BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041407
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 81/112 (72%), Gaps = 4/112 (3%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
+L LL +N+ CADC SK PRWAS N+G+FIC++C+GIHR+LGVHIS+V+S LD W
Sbjct: 17 VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 76
Query: 61 PEQVAFMQSMGNEKSNKFWEAELPPNFDRSRI----EKFIRTKYEERKWVQK 108
EQ+ MQ MGN K+N+ +EA LP F R +I E FIR KYE++K++ +
Sbjct: 77 QEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
IL LL+ +N+ CADC +K PRWAS N+G+FIC++C+GIHR+LGVHIS+V+S LD W
Sbjct: 19 ILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 78
Query: 61 PEQVAFMQSMGNEKSNKFWEAELPPNFDRSR----IEKFIR 97
EQ+ MQ MGN K+ +EA LP NF R + +E FIR
Sbjct: 79 AEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 8/106 (7%)
Query: 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSM 70
N +C DC AP WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V M +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 71 GNEKSNKFWEAELP--------PNFDRSRIEKFIRTKYEERKWVQK 108
GN N+ +EA + P+ R E +I KY E+K++ K
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 8/106 (7%)
Query: 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSM 70
N +C DC AP WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V M +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 71 GNEKSNKFWEAELP--------PNFDRSRIEKFIRTKYEERKWVQK 108
GN N+ +EA + P+ R E +I KY E+K++ K
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 67/106 (63%), Gaps = 8/106 (7%)
Query: 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSM 70
N +C DC AP WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V M +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 71 GNEKSNKFWEAELP--------PNFDRSRIEKFIRTKYEERKWVQK 108
GN N+ +EA + P+ R E +I KY E+K++ K
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 9/126 (7%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
+LE LL+ P N CADCG+ P WAS LG+FIC+ CSGIHR++ +SKV+S LD W
Sbjct: 27 VLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWE 84
Query: 61 PEQVAFMQSMGNEKSNKFWEAELPPNFDRSR-------IEKFIRTKYEERKWVQKGATQP 113
QV FM S GN+ + +E+++P + R E++IR KYE ++++ +P
Sbjct: 85 EAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEP 144
Query: 114 TTKAVQ 119
+ +
Sbjct: 145 YSAGYR 150
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 9/126 (7%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
+LE LL+ P N CADCG+ P WAS LG+FIC+ CSGIHR++ +SKV+S LD W
Sbjct: 25 VLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWE 82
Query: 61 PEQVAFMQSMGNEKSNKFWEAELPPNFDRSR-------IEKFIRTKYEERKWVQKGATQP 113
QV FM S GN+ + +E+++P + R E++IR KYE ++++ +P
Sbjct: 83 EAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEP 142
Query: 114 TTKAVQ 119
+ +
Sbjct: 143 YSAGYR 148
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 9 PENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQ 68
P N +C DCG+ P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 69 SMGNEKSNKFWEAELPPN--------FDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQI 120
+MGN N+ EA+LP + D +I KY E ++ ++ +P I
Sbjct: 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAI 159
Query: 121 -NNNVSKFLEGLKRG 134
N ++ LE G
Sbjct: 160 CNRDLLSVLEAFANG 174
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 9 PENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQ 68
P N +C DCG+ P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 69 SMGNEKSNKFWEAELPPN--------FDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQI 120
+MGN N+ EA+LP + D +I KY E ++ ++ +P I
Sbjct: 81 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAI 140
Query: 121 -NNNVSKFLEGLKRG 134
N ++ LE G
Sbjct: 141 CNRDLLSVLEAFANG 155
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
I+ + ++ N C DCG+ P W S NLGI C++CSGIHR LGVH S+++S TLD
Sbjct: 7 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 66
Query: 61 PEQVAFMQSMGNEKSNKFWEAELP--------PNFDRSRIEKFIRTKYEERKWVQKGATQ 112
++ +++GN N+ E LP P D + +I KY ER++ +K
Sbjct: 67 TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHAD 126
Query: 113 PTTK 116
K
Sbjct: 127 TAAK 130
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDT-W 59
+ + L +P N+ C DCG+K P WAS+ G+F+C+ CSG+HRSLGVH+S +RST LD+ W
Sbjct: 27 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86
Query: 60 LPEQVAFMQSMGNEKSNKFWE 80
Q+ MQ GN + F+
Sbjct: 87 NWFQLRCMQVGGNANATAFFR 107
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSM 70
N +C DCG P W SVN GIF+C+ CSG+HRSLGVHIS VRS +D + EQ+ ++
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 71 GNEKSNKFWEAELPPNFDRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVS 125
GN+K + E N+ I FI ERK+ K A I +NV
Sbjct: 82 GNKKCQTYLE-----NYG---ISDFI----PERKYRTKAADHYRKILRSIVHNVD 124
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDT-W 59
I + L +P N+ C DCG+K P WAS+ G+F+C+ CSG HRSLGVH+S +RST LD+ W
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 60 LPEQVAFMQSMGNEKSNKFWE 80
Q+ MQ GN ++ F+
Sbjct: 79 SWFQLRCMQVGGNASASSFFH 99
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 9 PENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQ 68
PENR C DC S+ P W S++ +FIC+ CS HR +GVHIS VRS+ LD + P Q+ M
Sbjct: 34 PENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMD 93
Query: 69 SMGNEKSNKFWEAELPPNF 87
GN ++ +++ L NF
Sbjct: 94 IGGNGRARNYFKQVLGVNF 112
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQS 69
EN C +CG+ P+W SV GI+IC++CSG HR LGVH+S VRS T+D W ++ M++
Sbjct: 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 95
Query: 70 MGNEKSNKFWEAE 82
GN K +F E++
Sbjct: 96 GGNAKFREFLESQ 108
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQS 69
EN C +CG+ P+W SV GI+IC++CSG HR LGVH+S VRS T+D W ++ M++
Sbjct: 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 96
Query: 70 MGNEKSNKFWEAE 82
GN K +F E++
Sbjct: 97 GGNAKFREFLESQ 109
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
+L + LP NR+C DC + P + ++ +G F+C CSG R L +V+S ++ T+
Sbjct: 15 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFT 73
Query: 61 PEQVAFMQSMGNEKSNKFW-------EAELPPNFDRSRIEKFIRTKYEERKW 105
+++ F+Q GNE + W + +P D ++++F++ KYE+++W
Sbjct: 74 QQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWL 60
+L + LP NR+C DC + P + ++ +G F+C CSG R L +V+S ++ T+
Sbjct: 10 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFT 68
Query: 61 PEQVAFMQSMGNEKSNKFW-------EAELPPNFDRSRIEKFIRTKYEERKW 105
+++ F+Q GNE + W + +P D ++++F++ KYE+++W
Sbjct: 69 QQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 120
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 31.2 bits (69), Expect = 0.48, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 ENRECADCGSKA-PRWASVNLGIFICMQCSGIHRSLG 45
E REC +CG+ A P W G ++C C H+ G
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 37
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of
Murine Gata-1, Nmr, 25 Structures
Length = 46
Score = 31.2 bits (69), Expect = 0.57, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 ENRECADCGSKA-PRWASVNLGIFICMQCSGIHRSLG 45
E REC +CG+ A P W G ++C C H+ G
Sbjct: 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 39
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 31.2 bits (69), Expect = 0.60, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 10 ENRECADCGSKA-PRWASVNLGIFICMQCSGIHRSLGVHISKVR 52
E REC +CG+ A P W G ++C C H+ G + +R
Sbjct: 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46
>pdb|1RQ1|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 386
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 SGIHRSLGVHISK-VRSTTLDTWLPEQVAFMQSMGN 72
SG H S+G H+SK +T W P FM +GN
Sbjct: 190 SGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGN 225
>pdb|3NVJ|A Chain A, Crystal Structure Of The C143aC166A MUTANT OF ERO1P
Length = 393
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 SGIHRSLGVHISK-VRSTTLDTWLPEQVAFMQSMGN 72
SG H S+G H+SK +T W P FM +GN
Sbjct: 190 SGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGN 225
>pdb|3M31|A Chain A, Structure Of The C150aC295A MUTANT OF S. CEREVISIAE ERO1P
Length = 388
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 SGIHRSLGVHISK-VRSTTLDTWLPEQVAFMQSMGN 72
SG H S+G H+SK +T W P FM +GN
Sbjct: 189 SGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGN 224
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 ENRECADCGSKA-PRWASVNLGIFICMQCSGIHRSLG 45
E REC +CG+ A P W G ++C C H+ G
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG 37
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 19 SKAPRWASVNL---GIFICMQCSGIHRSLGVHI---SKVRSTTLDTWLP----------- 61
S+ R+ V L G F+ Q + +H + G+ I + ++ST+ + +L
Sbjct: 732 SQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSENMFLELFCQIISEPCF 791
Query: 62 ------EQVAFMQSMGNEKSNKFW------EAELPPNFDRSRIEKFIRTKYEERKWVQKG 109
EQ+ F+ G ++N ++E PP++ SR+E F+ T + + + +
Sbjct: 792 NTLRTKEQLGFIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEE 851
Query: 110 ATQPTTKAVQI 120
A Q +A+ I
Sbjct: 852 AFQKHIQALAI 862
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 29/131 (22%)
Query: 19 SKAPRWASVNL---GIFICMQCSGIHRSLGVHI---SKVRSTTLDTWLP----------- 61
S+ R+ V L G F+ Q + +H + G+ I + ++ST+ + +L
Sbjct: 732 SQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSENMFLELFCQIISEPCF 791
Query: 62 ------EQVAFMQSMGNEKSNKFW------EAELPPNFDRSRIEKFIRTKYEERKWVQKG 109
EQ+ ++ G ++N ++E PP++ SR+E F+ T + + + +
Sbjct: 792 NTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEE 851
Query: 110 ATQPTTKAVQI 120
A Q +A+ I
Sbjct: 852 AFQKHIQALAI 862
>pdb|2KZI|A Chain A, Solution Structure Of The Zher2 Affibody
pdb|2KZJ|A Chain A, Solution Structure Of The Zher2 Affibody (Alternative)
Length = 70
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 73 EKSNKFWEAELPPNFDRSRIEKFIRTKYEE 102
E N +WE L PN + + FIR+ Y++
Sbjct: 20 EMRNAYWEIALLPNLNNQQKRAFIRSLYDD 49
>pdb|3MZW|B Chain B, Her2 Extracelluar Region With Affinity Matured 3-Helix
Affibody Zher2:342
Length = 58
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 73 EKSNKFWEAELPPNFDRSRIEKFIRTKYEE 102
E N +WE L PN + + FIR+ Y++
Sbjct: 8 EMRNAYWEIALLPNLNNQQKRAFIRSLYDD 37
>pdb|1RP4|A Chain A, Structure Of Ero1p, Source Of Disulfide Bonds For
Oxidative Protein Folding In The Cell
Length = 389
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 SGIHRSLGVHISK-VRSTTLDTWLPEQVAFMQSMGN 72
SG H S+G H+SK +T W P F +GN
Sbjct: 190 SGFHASIGTHLSKEYLNTKTGKWEPNLDLFXARIGN 225
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 94 KFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEG---LKRGIPRKTRTLSLEEEILT 150
+F Y +W++K A P + ++ ++F E K G+P T L +E LT
Sbjct: 82 EFENIDYRCLQWLEKHAYLPQGSQL-LSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLT 140
Query: 151 KHIAQIAPPPTVGRSRGG 168
+ IA+++ P + + GG
Sbjct: 141 EAIAELSYPSVLKTTTGG 158
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 94 KFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEG---LKRGIPRKTRTLSLEEEILT 150
+F Y +W++K A P + ++ ++F E K G+P T L +E LT
Sbjct: 76 EFENIDYRCLQWLEKHAYLPQGSQL-LSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLT 134
Query: 151 KHIAQIAPPPTVGRSRGG 168
+ IA+++ P + + GG
Sbjct: 135 EAIAELSYPSVLKTTTGG 152
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 94 KFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEG---LKRGIPRKTRTLSLEEEILT 150
+F Y +W++K A P + ++ ++F E K G+P T L +E LT
Sbjct: 82 EFENIDYRCLQWLEKHAYLPQGSQL-LSKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLT 140
Query: 151 KHIAQIAPPPTVGRSRGG 168
+ IA+++ P + + GG
Sbjct: 141 EAIAELSYPSVLKTTTGG 158
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 12 RECADCGSKA-PRWASVNLGIFICMQCSGIHRSLG 45
REC +CG+ + P W G ++C C H+ G
Sbjct: 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG 40
>pdb|2ZZV|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Calcium And Lactate
pdb|2ZZV|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Calcium And Lactate
pdb|2ZZW|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Zinc And Lactate
pdb|2ZZW|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Zinc And Lactate
pdb|2ZZX|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Lactate
pdb|2ZZX|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Lactate
pdb|2ZZX|C Chain C, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Lactate
pdb|2ZZX|D Chain D, Crystal Structure Of A Periplasmic Substrate Binding
Protein In Complex With Lactate
Length = 361
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 37 CSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQ--SMGNEKSNKFWEAELPPNFDRSRIEK 94
+ +H +H + ++ L+ W + A ++ + NE KF +P F ++++K
Sbjct: 273 IAAVHEYSWIHYAGIQKANLEAWPKYRQAGVEVIRLSNEDVRKFRRLAIPIWFKWAKMDK 332
Query: 95 FIRTKYEERKWVQKG 109
+ R + + KG
Sbjct: 333 YSREAFASQLEYMKG 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,282,612
Number of Sequences: 62578
Number of extensions: 282722
Number of successful extensions: 615
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 36
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)