putative uncharacterize 99.8 1.2E-19 4E-24 143.2 13.5 150 124-286 40-191 (197)
108 3e6j_A Variable lymphocyte rec 99.8 5.7E-19 2E-23 142.5 17.6 134 128-267 40-173 (229)
109 2xot_A Amphoterin-induced prot 99.8 2.3E-19 7.8E-24 154.7 13.9 175 62-242 22-202 (361)
110 3g06_A SSPH2 (leucine-rich rep 99.8 7.7E-19 2.6E-23 160.8 17.2 88 181-277 221-308 (622)
111 1xeu_A Internalin C; cellular 99.8 7.7E-19 2.6E-23 144.7 15.3 164 85-268 24-187 (263)
112 4ay9_X Follicle-stimulating ho 99.8 4.7E-19 1.6E-23 152.1 12.1 210 61-281 12-231 (350)
113 1xeu_A Internalin C; cellular 99.8 1.4E-17 4.8E-22 137.2 14.0 165 60-244 21-187 (263)
114 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.2E-22 129.3 14.3 130 107-244 11-141 (192)
115 1dce_A Protein (RAB geranylger 99.7 5.8E-21 2E-25 173.5 -7.8 193 79-283 346-567 (567)
116 2ell_A Acidic leucine-rich nuc 99.7 1.6E-17 5.3E-22 127.5 11.1 136 104-271 24-164 (168)
117 1dce_A Protein (RAB geranylger 99.7 7.4E-20 2.5E-24 166.2 -2.5 190 59-260 350-567 (567)
118 2ell_A Acidic leucine-rich nuc 99.7 5.4E-17 1.9E-21 124.5 11.5 131 82-218 24-160 (168)
119 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.9E-21 125.5 12.9 133 131-270 11-143 (192)
120 2je0_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 122.5 8.9 37 105-141 18-55 (149)
121 2je0_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 121.7 8.9 108 128-242 17-126 (149)
122 2wfh_A SLIT homolog 2 protein 99.7 5.2E-16 1.8E-20 121.8 14.5 127 107-242 13-139 (193)
123 4b8c_D Glucose-repressible alc 99.7 1.4E-17 4.7E-22 155.7 6.0 148 120-276 216-364 (727)
124 2o6r_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 118.5 14.4 91 178-268 49-139 (177)
125 2wfh_A SLIT homolog 2 protein 99.7 1.2E-15 4.2E-20 119.6 13.6 129 130-267 12-140 (193)
126 3ogk_B Coronatine-insensitive 99.6 6.5E-17 2.2E-21 148.0 3.5 40 174-213 286-326 (592)
127 1a9n_A U2A', U2A'; complex (nu 99.6 8.5E-16 2.9E-20 118.7 9.3 132 100-266 15-153 (176)
128 2o6r_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 114.2 13.7 125 154-286 9-134 (177)
129 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-15 6E-20 116.9 9.2 127 149-286 16-150 (176)
130 3ogk_B Coronatine-insensitive 99.6 2.6E-16 8.9E-21 143.9 4.5 125 59-189 165-326 (592)
131 1ds9_A Outer arm dynein; leuci 99.6 7.9E-18 2.7E-22 132.8 -6.1 153 102-266 16-185 (198)
132 3sb4_A Hypothetical leucine ri 99.6 5.3E-15 1.8E-19 125.7 10.9 218 59-283 50-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.6 1.5E-17 5.1E-22 131.2 -6.9 149 124-282 14-180 (198)
134 2p1m_B Transport inhibitor res 99.5 2.5E-16 8.5E-21 144.1 -4.4 207 59-267 290-520 (594)
135 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 104.9 12.1 105 130-242 11-115 (170)
136 2p1m_B Transport inhibitor res 99.5 1.2E-15 4.2E-20 139.5 -0.7 201 80-283 103-345 (594)
137 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 105.3 11.3 104 131-242 15-118 (174)
138 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 105.3 10.8 108 153-268 10-117 (170)
139 2r9u_A Variable lymphocyte rec 99.5 3E-13 1E-17 104.2 10.9 106 154-267 14-119 (174)
140 3un9_A NLR family member X1; l 99.4 4.4E-15 1.5E-19 128.1 -3.4 158 85-243 77-253 (372)
141 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.5E-16 108.1 17.7 212 60-285 159-379 (401)
142 3un9_A NLR family member X1; l 99.4 2.5E-14 8.5E-19 123.4 -1.8 172 103-275 71-261 (372)
143 3sb4_A Hypothetical leucine ri 99.4 6.1E-12 2.1E-16 106.7 12.6 172 81-260 100-328 (329)
144 4fdw_A Leucine rich hypothetic 99.3 6.4E-11 2.2E-15 103.1 17.5 183 92-286 168-355 (401)
145 2ifg_A High affinity nerve gro 99.3 9.6E-12 3.3E-16 106.2 10.2 105 155-267 11-117 (347)
146 2ifg_A High affinity nerve gro 99.3 1.7E-11 5.9E-16 104.7 11.0 105 131-243 11-117 (347)
147 2ra8_A Uncharacterized protein 99.1 2.6E-11 8.9E-16 103.9 3.2 63 204-266 251-320 (362)
148 2ra8_A Uncharacterized protein 99.1 7.7E-11 2.6E-15 100.9 6.0 201 59-264 108-341 (362)
149 3rw6_A Nuclear RNA export fact 98.8 3.4E-11 1.2E-15 98.3 -6.4 18 48-65 78-97 (267)
150 1io0_A Tropomodulin; LRR prote 98.8 2.4E-09 8.2E-14 83.0 2.9 120 146-266 30-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.7 2.2E-09 7.4E-14 83.2 1.7 122 96-242 28-164 (185)
152 3rw6_A Nuclear RNA export fact 98.5 1.3E-08 4.4E-13 83.1 0.8 66 203-270 168-237 (267)
153 4gt6_A Cell surface protein; l 98.5 8.8E-06 3E-10 70.4 17.6 107 176-286 260-367 (394)
154 4fs7_A Uncharacterized protein 98.5 5.9E-06 2E-10 71.5 16.2 207 59-281 163-393 (394)
155 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.9E-12 72.2 3.5 85 182-266 62-153 (176)
156 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.6E-10 69.9 16.1 196 76-285 156-375 (394)
157 3e4g_A ATP synthase subunit S, 98.3 2.9E-07 1E-11 69.9 2.6 89 197-285 53-148 (176)
158 4gt6_A Cell surface protein; l 98.1 7.3E-05 2.5E-09 64.6 14.8 104 175-284 282-386 (394)
159 4h09_A Hypothetical leucine ri 97.9 0.00052 1.8E-08 58.8 16.7 103 178-283 237-340 (379)
160 1pgv_A TMD-1, tropomodulin TMD 97.9 9.9E-06 3.4E-10 62.6 5.0 118 148-266 37-170 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 4.9E-06 1.7E-10 64.4 0.6 117 125-242 38-170 (197)
162 4h09_A Hypothetical leucine ri 97.7 0.00067 2.3E-08 58.1 13.1 153 101-263 191-343 (379)
163 3rfe_A Platelet glycoprotein I 96.7 0.0025 8.6E-08 45.7 5.3 57 184-242 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0066 2.3E-07 43.5 6.2 58 155-218 11-68 (130)
165 2lz0_A Uncharacterized protein 54.0 31 0.0011 22.7 5.4 45 92-137 8-52 (100)
166 2lz0_A Uncharacterized protein 40.9 39 0.0013 22.3 4.2 46 193-239 8-53 (100)
167 3ox7_P MH027; urokinase-type p 32.3 11 0.00039 16.8 0.2 7 48-54 8-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-42 Score=292.64 Aligned_cols=264 Identities=28% Similarity=0.459 Sum_probs=234.1
Q ss_pred CCChhhHHHHHHHHHhccCCCCCCCCCCCCCCCC--ccceEecC----CCEEEEEcCCCCccc--ccCccccccccc--c
Q 041406 16 DEQNPDEQSLISFKNALESSHNLVSWNKTNPHCY--WVGVSCQR----GRVIWLVLPTHSLKG--PLSPSLFFLSSL--S 85 (286)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~----~~l~~l~l~~~~l~~--~~~~~~~~l~~l--L 85 (286)
.|.+.|+.||++||+++.++..+.+|..+.++|. |.||+|.. .+|+.|+++++++.+ .+|..+..+++| |
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 4678899999999999976544889987666688 99999985 489999999999999 899999999999 9
Q ss_pred ccCC-CCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 86 DLSQ-NPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 86 ~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 9995 999999999999999999999999999988999999999999999999999989999999999999999999999
Q ss_pred ccccCCCCCCccccCCC-CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406 165 NGTVRDKLLPPEIGELS-LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 243 (286)
++.+ |..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 162 ~~~~-----p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 162 SGAI-----PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp EEEC-----CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cCcC-----CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 7654 67888887 899999999999888888888876 9999999998887788888888888888888888886
Q ss_pred cCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 244 SIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+|. +..+++|++|++++|++++.+|..+..++ |++|++++|
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 6555 77788888888888888888888888888 888888876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-37 Score=290.05 Aligned_cols=271 Identities=27% Similarity=0.384 Sum_probs=173.9
Q ss_pred hcCCCChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCccceEecCCCEEEEEcCCCCcccc---cCc-------------
Q 041406 13 EADDEQNPDEQSLISFKNALESSHNLVSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGP---LSP------------- 76 (286)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~---~~~------------- 76 (286)
++++..++|+.||++||+++.++..+++|..+.++|.|.||+|+..+|+.|+|+++++.|. +|+
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred ccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 3444567899999999999986545899986666699999999966999999999999886 554
Q ss_pred ----------cccccccc--cccCCCCCccccch--hhcCCCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCC
Q 041406 77 ----------SLFFLSSL--SDLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFT 141 (286)
Q Consensus 77 ----------~~~~l~~l--L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~ 141 (286)
.+..+++| |++++|.+.+.+|. .++.+++|++|++++|.+.+..|..+ ..+++|++|++++|.++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 45566666 78888888777777 78888888888888887776666544 66777777777777776
Q ss_pred CCCCcc---cCCCCCCCEEEccCCccccccCCC-----------------CCCccccCCCCCCEEEccCCcccccCChhc
Q 041406 142 GEIPSE---LGKLKNLKTLDLSGNEFNGTVRDK-----------------LLPPEIGELSLLEIFSSPSCSITGPLPEEL 201 (286)
Q Consensus 142 ~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 201 (286)
+..+.. +..+++|++|++++|.+.+..+.. .+|. +..+++|++|++++|.+++.+|..+
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence 555544 455555555555555554322110 1122 4555555555555555555555555
Q ss_pred cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCC-CCCCEEEcccCcCccccchhccCcc-cc
Q 041406 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKC-ENLMSVMLSCNALSGSLPEQLSELP-VL 279 (286)
Q Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-L~ 279 (286)
..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++.+|..+..++ |+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 55555555555555554433322 34444444444454444555554443 5666666666666666666666666 66
Q ss_pred eEEccCC
Q 041406 280 IFAAEKN 286 (286)
Q Consensus 280 ~l~l~~N 286 (286)
+|++++|
T Consensus 322 ~L~L~~n 328 (768)
T 3rgz_A 322 SLALSSN 328 (768)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-37 Score=286.55 Aligned_cols=244 Identities=24% Similarity=0.319 Sum_probs=181.8
Q ss_pred cCCCChhhHHHHHHHHHhccCCCC-CC--------CCCCCCCCCCc---cceEecCC-CEEEEEcCCCCcccccCccccc
Q 041406 14 ADDEQNPDEQSLISFKNALESSHN-LV--------SWNKTNPHCYW---VGVSCQRG-RVIWLVLPTHSLKGPLSPSLFF 80 (286)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~-~~--------~w~~~~~~c~w---~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~ 80 (286)
+++...+|+.||.++|+++.+++| .. +|+.+.+.|.| .||+|+.. +|+.|+|+++++.|.+|++++.
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 344556899999999999998877 22 69887666999 99999876 9999999999999999999999
Q ss_pred cccc--cccCCCC-------------------------------------------------------------------
Q 041406 81 LSSL--SDLSQNP------------------------------------------------------------------- 91 (286)
Q Consensus 81 l~~l--L~l~~n~------------------------------------------------------------------- 91 (286)
+++| |++++|.
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 9999 8998884
Q ss_pred -----------CccccchhhcCCCCCCEEEccCCCCCCC-----------------Cccccc--cCCCCCEEecCCCCCC
Q 041406 92 -----------LFGQLSRQVSNLKRLKQLSLGENQLSDF-----------------VPSQLG--VLTQLETLSLGSNSFT 141 (286)
Q Consensus 92 -----------~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~ 141 (286)
+++ +|..++++++|++|++++|.+++. +|..++ .+++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 334 788899999999999999999985 888888 9999999999999999
Q ss_pred CCCCcccCCCCCCCEEEccCCc-ccc-ccCCCCCCccccCC------CCCCEEEccCCcccccCCh--hccCCCCCCEEE
Q 041406 142 GEIPSELGKLKNLKTLDLSGNE-FNG-TVRDKLLPPEIGEL------SLLEIFSSPSCSITGPLPE--ELSKLKFLSMLD 211 (286)
Q Consensus 142 ~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~l------~~L~~L~l~~n~~~~~~p~--~~~~~~~L~~L~ 211 (286)
+.+|..+..+++|++|++++|. +++ .+ |..+..+ ++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l-----p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQL-----KDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHH-----HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEE
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccc-----hHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEe
Confidence 9999999999999999999998 876 33 3444443 55566666655555 4554 555555555555
Q ss_pred cccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCc
Q 041406 212 LSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALS 266 (286)
Q Consensus 212 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~ 266 (286)
+++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++
T Consensus 337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 55555554554 4444444444444444444 44444444444 444444444444
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.8e-37 Score=261.97 Aligned_cols=262 Identities=21% Similarity=0.280 Sum_probs=233.2
Q ss_pred CCCChhhHHHHHHHHHhccCCC-C-CCCCC----CCCCCCCccceEecC----------CCEEEEEcCCCCcccccCccc
Q 041406 15 DDEQNPDEQSLISFKNALESSH-N-LVSWN----KTNPHCYWVGVSCQR----------GRVIWLVLPTHSLKGPLSPSL 78 (286)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~~~~~-~-~~~w~----~~~~~c~w~gv~c~~----------~~l~~l~l~~~~l~~~~~~~~ 78 (286)
.+....|+.||++||.++..+. . ...|. .....|.|.|+.|.. .+++.|++++++++ .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 4455678999999999885443 2 67783 333349999999952 48999999999998 788889
Q ss_pred cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCC------
Q 041406 79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGK------ 150 (286)
Q Consensus 79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------ 150 (286)
..+++| |++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 999999 999999998 88999999999999999999999 57889999999999999999888888887654
Q ss_pred ---CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406 151 ---LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227 (286)
Q Consensus 151 ---l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (286)
+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.
T Consensus 179 ~~~l~~L~~L~L~~n~l~------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EEESTTCCEEEEEEECCC------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred hccCCCCCEEECcCCCcC------cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 999999999999986 35788999999999999999999 46777999999999999999999999999999
Q ss_pred CCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 228 LRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 228 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+.+++ ++.+++..|
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999 999988653
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.6e-36 Score=281.26 Aligned_cols=259 Identities=21% Similarity=0.318 Sum_probs=206.6
Q ss_pred cCCCChhhHHHHHHHHHhccCCCCCCCCCCCC-----CC--CCc------------cceEecCC-CEEEEEcCCCCcccc
Q 041406 14 ADDEQNPDEQSLISFKNALESSHNLVSWNKTN-----PH--CYW------------VGVSCQRG-RVIWLVLPTHSLKGP 73 (286)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~-~l~~l~l~~~~l~~~ 73 (286)
+++...+|+.||++||+++.++ +|+.+. .+ |.| .||+|+.. +|+.|+|+++++.|.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEE
T ss_pred ccccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCc
Confidence 4445568999999999999876 454332 34 999 99999864 999999999999999
Q ss_pred cCccccccccc--ccc-CCCCCccc-------------------------------------------------------
Q 041406 74 LSPSLFFLSSL--SDL-SQNPLFGQ------------------------------------------------------- 95 (286)
Q Consensus 74 ~~~~~~~l~~l--L~l-~~n~~~~~------------------------------------------------------- 95 (286)
+|++++.+++| |++ ++|.+.+.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 99999999999 999 66643322
Q ss_pred ---------------------cchhhcCCCCCCEEEccCCCCCC-----------------CCccccc--cCCCCCEEec
Q 041406 96 ---------------------LSRQVSNLKRLKQLSLGENQLSD-----------------FVPSQLG--VLTQLETLSL 135 (286)
Q Consensus 96 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l 135 (286)
+|..++++++|++|++++|.+++ .+|..++ .+++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 3788877 9999999999
Q ss_pred CCCCCCCCCCcccCCCCCCCEEEccCCc-ccc-ccCCCCCCccccCC-------CCCCEEEccCCcccccCCh--hccCC
Q 041406 136 GSNSFTGEIPSELGKLKNLKTLDLSGNE-FNG-TVRDKLLPPEIGEL-------SLLEIFSSPSCSITGPLPE--ELSKL 204 (286)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~~~l-------~~L~~L~l~~n~~~~~~p~--~~~~~ 204 (286)
++|.+.+.+|..+..+++|+.|++++|. +++ .+ |..+..+ ++|++|++++|.+. .+|. .+..+
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i-----P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL-----KADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH-----HHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccc-----hHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 9999999999999999999999999998 876 43 4444433 47888888888877 6676 77777
Q ss_pred CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCccccchhccCcc---cce
Q 041406 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALSGSLPEQLSELP---VLI 280 (286)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~---L~~ 280 (286)
++|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ |+.
T Consensus 573 ~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648 (876)
T ss_dssp TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence 78888888888777 666 6777777777777777777 67777777777 777777777777 6666655443 666
Q ss_pred EEccCC
Q 041406 281 FAAEKN 286 (286)
Q Consensus 281 l~l~~N 286 (286)
|++++|
T Consensus 649 L~Ls~N 654 (876)
T 4ecn_A 649 VDFSYN 654 (876)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 666654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-32 Score=257.10 Aligned_cols=223 Identities=35% Similarity=0.514 Sum_probs=191.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+.+.+|..+..+++| +++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 67788888888888888888888888 8888888888888888888888888888888887788888888888888888
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc---------------
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL--------------- 201 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~--------------- 201 (286)
+|++++.+|..+..+++|++|++++|.+.+.+ |..+..+++|++|++++|.+.+.+|..+
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-----PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-----CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcC-----CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 88888888888888888888888888887654 6788889999999999998887666543
Q ss_pred -------------------------------------------------------cCCCCCCEEEcccCCCCcccchhhh
Q 041406 202 -------------------------------------------------------SKLKFLSMLDLSENPLKCSVPKAIG 226 (286)
Q Consensus 202 -------------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (286)
..+++|+.|++++|.++|.+|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 2346788999999999999999999
Q ss_pred CCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 227 ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 227 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|+.+..++ |++|++++|
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999999999999999 999999987
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.4e-32 Score=232.98 Aligned_cols=220 Identities=24% Similarity=0.420 Sum_probs=205.9
Q ss_pred CEEEEEcCC-CCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPT-HSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~-~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 135 (286)
+++.|++++ |.+.+.+|..+..+++| |++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 789999995 99999999999999999 999999999999999999999999999999999889999999999999999
Q ss_pred CCCCCCCCCCcccCCCC-CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406 136 GSNSFTGEIPSELGKLK-NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214 (286)
Q Consensus 136 ~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 214 (286)
++|.+++.+|..+..++ +|++|++++|.+.+.. |..+..++ |++|++++|.+.+..|..+..+++|+.|++++
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-----~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-----CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-----ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 99999989999999998 9999999999998654 67888887 99999999999999999999999999999999
Q ss_pred CCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
|.+++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|.. ..++ |+.+++++|
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 999866655 788999999999999999999999999999999999999999999986 8888 999999887
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.9e-30 Score=217.96 Aligned_cols=233 Identities=24% Similarity=0.251 Sum_probs=204.0
Q ss_pred CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccc--cchhhcCCCCCCEEEcc
Q 041406 48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLG 112 (286)
Q Consensus 48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 112 (286)
|.|.++.|... +++.|++++|+++...+..+..+++| +++++|.+... .+..+..+++|++|+++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 78888888742 68999999999985444457899999 99999998743 46777889999999999
Q ss_pred CCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCC
Q 041406 113 ENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSC 191 (286)
Q Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 191 (286)
+|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-----NGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-----TTTTTTCTTCCEEECTTC
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-----hhhcccCcCCCEEECCCC
Confidence 999886 67778999999999999999985444 57889999999999999987543 567888999999999999
Q ss_pred cccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406 192 SITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 192 ~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (286)
.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 9986 578889999999999999999997778899999999999999999997666678899999999999999998889
Q ss_pred hhccCcc--cceEEccCC
Q 041406 271 EQLSELP--VLIFAAEKN 286 (286)
Q Consensus 271 ~~l~~l~--L~~l~l~~N 286 (286)
..+..++ |++|++++|
T Consensus 241 ~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SSCCCCCTTCCEEECTTC
T ss_pred HHHHhhhccCCEEEccCC
Confidence 9999985 999999987
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.7e-29 Score=223.17 Aligned_cols=222 Identities=20% Similarity=0.202 Sum_probs=200.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|++|++++..+..+..+++| |++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 78999999999999889999999999 9999999998888999999999999999999998777779999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.++...+..+..+++|+.|++++|...+.++ +..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSC
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCc
Confidence 999996666688999999999999965444443 3568889999999999999984 44 47889999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 9988899999999999999999999988888899999999999999999966667789999 999999987
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=8.9e-29 Score=219.11 Aligned_cols=222 Identities=22% Similarity=0.221 Sum_probs=200.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|++|++.+..+..+..+++| |++++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 68999999999998888899999999 9999999998888999999999999999999998777789999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.++...+..+..+++|+.|++++|...+.++ +..+..+++|++|++++|.++ .+| .+..+++|+.|++++|.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence 999996666688999999999999965544442 356888999999999999998 455 47889999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 9988889999999999999999999988888899999999999999999966667889999 999999987
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.3e-29 Score=223.60 Aligned_cols=223 Identities=21% Similarity=0.191 Sum_probs=134.1
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCcccc-chhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQL-SRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 135 (286)
+++.|++++|.+++..|..+..+++| |++++|.+.+.+ +..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 57888888888877767777777777 777777665444 345666777777777777666655666666666666666
Q ss_pred CCCCCCCCCCcc--cCCCCCCCEEEccCCccccccCCCCCCcc-ccCCCC------------------------------
Q 041406 136 GSNSFTGEIPSE--LGKLKNLKTLDLSGNEFNGTVRDKLLPPE-IGELSL------------------------------ 182 (286)
Q Consensus 136 ~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~~l~~------------------------------ 182 (286)
++|.+++..+.. +..+++|++|++++|.+.+..+ .. +..+++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-----ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-----CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCc-----ccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 666665432222 4455555555555555543221 11 223333
Q ss_pred --------------------------------------------------------------------------------
Q 041406 183 -------------------------------------------------------------------------------- 182 (286)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (286)
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence
Q ss_pred -----------CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406 183 -----------LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK 251 (286)
Q Consensus 183 -----------L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 251 (286)
|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 333333333333334444555566666666666666555556666666666666666666555556666
Q ss_pred CCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 252 CENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 252 ~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|++|++++|++++..|..+..++ |++|++++|
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 66666666666666655566666666 777766665
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.7e-28 Score=217.97 Aligned_cols=228 Identities=22% Similarity=0.230 Sum_probs=175.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchh--hcCCCCCCEEEccCCCCCCCCccc-cccCCCCCEE
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQ--VSNLKRLKQLSLGENQLSDFVPSQ-LGVLTQLETL 133 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 133 (286)
+++.|++++|.+.+..|..+..+++| |++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 67777777777776666777777777 777777776655444 677777777777777777665554 6777777777
Q ss_pred ecCCCCCCCCCCcccCC----------------------------------CCCCCEEEccCCccccccCC---------
Q 041406 134 SLGSNSFTGEIPSELGK----------------------------------LKNLKTLDLSGNEFNGTVRD--------- 170 (286)
Q Consensus 134 ~l~~n~l~~~~~~~l~~----------------------------------l~~L~~L~l~~n~~~~~~~~--------- 170 (286)
++++|.+++..+..+.. +++|++|++++|.+.+..+.
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 77777776554443322 23455555555544321100
Q ss_pred -------------------------------------------------CCCCccccCCCCCCEEEccCCcccccCChhc
Q 041406 171 -------------------------------------------------KLLPPEIGELSLLEIFSSPSCSITGPLPEEL 201 (286)
Q Consensus 171 -------------------------------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 201 (286)
...|..+..+++|++|++++|.+.+..|..+
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 0135678889999999999999998888899
Q ss_pred cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cce
Q 041406 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLI 280 (286)
Q Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~ 280 (286)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 9999999999999999977788999999999999999999988899999999999999999999965556789999 999
Q ss_pred EEccCC
Q 041406 281 FAAEKN 286 (286)
Q Consensus 281 l~l~~N 286 (286)
|++++|
T Consensus 400 L~l~~N 405 (455)
T 3v47_A 400 IWLHTN 405 (455)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 999987
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.2e-28 Score=203.43 Aligned_cols=204 Identities=22% Similarity=0.169 Sum_probs=119.6
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 135 (286)
+++.|+++++.+++..+..+..++++ +++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 56666666666665554556666666 6666666655555556666666666666665 55544555666666666666
Q ss_pred CCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccC
Q 041406 136 GSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSEN 215 (286)
Q Consensus 136 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n 215 (286)
++|.+++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccC-----HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 666666544555556666666666666654321 233555666666666666665444444555666666666666
Q ss_pred CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 6665555556666666666666666664333445556666666666666553
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3e-28 Score=207.80 Aligned_cols=238 Identities=19% Similarity=0.254 Sum_probs=144.1
Q ss_pred CCCCCCCCCC---CCccceEecC-----------CCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhc
Q 041406 38 LVSWNKTNPH---CYWVGVSCQR-----------GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVS 101 (286)
Q Consensus 38 ~~~w~~~~~~---c~w~gv~c~~-----------~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~ 101 (286)
+..|...++. |.|+.+.|.. ..++.|++++|.+++..+..+..+++| |++++|.+.+..|..|.
T Consensus 18 i~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 18 IEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp ----CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred cccccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 4455544442 6788888863 268899999999998777789999999 99999999988899999
Q ss_pred CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406 102 NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS 181 (286)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 181 (286)
.+++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.... ..+..+..++
T Consensus 98 ~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~ 171 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---IENGAFQGMK 171 (330)
T ss_dssp TCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---BCTTGGGGCT
T ss_pred CCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---cChhhccCCC
Confidence 99999999999999885 444332 67777777777777555555667777777777777664211 1234455555
Q ss_pred CCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcc
Q 041406 182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLS 261 (286)
Q Consensus 182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 261 (286)
+|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 5555555555544 2232221 344444444444443334444444444444444444443333344444444444444
Q ss_pred cCcCccccchhccCcc-cceEEccC
Q 041406 262 CNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 262 ~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
+|+++ .+|..+..++ |++|++++
T Consensus 249 ~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 249 NNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp SSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCcCc-cCChhhccCCCcCEEECCC
Confidence 44444 4444444444 44444444
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=215.62 Aligned_cols=220 Identities=21% Similarity=0.224 Sum_probs=189.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|++++..+..+..+++| |++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 79999999999998777689999999 9999999998888899999999999999999998666668999999999999
Q ss_pred CCCCCCCCCc--ccCCCCCCCEEEccCCc-cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcc
Q 041406 137 SNSFTGEIPS--ELGKLKNLKTLDLSGNE-FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS 213 (286)
Q Consensus 137 ~n~l~~~~~~--~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~ 213 (286)
+|+++ .+|. .+..+++|++|++++|. +.+ + .+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~-~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK-I----QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCE-E----CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccc-c----CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 99998 4554 78899999999999995 543 2 25678899999999999999998889999999999999999
Q ss_pred cCCCCcccch-hhhCCCCCCEEEcccccccccC-------------------------------CccCCCCCCCCEEEcc
Q 041406 214 ENPLKCSVPK-AIGELRKLGILNLGSTQLNGSI-------------------------------PAELGKCENLMSVMLS 261 (286)
Q Consensus 214 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-------------------------------~~~~~~~~~L~~L~l~ 261 (286)
+|.++ .+|. .+..+++|++|++++|.+++.. |..+..+++|++|+++
T Consensus 207 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp CSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred CCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 99997 4444 4456899999999999988632 2345678899999999
Q ss_pred cCcCccccchh-ccCcc-cceEEccCC
Q 041406 262 CNALSGSLPEQ-LSELP-VLIFAAEKN 286 (286)
Q Consensus 262 ~n~l~~~~~~~-l~~l~-L~~l~l~~N 286 (286)
+|+++ .+|.. +..++ |++|++++|
T Consensus 286 ~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 286 RNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 99999 67765 58999 999999987
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.5e-28 Score=201.98 Aligned_cols=219 Identities=21% Similarity=0.204 Sum_probs=192.0
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
.+.++.++++++ .+|..+. +.+ +++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 366777777776 3455443 455 89999999888778899999999999999999987788999999999999999
Q ss_pred CC-CCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 138 NS-FTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 138 n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
|. +....+..+..+++|++|++++|.+.+.. |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEEC-----HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 97 77555788999999999999999997533 5778899999999999999997666778999999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++ |++|++++|
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 9965556789999999999999999988899999999999999999999976667899999 999999987
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=9.3e-28 Score=199.10 Aligned_cols=215 Identities=23% Similarity=0.246 Sum_probs=185.0
Q ss_pred CCCCccceEecCC-CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406 46 PHCYWVGVSCQRG-RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 46 ~~c~w~gv~c~~~-~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 122 (286)
..|.|.|+.|... +.+.+++++++++. +|..+. ..+ |++++|.+.+..+..|..+++|++|++++|.++...+.
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 3499999999754 67899999999984 666555 345 89999999887777899999999999999999986666
Q ss_pred ccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc
Q 041406 123 QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS 202 (286)
Q Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 202 (286)
.|..+++|++|++++|.++...+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-----PRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC-----HHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 7789999999999999999666667889999999999999987533 45678999999999999999976666688
Q ss_pred CCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406 203 KLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 268 (286)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999999976666788999999999999999966666688899999999999998743
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.5e-28 Score=205.52 Aligned_cols=232 Identities=20% Similarity=0.241 Sum_probs=178.3
Q ss_pred CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCC
Q 041406 48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGEN 114 (286)
Q Consensus 48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 114 (286)
|.|..+.|... +++.|++++|.+.+..+..+..+++| +++++|.+.+..|..|+.+++|++|++++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 67888888632 68999999999998878889999999 999999999888999999999999999999
Q ss_pred CCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC--------------
Q 041406 115 QLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-------------- 180 (286)
Q Consensus 115 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l-------------- 180 (286)
.++. +|..+. ++|++|++++|.++...+..+..+++|+.|++++|.++.... .+..+..+
T Consensus 113 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 HLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---EPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp CCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS---CTTSSCSCCCSCCBCCSSBCSS
T ss_pred cCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC---CcccccCCccCEEECcCCCCCc
Confidence 9986 554443 789999999999986555678899999999999998853110 12222222
Q ss_pred ------CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406 181 ------SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN 254 (286)
Q Consensus 181 ------~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 254 (286)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 46777777777777666667777778888888888877666667777788888888888777 67777777788
Q ss_pred CCEEEcccCcCccccchhccCc------c-cceEEccCC
Q 041406 255 LMSVMLSCNALSGSLPEQLSEL------P-VLIFAAEKN 286 (286)
Q Consensus 255 L~~L~l~~n~l~~~~~~~l~~l------~-L~~l~l~~N 286 (286)
|++|++++|++++..+..+... + ++.+++++|
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 8888888888775544555432 4 777777765
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=7.6e-28 Score=215.21 Aligned_cols=223 Identities=21% Similarity=0.189 Sum_probs=171.6
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+..+..+++| |++++|.+.+..|..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 68899999999998888899999999 9999999998889999999999999999999998666678899999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-----HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-----TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeC-----hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99998777888889999999999999887543 4567777888888888887775555567777777777777777
Q ss_pred CCcccchhhhCCCCCCEEEccc------------------------ccccccCCccCCCCCCCCEEEcccCcCccccchh
Q 041406 217 LKCSVPKAIGELRKLGILNLGS------------------------TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQ 272 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 272 (286)
+.+..+..+..+++|++|++++ |.+++..+..+..+++|++|++++|++++..+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 7655444555555555555554 5554222234566677777777777777555556
Q ss_pred ccCcc-cceEEccCC
Q 041406 273 LSELP-VLIFAAEKN 286 (286)
Q Consensus 273 l~~l~-L~~l~l~~N 286 (286)
+..++ |++|++++|
T Consensus 268 ~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 268 LHELLRLQEIQLVGG 282 (477)
T ss_dssp CTTCTTCCEEECCSS
T ss_pred ccccccCCEEECCCC
Confidence 67777 777777665
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-27 Score=219.86 Aligned_cols=222 Identities=19% Similarity=0.160 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
++.|++++|.+.+..+..+..+++| |++++|.+.+..|..|+.+++|++|++++|.++...+..|..+++|++|++++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 3444444444444433444444444 44444444444444444445555555555544443333344445555555555
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc------------cccC---------------------CCCCC
Q 041406 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP------------EIGE---------------------LSLLE 184 (286)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~------------~~~~---------------------l~~L~ 184 (286)
|.+++..|..+..+++|+.|++++|.+.+... ..++. .+.. .++|+
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 55544444444445555555555554432110 00000 0000 01222
Q ss_pred EEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406 185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264 (286)
Q Consensus 185 ~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 264 (286)
.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.
T Consensus 236 ~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred EEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 22333333322 2335556667777777777766666677777777777777777763 45555566777777777777
Q ss_pred CccccchhccCcc-cceEEccCC
Q 041406 265 LSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 265 l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++ .+|..+..++ |+.|++++|
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSS
T ss_pred CC-ccCcccccCCCCCEEECCCC
Confidence 76 5666666666 666666655
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.1e-27 Score=216.92 Aligned_cols=107 Identities=25% Similarity=0.330 Sum_probs=84.0
Q ss_pred CCCCCEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEE
Q 041406 180 LSLLEIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSV 258 (286)
Q Consensus 180 l~~L~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 258 (286)
++.+++|++++|.+. +..|..+..+++|++|++++|.+++..|..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 344555555555432 2355667778888888888888887778888888899999999998887777778888899999
Q ss_pred EcccCcCccccchhccCcc--cceEEccCC
Q 041406 259 MLSCNALSGSLPEQLSELP--VLIFAAEKN 286 (286)
Q Consensus 259 ~l~~n~l~~~~~~~l~~l~--L~~l~l~~N 286 (286)
++++|++++..|+.+..++ |++|++++|
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 9999999888888888884 889988887
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.8e-27 Score=205.42 Aligned_cols=223 Identities=19% Similarity=0.161 Sum_probs=116.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+..+..+++| |++++|.+.+..|..++.+++|++|++++|.++...+..|..+++|++|+++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 34455555555554444445555555 5555555555445555555555555555555554333334555555555555
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc------------cccC---------------------CCCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP------------EIGE---------------------LSLL 183 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~------------~~~~---------------------l~~L 183 (286)
+|.+++..+..+..+++|++|++++|.+++... ..++. .+.. .++|
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG-GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCcccc-ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 555554444445555555555555555543110 00000 0000 0123
Q ss_pred CEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccC
Q 041406 184 EIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCN 263 (286)
Q Consensus 184 ~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 263 (286)
++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++..+..+++|++|++++|
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 3333333333321 234455666667777776665556666667777777777776663 4444556667777777777
Q ss_pred cCccccchhccCcc-cceEEccCC
Q 041406 264 ALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 264 ~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++ .+|..+..++ |++|++++|
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSS
T ss_pred cce-ecCccccccCcCCEEECCCC
Confidence 666 5555555566 666666654
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-27 Score=202.63 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=186.4
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCcccccc---------C
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGV---------L 127 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---------l 127 (286)
+++.|++++|.+. .+|..+..+++| |++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 7999999999999 889999999999 999999998 78999999999999999999888888877654 9
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL 207 (286)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L 207 (286)
++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 99999999999999 889999999999999999999974 46789999999999999999999999999999999
Q ss_pred CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7e-27 Score=214.78 Aligned_cols=223 Identities=22% Similarity=0.212 Sum_probs=118.8
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccch-hhcCCCCCCEEEccCCCCCCCC--ccccccCCCCCEE
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSR-QVSNLKRLKQLSLGENQLSDFV--PSQLGVLTQLETL 133 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L 133 (286)
+++.|++++|.+.+..|..+..++.| +++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 34444444444444434444444444 44444444333322 2444445555555555444332 3344555555555
Q ss_pred ecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcc
Q 041406 134 SLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLS 213 (286)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~ 213 (286)
++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 555555554445555555555555555555543221 2235556666666666666665555556666666666666
Q ss_pred cCCCCcc---cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 214 ENPLKCS---VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 214 ~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|+.+..++ | +|++++|
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 6666542 123455566666666666666655555666666666666666666655556666665 5 5655554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=209.91 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=140.5
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|++|.+.+..|..+..+++| |++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 67778888877777777777777777 7777777765555566777777777777777776666666677777777777
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCC-------------------CCCCccccCCCC---------------
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD-------------------KLLPPEIGELSL--------------- 182 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-------------------~~~~~~~~~l~~--------------- 182 (286)
+|.+.+..+..+..+++|+.|++++|.+++..+. ...+..+..+++
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc
Confidence 7776655555666666666666666655432100 000112333333
Q ss_pred ---------CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCC
Q 041406 183 ---------LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE 253 (286)
Q Consensus 183 ---------L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 253 (286)
|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++
T Consensus 217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 33333334444422223455556666666666666644445556666666666666666665566666677
Q ss_pred CCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 254 NLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+|++|++++|++++..+..+..++ |+.|++++|
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 777777777777654445566666 777777665
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7.4e-27 Score=214.63 Aligned_cols=222 Identities=20% Similarity=0.184 Sum_probs=158.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
.++.|++++|.+++..|.++..+++| |++++|.+.+..|..|+++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 78999999999998888889999999 9999999988888889999999999999999988778888999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC--EEEccc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS--MLDLSE 214 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~--~L~l~~ 214 (286)
+|.+++..+..+..+++|++|++++|.+.+... | .+..+++|++|++++|.+++..|..+..+++|+ .|++++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~----~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKL----P-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC----C-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCc----c-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999886556678888889999998888865321 2 222366666666666666655555555555555 455555
Q ss_pred CCCCcc--------------------------------------------------------------------------
Q 041406 215 NPLKCS-------------------------------------------------------------------------- 220 (286)
Q Consensus 215 n~l~~~-------------------------------------------------------------------------- 220 (286)
|.+++.
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 544322
Q ss_pred -cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 221 -VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 221 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+..++.+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++ |++|++++|
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 2223445566666666666666 5566666666666666666666655455555555 666555544
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=6.9e-27 Score=203.82 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=180.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+.+..|..+..+++| |++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 89999999999998888889999999 9999999986555567999999999999999998778889999999999999
Q ss_pred CCCCCCCCCcccCCC-------------------------------------CCCCEEEccCCccccccCCCCCCccccC
Q 041406 137 SNSFTGEIPSELGKL-------------------------------------KNLKTLDLSGNEFNGTVRDKLLPPEIGE 179 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 179 (286)
+|.+++.....+..+ ++|+.|++++|.+.+ ...+..
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-------~~~l~~ 246 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-------TAWLLN 246 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-------CGGGGG
T ss_pred CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-------cHHHcC
Confidence 999985322222111 134444444444432 256788
Q ss_pred CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM 259 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 259 (286)
+++|++|++++|.+.+..|..+..+++|++|++++|.++ .++..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 999999999999999888999999999999999999998 46677778999999999999998 6777788899999999
Q ss_pred cccCcCccccchhccCcc-cceEEccCC
Q 041406 260 LSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 260 l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|+++ .++ +..++ |++|++++|
T Consensus 325 L~~N~i~-~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 325 LDHNSIV-TLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCSSCCC-CCC--CCTTCCCSEEECCSS
T ss_pred CCCCccc-eeC--chhhccCCEEEcCCC
Confidence 9999998 444 67788 999999987
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=223.23 Aligned_cols=142 Identities=24% Similarity=0.284 Sum_probs=82.5
Q ss_pred CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCcccc-chhhcCCCCCCEEEccCCCCCCCCcccc
Q 041406 48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQL-SRQVSNLKRLKQLSLGENQLSDFVPSQL 124 (286)
Q Consensus 48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 124 (286)
|.|..|.+.+.+++.|+|++|.+++..+..+..+++| |++++|...+.+ |..|+++++|++|++++|.+.+..|..|
T Consensus 14 ~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 14 CNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 4455555533477777887777777666666666666 666666544444 5556666666666666666666556666
Q ss_pred ccCCCCCEEecCCCCCCCCCCcc--cCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcc
Q 041406 125 GVLTQLETLSLGSNSFTGEIPSE--LGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSI 193 (286)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 193 (286)
..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+ +..+.++++|++|++++|.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL----HPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----CGGGGTCSSCCEEEEESSCC
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc----chhHhhCCCCCEEECCCCcC
Confidence 66666666666666665444432 5555566666666555543221 23344444444444444433
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-26 Score=213.39 Aligned_cols=216 Identities=19% Similarity=0.164 Sum_probs=182.5
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|++|.+.+..|..+..+++| |++++|.+.+..+..|+.+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 89999999999999888889999999 9999999987666668999999999999999999888889999999999999
Q ss_pred CCCCCCCCCcccCCC-------------------------------------CCCCEEEccCCccccccCCCCCCccccC
Q 041406 137 SNSFTGEIPSELGKL-------------------------------------KNLKTLDLSGNEFNGTVRDKLLPPEIGE 179 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l-------------------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 179 (286)
+|.+++.....+..+ ++|+.|++++|.+++ +..+..
T Consensus 180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-------~~~l~~ 252 (597)
T 3oja_B 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-------TAWLLN 252 (597)
T ss_dssp TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-------CGGGGG
T ss_pred CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-------Chhhcc
Confidence 999985422222111 124444444444432 356888
Q ss_pred CCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406 180 LSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM 259 (286)
Q Consensus 180 l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 259 (286)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|++|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 9999999999999998889999999999999999999984 6777788999999999999998 6787788899999999
Q ss_pred cccCcCccccchhccCcc-cceEEccCC
Q 041406 260 LSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 260 l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|.+++ ++ +..++ |+.|++++|
T Consensus 331 L~~N~l~~-~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 331 LDHNSIVT-LK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCSSCCCC-CC--CCTTCCCSEEECCSS
T ss_pred CCCCCCCC-cC--hhhcCCCCEEEeeCC
Confidence 99999984 33 67788 999999987
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.9e-27 Score=214.82 Aligned_cols=142 Identities=22% Similarity=0.221 Sum_probs=123.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..|..+..+++| |++++|.+.+..|..|..+++|++|++++|.+++..+..|+.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 79999999999998888899999999 9999999998888999999999999999999999777779999999999999
Q ss_pred CCCCCC-CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCC
Q 041406 137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKL 204 (286)
Q Consensus 137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~ 204 (286)
+|.+++ ..|..+..+++|++|++++|.+.+.++ +..+.++++|++|++++|.+.+..|..+..+
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 999985 356788999999999999998544443 3567888899999999998887777665543
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.2e-28 Score=222.05 Aligned_cols=218 Identities=18% Similarity=0.286 Sum_probs=178.8
Q ss_pred CEEEEEcCCCCcccc-----------------cCcccc--ccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-C
Q 041406 59 RVIWLVLPTHSLKGP-----------------LSPSLF--FLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-L 116 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~-----------------~~~~~~--~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l 116 (286)
+++.|++++|.++|. +|..+. .+++| |++++|.+.+.+|..++++++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 899999999999986 999998 99999 9999999999999999999999999999998 8
Q ss_pred CC-CCccccccC------CCCCEEecCCCCCCCCCCc--ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEE
Q 041406 117 SD-FVPSQLGVL------TQLETLSLGSNSFTGEIPS--ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFS 187 (286)
Q Consensus 117 ~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~ 187 (286)
++ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|++|++++|.+.|.+ | .+..+++|++|+
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-----p-~~~~l~~L~~L~ 359 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL-----P-AFGSEIKLASLN 359 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC-----C-CCEEEEEESEEE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch-----h-hhCCCCCCCEEE
Confidence 87 788888776 99999999999999 8888 8999999999999999998665 4 667777788888
Q ss_pred ccCCcccccCChhccCCCC-CCEEEcccCCCCcccchhhhCCC--CCCEEEcccccccccCCccCC-------CCCCCCE
Q 041406 188 SPSCSITGPLPEELSKLKF-LSMLDLSENPLKCSVPKAIGELR--KLGILNLGSTQLNGSIPAELG-------KCENLMS 257 (286)
Q Consensus 188 l~~n~~~~~~p~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~ 257 (286)
+++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+. .+++|++
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 8888777 67777777777 888888888877 6676665543 777778877777777776666 5667777
Q ss_pred EEcccCcCccccch-hccCcc-cceEEccCC
Q 041406 258 VMLSCNALSGSLPE-QLSELP-VLIFAAEKN 286 (286)
Q Consensus 258 L~l~~n~l~~~~~~-~l~~l~-L~~l~l~~N 286 (286)
|++++|+++ .+|. .+..++ |++|++++|
T Consensus 438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp EECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred EECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 777777777 4554 344566 777777765
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.8e-26 Score=214.84 Aligned_cols=222 Identities=26% Similarity=0.228 Sum_probs=163.3
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+..+..+++| +++++|.+.+..|..|+++++|++|++++|.++...+..|..+++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 78999999999988777788889888 9999999988888889999999999999999887655678889999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc--CCCCCCEEEccc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS--KLKFLSMLDLSE 214 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~--~~~~L~~L~l~~ 214 (286)
+|.+++..+..+..+++|++|++++|.+.+.. |..+..+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-----LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-----CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccC-----chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99988666677888999999999999887543 45667777888888888777755444332 345666666666
Q ss_pred CCCCcccch---------------------------------------------------hhhCCC--CCCEEEcccccc
Q 041406 215 NPLKCSVPK---------------------------------------------------AIGELR--KLGILNLGSTQL 241 (286)
Q Consensus 215 n~l~~~~~~---------------------------------------------------~~~~l~--~L~~L~L~~n~l 241 (286)
|.+++..|. .+..++ +|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 666544333 333332 366666666666
Q ss_pred cccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406 242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
++..+..+..+++|++|++++|++++..|..+..++ |++|++++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 655555666666666666666666666666666666 66666654
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6.6e-26 Score=193.27 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=137.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..|..+..+++| |++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|+++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 77 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 79999999999998888899999998 899999886 4454433 678888888888777666667777888888888
Q ss_pred CCCCCC--CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406 137 SNSFTG--EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214 (286)
Q Consensus 137 ~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 214 (286)
+|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 877752 455667777777777777777653 222222 5566666666666655555566666666666666
Q ss_pred CCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhc
Q 041406 215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQL 273 (286)
Q Consensus 215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 273 (286)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 6666544445566666666666666665 555556666666666666666654333333
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.6e-28 Score=205.08 Aligned_cols=218 Identities=23% Similarity=0.219 Sum_probs=153.7
Q ss_pred EEEEEcCCCCc-ccccCcccc-------ccccc--cccCCCCCccccchhh--cCCCCCCEEEccCCCCCCCCccccccC
Q 041406 60 VIWLVLPTHSL-KGPLSPSLF-------FLSSL--SDLSQNPLFGQLSRQV--SNLKRLKQLSLGENQLSDFVPSQLGVL 127 (286)
Q Consensus 60 l~~l~l~~~~l-~~~~~~~~~-------~l~~l--L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l 127 (286)
++.|++++|.+ .+.+|..+. .++++ |++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 34445555555 233444333 46666 7788888877777765 7778888888888888775 6666665
Q ss_pred -----CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccc--cCCCCCCEEEccCCcccc--cCC
Q 041406 128 -----TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEI--GELSLLEIFSSPSCSITG--PLP 198 (286)
Q Consensus 128 -----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~--~~p 198 (286)
++|++|++++|++.+..+..+..+++|++|++++|.+.+..+ ++..+ ..+++|++|++++|.+++ .++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG---LISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---HHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---HHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 788888888888876666778888888888888887654321 12233 677888888888888772 122
Q ss_pred -hhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCc
Q 041406 199 -EELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSEL 276 (286)
Q Consensus 199 -~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 276 (286)
..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 334567788888888888876553 44556788888888888887 6776665 7888888888888854 65 7788
Q ss_pred c-cceEEccCC
Q 041406 277 P-VLIFAAEKN 286 (286)
Q Consensus 277 ~-L~~l~l~~N 286 (286)
+ |++|++++|
T Consensus 296 ~~L~~L~L~~N 306 (312)
T 1wwl_A 296 PQVGNLSLKGN 306 (312)
T ss_dssp CEEEEEECTTC
T ss_pred CCCCEEeccCC
Confidence 8 888888877
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-26 Score=194.28 Aligned_cols=218 Identities=21% Similarity=0.184 Sum_probs=189.0
Q ss_pred EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC--CccccccCCCCCEEecC
Q 041406 61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLSLG 136 (286)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~ 136 (286)
+.+++++++++ .+|..+. +.+ +++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 47889988887 4565544 455 89999999865556689999999999999998853 25667789999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+. .+|..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 99998 677788999999999999999875331 2468889999999999999998888889999999999999999
Q ss_pred CCc-ccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKC-SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 986 5788899999999999999999988888899999999999999999976666889999 999999987
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.8e-26 Score=199.57 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=186.2
Q ss_pred EEEcCCCCcccccCccccccccccccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCC
Q 041406 62 WLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT 141 (286)
Q Consensus 62 ~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (286)
.++..+.+++ .+|..+..-...|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|.++
T Consensus 47 ~v~c~~~~l~-~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCS-SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcC-cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 4445555555 566666533333999999999888899999999999999999999887889999999999999999999
Q ss_pred CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-ChhccCCCCCCEEEcccCCCCcc
Q 041406 142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL-PEELSKLKFLSMLDLSENPLKCS 220 (286)
Q Consensus 142 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~~~~L~~L~l~~n~l~~~ 220 (286)
...+..+..+++|++|++++|.+.... +..+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++ .
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred eeCHhHhhccccCceeeCCCCcccccC-----HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 665667999999999999999997433 457889999999999996544444 457889999999999999998 5
Q ss_pred cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 221 VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 221 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 55 478899999999999999988899999999999999999999988888999999 999999987
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=208.33 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=85.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..|..+..+++| |++++|.+.+..|..|+++++|++|++++|.++. +|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEecc
Confidence 78888888888887777788888888 8888888888878888888888888888888885 5554 78888888888
Q ss_pred CCCCCC-CCCcccCCCCCCCEEEccCCccc
Q 041406 137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFN 165 (286)
Q Consensus 137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~ 165 (286)
+|.+++ .+|..++.+++|++|++++|.+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 888875 46778888888888888888765
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=6.5e-26 Score=188.52 Aligned_cols=207 Identities=24% Similarity=0.239 Sum_probs=169.8
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|++++..+..+..+++| +++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 68999999999987777788888888 8999999887777788899999999999999988777788899999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC----EEEc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS----MLDL 212 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~----~L~l 212 (286)
+|.+.+..+..+..+++|++|++++|.+.+. .+|..+..+++|++|++++|.+++..+..+..+++|+ .|++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCccccCchhcccCCCCCEEECcCCcccee----cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9998866565788899999999999988642 2478888999999999999999876666666665666 8999
Q ss_pred ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406 213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (286)
++|.+++. +.......+|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 185 s~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 185 SLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99999844 4444445589999999999986655667888999999999999886544
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-25 Score=187.21 Aligned_cols=212 Identities=23% Similarity=0.212 Sum_probs=177.6
Q ss_pred CCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCC
Q 041406 66 PTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGE 143 (286)
Q Consensus 66 ~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (286)
.+.++. .+|..+. +.+ +++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 15 ~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 15 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 333333 3455444 345 89999999888777899999999999999999987777899999999999999999977
Q ss_pred CCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc-CChhccCCCCCCEEEcccCCCCcccc
Q 041406 144 IPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP-LPEELSKLKFLSMLDLSENPLKCSVP 222 (286)
Q Consensus 144 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~l~~~~~ 222 (286)
.+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ChhhhcCCccccEEECCCCCccccC-----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 7788999999999999999987533 34688999999999999999863 68899999999999999999997666
Q ss_pred hhhhCCCCCC----EEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 223 KAIGELRKLG----ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 223 ~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+..+..++ |++|++++|
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 7777666666 89999999996555444 456899999999999965556788999 999999987
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=199.49 Aligned_cols=214 Identities=18% Similarity=0.172 Sum_probs=184.4
Q ss_pred EEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC
Q 041406 63 LVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF 140 (286)
Q Consensus 63 l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 140 (286)
++.++.+++ .+|..+. +++ |++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 444445554 4565554 344 89999999998899999999999999999999998888999999999999999999
Q ss_pred CCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcccCCCCc
Q 041406 141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLSENPLKC 219 (286)
Q Consensus 141 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~l~~ 219 (286)
+...+..+..+++|++|++++|.+.... +..+..+++|++|++++|+..+.++ ..+..+++|++|++++|.+++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIP-----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEEC-----TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CccChhhhcccCCCCEEECCCCCcceeC-----HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9666667899999999999999997432 4578899999999999965444444 468899999999999999984
Q ss_pred ccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 220 SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 220 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+| .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 44 578899999999999999988889999999999999999999988888999999 999999987
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.2e-26 Score=210.43 Aligned_cols=202 Identities=22% Similarity=0.190 Sum_probs=146.2
Q ss_pred ccccccc--cccCCCCCccc--cchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCC
Q 041406 78 LFFLSSL--SDLSQNPLFGQ--LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLK 152 (286)
Q Consensus 78 ~~~l~~l--L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~ 152 (286)
+..+++| +++++|.+.+. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 3344555 66666666544 25666777777777777777665 44666777777777777777775555 4667777
Q ss_pred CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC
Q 041406 153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL 231 (286)
Q Consensus 153 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 231 (286)
+|++|++++|.+.+.. |..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 425 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDF-----DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TCCEEECTTSCCEECC-----TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCEEECcCCCCCccc-----hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 7777777777776433 5667777888888888888776 367777778888888888888877667777788888
Q ss_pred CEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc--cceEEccCC
Q 041406 232 GILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP--VLIFAAEKN 286 (286)
Q Consensus 232 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--L~~l~l~~N 286 (286)
++|++++|++++..|..+..+++|++|++++|+++ .+|..+..++ |+++++++|
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 88888888887777777777888888888888877 6777677775 888888776
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.2e-25 Score=191.90 Aligned_cols=223 Identities=18% Similarity=0.214 Sum_probs=178.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..|..+..+++| |++++|.+. .+|..+. ++|++|++++|.++...+..+..+++|++|+++
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 79999999999998888999999999 999999987 4555444 789999999999988766778899999999999
Q ss_pred CCCCCC--CCCcccCCCCCCCEEEccCCccccccC----------------CCCCCccccCCCCCCEEEccCCcccccCC
Q 041406 137 SNSFTG--EIPSELGKLKNLKTLDLSGNEFNGTVR----------------DKLLPPEIGELSLLEIFSSPSCSITGPLP 198 (286)
Q Consensus 137 ~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~----------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 198 (286)
+|.++. ..+..+..+ +|+.|++++|.+++... ....+..+..+++|++|++++|.+.+..+
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 998852 445555544 45555544444432110 01224678889999999999999998777
Q ss_pred hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC------CCCCCEEEcccCcCc--cccc
Q 041406 199 EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK------CENLMSVMLSCNALS--GSLP 270 (286)
Q Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~ 270 (286)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|++. +..|
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 78999999999999999998 78888999999999999999999766665654 367999999999987 5667
Q ss_pred hhccCcc-cceEEccCC
Q 041406 271 EQLSELP-VLIFAAEKN 286 (286)
Q Consensus 271 ~~l~~l~-L~~l~l~~N 286 (286)
..+..++ |+.+++++|
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 7899999 999999886
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.3e-27 Score=200.77 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=182.9
Q ss_pred eEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCC-ccccchhhc-------CCCCCCEEEccCCCCCCCCcc
Q 041406 53 VSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPL-FGQLSRQVS-------NLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 53 v~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~ 122 (286)
+.|...+++.+++++|.+ .+|..+... + +++++|.+ ...+|..+. .+++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 344444788889999998 677766655 5 89999988 445676665 799999999999999988888
Q ss_pred cc--ccCCCCCEEecCCCCCCCCCCcccCCC-----CCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406 123 QL--GVLTQLETLSLGSNSFTGEIPSELGKL-----KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 123 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (286)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+.. |..+..+++|++|++++|.+.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-----CEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC-----TTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch-----HHHhccCCCCCEEECCCCCcCc
Confidence 76 8999999999999999966 7777766 89999999999997543 4788999999999999999876
Q ss_pred c--CChhc--cCCCCCCEEEcccCCCCc--ccc-hhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCcc
Q 041406 196 P--LPEEL--SKLKFLSMLDLSENPLKC--SVP-KAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 196 ~--~p~~~--~~~~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~ 267 (286)
. .+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 5 34444 789999999999999983 222 344688999999999999997664 45667899999999999999
Q ss_pred ccchhccCcc-cceEEccCC
Q 041406 268 SLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 268 ~~~~~l~~l~-L~~l~l~~N 286 (286)
.+|..+. + |++|++++|
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp SCCSSCC--SEEEEEECCSS
T ss_pred hhhhhcc--CCceEEECCCC
Confidence 8888776 7 999999987
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.5e-25 Score=207.14 Aligned_cols=223 Identities=21% Similarity=0.249 Sum_probs=161.7
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccc-hhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS-RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 135 (286)
.++.+++++|.+.+..|..+..+++| +++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 46666677777776666677777777 7777777766555 56677777777777777777666667777777777777
Q ss_pred CCCCCC--CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC--------hhccCCC
Q 041406 136 GSNSFT--GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP--------EELSKLK 205 (286)
Q Consensus 136 ~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--------~~~~~~~ 205 (286)
++|.+. +..|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..++
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-----DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCC-----hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 777765 456677777888888888888776432 4557778888888888888774321 2366778
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhcc-Ccc-cceEEc
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLS-ELP-VLIFAA 283 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~-L~~l~l 283 (286)
+|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+. .++ |+.+++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 888888888888733334577888888888888888855555567788888888888888866666666 677 888888
Q ss_pred cCC
Q 041406 284 EKN 286 (286)
Q Consensus 284 ~~N 286 (286)
++|
T Consensus 617 ~~N 619 (680)
T 1ziw_A 617 RFN 619 (680)
T ss_dssp TTC
T ss_pred cCC
Confidence 776
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=5e-26 Score=209.10 Aligned_cols=218 Identities=18% Similarity=0.111 Sum_probs=183.6
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC--CccccccCCCCCEEe
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF--VPSQLGVLTQLETLS 134 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ 134 (286)
+++.|++++|.+ +.+| .+ .++++ +++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 308 ~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred cCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 566777777776 4555 34 66666 777777544433 456788888888888888764 367788899999999
Q ss_pred cCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406 135 LGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214 (286)
Q Consensus 135 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 214 (286)
+++|.++ .+|..+..+++|+.|++++|.+.+..+ ...+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 383 L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTT----TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred CCCCccc-cchhhccCCCCCCeeECCCCccCCccC----hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 9999987 566788899999999999999876432 15788899999999999999988899999999999999999
Q ss_pred CCCCcc-cchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 215 NPLKCS-VPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 215 n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
|.+++. +|..++.+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ |++|++++|
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 999873 788899999999999999999988888999999999999999999988899999999 999999987
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=8.5e-26 Score=205.92 Aligned_cols=225 Identities=21% Similarity=0.229 Sum_probs=174.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+..+..+++| |++++|.+.+..|..|.++++|++|++++|.++. +|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECC
Confidence 79999999999998888899999999 9999999998889999999999999999999985 5554 78999999999
Q ss_pred CCCCCC-CCCcccCCCCCCCEEEccCCccccccC--------------------CCCCCccccCCC--------------
Q 041406 137 SNSFTG-EIPSELGKLKNLKTLDLSGNEFNGTVR--------------------DKLLPPEIGELS-------------- 181 (286)
Q Consensus 137 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~~~~~l~-------------- 181 (286)
+|.+++ ..|..+..+++|++|++++|.+.+... ....|..+..+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 999985 345788999999999999988753110 001122222211
Q ss_pred -------------------------------------------------------------------CCCEEEccCCccc
Q 041406 182 -------------------------------------------------------------------LLEIFSSPSCSIT 194 (286)
Q Consensus 182 -------------------------------------------------------------------~L~~L~l~~n~~~ 194 (286)
+|++|++++|.+.
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 5666666666666
Q ss_pred ccCChhc-----------------------------------------------------cCCCCCCEEEcccCCCCccc
Q 041406 195 GPLPEEL-----------------------------------------------------SKLKFLSMLDLSENPLKCSV 221 (286)
Q Consensus 195 ~~~p~~~-----------------------------------------------------~~~~~L~~L~l~~n~l~~~~ 221 (286)
+.+|..+ ..+++|++|++++|.+++..
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence 5555443 56678888888888888777
Q ss_pred chhhhCCCCCCEEEcccccccc--cCCccCCCCCCCCEEEcccCcCccccch-hccCcc-cceEEccCC
Q 041406 222 PKAIGELRKLGILNLGSTQLNG--SIPAELGKCENLMSVMLSCNALSGSLPE-QLSELP-VLIFAAEKN 286 (286)
Q Consensus 222 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~-L~~l~l~~N 286 (286)
|..++.+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|. .+..++ |++|++++|
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 7888888888888888888875 2345677888888888888888865665 477777 888888876
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-24 Score=179.79 Aligned_cols=194 Identities=23% Similarity=0.245 Sum_probs=168.1
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++++++.++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 21 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 788888886 4565443 6899999999999987777899999999999999999955555678899999999999998
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 98 ~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 98 QALP-----IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CCCC-----TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCC-----HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 7432 35678899999999999999987778889999999999999999966556688999999999999999976
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+..+..+++|++|++++|++++..+..+..++ |+.|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 666788999999999999999965556788999 999999987
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.3e-25 Score=209.36 Aligned_cols=221 Identities=19% Similarity=0.271 Sum_probs=122.5
Q ss_pred CEEEEEcCCCC-ccc-ccCccccccc-------cc--cccCCCCCccccch--hhcCCCCCCEEEccCCCCCCCCccccc
Q 041406 59 RVIWLVLPTHS-LKG-PLSPSLFFLS-------SL--SDLSQNPLFGQLSR--QVSNLKRLKQLSLGENQLSDFVPSQLG 125 (286)
Q Consensus 59 ~l~~l~l~~~~-l~~-~~~~~~~~l~-------~l--L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (286)
+++.|++++|. ++| .+|..+..+. +| |++++|.+. .+|. .++.+++|+.|++++|.++ .+| .+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 56777777776 666 5666555444 55 666666665 5555 5666666666666666655 344 455
Q ss_pred cCCCCCEEecCCCCCCCCCCcccCCCCC-CCEEEccCCccc-------------------------cccCCC--------
Q 041406 126 VLTQLETLSLGSNSFTGEIPSELGKLKN-LKTLDLSGNEFN-------------------------GTVRDK-------- 171 (286)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~-------------------------~~~~~~-------- 171 (286)
.+++|++|++++|.++ .+|..+..+++ |+.|++++|.+. +.++..
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 5555555555555555 44444444444 444444444443 222110
Q ss_pred ---------------CCCcccc-CCCCCCEEEccCCcccccCChhccCC--------CCCCEEEcccCCCCcccchhhh-
Q 041406 172 ---------------LLPPEIG-ELSLLEIFSSPSCSITGPLPEELSKL--------KFLSMLDLSENPLKCSVPKAIG- 226 (286)
Q Consensus 172 ---------------~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~--------~~L~~L~l~~n~l~~~~~~~~~- 226 (286)
.+|..+. .+++|++|++++|.+. .+|..+... ++|+.|++++|.++ .+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence 1222222 3455555555555555 333332221 15666666666665 5555554
Q ss_pred -CCCCCCEEEcccccccccCCccCCCCCCCCEEEccc------CcCccccchhccCcc-cceEEccCC
Q 041406 227 -ELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSC------NALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 227 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.+|..+..++ |+.|++++|
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 66666666666666664 565566666666666654 555666666666666 666666665
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5e-26 Score=203.69 Aligned_cols=209 Identities=22% Similarity=0.192 Sum_probs=165.5
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+|++|.+.+..|..+..+++| |++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 79999999999998888889999999 9999999987666 889999999999999887632 23788888888
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhcc-CCCCCCEEEcccC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELS-KLKFLSMLDLSEN 215 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~~~~L~~L~l~~n 215 (286)
+|.+++..+. .+++|+.|++++|.+.+.. |..+..+++|++|++++|.+++..|..+. .+++|++|++++|
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 8888754332 4577888888888887543 45677788888888888888877776665 6788888888888
Q ss_pred CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++ |+.|++++|
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred ccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 88744 22 3357888888888888885 4445777888888888888888 4777788888 888888876
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.9e-25 Score=182.41 Aligned_cols=203 Identities=21% Similarity=0.228 Sum_probs=176.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+++++.+.. .+.+..++++ +++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 79999999998874 3457888888 99999998763 478899999999999999998777778999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-----KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccC-----HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999766667899999999999999987432 4557889999999999999997777778899999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (286)
+++..+..+..+++|++|++++|.+.+ .++.|+.++++.|.++|.+|.+++.++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 997777778999999999999998764 356789999999999999999887765
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.2e-25 Score=198.83 Aligned_cols=125 Identities=23% Similarity=0.291 Sum_probs=109.8
Q ss_pred EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCC
Q 041406 61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSN 138 (286)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 138 (286)
+.+++++++++ .+|..+. +++ +++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999999 5777766 667 999999999888899999999999999999999987889999999999999999
Q ss_pred CCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406 139 SFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 139 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (286)
.++ .+|.. .+++|++|++++|.+.+. .+|..++.+++|++|++++|.+.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~----~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDAL----PICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSC----CCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cee-ecCcc--ccCCccEEeccCCccccc----cchhhhccCCcceEEEecCcccch
Confidence 998 67765 899999999999998752 246888899999999998887753
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=6e-25 Score=209.08 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 46777777777777666777777888888888888888766777888888888888888887776777888888888888
Q ss_pred ccCcCccccchhccCcc-cceEEccCC
Q 041406 261 SCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 261 ~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++|++.+..+..+..++ |+.|++++|
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCC
Confidence 88888766666778888 888888776
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.8e-26 Score=194.98 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=185.8
Q ss_pred CCCCCCCCCCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCC
Q 041406 40 SWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLS 117 (286)
Q Consensus 40 ~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 117 (286)
.|......|.|.++ | ++++++++ .+|..+.. .+ |++++|.+.+..+..+.++++|++|++++|.++
T Consensus 22 ~~~~~~~~C~~~~~-c--------~~~~~~l~-~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 22 SSNQASLSCDRNGI-C--------KGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89 (353)
T ss_dssp -----CCEECTTSE-E--------ECCSTTCS-SCCTTCCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCccCCCCCCCeE-e--------eCCCCCcc-cccccccc--cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC
Confidence 34444444888876 5 35667776 45665543 56 999999998877778999999999999999999
Q ss_pred CCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc--cccCCCCCCEEEccCCc-cc
Q 041406 118 DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP--EIGELSLLEIFSSPSCS-IT 194 (286)
Q Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~-~~ 194 (286)
+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ +|. .+..+++|++|++++|+ +.
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 90 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------LGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------SCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------cCchhhhccCCCCcEEECCCCcccc
Confidence 8778889999999999999999995444458999999999999999864 333 68889999999999994 66
Q ss_pred ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc------
Q 041406 195 GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS------ 268 (286)
Q Consensus 195 ~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~------ 268 (286)
+..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 66677899999999999999999988899999999999999999998743333344578999999999998863
Q ss_pred -------------------------cchhccCcc-cceEEccCC
Q 041406 269 -------------------------LPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 269 -------------------------~~~~l~~l~-L~~l~l~~N 286 (286)
+|+.+..++ |++|++++|
T Consensus 244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 455677888 999999887
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-26 Score=192.06 Aligned_cols=209 Identities=22% Similarity=0.182 Sum_probs=124.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..|..+..+++| |++++|.+.+..+ +..+++|++|++++|.+++. ...++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECC
Confidence 57777777777776666667777777 7777777765544 66777777777777766542 123566666666
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc-cCCCCCCEEEcccC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL-SKLKFLSMLDLSEN 215 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~~~~L~~L~l~~n 215 (286)
+|.+++..+. .+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 6666532222 2455666666666665322 2345556666666666666665444443 24556666666666
Q ss_pred CCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 216 PLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 216 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+++. +. ...+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..++ |+.|++++|
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred cCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 66532 22 2235666666666666653 3334555666666666666666 4555566666 666666654
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.3e-24 Score=198.03 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=110.5
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
..+.++++++++++ +|..+. +.+ |++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34889999999995 777665 566 9999999998888999999999999999999999888899999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (286)
+|.++ .+|.. .+++|++|++++|.+.+.. +|..+.++++|++|++++|.+.+
T Consensus 109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TSCCC-EECSC--CCTTCSEEECCSSCCSBCC----CCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCcCC-ccCcc--ccccCCEEECCCCCccccC----chHhhcccCcccEEecCCCcccc
Confidence 99998 67766 8999999999999987522 35788999999999999988764
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=198.89 Aligned_cols=219 Identities=22% Similarity=0.217 Sum_probs=175.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+.++..+++| +++++|.+.+..+..|.++++|++|++++|.++...|..|..+++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 79999999999998888889999999 9999999988888889999999999999999988777889999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC----CEEEc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL----SMLDL 212 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L----~~L~l 212 (286)
+|.+++..+..+..+++|++|++++|.+.+. .+|..+.++++|++|++++|.+.+..+..+..+++| +.+++
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCC----CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccCCCccccccccccEEecCCCcccee----cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999855444688999999999999988642 257889999999999999999987766666666666 67777
Q ss_pred ccCCCCcccc----------------------------------------------------------------------
Q 041406 213 SENPLKCSVP---------------------------------------------------------------------- 222 (286)
Q Consensus 213 ~~n~l~~~~~---------------------------------------------------------------------- 222 (286)
++|.+++..+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 7776653322
Q ss_pred -----------hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 223 -----------KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 223 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..++ |+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 23344567777777777776 566666666 7777888777777 5554 4566 888887765
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.9e-24 Score=177.50 Aligned_cols=197 Identities=24% Similarity=0.216 Sum_probs=171.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.+++++++++ .+|..+. +.+ |++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 6889999999988 4666554 345 8999999998888999999999999999999987433 2789999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.++ .+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccC-----HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99998 78888899999999999999997432 4678899999999999999997767778899999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
+++..+..+..+++|++|++++|.++ .+|..+...++|+.+++++|++..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99555556788999999999999998 788888888999999999998873
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4e-24 Score=178.94 Aligned_cols=197 Identities=27% Similarity=0.259 Sum_probs=171.5
Q ss_pred ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406 78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK 155 (286)
Q Consensus 78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (286)
+..++++ ++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++ ++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCC
Confidence 5566677 889999886 4555443 689999999999998778889999999999999999984 4433 7899999
Q ss_pred EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406 156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235 (286)
Q Consensus 156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 235 (286)
+|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 81 ~L~Ls~N~l~------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 81 TLDLSHNQLQ------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp EEECCSSCCS------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCC------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 9999999986 3577888999999999999999977778899999999999999999976666788999999999
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|++++..+..+..+++|++|++++|+++ .+|..+...+ |+.+++++|
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 9999999655556788999999999999999 8898888888 999999987
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=6.7e-25 Score=200.06 Aligned_cols=195 Identities=21% Similarity=0.189 Sum_probs=149.6
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCC--ccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFV--PSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN 162 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 162 (286)
+++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+ ++..+..+++|+.|++++|
T Consensus 330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTS
T ss_pred EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCC
Confidence 34444443333332 56677888888877776543 5567778888888888888773 4444778888888888888
Q ss_pred ccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC-cccchhhhCCCCCCEEEcccccc
Q 041406 163 EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-CSVPKAIGELRKLGILNLGSTQL 241 (286)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 241 (286)
.+.+..+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+
T Consensus 407 ~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 407 NLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp EEESCTT----SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccccccc----hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 8765432 245778888899999988888778888888888999999988887 46778888888999999999988
Q ss_pred cccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 242 NGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++..|..+..+++|++|++++|++++..|..+..++ |+.|++++|
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 877788888888999999999988877667788888 899988876
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=9.9e-24 Score=172.96 Aligned_cols=188 Identities=23% Similarity=0.246 Sum_probs=127.8
Q ss_pred CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc
Q 041406 48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG 125 (286)
Q Consensus 48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (286)
|.|.|.+|.. ..+.+++++++++ .+|..+. +.+ +++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus 5 p~~~gC~C~~-~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 5 ETVTGCTCNE-GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp HHHHSSEEEG-GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCceEcCC-CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 3688888953 4567889998887 4555544 234 77777777776666777777777777777777776666677
Q ss_pred cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCC
Q 041406 126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205 (286)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 205 (286)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..++
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-----SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-----hhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 7777777777777777555556667777777777777765322 23456667777777777777655455566667
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
+|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777777777777655555666667777777777766543
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.8e-23 Score=179.24 Aligned_cols=209 Identities=25% Similarity=0.357 Sum_probs=128.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+.+..+ +..++++ +++++|......+. +..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 78888888888775432 6666666 77777754444333 5666666666666666655322 5556666666666
Q ss_pred CCCCCCCCCc---------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406 137 SNSFTGEIPS---------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 137 ~n~l~~~~~~---------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (286)
+|.+.+ ++. .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++
T Consensus 186 ~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 186 YNQIED-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD------LSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp TSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCcccc-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC------Ccc-hhcCCCCCEEECCCCccCC
Confidence 665552 222 13445555555555555542 122 5566666666666666653
Q ss_pred cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406 196 PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSE 275 (286)
Q Consensus 196 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 275 (286)
. +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 2 345666667777777776663 2 345666777777777777766666666667777777777777774444 666
Q ss_pred cc-cceEEccCC
Q 041406 276 LP-VLIFAAEKN 286 (286)
Q Consensus 276 l~-L~~l~l~~N 286 (286)
++ |++|++++|
T Consensus 332 l~~L~~L~l~~N 343 (347)
T 4fmz_A 332 LSKMDSADFANQ 343 (347)
T ss_dssp CTTCSEESSSCC
T ss_pred hhccceeehhhh
Confidence 66 777777765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-24 Score=181.96 Aligned_cols=210 Identities=20% Similarity=0.141 Sum_probs=178.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++..+++.+.+.......+..++++ |++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 57777888888876655556667778 9999999999888999999999999999999987544 8899999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+++ ++ ..++|++|++++|.+.+.. ...+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~--------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVS--------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEE--------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcC--------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 999873 32 4489999999999997543 2246789999999999997777788889999999999999
Q ss_pred CCcccchhh-hCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAI-GELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|+++ .+|..+..++ |++|++++|
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC
Confidence 997767766 4789999999999999854 33 345899999999999999 5666789999 999999987
No 63
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.7e-23 Score=176.67 Aligned_cols=214 Identities=22% Similarity=0.319 Sum_probs=168.4
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++. +.+..+++| +++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|+++
T Consensus 89 ~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 89 KLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT 163 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECC
T ss_pred cCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEec
Confidence 899999999999863 468889999 9999999976533 8899999999999997665444 48999999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCC----------------CCCccccCCCCCCEEEccCCcccccCChh
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK----------------LLPPEIGELSLLEIFSSPSCSITGPLPEE 200 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 200 (286)
+|.+.+ .+. +..+++|++|++++|.+.+..+.. .+ ..+..+++|++|++++|.+++. +.
T Consensus 164 ~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~-~~- 238 (347)
T 4fmz_A 164 ESKVKD-VTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDL-SP- 238 (347)
T ss_dssp SSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GG-
T ss_pred CCCcCC-chh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCC-cc-
Confidence 999884 433 788999999999999886432100 11 1155667777888887777743 33
Q ss_pred ccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cc
Q 041406 201 LSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VL 279 (286)
Q Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~ 279 (286)
+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..|..+..++ |+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 7777888888888888874 3 457788888888888888874 3 3477888999999999999888888888899 99
Q ss_pred eEEccCC
Q 041406 280 IFAAEKN 286 (286)
Q Consensus 280 ~l~l~~N 286 (286)
+|++++|
T Consensus 315 ~L~L~~n 321 (347)
T 4fmz_A 315 TLFLSQN 321 (347)
T ss_dssp EEECCSS
T ss_pred EEEccCC
Confidence 9999886
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.5e-24 Score=195.55 Aligned_cols=137 Identities=24% Similarity=0.265 Sum_probs=112.1
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC-CccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF-VPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 135 (286)
+++.|++++|.+++..|..+..+++| |++++|.+.+..+..|+++++|++|++++|.+++. .|..+..+++|++|++
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 89999999999998888899999999 99999999988888899999999999999999863 5678899999999999
Q ss_pred CCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCC------------------CCCcc-ccCCCCCCEEEccCCcccc
Q 041406 136 GSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDK------------------LLPPE-IGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 136 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~n~~~~ 195 (286)
++|.+.+.+| ..+..+++|++|++++|.+.+..+.. .+|.. +..+++|++|++++|.+.+
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 9998444554 57889999999999999988654321 00111 1246778888888877764
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5e-23 Score=170.79 Aligned_cols=184 Identities=25% Similarity=0.246 Sum_probs=144.1
Q ss_pred ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406 78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK 155 (286)
Q Consensus 78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (286)
...++.+ +++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4455666 77888877532 3477888888888888888763 3678888888888888888866666678888888
Q ss_pred EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406 156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235 (286)
Q Consensus 156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 235 (286)
+|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 113 ~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLP-----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccC-----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 8888888886432 34577888888888888888866666678888888888888888866666678888888888
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (286)
+++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 88888887666667888888888888888886554
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=183.70 Aligned_cols=221 Identities=21% Similarity=0.176 Sum_probs=165.8
Q ss_pred CEEEEEcCCCCcccccCcc---ccccccc--cccCCCCCccccchhh--cCCCCCCEEEccCCCCCCCCc----cccccC
Q 041406 59 RVIWLVLPTHSLKGPLSPS---LFFLSSL--SDLSQNPLFGQLSRQV--SNLKRLKQLSLGENQLSDFVP----SQLGVL 127 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~---~~~l~~l--L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l 127 (286)
+++.+.+.++.+....... +..++.+ +++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4667777776665321111 2223446 8889999988888877 888999999999999887544 334578
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCCh----hccC
Q 041406 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPE----ELSK 203 (286)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~----~~~~ 203 (286)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+... ...+..+..+++|++|++++|.++ .++. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-LMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 899999999999987777788899999999999998754210 001223457888999999999886 2332 2467
Q ss_pred CCCCCEEEcccCCCCcccchhhhCC---CCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cc
Q 041406 204 LKFLSMLDLSENPLKCSVPKAIGEL---RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VL 279 (286)
Q Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~ 279 (286)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++ +|. +..++ |+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCcc
Confidence 7899999999999987767777665 69999999999998 6777664 789999999999984 343 67778 99
Q ss_pred eEEccCC
Q 041406 280 IFAAEKN 286 (286)
Q Consensus 280 ~l~l~~N 286 (286)
.|++++|
T Consensus 298 ~L~L~~N 304 (310)
T 4glp_A 298 NLTLDGN 304 (310)
T ss_dssp CEECSST
T ss_pred EEECcCC
Confidence 9999887
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.2e-23 Score=171.25 Aligned_cols=191 Identities=18% Similarity=0.168 Sum_probs=157.1
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCC-CCCCCccccccCCCCCEEecCC-CCCCCCCCcccCCCCCCCEEEccCC
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-LSDFVPSQLGVLTQLETLSLGS-NSFTGEIPSELGKLKNLKTLDLSGN 162 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n 162 (286)
+++++|.+.+..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+..+..+++|++|++++|
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 8888898887777788899999999999997 8876666888999999999998 8998666667888999999999999
Q ss_pred ccccccCCCCCCccccCCCCCC---EEEccCC-cccccCChhccCCCCCC-EEEcccCCCCcccchhhhCCCCCCEEEcc
Q 041406 163 EFNGTVRDKLLPPEIGELSLLE---IFSSPSC-SITGPLPEELSKLKFLS-MLDLSENPLKCSVPKAIGELRKLGILNLG 237 (286)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 237 (286)
.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus 116 ~l~~------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 116 GLKM------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CCCS------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred CCcc------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 8864 344 77777787 9999999 88866666788899999 9999999998 565544444889999999
Q ss_pred ccc-ccccCCccCCCC-CCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 238 STQ-LNGSIPAELGKC-ENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 238 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+|+ +++..+..+..+ ++|++|++++|+++ .+|.. .++ |+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 995 886666778888 99999999999998 56654 566 888888764
No 68
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.91 E-value=3.3e-24 Score=194.11 Aligned_cols=206 Identities=26% Similarity=0.344 Sum_probs=171.9
Q ss_pred CCCCCCCCCC-----Cccce-EecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEE
Q 041406 39 VSWNKTNPHC-----YWVGV-SCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLS 110 (286)
Q Consensus 39 ~~w~~~~~~c-----~w~gv-~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~ 110 (286)
.+|..+..+| .|.|+ .|...+++.|++++|++++ +|..+. +++ |++++|.+. .+| ..+++|++|+
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HHHhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 4565555567 69999 7877789999999999987 777664 667 999999997 566 4578999999
Q ss_pred ccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC
Q 041406 111 LGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS 190 (286)
Q Consensus 111 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 190 (286)
+++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~------lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM------LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC------CCC---CCTTCCEEECCS
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc------CCC---cCCCcCEEECCC
Confidence 99999998 666 655 99999999999995 666 68999999999999975 233 578999999999
Q ss_pred CcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCC-------CEEEcccccccccCCccCCCCCCCCEEEcccC
Q 041406 191 CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKL-------GILNLGSTQLNGSIPAELGKCENLMSVMLSCN 263 (286)
Q Consensus 191 n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 263 (286)
|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 99996 676 65 89999999999998 6766 543 67 99999999999 78888888999999999999
Q ss_pred cCccccchhccCcc
Q 041406 264 ALSGSLPEQLSELP 277 (286)
Q Consensus 264 ~l~~~~~~~l~~l~ 277 (286)
++++.+|..+..++
T Consensus 241 ~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 241 PLSSRIRESLSQQT 254 (571)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHhh
Confidence 99999998876653
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=180.61 Aligned_cols=205 Identities=25% Similarity=0.324 Sum_probs=162.3
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+.+. +.+..+++| +++++|.+.+..+ ++.+++|+.|++++|.+++. ..+..+++|++|+++
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 688888888887753 346777777 8888888876655 67788888888888888763 357788889999998
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+++..+ +..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNI------SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCC------GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcc------cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 888874433 77888899999998888642 22 7788889999999998885433 6788889999999998
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++..| +..+++|++|++++|.+++. ..+..+++|++|++++|++++..| +..++ |+.|++++|
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 886554 67888999999999988854 457888999999999999987666 78888 999988875
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=9.9e-24 Score=188.84 Aligned_cols=190 Identities=20% Similarity=0.132 Sum_probs=164.5
Q ss_pred cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCE
Q 041406 79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKT 156 (286)
Q Consensus 79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 156 (286)
...+++ |++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++ ++ ..++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence 344477 9999999999888999999999999999999987554 8999999999999999883 33 3389999
Q ss_pred EEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhh-CCCCCCEEE
Q 041406 157 LDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIG-ELRKLGILN 235 (286)
Q Consensus 157 L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ 235 (286)
|++++|.+.+..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus 104 L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 104 LHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp EECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EECcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 9999999976432 2468899999999999988888899999999999999999988888776 799999999
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
|++|.+++..+ ...+++|++|++++|.+++ +|+.+..++ |+.|++++|
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC
Confidence 99999996532 4468999999999999995 666689999 999999987
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.2e-25 Score=190.38 Aligned_cols=230 Identities=19% Similarity=0.189 Sum_probs=119.3
Q ss_pred CccceEecCCCEEEEEcCCCCcccccCcccccc--ccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCC-Cccc
Q 041406 49 YWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFL--SSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDF-VPSQ 123 (286)
Q Consensus 49 ~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l--~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~ 123 (286)
.|.++.+++..++.++++++.+. +..+..+ +.+ +++++|.+.+..+. +..+++|++|++++|.+... ++..
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH
Confidence 36666555445566666665554 2223333 333 55555555544433 33455666666666555433 4444
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCC-ccccc-CChh
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSC-SITGP-LPEE 200 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~ 200 (286)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++.. ++..+..+++|++|++++| .+++. ++..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 555566666666666555444555555566666666655 343211 2334455556666666666 55532 3444
Q ss_pred ccCCC-CCCEEEcccC--CCC-cccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCc-Cccccchhcc
Q 041406 201 LSKLK-FLSMLDLSEN--PLK-CSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNA-LSGSLPEQLS 274 (286)
Q Consensus 201 ~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 274 (286)
+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 55555 5666666655 333 2344445555666666666665 444444455555666666666652 2222222455
Q ss_pred Ccc-cceEEccCC
Q 041406 275 ELP-VLIFAAEKN 286 (286)
Q Consensus 275 ~l~-L~~l~l~~N 286 (286)
+++ |++|++++|
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 555 666665543
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.7e-22 Score=179.31 Aligned_cols=188 Identities=20% Similarity=0.190 Sum_probs=105.5
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+++++.+++. | .+..++++ +++++|.+.+. + ++.+++|++|++++|.+++. + +..+++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 566666666666653 3 46666666 66666666553 2 56666666666666666653 2 5666666666666
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCC---------------CCccccCCCCCCEEEccCCcccccCChhc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKL---------------LPPEIGELSLLEIFSSPSCSITGPLPEEL 201 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---------------~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 201 (286)
+|.+++ ++ +..+++|++|++++|.+++. +... -...+..+++|++|++++|.+++ +| +
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l 187 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--V 187 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--c
Confidence 666663 33 55666666666666666531 0000 00023444555555555555553 23 4
Q ss_pred cCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 202 SKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|++++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 4555555555555555532 24555666666666666653 33 5555666666666666654
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=8.1e-24 Score=178.81 Aligned_cols=201 Identities=21% Similarity=0.196 Sum_probs=168.4
Q ss_pred CEEEEEcCCCCcccccCccc--cccccc--cccCCCCCccccc----hhhcCCCCCCEEEccCCCCCCCCccccccCCCC
Q 041406 59 RVIWLVLPTHSLKGPLSPSL--FFLSSL--SDLSQNPLFGQLS----RQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQL 130 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~--~~l~~l--L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 130 (286)
+++.|++++|.+.+..|..+ ..+++| |++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 59999999999999999988 888999 9999999987544 445679999999999999999888899999999
Q ss_pred CEEecCCCCCCCC--C--CcccCCCCCCCEEEccCCccccccCCCCCCc-cccCCCCCCEEEccCCcccccCChhccCC-
Q 041406 131 ETLSLGSNSFTGE--I--PSELGKLKNLKTLDLSGNEFNGTVRDKLLPP-EIGELSLLEIFSSPSCSITGPLPEELSKL- 204 (286)
Q Consensus 131 ~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~- 204 (286)
++|++++|++.+. + +..+..+++|++|++++|.++.... .+. .+..+++|++|++++|.+.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG---VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH---HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH---HHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 9999999998642 2 2334678999999999999863210 111 25678999999999999998778777666
Q ss_pred --CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 205 --KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 205 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
++|++|++++|.++ .+|..+. ++|++|++++|++++ +|. +..+++|++|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777664 899999999999995 344 6788999999999999874
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.9e-23 Score=168.93 Aligned_cols=196 Identities=17% Similarity=0.167 Sum_probs=166.5
Q ss_pred CCEEEEEcCCCCcccccCccccccccc--cccCCCC-CccccchhhcCCCCCCEEEccC-CCCCCCCccccccCCCCCEE
Q 041406 58 GRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNP-LFGQLSRQVSNLKRLKQLSLGE-NQLSDFVPSQLGVLTQLETL 133 (286)
Q Consensus 58 ~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L 133 (286)
.+++.|++++|++++..+..+..++++ +++++|. +....+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999998777789999999 9999997 8776667899999999999998 99998777789999999999
Q ss_pred ecCCCCCCCCCCcccCCCCCCC---EEEccCC-ccccccCCCCCCccccCCCCCC-EEEccCCcccccCChhccCCCCCC
Q 041406 134 SLGSNSFTGEIPSELGKLKNLK---TLDLSGN-EFNGTVRDKLLPPEIGELSLLE-IFSSPSCSITGPLPEELSKLKFLS 208 (286)
Q Consensus 134 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~p~~~~~~~~L~ 208 (286)
++++|.+++ +|. +..+++|+ +|++++| .+.+.. +..+..+++|+ +|++++|.++ .+|......++|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-----VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-----TTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-----cccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence 999999984 776 88888888 9999999 886432 35688899999 9999999998 4554433338999
Q ss_pred EEEcccCC-CCcccchhhhCC-CCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406 209 MLDLSENP-LKCSVPKAIGEL-RKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264 (286)
Q Consensus 209 ~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 264 (286)
.|++++|. +++..+..+..+ ++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 99999995 985556778889 99999999999998 55544 67899999998863
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.3e-22 Score=166.27 Aligned_cols=176 Identities=20% Similarity=0.229 Sum_probs=153.6
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++++++.+. .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 19 l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 678888775 4565444 6899999999999998888899999999999999999987777889999999999999999
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 96 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 96 ASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccC-----hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7432 46678899999999999999976666788999999999999999966666789999999999999999977
Q ss_pred CCccCCCCCCCCEEEcccCcCccc
Q 041406 245 IPAELGKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~ 268 (286)
.+..+..+++|++|++++|++.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777889999999999999999865
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.4e-25 Score=191.56 Aligned_cols=227 Identities=19% Similarity=0.226 Sum_probs=161.7
Q ss_pred CEEEEEcCCCCcccccC----ccccccccc--cccCCC---CCccccchhh-------cCCCCCCEEEccCCCCCC----
Q 041406 59 RVIWLVLPTHSLKGPLS----PSLFFLSSL--SDLSQN---PLFGQLSRQV-------SNLKRLKQLSLGENQLSD---- 118 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~----~~~~~l~~l--L~l~~n---~~~~~~~~~l-------~~l~~L~~L~l~~n~l~~---- 118 (286)
+++.|++++|.+.+..+ ..+..+++| |++++| .+.+.+|..+ ..+++|++|++++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 68888888888876533 345567777 788775 4444555444 678888888888888877
Q ss_pred CCccccccCCCCCEEecCCCCCCCCCCcc----cCCC---------CCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406 119 FVPSQLGVLTQLETLSLGSNSFTGEIPSE----LGKL---------KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185 (286)
Q Consensus 119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~ 185 (286)
.++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.++.... ..+...+..+++|++
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-KEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-HHHHHHHHHCTTCCE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-HHHHHHHHhCCCcCE
Confidence 35667778888888888888886332222 3333 788888888888762210 011245667788888
Q ss_pred EEccCCcccc-----cCChhccCCCCCCEEEcccCCCC----cccchhhhCCCCCCEEEccccccccc----CCccC--C
Q 041406 186 FSSPSCSITG-----PLPEELSKLKFLSMLDLSENPLK----CSVPKAIGELRKLGILNLGSTQLNGS----IPAEL--G 250 (286)
Q Consensus 186 L~l~~n~~~~-----~~p~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~--~ 250 (286)
|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++. ++..+ +
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 8888888872 23336777888888888888885 45677778888888888888888754 44555 3
Q ss_pred CCCCCCEEEcccCcCcc----ccchhc-cCcc-cceEEccCC
Q 041406 251 KCENLMSVMLSCNALSG----SLPEQL-SELP-VLIFAAEKN 286 (286)
Q Consensus 251 ~~~~L~~L~l~~n~l~~----~~~~~l-~~l~-L~~l~l~~N 286 (286)
.+++|++|++++|.+++ .+|..+ .+++ |++|++++|
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 47888888888888886 477766 5578 888888876
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.6e-22 Score=169.43 Aligned_cols=188 Identities=22% Similarity=0.324 Sum_probs=161.2
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+++++.+.. ++ .+..+++| |++++|.+.+..+ +..+++|++|++++|.+++. + .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 79999999999885 34 68888888 9999999976544 89999999999999999873 3 68899999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+++ ++. +..+++|++|++++|.+.+. + .+..+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~------~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITNI------S-PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCCC------G-GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCcC------c-cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999984 444 88999999999999998753 2 288899999999999999853 43 8899999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
+++. +. +..+++|++|++++|.+++.. .+..+++|++|++++|++++
T Consensus 185 l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9854 33 789999999999999998544 38889999999999999984
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.3e-22 Score=178.15 Aligned_cols=208 Identities=28% Similarity=0.381 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++..+ +..+++| +++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence 67888888887775433 6777777 7777777765544 6777777777777777766422 6666677777776
Q ss_pred CCCCCCCCCc--------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406 137 SNSFTGEIPS--------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP 196 (286)
Q Consensus 137 ~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 196 (286)
+|.+.+ ++. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.
T Consensus 143 ~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 143 SNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccc
Confidence 666552 221 133445555555555554321 2244444555555555544432
Q ss_pred CC--------------------hhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCC
Q 041406 197 LP--------------------EELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLM 256 (286)
Q Consensus 197 ~p--------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 256 (286)
.| ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+
T Consensus 215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 290 (466)
T 1o6v_A 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT 290 (466)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence 22 123334444444444444442222 44455555555555555432 22 44555556
Q ss_pred EEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 257 SVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 257 ~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+|++++|++.+..+ +..++ |++|++++|
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence 66666665553222 45555 666666554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.8e-22 Score=168.41 Aligned_cols=188 Identities=24% Similarity=0.347 Sum_probs=159.8
Q ss_pred ccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCC
Q 041406 78 LFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLK 155 (286)
Q Consensus 78 ~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 155 (286)
...++++ +++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 4456677 8899998865 44 58899999999999999998544 8999999999999999984 44 688999999
Q ss_pred EEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEE
Q 041406 156 TLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILN 235 (286)
Q Consensus 156 ~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 235 (286)
+|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|+
T Consensus 111 ~L~l~~n~l~~~------~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITDV------T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCCC------G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred EEECCCCCCCCc------h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence 999999998752 3 48899999999999999985433 8889999999999999985 444 88999999999
Q ss_pred cccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 236 LGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 236 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++|.+++. +. +..+++|++|++++|++++.. .+..++ |+.|++++|
T Consensus 180 l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 180 ADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred CCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence 999999854 33 788999999999999999544 388899 999999876
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.4e-24 Score=185.00 Aligned_cols=227 Identities=20% Similarity=0.224 Sum_probs=171.2
Q ss_pred CEEEEEcCCCCcccccC----ccccccc-cc--cccCCCCCccccchhhcCC-----CCCCEEEccCCCCCCCCccccc-
Q 041406 59 RVIWLVLPTHSLKGPLS----PSLFFLS-SL--SDLSQNPLFGQLSRQVSNL-----KRLKQLSLGENQLSDFVPSQLG- 125 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~----~~~~~l~-~l--L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~- 125 (286)
+++.|++++|.+++..+ ..+..++ .+ |++++|.+.+..+..+..+ ++|++|++++|.++...+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 59999999999987666 6677777 78 9999999988777777664 8999999999999876666444
Q ss_pred ---cC-CCCCEEecCCCCCCCCCCcc----cCC-CCCCCEEEccCCccccccCCCCCCccccCCC-CCCEEEccCCcccc
Q 041406 126 ---VL-TQLETLSLGSNSFTGEIPSE----LGK-LKNLKTLDLSGNEFNGTVRDKLLPPEIGELS-LLEIFSSPSCSITG 195 (286)
Q Consensus 126 ---~l-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~ 195 (286)
.+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+... ..++..+..++ +|++|++++|.+++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-DELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-HHHHHHHhcCCccccEeeecCCCCch
Confidence 34 89999999999998655443 334 3689999999999874221 12344556665 89999999999986
Q ss_pred cCChh----ccCC-CCCCEEEcccCCCCcc----cchhhhC-CCCCCEEEcccccccccCC----ccCCCCCCCCEEEcc
Q 041406 196 PLPEE----LSKL-KFLSMLDLSENPLKCS----VPKAIGE-LRKLGILNLGSTQLNGSIP----AELGKCENLMSVMLS 261 (286)
Q Consensus 196 ~~p~~----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~ 261 (286)
..+.. +... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 65543 3444 5899999999999853 4555555 4589999999999886433 345678899999999
Q ss_pred cCcCcc-------ccchhccCcc-cceEEccCC
Q 041406 262 CNALSG-------SLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 262 ~n~l~~-------~~~~~l~~l~-L~~l~l~~N 286 (286)
+|.+.+ .+++.+..++ |+.|++++|
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 998543 2334567778 999999887
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-21 Score=173.54 Aligned_cols=163 Identities=22% Similarity=0.238 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++. | +..+++| |++++|.+.+. + ++.+++|++|++++|.+++. + +..+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECC
Confidence 677777777777653 2 5666666 67777766553 2 56666666666666666652 2 5566666666666
Q ss_pred CCCCCCCCCc--------------------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406 137 SNSFTGEIPS--------------------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP 196 (286)
Q Consensus 137 ~n~l~~~~~~--------------------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 196 (286)
+|.+++. +- .+..+++|+.|++++|.+++ +| +..+++|++|++++|.+++.
T Consensus 136 ~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~------l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 136 RNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE------LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC------CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce------ec--cccCCCCCEEECcCCcCCee
Confidence 6665531 10 23445556666666666543 23 56677788888888887753
Q ss_pred CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccC
Q 041406 197 LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSI 245 (286)
Q Consensus 197 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 245 (286)
.+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++..
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 36677778888888888775 45 667777888888777777543
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=5e-22 Score=158.14 Aligned_cols=179 Identities=22% Similarity=0.268 Sum_probs=80.1
Q ss_pred CCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc
Q 041406 48 CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG 125 (286)
Q Consensus 48 c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (286)
|.|.++.|.... ++ .+|..+. +++ +++++|.+.+..+..|..+++|++|++++|.++...+..|.
T Consensus 7 C~~~~v~c~~~~----------l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (208)
T 2o6s_A 7 CSGTTVECYSQG----------RT-SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73 (208)
T ss_dssp EETTEEECCSSC----------CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred ECCCEEEecCCC----------cc-CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC
Confidence 788888886432 22 1222221 122 44555554444334444555555555555555543333444
Q ss_pred cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCC
Q 041406 126 VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLK 205 (286)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~ 205 (286)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..++
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP-----DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC-----HhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 4555555555555554333333444455555555555443211 12234444444444444444433333344444
Q ss_pred CCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCC
Q 041406 206 FLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGK 251 (286)
Q Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 251 (286)
+|++|++++|.+.+ .+++|+.|+++.|.++|.+|..++.
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 44444444444332 1233444444444444444444433
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.3e-23 Score=179.32 Aligned_cols=202 Identities=23% Similarity=0.247 Sum_probs=153.0
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccc-cchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEec
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQ-LSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSL 135 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 135 (286)
+++.++++++.+.+..+. +..++++ +++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 688888888888876554 5567777 88888887765 7777888888889988888887667777888888888888
Q ss_pred CCC-CCCC-CCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCCC-CCCEEEccCC--ccc-ccCChhccCCCCCC
Q 041406 136 GSN-SFTG-EIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELS-LLEIFSSPSC--SIT-GPLPEELSKLKFLS 208 (286)
Q Consensus 136 ~~n-~l~~-~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n--~~~-~~~p~~~~~~~~L~ 208 (286)
++| .+++ .++..+..+++|++|++++| .+++.. ++..+..++ +|++|++++| .++ +.++..+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 888 5664 25555777888888888888 776421 245677788 8888888888 454 34566677788888
Q ss_pred EEEcccCC-CCcccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCcCc
Q 041406 209 MLDLSENP-LKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 209 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++| ++
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 88888888 666677788888888888888884 43332235677888888888888 44
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=9.4e-22 Score=180.06 Aligned_cols=73 Identities=30% Similarity=0.309 Sum_probs=58.4
Q ss_pred CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEc
Q 041406 205 KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAA 283 (286)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l 283 (286)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|..+..++ |+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 567777777777763 44 45577888888888887 5565 5678999999999999 8898999999 999999
Q ss_pred cCC
Q 041406 284 EKN 286 (286)
Q Consensus 284 ~~N 286 (286)
++|
T Consensus 292 ~~N 294 (622)
T 3g06_A 292 EGN 294 (622)
T ss_dssp CSC
T ss_pred cCC
Confidence 987
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.9e-23 Score=178.38 Aligned_cols=224 Identities=17% Similarity=0.190 Sum_probs=174.9
Q ss_pred EEEcCCCCcccccCccccccccc--cccCCCCCccccc----hhhcCCC-CCCEEEccCCCCCCCCccccccC-----CC
Q 041406 62 WLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS----RQVSNLK-RLKQLSLGENQLSDFVPSQLGVL-----TQ 129 (286)
Q Consensus 62 ~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 129 (286)
..++++++++|.+|..+...+.+ |++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35789999999888877777778 9999999988776 7788898 99999999999998777777765 99
Q ss_pred CCEEecCCCCCCCCCCcc----cCCC-CCCCEEEccCCccccccCCCCCCccccC-CCCCCEEEccCCccccc----CCh
Q 041406 130 LETLSLGSNSFTGEIPSE----LGKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGE-LSLLEIFSSPSCSITGP----LPE 199 (286)
Q Consensus 130 L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~----~p~ 199 (286)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++... ..+...+.. .++|++|++++|.+.+. ++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999998666553 4444 899999999999975331 112223444 36999999999999854 334
Q ss_pred hccCCC-CCCEEEcccCCCCcccchhh----hCC-CCCCEEEccccccccc----CCccCCC-CCCCCEEEcccCcCccc
Q 041406 200 ELSKLK-FLSMLDLSENPLKCSVPKAI----GEL-RKLGILNLGSTQLNGS----IPAELGK-CENLMSVMLSCNALSGS 268 (286)
Q Consensus 200 ~~~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~ 268 (286)
.+...+ +|++|++++|.+++..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 455555 99999999999987666544 455 5999999999999863 4444544 45999999999999865
Q ss_pred cc----hhccCcc-cceEEccCC
Q 041406 269 LP----EQLSELP-VLIFAAEKN 286 (286)
Q Consensus 269 ~~----~~l~~l~-L~~l~l~~N 286 (286)
.+ ..+..++ |++|++++|
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhcCCCccEEEeccC
Confidence 44 3456778 999999875
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.87 E-value=2.8e-23 Score=194.03 Aligned_cols=233 Identities=22% Similarity=0.231 Sum_probs=135.4
Q ss_pred cCCCChhhHHHHHHHHHhccCCCC--CCCCCCCCCC-CCccceEecCCCEEEEEcCCCCcccccCccccccccc------
Q 041406 14 ADDEQNPDEQSLISFKNALESSHN--LVSWNKTNPH-CYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL------ 84 (286)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~w~~~~~~-c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l------ 84 (286)
+......+++++++++.++.+..+ ...|.....+ +.|.+.++...+++.++|.++++... +..+.....|
T Consensus 126 s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 126 SKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEA-NQALLQHKKLSQYSID 204 (727)
T ss_dssp ------CCCHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred hhhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcc-hhhHhhcCccCccccc
Confidence 344556788999999998876655 4567544444 78999999888999999999988763 3333222222
Q ss_pred -cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406 85 -SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163 (286)
Q Consensus 85 -L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 163 (286)
+++..|.+. ..+..+..++.|+.|++++|.+.. +|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 334444443 457788999999999999999985 7777779999999999999999 899999999999999999999
Q ss_pred cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCC-CCCEEEccccccc
Q 041406 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELR-KLGILNLGSTQLN 242 (286)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 242 (286)
++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++.+|..+.... ....+++++|.++
T Consensus 282 l~------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 282 LT------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CS------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CC------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 86 35788999999999999999998 7788899999999999999999988887775432 2234678888888
Q ss_pred ccCCccCCCCCCCCEEEcccC
Q 041406 243 GSIPAELGKCENLMSVMLSCN 263 (286)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~n 263 (286)
+.+|.. |..|+++.|
T Consensus 355 ~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 355 IPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCCCC---------------
T ss_pred CcCccc------cceeEeecc
Confidence 777754 445555555
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=9.4e-22 Score=174.48 Aligned_cols=203 Identities=24% Similarity=0.285 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCC-------------CEEEccCCCCCCCCccc
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRL-------------KQLSLGENQLSDFVPSQ 123 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~~~~~ 123 (286)
+++.++++++.+ |.+|.+++++++| +++++|.+.+.+|..++.+.+| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 688888888888 7888888888888 8888888877777777665543 666666666554 2221
Q ss_pred cccCCCCCEEecCCCCCCCCCCccc----------------CCC-CCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSEL----------------GKL-KNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l----------------~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L 186 (286)
.++|++|++++|.+++ +|..+ ... ++|++|++++|.+++ +| .+..+++|++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~------lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK------LP-ELQNSSFLKII 158 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS------CC-CCTTCTTCCEE
T ss_pred ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC------Cc-ccCCCCCCCEE
Confidence 1344444444444442 22211 011 345555555555432 23 35566666666
Q ss_pred EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
++++|.+++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|... ++|++|++++|.+.
T Consensus 159 ~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 159 DVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp ECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred ECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence 666666653 33322 355666666665553 33 35555555555555555552 22211 24444444444444
Q ss_pred cccchhccCcc-cceEEccCC
Q 041406 267 GSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 267 ~~~~~~l~~l~-L~~l~l~~N 286 (286)
.+|. +..++ |++|++++|
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSS
T ss_pred -cccc-cCCCCCCCEEECCCC
Confidence 3442 44444 555554443
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.1e-21 Score=153.52 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=149.1
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 12 v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 455555554 334333 46899999999999987777789999999999999999965556678999999999999998
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 89 ~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 89 QSLP-----NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CccC-----HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 7432 3557889999999999999997666678899999999999999996666668899999999999997763
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhccCcc
Q 041406 245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP 277 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (286)
.++.|+.|+++.|+++|.+|+.++.++
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 456899999999999999999888776
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2e-23 Score=181.61 Aligned_cols=212 Identities=19% Similarity=0.203 Sum_probs=170.7
Q ss_pred CEEEEEcCCC---CcccccCccc-------cccccc--cccCCCCCcc----ccchhhcCCCCCCEEEccCCCCCCCCcc
Q 041406 59 RVIWLVLPTH---SLKGPLSPSL-------FFLSSL--SDLSQNPLFG----QLSRQVSNLKRLKQLSLGENQLSDFVPS 122 (286)
Q Consensus 59 ~l~~l~l~~~---~l~~~~~~~~-------~~l~~l--L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 122 (286)
+++.|++++| .+.+.+|..+ ..+++| |++++|.+.+ .++..+..+++|++|++++|.++...+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 8999999996 4556666655 677888 9999999988 5788899999999999999998754343
Q ss_pred ccc----cC---------CCCCEEecCCCCCC-CCCC---cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406 123 QLG----VL---------TQLETLSLGSNSFT-GEIP---SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185 (286)
Q Consensus 123 ~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~ 185 (286)
.+. .+ ++|++|++++|+++ ..++ ..+..+++|+.|++++|.+.........+..+..+++|++
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence 333 34 89999999999997 3344 4567889999999999998632100012337788999999
Q ss_pred EEccCCccc----ccCChhccCCCCCCEEEcccCCCCcc----cchhhhC--CCCCCEEEcccccccc----cCCccC-C
Q 041406 186 FSSPSCSIT----GPLPEELSKLKFLSMLDLSENPLKCS----VPKAIGE--LRKLGILNLGSTQLNG----SIPAEL-G 250 (286)
Q Consensus 186 L~l~~n~~~----~~~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~ 250 (286)
|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+.. +++|++|++++|.+++ .+|..+ .
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 999999996 56788889999999999999999865 4566644 8999999999999997 477766 5
Q ss_pred CCCCCCEEEcccCcCccccc
Q 041406 251 KCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~~~ 270 (286)
.+++|++|++++|++++..+
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSH
T ss_pred cCCCceEEEccCCcCCcchh
Confidence 58999999999999997664
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=3.3e-21 Score=177.45 Aligned_cols=175 Identities=25% Similarity=0.213 Sum_probs=91.8
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 55666665555555556666666666666666554445555666666666666665543334455566666666666655
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccc-cCChhccCCCCCCEEEcccCCCCcccchhhhCCCC----CCEEEcccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITG-PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRK----LGILNLGST 239 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~L~~n 239 (286)
++.. +..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+++ ...++++.|
T Consensus 137 ~~l~-----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 137 ASLE-----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp CCST-----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCC-----hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 4321 2345555666666666665543 23455555566666666666665444444443322 224555555
Q ss_pred cccccCCccCCCCCCCCEEEcccCcC
Q 041406 240 QLNGSIPAELGKCENLMSVMLSCNAL 265 (286)
Q Consensus 240 ~l~~~~~~~~~~~~~L~~L~l~~n~l 265 (286)
.+....+. ......+..+++.+|..
T Consensus 212 ~l~~i~~~-~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 212 PMNFIQPG-AFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCCEECTT-TTTTCEEEEEEEESCCS
T ss_pred cccccCcc-cccchhhhhhhhhcccc
Confidence 55532222 22223344555555533
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=4.6e-23 Score=183.26 Aligned_cols=183 Identities=18% Similarity=0.084 Sum_probs=114.0
Q ss_pred CCCCCEEEccCCCCCCC----CccccccCCCCCEEecCCCCCCCCC-----CcccCCCCCCCEEEccCCccccccCCCCC
Q 041406 103 LKRLKQLSLGENQLSDF----VPSQLGVLTQLETLSLGSNSFTGEI-----PSELGKLKNLKTLDLSGNEFNGTVRDKLL 173 (286)
Q Consensus 103 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 173 (286)
.++|++|++++|.++.. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++... ..+
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l 276 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC-GDL 276 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-HHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH-HHH
Confidence 33555555555555442 2334445566666666666554221 1112235666666666666543210 013
Q ss_pred CccccCCCCCCEEEccCCcccccCChhcc-----CCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEccccccccc
Q 041406 174 PPEIGELSLLEIFSSPSCSITGPLPEELS-----KLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 174 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 45566677788888888877644333222 225788888888887754 455666778899999988888765
Q ss_pred CCccCCC-----CCCCCEEEcccCcCcc----ccchhccCcc-cceEEccCC
Q 041406 245 IPAELGK-----CENLMSVMLSCNALSG----SLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 245 ~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~-L~~l~l~~N 286 (286)
.+..+.. .++|++|++++|.+++ .+|..+..++ |++|++++|
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 4433322 6789999999998886 6778888888 999998886
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.4e-20 Score=165.47 Aligned_cols=205 Identities=26% Similarity=0.314 Sum_probs=101.3
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|++++|.+++ +|..+ ..+ +++++|.+.+ +| .++.+++|++|++++|.+++ +|.. .++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 56666666666654 33322 233 5555555544 33 35555555555555555544 2221 1244444444
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCC--------------CCCCccccCCCCCCEEEccCCcccc--cCChh
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD--------------KLLPPEIGELSLLEIFSSPSCSITG--PLPEE 200 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~ 200 (286)
+|.++ .+|. +..+++|++|++++|.+.+.... ..+|.. +++|++|++++|.+++ .+|..
T Consensus 224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~ 298 (454)
T 1jl5_A 224 NNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPN 298 (454)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTT
T ss_pred CCcCC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCc
Confidence 44444 3332 44444444444444444321000 001111 2445555555555553 12211
Q ss_pred c-------------cCC-CCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 201 L-------------SKL-KFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 201 ~-------------~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+ ..+ ++|++|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|+++
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence 1 111 366677777776663 4432 467788888888777 4555 3678888888888888
Q ss_pred c--ccchhccCc-------------c-cceEEccCC
Q 041406 267 G--SLPEQLSEL-------------P-VLIFAAEKN 286 (286)
Q Consensus 267 ~--~~~~~l~~l-------------~-L~~l~l~~N 286 (286)
+ .+|..+..+ + |++|++++|
T Consensus 371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp SCCCCCTTCCEEECCC--------------------
T ss_pred cCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 7 677777776 6 888888776
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=2e-20 Score=156.53 Aligned_cols=183 Identities=26% Similarity=0.299 Sum_probs=135.8
Q ss_pred EcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCC
Q 041406 64 VLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFT 141 (286)
Q Consensus 64 ~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (286)
.+....+.+.. .+..++++ +++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34444444322 23455666 78888877544 3 47788888888888888887443 788888888888888887
Q ss_pred CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCccc
Q 041406 142 GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSV 221 (286)
Q Consensus 142 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 221 (286)
+ ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..
T Consensus 104 ~-~~-~l~~l~~L~~L~L~~n~i~~~-------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 104 D-LS-SLKDLKKLKSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp C-GG-GGTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred C-Ch-hhccCCCCCEEECCCCcCCCC-------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 3 33 478888888888888887641 4577788888888888888754 56778888888888888887543
Q ss_pred chhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 222 PKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 222 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 7788888888888888874 44 37788888888888888874
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=9e-23 Score=181.38 Aligned_cols=227 Identities=20% Similarity=0.141 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCccc----ccCccccccccc--cccCCCCCccccchhhc-----CCCCCCEEEccCCCCCCCC----ccc
Q 041406 59 RVIWLVLPTHSLKG----PLSPSLFFLSSL--SDLSQNPLFGQLSRQVS-----NLKRLKQLSLGENQLSDFV----PSQ 123 (286)
Q Consensus 59 ~l~~l~l~~~~l~~----~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~~~ 123 (286)
+++.|++++|.++. .++..+..+++| |++++|.+.+..+..+. ..++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46677777776663 345566666666 66666666544333222 2345666666666665432 334
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccC-----CCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC-
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSELG-----KLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL- 197 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~- 197 (286)
+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.. ...++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-CRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-HHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-HHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 44556666666666665532222221 2446666666666554310 0012344555666666666666665321
Q ss_pred ----ChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEcccccccccCCccCC-----CCCCCCEEEcccCc
Q 041406 198 ----PEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGSIPAELG-----KCENLMSVMLSCNA 264 (286)
Q Consensus 198 ----p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~ 264 (286)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 11222456666666666666533 344555566666666666665532222111 12355555555555
Q ss_pred Cccc----cchhccCcc-cceEEccCC
Q 041406 265 LSGS----LPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 265 l~~~----~~~~l~~l~-L~~l~l~~N 286 (286)
+++. ++..+..++ |++|++++|
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCC
Confidence 5433 233344444 555555543
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.7e-20 Score=149.56 Aligned_cols=163 Identities=25% Similarity=0.294 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCccceEecCCCEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCC
Q 041406 39 VSWNKTNPHCYWVGVSCQRGRVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQL 116 (286)
Q Consensus 39 ~~w~~~~~~c~w~gv~c~~~~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 116 (286)
..|......|+|.++.|...+++ .+|..+. +.+ |++++|.+.+..+..|..+++|++|++++|.+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hccCCCCCEEeCCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 45555555599999999754322 3444333 445 78888888877777888888888888888888
Q ss_pred CCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc
Q 041406 117 SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP 196 (286)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 196 (286)
+...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT------ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc------ccCcccccCCCCCEEECCCCcCCcc
Confidence 7765566778888888888888888555556777888888888888875 2467777888888888888888755
Q ss_pred CChhccCCCCCCEEEcccCCCCcc
Q 041406 197 LPEELSKLKFLSMLDLSENPLKCS 220 (286)
Q Consensus 197 ~p~~~~~~~~L~~L~l~~n~l~~~ 220 (286)
.+..+..+++|+.|++++|.+.+.
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCCccCC
Confidence 556677788888888888887644
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.2e-20 Score=155.33 Aligned_cols=166 Identities=28% Similarity=0.357 Sum_probs=140.8
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecC
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLG 136 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 136 (286)
+++.|+++++.+... +.+..++++ |++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 789999999998754 347888888 9999999977554 8899999999999999987 33 48899999999999
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCC
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP 216 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~ 216 (286)
+|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-------hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999984 4 4688899999999999998642 578889999999999999986544 8889999999999999
Q ss_pred CCcccchhhhCCCCCCEEEcccccccc
Q 041406 217 LKCSVPKAIGELRKLGILNLGSTQLNG 243 (286)
Q Consensus 217 l~~~~~~~~~~l~~L~~L~L~~n~l~~ 243 (286)
+++ ++ .+..+++|+.|++++|.++.
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 984 44 48899999999999999884
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.2e-20 Score=160.39 Aligned_cols=227 Identities=20% Similarity=0.183 Sum_probs=163.4
Q ss_pred CCccceEecCC-----------CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccc-hhhcCCCCCCE-EEcc
Q 041406 48 CYWVGVSCQRG-----------RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLS-RQVSNLKRLKQ-LSLG 112 (286)
Q Consensus 48 c~w~gv~c~~~-----------~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 112 (286)
|++..|.|... +++.|+|++|.++...+.+|..+++| |++++|.+.+.++ ..|.++++++. +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67777888632 57888899988886555578888888 8888888866655 45778887775 5566
Q ss_pred CCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCC-ccccccCCCCCCccccCC-CCCCEEEccC
Q 041406 113 ENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGEL-SLLEIFSSPS 190 (286)
Q Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l-~~L~~L~l~~ 190 (286)
.|.++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+. .++ +..+..+ ..++.|++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~----~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE----RNSFVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC----TTSSTTSBSSCEEEECCS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc----ccchhhcchhhhhhcccc
Confidence 78888877778888889999999998888554445556667778888654 443 222 2344444 3688899999
Q ss_pred CcccccCChhccCCCCCCEEEccc-CCCCcccc-hhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406 191 CSITGPLPEELSKLKFLSMLDLSE-NPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 191 n~~~~~~p~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 268 (286)
|.++. ++.......+|+.+++++ |.++ .+| ..|+.+++|++|++++|+++ .+|. ..+.+|+.|.+.++.-...
T Consensus 164 N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 164 NGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp SCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCC
T ss_pred ccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCc
Confidence 99984 444444556789999975 5665 555 46788999999999999998 5554 2356777777766543436
Q ss_pred cchhccCcc-cceEEccC
Q 041406 269 LPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 269 ~~~~l~~l~-L~~l~l~~ 285 (286)
+|. +..++ |+.+++++
T Consensus 239 lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCC-TTTCCSCCEEECSC
T ss_pred CCC-chhCcChhhCcCCC
Confidence 774 77888 88888865
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.2e-19 Score=165.91 Aligned_cols=164 Identities=27% Similarity=0.305 Sum_probs=82.4
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+
T Consensus 48 L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 48 IIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp CBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCC
T ss_pred EECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCC
Confidence 44444444322 2 34555555555555555554322 4555555555555555542 22 345555555555555555
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
.+ ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+.|+|++|.+++
T Consensus 122 ~~-------l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 122 SD-------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp CC-------CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CC-------CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 42 12345555555555555555532 344555555555555555553333 4555555555555555553
Q ss_pred CCccCCCCCCCCEEEcccCcCcc
Q 041406 245 IPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
++ .+..+++|+.|++++|++.+
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEEC
T ss_pred Ch-HHccCCCCCEEEccCCcCcC
Confidence 22 34555555555555555543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.3e-19 Score=145.39 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=135.7
Q ss_pred CCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCC-cccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406 106 LKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIP-SELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184 (286)
Q Consensus 106 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~ 184 (286)
-+.+++++|.++. +|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.+++.. +..+..+++|+
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-----EGAFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-----TTTTTTCTTCC
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-----HHHhCCCCCCC
Confidence 3589999999887 565443 457899999999996544 45789999999999999997543 45788999999
Q ss_pred EEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCc
Q 041406 185 IFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNA 264 (286)
Q Consensus 185 ~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 264 (286)
+|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999998777789999999999999999998778889999999999999999998878899999999999999999
Q ss_pred Cccccc
Q 041406 265 LSGSLP 270 (286)
Q Consensus 265 l~~~~~ 270 (286)
+.+..+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 986543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.1e-19 Score=164.70 Aligned_cols=171 Identities=26% Similarity=0.391 Sum_probs=145.1
Q ss_pred cc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEcc
Q 041406 83 SL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLS 160 (286)
Q Consensus 83 ~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 160 (286)
++ +++++|.+.+ +|..+. ++|++|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56 8999999976 676553 789999999999995 66 457999999999999995 777 655 99999999
Q ss_pred CCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc
Q 041406 161 GNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ 240 (286)
Q Consensus 161 ~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 240 (286)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.
T Consensus 129 ~N~l~~------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NNQLTM------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SSCCSC------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred CCcCCC------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 999975 344 67899999999999995 665 57899999999999985 776 65 899999999999
Q ss_pred ccccCCccCCCCCCC-------CEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 241 LNGSIPAELGKCENL-------MSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 241 l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
++ .+|. +.. +| +.|++++|+|+ .+|..+..++ |+.|++++|
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 99 7777 554 77 99999999999 7899888899 999999988
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.8e-19 Score=144.65 Aligned_cols=150 Identities=18% Similarity=0.289 Sum_probs=101.5
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++++++.+. .+|..+. ++++.|++++|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 456666654 3444333 5677777777777765556677777777777777777766667777777777777777777
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
+... +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 93 ~~l~-----~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELP-----KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccC-----HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5321 233566777777777777777666666777777777777777777555555666777777777777665
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=144.77 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=133.2
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCc-cccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 163 (286)
+++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 16 l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 16 VDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 7888888864 566543 457899999999998654 458899999999999999997777789999999999999999
Q ss_pred cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243 (286)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 243 (286)
+++.. +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 93 l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 93 LENVQ-----HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCC-----GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCccC-----HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 97543 5678899999999999999998888999999999999999999998778999999999999999999875
Q ss_pred c
Q 041406 244 S 244 (286)
Q Consensus 244 ~ 244 (286)
.
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 4
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=2.1e-19 Score=144.26 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=134.0
Q ss_pred CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186 (286)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L 186 (286)
+.++.+++.++. +|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+.. |..+..+++|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-----PDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-----TTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-----HHHhhCCcCCCEE
Confidence 678999998887 555443 68999999999999766678999999999999999997543 6789999999999
Q ss_pred EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCc
Q 041406 187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999665566788999999999999999877889999999999999999999777777889999999999999987
Q ss_pred c
Q 041406 267 G 267 (286)
Q Consensus 267 ~ 267 (286)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=7.8e-20 Score=144.19 Aligned_cols=154 Identities=16% Similarity=0.293 Sum_probs=124.8
Q ss_pred cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL 180 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l 180 (286)
..+++|++|++++|.+.. +| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++.. +..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDK-----IPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGG-----SCCCTTC
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCccc-----ChhhcCC
Confidence 567889999999999885 45 5888999999999999765 33 46888999999999999987543 4678888
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCC-CCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEE
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVM 259 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 259 (286)
++|++|++++|.+++..|..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 999999999999987778888889999999999997 65 555 68888999999999999884 44 577889999999
Q ss_pred cccCcCcc
Q 041406 260 LSCNALSG 267 (286)
Q Consensus 260 l~~n~l~~ 267 (286)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99998763
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=156.07 Aligned_cols=175 Identities=24% Similarity=0.208 Sum_probs=125.8
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccc-cCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLG-VLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNE 163 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 163 (286)
++++++.+.. +|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 5677776643 555433 3578888888888876666666 78888888888888886666678888888888888888
Q ss_pred cccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhh---hCCCCCCEEEccccc
Q 041406 164 FNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAI---GELRKLGILNLGSTQ 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~ 240 (286)
+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+ ..+++|+.|+|++|.
T Consensus 100 l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 100 LHTLD-----EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCC-----HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 76432 3457778888888888888887767778888888888888888874333333 467888888888888
Q ss_pred ccccCCccCCCCCC--CCEEEcccCcCcc
Q 041406 241 LNGSIPAELGKCEN--LMSVMLSCNALSG 267 (286)
Q Consensus 241 l~~~~~~~~~~~~~--L~~L~l~~n~l~~ 267 (286)
+++..+..+..++. ++.|++++|++..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 87443345555665 3778888887763
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.2e-19 Score=165.93 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=155.3
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC
Confidence 6677777765544 46788999999999999874 3 58899999999999999985 444 88999999999999998
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
.+ +..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++.
T Consensus 100 ~~-------l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 100 KD-------LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CC-------CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CC-------ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 64 2368899999999999999985 3 4588899999999999999854 6788999999999999999965
Q ss_pred CCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 245 IPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
.| +..+++|++|++++|++++ + +.+..++ |+.|++++|
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSE
T ss_pred hh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCC
Confidence 55 8899999999999999995 4 4688999 999999876
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.2e-19 Score=143.20 Aligned_cols=150 Identities=20% Similarity=0.241 Sum_probs=133.9
Q ss_pred cccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccC
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSK 203 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 203 (286)
...+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 367889999999999998 666 68899999999999997642 357889999999999999999878888999
Q ss_pred CCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc-ccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceE
Q 041406 204 LKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIF 281 (286)
Q Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l 281 (286)
+++|++|++++|.+++..+..++.+++|++|++++|. ++ .++ .+..+++|++|++++|++++ ++ .+..++ |++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 9999999999999998788999999999999999998 65 555 58899999999999999994 54 788899 9999
Q ss_pred EccCC
Q 041406 282 AAEKN 286 (286)
Q Consensus 282 ~l~~N 286 (286)
++++|
T Consensus 187 ~l~~N 191 (197)
T 4ezg_A 187 YAFSQ 191 (197)
T ss_dssp EECBC
T ss_pred EeeCc
Confidence 99987
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=5.7e-19 Score=142.55 Aligned_cols=134 Identities=24% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCC
Q 041406 128 TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFL 207 (286)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L 207 (286)
++|++|++++|.+++..|..+..+++|++|++++|.+.... +..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-----VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-----hhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 44444455544444444444444445555555554443211 1233445555555555555554333444555555
Q ss_pred CEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 208 SMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 115 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 115 KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 55555555555 455555555555555555555554333445555555556665555553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.3e-19 Score=154.65 Aligned_cols=175 Identities=25% Similarity=0.197 Sum_probs=137.1
Q ss_pred EEEcCCCCcccccCccccccccccccCCCCCccccchhhc-CCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC
Q 041406 62 WLVLPTHSLKGPLSPSLFFLSSLSDLSQNPLFGQLSRQVS-NLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF 140 (286)
Q Consensus 62 ~l~l~~~~l~~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 140 (286)
.+++++++++. +|..+......|++++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 22 ~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 45666677663 5665554333389999999887777777 889999999999999887777889999999999999999
Q ss_pred CCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhc---cCCCCCCEEEcccCCC
Q 041406 141 TGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEEL---SKLKFLSMLDLSENPL 217 (286)
Q Consensus 141 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~---~~~~~L~~L~l~~n~l 217 (286)
+...+..|..+++|+.|++++|.+.+.. |..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVD-----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEEC-----HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8666667888999999999999987543 5678889999999999999985433444 5688999999999999
Q ss_pred CcccchhhhCCCC--CCEEEccccccc
Q 041406 218 KCSVPKAIGELRK--LGILNLGSTQLN 242 (286)
Q Consensus 218 ~~~~~~~~~~l~~--L~~L~L~~n~l~ 242 (286)
+...+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 8555567777776 478899888765
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.7e-19 Score=160.80 Aligned_cols=88 Identities=28% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 678899999998884 55 45678999999999998 5665 6789999999999999 88989999999999999
Q ss_pred ccCcCccccchhccCcc
Q 041406 261 SCNALSGSLPEQLSELP 277 (286)
Q Consensus 261 ~~n~l~~~~~~~l~~l~ 277 (286)
++|++++..|..+..++
T Consensus 292 ~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 292 EGNPLSERTLQALREIT 308 (622)
T ss_dssp CSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcc
Confidence 99999988887765443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=7.7e-19 Score=144.74 Aligned_cols=164 Identities=18% Similarity=0.310 Sum_probs=120.6
Q ss_pred cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcc
Q 041406 85 SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEF 164 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 164 (286)
++++.+.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCcc
Confidence 667777775443 46777888888888888776 34 57778888888888888874 444 77888888888888887
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 165 NGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
.+. |. +.. ++|++|++++|.+++ + +.+..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 98 ~~l------~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 98 KNL------NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCC------TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCc------Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 642 22 222 778888888888875 3 347778888888888888874 33 577788888888888888754
Q ss_pred CCccCCCCCCCCEEEcccCcCccc
Q 041406 245 IPAELGKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~n~l~~~ 268 (286)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5577788888888888887743
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.7e-19 Score=152.09 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=160.4
Q ss_pred EEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCc-cccccCCCCCE-EecC
Q 041406 61 IWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVP-SQLGVLTQLET-LSLG 136 (286)
Q Consensus 61 ~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~ 136 (286)
+.++.++++++ .+|..+. +++ |++++|+++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45778888887 5676663 345 8999999986666789999999999999999876555 46888988876 5566
Q ss_pred CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccC-CcccccCChhccCC-CCCCEEEccc
Q 041406 137 SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPS-CSITGPLPEELSKL-KFLSMLDLSE 214 (286)
Q Consensus 137 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~-~~L~~L~l~~ 214 (286)
+|+++...|..|..+++|++|++++|.+.... +..+....++..+++.+ +.+....+..+..+ ..++.|++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-----DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-----CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred CCcccccCchhhhhccccccccccccccccCC-----chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 78998777788999999999999999986432 23445566788888866 45664444556555 3688999999
Q ss_pred CCCCcccchhhhCCCCCCEEEccc-ccccccCC-ccCCCCCCCCEEEcccCcCccccch-hccCcc-cceE
Q 041406 215 NPLKCSVPKAIGELRKLGILNLGS-TQLNGSIP-AELGKCENLMSVMLSCNALSGSLPE-QLSELP-VLIF 281 (286)
Q Consensus 215 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~-L~~l 281 (286)
|.++ .++.......+|+.+++.+ |.++ .+| ..|..+++|++||+++|+++ .+|. .+.+++ |+.+
T Consensus 164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR 231 (350)
T ss_dssp SCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECT
T ss_pred cccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhc
Confidence 9998 5666666677899999975 5666 555 56789999999999999999 5654 455555 4443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-17 Score=137.18 Aligned_cols=165 Identities=27% Similarity=0.301 Sum_probs=126.2
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
++.++++++.+++.. .+..++++ +++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445556666666432 46666777 7888887754 34 57888899999999998887544 88889999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC
Q 041406 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL 217 (286)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l 217 (286)
|++++ ++.. .. ++|+.|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT-------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSBS-------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCCC-------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 98884 4442 33 8899999999988652 3578888999999999998854 3 577888999999999998
Q ss_pred CcccchhhhCCCCCCEEEccccccccc
Q 041406 218 KCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 218 ~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
++. ..+..+++|+.|++++|.+++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 854 6678888999999999988754
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=2.4e-17 Score=129.34 Aligned_cols=130 Identities=22% Similarity=0.331 Sum_probs=94.2
Q ss_pred CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCc-ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCE
Q 041406 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPS-ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEI 185 (286)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~ 185 (286)
+.++++++.++. +|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++.. |..+..+++|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-----PNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCE
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-----HhHcCCcccCCE
Confidence 677888887765 555443 2788888888888754443 3677788888888888776533 566777777888
Q ss_pred EEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccccc
Q 041406 186 FSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGS 244 (286)
Q Consensus 186 L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 244 (286)
|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 88888877766666677777788888888877766677777777777787777777654
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=5.8e-21 Score=173.48 Aligned_cols=193 Identities=21% Similarity=0.264 Sum_probs=148.1
Q ss_pred cccccc--cccCCCCCccccchhhcCCCCCCEEEccCCC-------------CCCCCccccccCCCCCEEe-cCCCCCCC
Q 041406 79 FFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQ-------------LSDFVPSQLGVLTQLETLS-LGSNSFTG 142 (286)
Q Consensus 79 ~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~ 142 (286)
...+++ |++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 345566 788888874 678888888888888886653 4455666777777887777 4544332
Q ss_pred CCCc------ccCC--CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEccc
Q 041406 143 EIPS------ELGK--LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSE 214 (286)
Q Consensus 143 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~ 214 (286)
.++. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~------lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV------LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS------CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC------CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 1110 0111 1358999999999864 455 888999999999999999 7888999999999999999
Q ss_pred CCCCcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEEcccCcCccccch---hccCcc-cceEEc
Q 041406 215 NPLKCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVMLSCNALSGSLPE---QLSELP-VLIFAA 283 (286)
Q Consensus 215 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~l~-L~~l~l 283 (286)
|.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|+.|++++|++++..|. .+..+| |+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99985 66 8899999999999999999765 88899999999999999999865442 234477 888864
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.6e-17 Score=127.52 Aligned_cols=136 Identities=24% Similarity=0.179 Sum_probs=72.6
Q ss_pred CCCCEEEccCCCCC-CCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCC
Q 041406 104 KRLKQLSLGENQLS-DFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSL 182 (286)
Q Consensus 104 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~ 182 (286)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L------------------------- 76 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKL------------------------- 76 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEE-------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEE-------------------------
Confidence 45566666665555 33444455555555555555555422 334444444444
Q ss_pred CCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcc-cchhhhCCCCCCEEEcccccccccCC---ccCCCCCCCCEE
Q 041406 183 LEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLNGSIP---AELGKCENLMSV 258 (286)
Q Consensus 183 L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L 258 (286)
++++|.+.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 77 ----~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 77 ----ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp ----EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred ----ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 4444444443444454555666666666666532 11455566666666666666663332 245566666666
Q ss_pred EcccCcCccccch
Q 041406 259 MLSCNALSGSLPE 271 (286)
Q Consensus 259 ~l~~n~l~~~~~~ 271 (286)
++++|.+. .+|+
T Consensus 153 ~l~~n~~~-~~~~ 164 (168)
T 2ell_A 153 DGYDREDQ-EAPD 164 (168)
T ss_dssp TTEETTSC-BCCS
T ss_pred cCCCCChh-hccc
Confidence 66666655 4443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=7.4e-20 Score=166.19 Aligned_cols=190 Identities=20% Similarity=0.226 Sum_probs=152.9
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCC-------------CccccchhhcCCCCCCEEE-ccCCCCCCCCcc
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNP-------------LFGQLSRQVSNLKRLKQLS-LGENQLSDFVPS 122 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~ 122 (286)
+++.|+|++|.++ .+|..++.++.| |++++|. ..+..|..++.+++|+.|+ ++.|.+.. ++.
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-LRS 427 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-hhh
Confidence 4567888888886 789999999999 8876664 5667788888888898888 55553322 110
Q ss_pred ------cccc--CCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc
Q 041406 123 ------QLGV--LTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT 194 (286)
Q Consensus 123 ------~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 194 (286)
.+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR------ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC------CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc------ccchhhhcCCCCCEEECCCCCCC
Confidence 1111 136999999999999 4776 999999999999999986 35789999999999999999999
Q ss_pred ccCChhccCCCCCCEEEcccCCCCccc-chhhhCCCCCCEEEcccccccccCCcc---CCCCCCCCEEEc
Q 041406 195 GPLPEELSKLKFLSMLDLSENPLKCSV-PKAIGELRKLGILNLGSTQLNGSIPAE---LGKCENLMSVML 260 (286)
Q Consensus 195 ~~~p~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l 260 (286)
+ +| .+..+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|.. +..+++|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6 67 7999999999999999999766 899999999999999999999654422 233789999874
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=5.4e-17 Score=124.47 Aligned_cols=131 Identities=24% Similarity=0.266 Sum_probs=98.5
Q ss_pred ccc--cccCCCCCc-cccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEE
Q 041406 82 SSL--SDLSQNPLF-GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLD 158 (286)
Q Consensus 82 ~~l--L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 158 (286)
+.+ +++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 455 899999997 67888889999999999999999885 7788999999999999999976777777788888888
Q ss_pred ccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCC---hhccCCCCCCEEEcccCCCC
Q 041406 159 LSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLP---EELSKLKFLSMLDLSENPLK 218 (286)
Q Consensus 159 l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~~~~L~~L~l~~n~l~ 218 (286)
+++|.+++.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~----~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDIS----TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSG----GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcch----hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888876421 01455666666666666666664333 24555566666666665554
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.1e-16 Score=125.47 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=118.0
Q ss_pred CEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEE
Q 041406 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210 (286)
Q Consensus 131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L 210 (286)
++++++++.++ .+|..+.. ++++|++++|.+.+..+ ...+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 78999999997 78876544 89999999999975431 1248899999999999999998889999999999999
Q ss_pred EcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccc
Q 041406 211 DLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLP 270 (286)
Q Consensus 211 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 270 (286)
++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999999998777789999999999999999999889999999999999999999997654
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=4.2e-17 Score=122.53 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=14.9
Q ss_pred CCCEEEccCCCCC-CCCccccccCCCCCEEecCCCCCC
Q 041406 105 RLKQLSLGENQLS-DFVPSQLGVLTQLETLSLGSNSFT 141 (286)
Q Consensus 105 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 141 (286)
+|+.|++++|.++ +.+|..+..+++|++|++++|.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 55 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT 55 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC
Confidence 3444444444443 223333333444444444444333
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=6.1e-17 Score=121.67 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCCCEEecCCCCCC-CCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCC
Q 041406 128 TQLETLSLGSNSFT-GEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKF 206 (286)
Q Consensus 128 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~ 206 (286)
++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45666666666665 45555555566666666666555421 23444444445555444444334444444444
Q ss_pred CCEEEcccCCCCcc-cchhhhCCCCCCEEEccccccc
Q 041406 207 LSMLDLSENPLKCS-VPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 207 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
|++|++++|.+++. .+..+..+++|++|++++|.++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44444444444421 1233444444444444444444
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.2e-16 Score=121.75 Aligned_cols=127 Identities=24% Similarity=0.336 Sum_probs=88.8
Q ss_pred CEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEE
Q 041406 107 KQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIF 186 (286)
Q Consensus 107 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L 186 (286)
+.++++++.++. +|..+. +++++|++++|.++ .+|..+..+++|+.|++++|.+++.. +..|..+++|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC-----HhHccCCCCCCEE
Confidence 567777777775 444332 57778888888777 66677777777888888777776432 3556777777777
Q ss_pred EccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 187 SSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 187 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
++++|.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777777666666777777777777777777444445667777777777777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.4e-17 Score=155.65 Aligned_cols=148 Identities=23% Similarity=0.232 Sum_probs=106.1
Q ss_pred CccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCCh
Q 041406 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPE 199 (286)
Q Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 199 (286)
.+..+..+..|+.|+|++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++ .+|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT------ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS------CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc------ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 4566777888888888888887 67777778888888888888875 24677888888888888888888 6777
Q ss_pred hccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC-CCEEEcccCcCccccchhccCc
Q 041406 200 ELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN-LMSVMLSCNALSGSLPEQLSEL 276 (286)
Q Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l 276 (286)
.+..+++|++|++++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|..+..+
T Consensus 288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 7888888888888888886 67777888888888888888888777765543321 2246788888887777655443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=9.4e-16 Score=118.55 Aligned_cols=91 Identities=24% Similarity=0.245 Sum_probs=44.4
Q ss_pred cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 041406 178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMS 257 (286)
Q Consensus 178 ~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 257 (286)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 34444444444444444333333445555555555555555333334445555555555555555333333445555555
Q ss_pred EEcccCcCccc
Q 041406 258 VMLSCNALSGS 268 (286)
Q Consensus 258 L~l~~n~l~~~ 268 (286)
|++++|++.+.
T Consensus 129 L~l~~N~~~~~ 139 (177)
T 2o6r_A 129 IWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCBCCC
T ss_pred EEecCCCeecc
Confidence 55555555543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=119.61 Aligned_cols=129 Identities=21% Similarity=0.356 Sum_probs=114.1
Q ss_pred CCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCE
Q 041406 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM 209 (286)
Q Consensus 130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~ 209 (286)
-++++++++.++ .+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 368999999998 7777553 68999999999986 35788999999999999999999877788999999999
Q ss_pred EEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 210 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
|++++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|++++|++..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999997777789999999999999999996555678899999999999999874
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=6.5e-17 Score=147.97 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=19.2
Q ss_pred CccccCCCCCCEEEccCCcccccCC-hhccCCCCCCEEEcc
Q 041406 174 PPEIGELSLLEIFSSPSCSITGPLP-EELSKLKFLSMLDLS 213 (286)
Q Consensus 174 ~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~~~~L~~L~l~ 213 (286)
|..+..+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 4444555566666666655443221 223444445554444
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=8.5e-16 Score=118.74 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=66.7
Q ss_pred hcCCCCCCEEEccCCCCCCCCccccccC-CCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCcccc
Q 041406 100 VSNLKRLKQLSLGENQLSDFVPSQLGVL-TQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIG 178 (286)
Q Consensus 100 l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 178 (286)
+..+++|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l-------------- 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI-------------- 76 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCC--------------
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcc--------------
Confidence 3445566666666666654 233 3333 3666666666665532 3444555555555555554
Q ss_pred CCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccch--hhhCCCCCCEEEcccccccccCCcc----CCCC
Q 041406 179 ELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPK--AIGELRKLGILNLGSTQLNGSIPAE----LGKC 252 (286)
Q Consensus 179 ~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~ 252 (286)
++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+
T Consensus 77 ---------------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l 139 (176)
T 1a9n_A 77 ---------------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV 139 (176)
T ss_dssp ---------------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred ---------------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence 4322222344455555555555553 3333 4445555555555555554 33332 4455
Q ss_pred CCCCEEEcccCcCc
Q 041406 253 ENLMSVMLSCNALS 266 (286)
Q Consensus 253 ~~L~~L~l~~n~l~ 266 (286)
++|+.||+++|...
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 55555555555543
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=5.6e-15 Score=114.15 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=99.9
Q ss_pred CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCE
Q 041406 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI 233 (286)
Q Consensus 154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 233 (286)
.+.++++++.++. +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 9 ~~~l~~~~~~l~~------~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTS------VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSS------CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCcc------CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 3556666665542 23222 257788888888887666667889999999999999999666667889999999
Q ss_pred EEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 234 LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 234 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
|++++|.+++..+..+..+++|++|++++|++++..+..+..++ |++|++++|
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 99999999976666788999999999999999955555678899 999999987
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.8e-15 Score=116.93 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=96.9
Q ss_pred CCCCCCCEEEccCCccccccCCCCCCccccCC-CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhC
Q 041406 149 GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL-SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGE 227 (286)
Q Consensus 149 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (286)
..+.+|+.|++++|.+.. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 16 ~~~~~L~~L~l~~n~l~~------i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV------IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp ECTTSCEEEECTTSCCCS------CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred CCcCCceEEEeeCCCCch------hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence 345556666666665542 122 2333 3777777777777754 56788999999999999999544455689
Q ss_pred CCCCCEEEcccccccccCCc--cCCCCCCCCEEEcccCcCccccch----hccCcc-cceEEccCC
Q 041406 228 LRKLGILNLGSTQLNGSIPA--ELGKCENLMSVMLSCNALSGSLPE----QLSELP-VLIFAAEKN 286 (286)
Q Consensus 228 l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~-L~~l~l~~N 286 (286)
+++|++|++++|.++ .+|. .+..+++|++|++++|+++ .+|. .+..+| |+.|++++|
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 999999999999997 5665 7889999999999999998 6666 488999 999999876
No 130
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=2.6e-16 Score=143.94 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=64.9
Q ss_pred CEEEEEcCCCCcccc----cCccccccccc--cccCCCCCc----cccchhhcCCCCCCEEEccCCCCCCCCccccccCC
Q 041406 59 RVIWLVLPTHSLKGP----LSPSLFFLSSL--SDLSQNPLF----GQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLT 128 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~----~~~~~~~l~~l--L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 128 (286)
+++.|++++|.+.+. ++.....++.| |++++|.+. +.++..+..+++|+.|++++|.+.+ ++..+..++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~ 243 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA 243 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence 677777777766544 22233445555 666666665 2344445566667777776665544 333344444
Q ss_pred CCCEEecC---------------------------CCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCC
Q 041406 129 QLETLSLG---------------------------SNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELS 181 (286)
Q Consensus 129 ~L~~L~l~---------------------------~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 181 (286)
+|++|+++ ++.. ..+|..+..+++|++|++++|.+++.. ++..+..++
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~----~~~~~~~~~ 318 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED----HCTLIQKCP 318 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH----HHHHHTTCT
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH----HHHHHHhCc
Confidence 44444443 2211 133444455566777777766654322 112234455
Q ss_pred CCCEEEcc
Q 041406 182 LLEIFSSP 189 (286)
Q Consensus 182 ~L~~L~l~ 189 (286)
+|++|+++
T Consensus 319 ~L~~L~L~ 326 (592)
T 3ogk_B 319 NLEVLETR 326 (592)
T ss_dssp TCCEEEEE
T ss_pred CCCEEecc
Confidence 55555554
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=7.9e-18 Score=132.77 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=92.2
Q ss_pred CCCCCCEEEccCCCCCCCCcc------ccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCc
Q 041406 102 NLKRLKQLSLGENQLSDFVPS------QLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPP 175 (286)
Q Consensus 102 ~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 175 (286)
....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+.. +|.
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~------l~~ 87 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK------IEN 87 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS------CSS
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc------ccc
Confidence 334444444444444443333 56666666666666666663 44 55666666666666666641 345
Q ss_pred cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccc-hhhhCCCCCCEEEcccccccccCCcc------
Q 041406 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVP-KAIGELRKLGILNLGSTQLNGSIPAE------ 248 (286)
Q Consensus 176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------ 248 (286)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 55555667777777776664 33 45666677777777777763221 35667777777777777776554432
Q ss_pred ----CCCCCCCCEEEcccCcCc
Q 041406 249 ----LGKCENLMSVMLSCNALS 266 (286)
Q Consensus 249 ----~~~~~~L~~L~l~~n~l~ 266 (286)
+..+++|+.|| +|.++
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHhCCCcEEEC--CcccC
Confidence 55677777776 55554
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=5.3e-15 Score=125.71 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=151.7
Q ss_pred CEEEEEcCCCCcc--cccCccccccccccccCCCCCccccchhhcC--------CCCCCEEEccCCCCCCCCccccccCC
Q 041406 59 RVIWLVLPTHSLK--GPLSPSLFFLSSLSDLSQNPLFGQLSRQVSN--------LKRLKQLSLGENQLSDFVPSQLGVLT 128 (286)
Q Consensus 59 ~l~~l~l~~~~l~--~~~~~~~~~l~~lL~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~ 128 (286)
+++.|+|++|.+. ......+.. ..+..+..+.+ -..+|.+ +++|+.+++.. .++...+..|.+++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred cCeEEecCcceeEEecCccccccc-ccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence 6888888888776 222222222 11122222321 2244555 89999999988 77776677888999
Q ss_pred CCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCcccc---ccCCC------------------CCCc------------
Q 041406 129 QLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNG---TVRDK------------------LLPP------------ 175 (286)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~------------------~~~~------------ 175 (286)
+|+.+++.+|.+....+..|..+.++..+....+.... .+... .++.
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 99999999988875555667776666666654421100 00000 0000
Q ss_pred ---------------cc-cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC-EEEccc
Q 041406 176 ---------------EI-GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG-ILNLGS 238 (286)
Q Consensus 176 ---------------~~-~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~ 238 (286)
.+ ..+++|+.+++++|+++...+..|..+.+|+.+++.+| ++...+..|..+++|+ .+.+.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 00 12689999999999998666678999999999999998 7655567889999999 999988
Q ss_pred ccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEc
Q 041406 239 TQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAA 283 (286)
Q Consensus 239 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l 283 (286)
.++...+..|.++++|+.+++++|.++..-+.+|.+++ |+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 67656678899999999999999999955556899998 998864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.5e-17 Score=131.17 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=123.1
Q ss_pred cccCCCCCEEecCCCCCCCCCCc------ccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccC
Q 041406 124 LGVLTQLETLSLGSNSFTGEIPS------ELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL 197 (286)
Q Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (286)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~------l~-~~~~l~~L~~L~l~~n~l~-~l 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK------IS-SLSGMENLRILSLGRNLIK-KI 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC------CC-CHHHHTTCCEEEEEEEEEC-SC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc------cc-ccccCCCCCEEECCCCCcc-cc
Confidence 44556667777777777766665 88899999999999999864 45 7888999999999999998 67
Q ss_pred ChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCC-ccCCCCCCCCEEEcccCcCccccch-----
Q 041406 198 PEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIP-AELGKCENLMSVMLSCNALSGSLPE----- 271 (286)
Q Consensus 198 p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----- 271 (286)
|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|.
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 8777777899999999999985 55 68889999999999999984322 4688899999999999999876554
Q ss_pred -----hccCcc-cceEE
Q 041406 272 -----QLSELP-VLIFA 282 (286)
Q Consensus 272 -----~l~~l~-L~~l~ 282 (286)
.+..++ |++|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 377888 88886
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=2.5e-16 Score=144.08 Aligned_cols=207 Identities=15% Similarity=0.039 Sum_probs=101.0
Q ss_pred CEEEEEcCCCCcccccCc-cccccccc--cccCCCCCccc-cchhhcCCCCCCEEEccC---------CCCCCCCcccc-
Q 041406 59 RVIWLVLPTHSLKGPLSP-SLFFLSSL--SDLSQNPLFGQ-LSRQVSNLKRLKQLSLGE---------NQLSDFVPSQL- 124 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~-~~~~l~~l--L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~~~~~- 124 (286)
+++.|++++|.+++.... .+..+++| |++++| +.+. ++.....+++|+.|++.. +.++......+
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 566666666665433222 23344555 555555 3222 122223456666666632 22222111122
Q ss_pred ccCCCCCEEecCCCCCCCCCCcccC-CCCCCCEEEcc--C----CccccccCCCCCCccccCCCCCCEEEccCCcccccC
Q 041406 125 GVLTQLETLSLGSNSFTGEIPSELG-KLKNLKTLDLS--G----NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPL 197 (286)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 197 (286)
..+++|++|.++.+.+++.....+. .+++|+.|+++ + +.+++......++..+..+++|++|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 2356666666665555533333332 35666666666 2 22321100001122244556666666655 444433
Q ss_pred ChhccC-CCCCCEEEcccCCCCcccchhh-hCCCCCCEEEcccccccccCCc-cCCCCCCCCEEEcccCcCcc
Q 041406 198 PEELSK-LKFLSMLDLSENPLKCSVPKAI-GELRKLGILNLGSTQLNGSIPA-ELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 198 p~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~ 267 (286)
+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 333333 5667777777666654444433 4566677777777666543222 23345667777777766643
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.8e-13 Score=104.92 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=57.8
Q ss_pred CCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCE
Q 041406 130 LETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSM 209 (286)
Q Consensus 130 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~ 209 (286)
.+.+++++|.++ .+|..+. +++++|++++|.+++.. |..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 456677777666 4555432 55666666666665322 344555555666666665555444444455555555
Q ss_pred EEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 210 LDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 210 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
|++++|.+++..+..+..+++|++|++++|.++
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555555555333334555555555555555554
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=1.2e-15 Score=139.48 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=111.8
Q ss_pred ccccc--cccCCCCCccccchhhc-CCCCCCEEEccCC-CCCCC-CccccccCCCCCEEecCCCCCCCCCCccc----CC
Q 041406 80 FLSSL--SDLSQNPLFGQLSRQVS-NLKRLKQLSLGEN-QLSDF-VPSQLGVLTQLETLSLGSNSFTGEIPSEL----GK 150 (286)
Q Consensus 80 ~l~~l--L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~ 150 (286)
.+++| |++++|.+.+..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 34455 67777777666555554 5677777777776 33321 22333467777777777777654333322 24
Q ss_pred CCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCC-------------
Q 041406 151 LKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPL------------- 217 (286)
Q Consensus 151 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l------------- 217 (286)
+++|++|++++|. +.+....++..+..+++|++|++++|...+.++..+..+++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 5677777777665 1111011222234457777777777633223555555666666666543321
Q ss_pred -----------------CcccchhhhCCCCCCEEEcccccccccC-CccCCCCCCCCEEEcccCcCccc-cchhccCcc-
Q 041406 218 -----------------KCSVPKAIGELRKLGILNLGSTQLNGSI-PAELGKCENLMSVMLSCNALSGS-LPEQLSELP- 277 (286)
Q Consensus 218 -----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~- 277 (286)
.+.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 1123333345677777777777765432 222456777888888777 3322 222333466
Q ss_pred cceEEc
Q 041406 278 VLIFAA 283 (286)
Q Consensus 278 L~~l~l 283 (286)
|++|++
T Consensus 340 L~~L~L 345 (594)
T 2p1m_B 340 LRELRV 345 (594)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777776
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.8e-13 Score=105.34 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred CEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEE
Q 041406 131 ETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSML 210 (286)
Q Consensus 131 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L 210 (286)
+.++++++.++ .+|..+. ++|+.|++++|.+.+.. |..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 56777777775 5665443 66777777777765432 4556666666666666666664444445566666666
Q ss_pred EcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 211 DLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 211 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666666433334566666666666666655
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.6e-13 Score=105.30 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=93.8
Q ss_pred CCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC
Q 041406 153 NLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG 232 (286)
Q Consensus 153 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 232 (286)
..+.+++++|.++. +|..+ .+++++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 10 ~~~~l~~s~n~l~~------ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLAS------VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSS------CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCc------cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 46789999999863 45544 37899999999999988888899999999999999999966666788999999
Q ss_pred EEEcccccccccCCccCCCCCCCCEEEcccCcCccc
Q 041406 233 ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGS 268 (286)
Q Consensus 233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 268 (286)
+|+|++|.+++..+..+..+++|++|++++|++...
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999966666799999999999999999854
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3e-13 Score=104.17 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=91.3
Q ss_pred CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCE
Q 041406 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGI 233 (286)
Q Consensus 154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 233 (286)
-+.+++++|.+.. +|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 14 ~~~l~~~~n~l~~------iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLAS------VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSS------CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCc------cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 4789999998852 455543 78999999999999888889999999999999999999655556789999999
Q ss_pred EEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 234 LNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 234 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
|+|++|.+++..+..+..+++|++|++++|++..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999996555568999999999999999984
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=4.4e-15 Score=128.13 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=76.7
Q ss_pred cccCCCCCccccchhhcC-----CCCCCEEEccCCCCCCCCcccc-ccCCCCCEEecCCCCCCCCCCccc-----CCCCC
Q 041406 85 SDLSQNPLFGQLSRQVSN-----LKRLKQLSLGENQLSDFVPSQL-GVLTQLETLSLGSNSFTGEIPSEL-----GKLKN 153 (286)
Q Consensus 85 L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~ 153 (286)
+++++|.++......+.. .++|+.|++++|.++......+ ..+++|++|++++|.++......+ ...++
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~ 156 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCC
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCc
Confidence 566666655443333222 1456666666666543222222 223456666666666553222222 23455
Q ss_pred CCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhh
Q 041406 154 LKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAI 225 (286)
Q Consensus 154 L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~ 225 (286)
|++|++++|.++... ...++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.+++. ++..+
T Consensus 157 L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 157 ITTLRLSNNPLTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCEEECCSSCCHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 666666666654211 011233344555666666666665532 233444455566666666666532 22233
Q ss_pred hCCCCCCEEEcccccccc
Q 041406 226 GELRKLGILNLGSTQLNG 243 (286)
Q Consensus 226 ~~l~~L~~L~L~~n~l~~ 243 (286)
...++|++|+|++|.+++
T Consensus 236 ~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 236 REHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHCSSCCEEECTTSSCCH
T ss_pred HhCCCCCEEeccCCCCCH
Confidence 344556666666665554
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1e-11 Score=108.07 Aligned_cols=212 Identities=13% Similarity=0.159 Sum_probs=128.3
Q ss_pred EEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 60 VIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 60 l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
++.+.+.. .+...-..+|..+.+| +++..|.+...-..+|. +.+|+.+.+.. .+.......|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 44444443 3332333345555555 55555555443333443 35555555542 24443444556666666666654
Q ss_pred CCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccc-----ccCChhccCCCCCCEEEc
Q 041406 138 NSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSIT-----GPLPEELSKLKFLSMLDL 212 (286)
Q Consensus 138 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~p~~~~~~~~L~~L~l 212 (286)
+ ++..-...|.. .+|+.+.+.++ ++. + -..+|.++++|+.+++.++.+. ...+..|..+++|+.+++
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp~~-i~~-I----~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLPNG-VTN-I----ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEETT-CCE-E----CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred C-ccCcccccccc-CCccEEEeCCC-ccE-E----ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 3 33222233444 56666666332 321 1 1466778888999988877654 344567888888999998
Q ss_pred ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc--cceEEccC
Q 041406 213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP--VLIFAAEK 285 (286)
Q Consensus 213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--L~~l~l~~ 285 (286)
.+ .++......|..+++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|..++ +..+.+..
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 84 466445567888899999999655 554556778888 999999999988755556777776 77776643
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=2.5e-14 Score=123.39 Aligned_cols=172 Identities=18% Similarity=0.168 Sum_probs=125.3
Q ss_pred CCCCCEEEccCCCCCCCCcccccc-----CCCCCEEecCCCCCCCCCCccc-CCCCCCCEEEccCCccccccCCCCCCcc
Q 041406 103 LKRLKQLSLGENQLSDFVPSQLGV-----LTQLETLSLGSNSFTGEIPSEL-GKLKNLKTLDLSGNEFNGTVRDKLLPPE 176 (286)
Q Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 176 (286)
++.|+.|++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|++++|.++.... ..+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHH
Confidence 367999999999988644444433 2699999999999874322222 235689999999999864321 011222
Q ss_pred c-cCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc----cchhhhCCCCCCEEEccccccccc---
Q 041406 177 I-GELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS----VPKAIGELRKLGILNLGSTQLNGS--- 244 (286)
Q Consensus 177 ~-~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 244 (286)
+ ...++|++|++++|.++.. ++..+...++|++|++++|.+++. ++..+...++|++|+|++|.+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3 2467899999999999742 445567888999999999999753 345667788999999999999853
Q ss_pred -CCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406 245 -IPAELGKCENLMSVMLSCNALSGSLPEQLSE 275 (286)
Q Consensus 245 -~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 275 (286)
++..+...++|++|++++|.+++.....+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3344556789999999999998655554443
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=6.1e-12 Score=106.73 Aligned_cols=172 Identities=14% Similarity=0.096 Sum_probs=131.0
Q ss_pred cccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCC----CC------------
Q 041406 81 LSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSF----TG------------ 142 (286)
Q Consensus 81 l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~------------ 142 (286)
++.| +++.. .+...-+.+|.+|++|+.++++.|.+....+..|..+.++..+....... ..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 7777 77777 77666667888899999999988888776666777776666666544110 00
Q ss_pred ----------CCCc----------c-----------------c-CCCCCCCEEEccCCccccccCCCCCCccccCCCCCC
Q 041406 143 ----------EIPS----------E-----------------L-GKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLE 184 (286)
Q Consensus 143 ----------~~~~----------~-----------------l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~ 184 (286)
.++. . + ..+++|+.+++.+|.++... +..|.++.+|+
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~ 253 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-----DFTFAQKKYLL 253 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-----TTTTTTCTTCC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-----HhhhhCCCCCC
Confidence 0000 0 0 02689999999999886432 46788999999
Q ss_pred EEEccCCcccccCChhccCCCCCC-EEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 185 IFSSPSCSITGPLPEELSKLKFLS-MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 185 ~L~l~~n~~~~~~p~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
++++..| +....+..|..+.+|+ .+++.+ .++...+..|..+++|+.+++.+|.++...+..|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999998 7756677899999999 999988 676555688999999999999999999777778999999999864
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=6.4e-11 Score=103.06 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=111.9
Q ss_pred CccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCC
Q 041406 92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDK 171 (286)
Q Consensus 92 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 171 (286)
+...-..+|.+|++|+.+++..|.++......|. ..+|+.+.+..+ ++......|..+++|+.+++..+ ++ .++
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~-- 241 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIG-- 241 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EEC--
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccc--
Confidence 3333345566666666666666666554444444 466666666533 44333445666677777777654 22 111
Q ss_pred CCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC-----cccchhhhCCCCCCEEEcccccccccCC
Q 041406 172 LLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK-----CSVPKAIGELRKLGILNLGSTQLNGSIP 246 (286)
Q Consensus 172 ~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 246 (286)
..+|.+ .+|+.+.+. +.+.......|..+++|+.+++.++.+. ......|..+++|+.+.+.+ .++....
T Consensus 242 --~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~ 316 (401)
T 4fdw_A 242 --QEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ 316 (401)
T ss_dssp --TTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred --cccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh
Confidence 233444 567777773 3455444567788888888888777654 23345677888888888874 3554555
Q ss_pred ccCCCCCCCCEEEcccCcCccccchhccCcccceEEccCC
Q 041406 247 AELGKCENLMSVMLSCNALSGSLPEQLSELPVLIFAAEKN 286 (286)
Q Consensus 247 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~L~~l~l~~N 286 (286)
..|.++++|+.+++..+ ++..-..+|..+.|+.+++.+|
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCS
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCC
Confidence 67788888888888554 5533344666666777777654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=9.6e-12 Score=106.22 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=90.0
Q ss_pred CEEEccCC-ccccccCCCCCCccccCCCCCCEEEccC-CcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCC
Q 041406 155 KTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPS-CSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLG 232 (286)
Q Consensus 155 ~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 232 (286)
..++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|+
T Consensus 11 ~~v~~~~~n~l~~------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS------LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT------TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCCc------cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 35688877 7753 577 88999999999996 999977778899999999999999999988888999999999
Q ss_pred EEEcccccccccCCccCCCCCCCCEEEcccCcCcc
Q 041406 233 ILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSG 267 (286)
Q Consensus 233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 267 (286)
+|+|++|++++..+..+..++ |+.|++++|.+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999965555555555 9999999999984
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.7e-11 Score=104.66 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=90.1
Q ss_pred CEEecCCC-CCCCCCCcccCCCCCCCEEEccC-CccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCC
Q 041406 131 ETLSLGSN-SFTGEIPSELGKLKNLKTLDLSG-NEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLS 208 (286)
Q Consensus 131 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~ 208 (286)
..++.+++ .++ .+|. +..+.+|+.|++++ |.+.+.. +..|..+++|++|+|++|.+++..|..|..+++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 35688888 888 6888 99999999999996 9987543 46799999999999999999988888999999999
Q ss_pred EEEcccCCCCcccchhhhCCCCCCEEEcccccccc
Q 041406 209 MLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNG 243 (286)
Q Consensus 209 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 243 (286)
+|+|++|.+++..+..+..++ |+.|+|.+|.+..
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999955555555555 9999999999874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=2.6e-11 Score=103.86 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCCCCEEEcccCCCCcccchhhh---CCCCCCEEEccccccccc----CCccCCCCCCCCEEEcccCcCc
Q 041406 204 LKFLSMLDLSENPLKCSVPKAIG---ELRKLGILNLGSTQLNGS----IPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34555555555544432222222 244555555555554432 1111223445555555555544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=7.7e-11 Score=100.94 Aligned_cols=201 Identities=14% Similarity=0.145 Sum_probs=127.3
Q ss_pred CEEEEEcCCCCccc-c-------cCccccccccc--cccCCCC-----C----ccccchhhcCCCCCCEEEccCCCCCCC
Q 041406 59 RVIWLVLPTHSLKG-P-------LSPSLFFLSSL--SDLSQNP-----L----FGQLSRQVSNLKRLKQLSLGENQLSDF 119 (286)
Q Consensus 59 ~l~~l~l~~~~l~~-~-------~~~~~~~l~~l--L~l~~n~-----~----~~~~~~~l~~l~~L~~L~l~~n~l~~~ 119 (286)
+|+.|.+......| . +..++..+++| |.+.... + .+.+...+..+|+|+.|.++++.-..
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~- 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS- 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-
Confidence 67888888665542 1 23334455666 5444332 1 12355667888999999998873112
Q ss_pred CccccccCCCCCEEecCCCCCCCCCCcccC--CCCCCCEEEccC--CccccccCCCCCCccc--cCCCCCCEEEccCCcc
Q 041406 120 VPSQLGVLTQLETLSLGSNSFTGEIPSELG--KLKNLKTLDLSG--NEFNGTVRDKLLPPEI--GELSLLEIFSSPSCSI 193 (286)
Q Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~ 193 (286)
.+. + .+++|+.|++..|.+.......+. .+++|+.|+++. +...+......+...+ ..+++|++|++.+|.+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 233 3 388999999998877643223333 689999999853 2221111001112223 2478999999999998
Q ss_pred cccCChhc---cCCCCCCEEEcccCCCCccc----chhhhCCCCCCEEEcccccccccCCccCCC-CCCCCEEEcccCc
Q 041406 194 TGPLPEEL---SKLKFLSMLDLSENPLKCSV----PKAIGELRKLGILNLGSTQLNGSIPAELGK-CENLMSVMLSCNA 264 (286)
Q Consensus 194 ~~~~p~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~ 264 (286)
.+..+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+.. + ..+++++.++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 75433333 24678999999999998643 334456799999999999988654333332 2 3568888876
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=3.4e-11 Score=98.30 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=12.3
Q ss_pred CCccceEecCC--CEEEEEc
Q 041406 48 CYWVGVSCQRG--RVIWLVL 65 (286)
Q Consensus 48 c~w~gv~c~~~--~l~~l~l 65 (286)
|.|.|+.|... +|..+..
T Consensus 78 ~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 78 KAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHTTSSCBCTTSCBCCCEEE
T ss_pred HhcCcEEECCCCCEEEEEEe
Confidence 67999999865 5544433
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=2.4e-09 Score=82.98 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=87.4
Q ss_pred cccCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCcc
Q 041406 146 SELGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCS 220 (286)
Q Consensus 146 ~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~ 220 (286)
..+...++|++|++++| .+.... ...+...+...++|++|++++|.+... +...+...++|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 44667889999999998 775321 112345666778899999999988743 334555667899999999998754
Q ss_pred ----cchhhhCCCCCCEEEc--cccccccc----CCccCCCCCCCCEEEcccCcCc
Q 041406 221 ----VPKAIGELRKLGILNL--GSTQLNGS----IPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 221 ----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456667788999999 78888754 3344555688999999999876
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=2.2e-09 Score=83.22 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=64.3
Q ss_pred cchhhcCCCCCCEEEccCC-CCCCC----CccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCC
Q 041406 96 LSRQVSNLKRLKQLSLGEN-QLSDF----VPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRD 170 (286)
Q Consensus 96 ~~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 170 (286)
+...+...+.|++|++++| .+... +...+...++|++|++++|.+......
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~------------------------ 83 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF------------------------ 83 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH------------------------
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH------------------------
Confidence 3444556677777777776 66532 122333445566666666655421110
Q ss_pred CCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEc--ccCCCCcc----cchhhhCCCCCCEEEccccc
Q 041406 171 KLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDL--SENPLKCS----VPKAIGELRKLGILNLGSTQ 240 (286)
Q Consensus 171 ~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 240 (286)
.+...+...+.|++|++++|.+... +...+...++|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 84 -~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 84 -ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1122333344455555555555422 2344555566777777 66666543 23344455677777777776
Q ss_pred cc
Q 041406 241 LN 242 (286)
Q Consensus 241 l~ 242 (286)
+.
T Consensus 163 i~ 164 (185)
T 1io0_A 163 QG 164 (185)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=1.3e-08 Score=83.06 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=33.0
Q ss_pred CCCCCCEEEcccCCCCc--ccchhhhCCCCCCEEEcccccccccCCccCCCCC--CCCEEEcccCcCccccc
Q 041406 203 KLKFLSMLDLSENPLKC--SVPKAIGELRKLGILNLGSTQLNGSIPAELGKCE--NLMSVMLSCNALSGSLP 270 (286)
Q Consensus 203 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~ 270 (286)
.+++|+.|++++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34455555555555554 2334444555555555555555532 1122222 56666666666554433
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=8.8e-06 Score=70.40 Aligned_cols=107 Identities=8% Similarity=0.115 Sum_probs=62.6
Q ss_pred cccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCC
Q 041406 176 EIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENL 255 (286)
Q Consensus 176 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 255 (286)
+|..+..|+.+.+..+... .....|..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++......|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445566666666544322 3334556666677776643 333233346667777777777654 443444567777778
Q ss_pred CEEEcccCcCccccchhccCcc-cceEEccCC
Q 041406 256 MSVMLSCNALSGSLPEQLSELP-VLIFAAEKN 286 (286)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~N 286 (286)
+++.+..+ ++..-..+|.+++ |+.+++.+|
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 87777544 4422234677777 777777653
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=5.9e-06 Score=71.51 Aligned_cols=207 Identities=15% Similarity=0.051 Sum_probs=114.6
Q ss_pred CEEEEEcCCCCcccccCccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCC--------------------
Q 041406 59 RVIWLVLPTHSLKGPLSPSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQL-------------------- 116 (286)
Q Consensus 59 ~l~~l~l~~~~l~~~~~~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-------------------- 116 (286)
+++.+.+..+. ...-..+|.....| +.+..+ +...-..+|.++..|+.+.+..+..
T Consensus 163 ~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 163 SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT
T ss_pred CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC
Confidence 67777776543 22223355566666 455443 3333334555666666555443321
Q ss_pred -CCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccc
Q 041406 117 -SDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITG 195 (286)
Q Consensus 117 -~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 195 (286)
+......+..+..++.+.+..+... .....+..+..++........+. ...+..+.+|+.+.+..+ +..
T Consensus 241 ~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--------~~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 241 FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--------EKTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--------TTTTTTCTTCCEEEECTT-CCE
T ss_pred ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--------cccccccccccccccccc-cce
Confidence 1111223344455555555443322 23334445555555555443321 234566777888877654 443
Q ss_pred cCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccC
Q 041406 196 PLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSE 275 (286)
Q Consensus 196 ~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 275 (286)
.....|..+.+|+.+++..+ ++......|.++++|+.+.+..+ ++......|.++++|+.+++..+ +. .+..++.+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~ 386 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED 386 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence 44556777888888888644 54334567778888888888766 55455567788888888888654 22 33456666
Q ss_pred cc-cceE
Q 041406 276 LP-VLIF 281 (286)
Q Consensus 276 l~-L~~l 281 (286)
.+ |+.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 66 6543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.1e-07 Score=72.18 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCCEEEccCCcccccCChhccCCCCCCEEEcccCC-CCcccchhhhCC----CCCCEEEcccc-cccccCCccCCCCCCC
Q 041406 182 LLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENP-LKCSVPKAIGEL----RKLGILNLGST-QLNGSIPAELGKCENL 255 (286)
Q Consensus 182 ~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~~~~L 255 (286)
.|++|+++++.++..--..+..+++|++|++++|. +++.....+..+ ++|++|++++| .+++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666554444455666777777777764 555444445543 35777777776 3665444455667777
Q ss_pred CEEEcccC-cCc
Q 041406 256 MSVMLSCN-ALS 266 (286)
Q Consensus 256 ~~L~l~~n-~l~ 266 (286)
++|+++++ .++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 77777776 344
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=1.1e-05 Score=69.90 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=121.5
Q ss_pred ccccccccc--cccCCCCCccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCC-----------
Q 041406 76 PSLFFLSSL--SDLSQNPLFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTG----------- 142 (286)
Q Consensus 76 ~~~~~l~~l--L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------- 142 (286)
.+|..+..| +.+..+ +...-..+|..+.+|+.+.+..+ ++......|..+..|+.+.+..+....
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 456677777 666543 33344567888999999998765 444445567777777777665543210
Q ss_pred ----------CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEc
Q 041406 143 ----------EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDL 212 (286)
Q Consensus 143 ----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l 212 (286)
.....+..+..++.+.+..+... + -...+.....++.+....+.+. ...+..+.+|+.+.+
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--i----~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--I----GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--E----CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred eEEECCCceecccccccccccceeEEcCCCcce--e----eccccccccccceeccCceeec---ccccccccccccccc
Confidence 01112233344444444333211 0 1233444555555555443321 235667888999888
Q ss_pred ccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEcccCcCccccchhccCcc-cceEEccC
Q 041406 213 SENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVMLSCNALSGSLPEQLSELP-VLIFAAEK 285 (286)
Q Consensus 213 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~~ 285 (286)
..+ ++......|..+++|+.+.+..+ ++......|.++.+|+.+++..+ ++..-..+|.+++ |+.+++..
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 665 44344567889999999999754 55455677899999999999877 6633345899988 99998764
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=2.9e-07 Score=69.92 Aligned_cols=89 Identities=8% Similarity=0.079 Sum_probs=70.5
Q ss_pred CChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccc-ccccCCccCCCC----CCCCEEEcccC-cCccccc
Q 041406 197 LPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQ-LNGSIPAELGKC----ENLMSVMLSCN-ALSGSLP 270 (286)
Q Consensus 197 ~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~~ 270 (286)
+|.....-..|+.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|++++| +++..-.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433233479999999999998777788899999999999994 776555555554 47999999998 5887666
Q ss_pred hhccCcc-cceEEccC
Q 041406 271 EQLSELP-VLIFAAEK 285 (286)
Q Consensus 271 ~~l~~l~-L~~l~l~~ 285 (286)
..+.+++ |++|++++
T Consensus 133 ~~L~~~~~L~~L~L~~ 148 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSD 148 (176)
T ss_dssp HHGGGCTTCCEEEEES
T ss_pred HHHhcCCCCCEEECCC
Confidence 7788899 99999976
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=7.3e-05 Score=64.60 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=72.5
Q ss_pred ccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCC
Q 041406 175 PEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCEN 254 (286)
Q Consensus 175 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 254 (286)
..+.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ ++......|.++++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 4577788999999964 455445567889999999999765 55344568889999999999755 55344567899999
Q ss_pred CCEEEcccCcCccccchhccCcc-cceEEcc
Q 041406 255 LMSVMLSCNALSGSLPEQLSELP-VLIFAAE 284 (286)
Q Consensus 255 L~~L~l~~n~l~~~~~~~l~~l~-L~~l~l~ 284 (286)
|+.+++.++... -..+.... |+.+.+.
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVA 386 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeC
Confidence 999999987543 13444455 6666554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.00052 Score=58.78 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=44.7
Q ss_pred cCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCE
Q 041406 178 GELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMS 257 (286)
Q Consensus 178 ~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 257 (286)
..+..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++......|.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 33444555554432 22122233444444555544332 22122234445555555555555554333444555555555
Q ss_pred EEcccCcCccccchhccCcc-cceEEc
Q 041406 258 VMLSCNALSGSLPEQLSELP-VLIFAA 283 (286)
Q Consensus 258 L~l~~n~l~~~~~~~l~~l~-L~~l~l 283 (286)
+.+..+ ++..-..+|.++. |+.+.+
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 555433 3311123444444 444443
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=9.9e-06 Score=62.64 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=73.7
Q ss_pred cCCCCCCCEEEccCC-ccccccCCCCCCccccCCCCCCEEEccCCccccc----CChhccCCCCCCEEEcccCCCCccc-
Q 041406 148 LGKLKNLKTLDLSGN-EFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP----LPEELSKLKFLSMLDLSENPLKCSV- 221 (286)
Q Consensus 148 l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~l~~~~- 221 (286)
+..-+.|++|+++++ .+... ....+.+.+..-+.|+.|+|++|.+... +.+.+...+.|++|+|+.|.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 455678888888875 65321 1112345566677888888888887643 3344556677888888888887443
Q ss_pred ---chhhhCCCCCCEEEcccc---cccc----cCCccCCCCCCCCEEEcccCcCc
Q 041406 222 ---PKAIGELRKLGILNLGST---QLNG----SIPAELGKCENLMSVMLSCNALS 266 (286)
Q Consensus 222 ---~~~~~~l~~L~~L~L~~n---~l~~----~~~~~~~~~~~L~~L~l~~n~l~ 266 (286)
.+.+..-+.|++|+|++| .+.. .+...+...++|.+|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 234455667888888754 3332 13334555677888888766543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.75 E-value=4.9e-06 Score=64.39 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=76.5
Q ss_pred ccCCCCCEEecCCC-CCCC----CCCcccCCCCCCCEEEccCCccccccCCCCCCccccCCCCCCEEEccCCccccc---
Q 041406 125 GVLTQLETLSLGSN-SFTG----EIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGP--- 196 (286)
Q Consensus 125 ~~l~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--- 196 (286)
..-+.|++|+++++ .+.. .+.+.+..-..|+.|++++|.+.... ...+.+.+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34567888888875 6652 23345666778888888888885322 223455566677888888888888743
Q ss_pred -CChhccCCCCCCEEEcccC---CCCcc----cchhhhCCCCCCEEEccccccc
Q 041406 197 -LPEELSKLKFLSMLDLSEN---PLKCS----VPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 197 -~p~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
+.+.+...+.|++|++++| .+... +...+..-++|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3345666677888888765 33322 3345566678888888766543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.00067 Score=58.05 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=81.4
Q ss_pred cCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCCCCCCCCCCcccCCCCCCCEEEccCCccccccCCCCCCccccCC
Q 041406 101 SNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGSNSFTGEIPSELGKLKNLKTLDLSGNEFNGTVRDKLLPPEIGEL 180 (286)
Q Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~l 180 (286)
.....+..+.+.... .......+.....++.+.+..+ +.......+..+..|+.+.+..+ ++. + -...+..+
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I----~~~aF~~~ 262 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-I----GSFLLQNC 262 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-E----CTTTTTTC
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-e----Ccccccee
Confidence 344445555443321 2223334555666666666443 22233344556666777666544 221 1 12455566
Q ss_pred CCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccccccccCCccCCCCCCCCEEEc
Q 041406 181 SLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLNGSIPAELGKCENLMSVML 260 (286)
Q Consensus 181 ~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 260 (286)
.+|+.+.+..+ +.......|..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++......|.++++|+.+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 66777666543 33233345666677777777666665334456666777777777543 33333445666677776666
Q ss_pred ccC
Q 041406 261 SCN 263 (286)
Q Consensus 261 ~~n 263 (286)
..+
T Consensus 341 p~~ 343 (379)
T 4h09_A 341 PKS 343 (379)
T ss_dssp CTT
T ss_pred CCc
Confidence 443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0025 Score=45.73 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=42.0
Q ss_pred CEEEccCCccc-ccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEccccccc
Q 041406 184 EIFSSPSCSIT-GPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGSTQLN 242 (286)
Q Consensus 184 ~~L~l~~n~~~-~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 242 (286)
..++.+++.++ ..+|..+ ..+|++|+|++|.|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888776 2455443 246889999999998555566778889999999988765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0066 Score=43.50 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=43.4
Q ss_pred CEEEccCCccccccCCCCCCccccCCCCCCEEEccCCcccccCChhccCCCCCCEEEcccCCCC
Q 041406 155 KTLDLSGNEFNGTVRDKLLPPEIGELSLLEIFSSPSCSITGPLPEELSKLKFLSMLDLSENPLK 218 (286)
Q Consensus 155 ~~L~l~~n~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~l~ 218 (286)
..++.+++.++.. .+|..+ ..++++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~----~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWA----SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTT----TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccc----cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4677788777410 133332 246999999999999666677888999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.04 E-value=31 Score=22.73 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=27.6
Q ss_pred CccccchhhcCCCCCCEEEccCCCCCCCCccccccCCCCCEEecCC
Q 041406 92 LFGQLSRQVSNLKRLKQLSLGENQLSDFVPSQLGVLTQLETLSLGS 137 (286)
Q Consensus 92 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 137 (286)
++..-..+|.+|..|+.+.+-.+ ++......|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334456677777777777543 4444455677777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.94 E-value=39 Score=22.27 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=27.8
Q ss_pred ccccCChhccCCCCCCEEEcccCCCCcccchhhhCCCCCCEEEcccc
Q 041406 193 ITGPLPEELSKLKFLSMLDLSENPLKCSVPKAIGELRKLGILNLGST 239 (286)
Q Consensus 193 ~~~~~p~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 239 (286)
++..-...|..+.+|+.+.+-.+- +......|..+.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 333334567777777777775542 2233456677777777777543
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=32.34 E-value=11 Score=16.77 Aligned_cols=7 Identities=43% Similarity=1.445 Sum_probs=5.8
Q ss_pred CCccceE
Q 041406 48 CYWVGVS 54 (286)
Q Consensus 48 c~w~gv~ 54 (286)
|+|+|..
T Consensus 8 cswrgle 14 (23)
T 3ox7_P 8 CSWRGLE 14 (26)
T ss_pred cccccch
Confidence 9999865
Done!