Query 041407
Match_columns 241
No_of_seqs 146 out of 1160
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 3.8E-42 1.3E-46 281.6 7.3 109 1-109 17-129 (134)
2 2crr_A Stromal membrane-associ 100.0 7.6E-42 2.6E-46 282.0 6.5 109 1-109 19-131 (141)
3 2olm_A Nucleoporin-like protei 100.0 1.2E-39 4E-44 268.7 9.5 108 1-109 15-129 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 3.2E-39 1.1E-43 302.1 0.8 177 1-194 24-214 (386)
5 3jue_A Arfgap with coiled-coil 100.0 9.1E-36 3.1E-40 275.9 10.1 109 1-109 35-151 (368)
6 2owa_A Arfgap-like finger doma 100.0 4.9E-36 1.7E-40 246.4 6.6 104 1-104 26-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 4.5E-35 1.6E-39 243.4 4.8 97 1-104 19-116 (149)
8 3dwd_A ADP-ribosylation factor 100.0 6E-34 2.1E-38 235.7 9.5 107 1-107 28-145 (147)
9 2p57_A GTPase-activating prote 100.0 8.3E-33 2.9E-37 228.5 6.8 84 1-84 27-111 (144)
10 3sub_A ADP-ribosylation factor 100.0 1.1E-32 3.7E-37 231.3 5.9 88 1-88 11-99 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 2.1E-31 7.2E-36 238.0 10.6 110 1-110 32-149 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 1.2E-31 4E-36 253.6 8.0 110 1-110 13-130 (497)
13 1dcq_A PYK2-associated protein 100.0 3E-31 1E-35 234.2 9.2 112 1-112 7-126 (278)
14 3o47_A ADP-ribosylation factor 100.0 7.5E-29 2.6E-33 225.4 9.7 84 1-84 27-110 (329)
15 1u5k_A Hypothetical protein; O 86.5 0.7 2.4E-05 39.5 4.6 56 7-78 146-201 (244)
16 1gnf_A Transcription factor GA 83.6 0.75 2.6E-05 30.5 2.6 38 9-46 2-40 (46)
17 2vut_I AREA, nitrogen regulato 78.8 1.4 4.8E-05 28.7 2.6 35 12-46 2-37 (43)
18 3dfx_A Trans-acting T-cell-spe 76.1 1.4 4.6E-05 31.2 2.1 39 8-46 4-43 (63)
19 4gat_A Nitrogen regulatory pro 74.6 2.5 8.6E-05 30.0 3.2 39 8-46 6-45 (66)
20 4hc9_A Trans-acting T-cell-spe 71.6 2.2 7.5E-05 33.3 2.5 36 11-46 5-41 (115)
21 3g9m_A Glucocorticoid receptor 59.3 5.3 0.00018 29.6 2.4 31 10-43 1-31 (90)
22 2kae_A GATA-type transcription 58.0 2.8 9.6E-05 30.2 0.7 37 9-46 6-45 (71)
23 1d4u_A Nucleotide excision rep 52.1 3.5 0.00012 32.1 0.4 32 9-40 3-35 (111)
24 1hcq_A Protein (estrogen recep 52.0 10 0.00034 27.8 2.9 32 9-43 2-33 (84)
25 2nll_B Protein (thyroid hormon 49.1 8.5 0.00029 29.3 2.1 29 12-43 2-30 (103)
26 2ebl_A COUP transcription fact 49.1 10 0.00036 28.0 2.6 33 8-43 4-36 (89)
27 4hc9_A Trans-acting T-cell-spe 48.5 13 0.00044 28.8 3.1 38 9-46 57-95 (115)
28 2han_B Ecdysone receptor; tran 48.3 11 0.00039 29.3 2.8 31 10-43 7-37 (119)
29 1r4i_A Androgen receptor; AR, 47.3 7.7 0.00026 29.7 1.7 33 8-43 4-36 (105)
30 1pls_A Pleckstrin homology dom 46.9 5.4 0.00019 28.9 0.7 56 135-196 19-74 (113)
31 2han_A Protein ultraspiracle; 45.2 12 0.00041 27.9 2.4 31 10-43 9-39 (93)
32 2a66_A Orphan nuclear receptor 44.8 8 0.00027 30.0 1.4 34 7-43 5-38 (113)
33 1dsz_A RAR-alpha, retinoic aci 43.2 12 0.00043 27.4 2.2 29 12-43 5-33 (86)
34 1cit_A NGFI-B, protein (orphan 40.9 17 0.00058 26.8 2.6 28 13-43 2-29 (89)
35 1kb2_A Vitamin D3 receptor; VD 40.6 13 0.00044 28.6 2.0 31 10-43 5-35 (110)
36 1a6y_A Orphan nuclear receptor 40.2 15 0.00051 27.4 2.2 31 10-43 6-36 (94)
37 1dsz_B RXR-alpha, retinoic aci 38.4 11 0.00037 27.7 1.2 31 10-43 4-34 (85)
38 1ynw_B Retinoic acid receptor 38.3 12 0.00041 28.3 1.4 30 11-43 3-32 (99)
39 1dl6_A Transcription factor II 35.0 25 0.00085 23.8 2.5 30 11-41 11-40 (58)
40 1lo1_A Steroid hormone recepto 35.0 12 0.00041 28.2 1.0 30 11-43 4-33 (98)
41 3dzy_D Peroxisome proliferator 34.3 18 0.00061 33.4 2.2 31 10-43 49-79 (419)
42 1v5p_A Pleckstrin homology dom 33.2 8.6 0.00029 29.5 -0.1 60 135-196 30-94 (126)
43 3cbb_A HNF-4-alpha, hepatocyte 33.2 20 0.0007 25.7 1.9 28 13-43 2-29 (78)
44 4hn5_A Glucocorticoid receptor 30.9 25 0.00087 27.3 2.3 33 8-43 26-58 (117)
45 3c5k_A HD6, histone deacetylas 28.9 39 0.0013 25.7 3.0 25 11-35 24-48 (109)
46 2dn6_A KIAA0640 protein; PH do 28.3 6.7 0.00023 28.2 -1.5 56 135-196 22-77 (115)
47 4glq_A Methyl-accepting chemot 27.9 32 0.0011 27.1 2.5 26 58-83 132-157 (171)
48 2uzg_A Ubiquitin carboxyl-term 26.1 32 0.0011 25.5 2.0 27 10-36 24-53 (97)
49 3dzy_A Retinoic acid receptor 25.2 19 0.00065 33.9 0.7 30 10-42 136-165 (467)
50 4bbr_M Transcription initiatio 25.0 32 0.0011 31.0 2.1 28 13-40 23-51 (345)
51 1pft_A TFIIB, PFTFIIBN; N-term 24.2 33 0.0011 22.0 1.6 28 12-40 6-33 (50)
52 2g45_A Ubiquitin carboxyl-term 23.4 43 0.0015 26.3 2.3 28 9-36 32-59 (129)
53 1wgq_A FYVE, rhogef and PH dom 22.9 16 0.00055 26.1 -0.2 54 135-195 22-75 (109)
54 2kgo_A Uncharacterized protein 22.7 13 0.00045 28.7 -0.8 34 10-43 55-89 (108)
55 1ffk_W Ribosomal protein L37AE 22.3 52 0.0018 23.6 2.4 32 6-39 22-53 (73)
56 3k1f_M Transcription initiatio 22.1 51 0.0017 27.9 2.6 29 13-41 23-52 (197)
57 1v88_A Oxysterol binding prote 22.0 32 0.0011 26.3 1.3 56 135-198 21-76 (130)
58 2lul_A Tyrosine-protein kinase 21.8 17 0.0006 28.8 -0.2 56 136-196 35-95 (164)
59 3k7a_M Transcription initiatio 21.7 27 0.00094 31.3 1.0 30 12-41 22-52 (345)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=281.57 Aligned_cols=109 Identities=53% Similarity=1.026 Sum_probs=102.7
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||.|++++|++|+.+||.++|++||
T Consensus 17 ~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e 96 (134)
T 2iqj_A 17 VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYE 96 (134)
T ss_dssp HHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC----hHHHHHHHHHHHhcCccccCC
Q 041407 81 AELPPNFD----RSRIEKFIRTKYEERKWVQKG 109 (241)
Q Consensus 81 a~lP~~~d----~~~re~fIraKYv~K~F~~~~ 109 (241)
+++|+... ...+++||++||++|+|+.+.
T Consensus 97 ~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 97 AYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp TTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred hcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence 99987543 345999999999999999774
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.6e-42 Score=281.98 Aligned_cols=109 Identities=54% Similarity=1.027 Sum_probs=102.6
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
||++|++.|+|+.|||||+++|+|||+|||||||++|+|+||.||+|||+||||+||.|++++|++|+.+||.++|++||
T Consensus 19 ~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e 98 (141)
T 2crr_A 19 ILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYE 98 (141)
T ss_dssp HHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGG
T ss_pred HHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC----hHHHHHHHHHHHhcCccccCC
Q 041407 81 AELPPNFD----RSRIEKFIRTKYEERKWVQKG 109 (241)
Q Consensus 81 a~lP~~~d----~~~re~fIraKYv~K~F~~~~ 109 (241)
+++|+... ...+++||++||++|+|+.+.
T Consensus 99 ~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 99 ANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp GSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCG
T ss_pred hcCCcccCCCCchHHHHHHHHHHHhcCcccCCC
Confidence 99987543 345999999999999999764
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1.2e-39 Score=268.65 Aligned_cols=108 Identities=30% Similarity=0.721 Sum_probs=99.7
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+| |+||||+||.|++++|++|+.+||..+|++||
T Consensus 15 ~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e 93 (140)
T 2olm_A 15 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWL 93 (140)
T ss_dssp HHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHH
Confidence 47889999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred hcCCC-------CCChHHHHHHHHHHHhcCccccCC
Q 041407 81 AELPP-------NFDRSRIEKFIRTKYEERKWVQKG 109 (241)
Q Consensus 81 a~lP~-------~~d~~~re~fIraKYv~K~F~~~~ 109 (241)
+++|+ ..+...+++||++||++++|+.+.
T Consensus 94 ~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~ 129 (140)
T 2olm_A 94 GLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPP 129 (140)
T ss_dssp TTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCH
T ss_pred hhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCc
Confidence 98753 223456889999999999999764
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=3.2e-39 Score=302.09 Aligned_cols=177 Identities=33% Similarity=0.588 Sum_probs=135.4
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+| +|||+||||+||.|++++|++|+.+||.++|++||
T Consensus 24 ~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e 102 (386)
T 3lju_X 24 AVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFE 102 (386)
T ss_dssp HHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHT
T ss_pred HHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHh
Confidence 47899999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hcCCCCC-------ChHHHHHHHHHHHhcCccccCCCCCCcchhhhhccchhhhhhhh--hcC---CCCcccccch--hH
Q 041407 81 AELPPNF-------DRSRIEKFIRTKYEERKWVQKGATQPTTKAVQINNNVSKFLEGL--KRG---IPRKTRTLSL--EE 146 (241)
Q Consensus 81 a~lP~~~-------d~~~re~fIraKYv~K~F~~~~~~~~~~~~~~~~~~~~~l~e~~--k~~---~~~k~r~l~~--~~ 146 (241)
+++|+.. ....|++||++||++++|+.++... ... ..+.||+ |+| ..+|.|+..| .+
T Consensus 103 ~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~~~------~~~---~~~keG~L~KrG~~~k~WkrRwFVL~~~~ 173 (386)
T 3lju_X 103 SKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE------PYS---AGYREGFLWKRGRDNGQFLSRKFVLTERE 173 (386)
T ss_dssp TTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGGGH------HHH---SSEEEEEEEEECSSSCCEEEEEEEEETTT
T ss_pred ccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCccCc------ccc---ccccccceeeeccccCCceEEEEEEEcCC
Confidence 9997532 1234899999999999999775411 111 1112222 333 4566999998 44
Q ss_pred HHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCceeEeec
Q 041407 147 EILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVP 194 (241)
Q Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (241)
.. +.++... ..+.+.|.|++.+...+.. ++..+..++|.+.
T Consensus 174 ~~----L~Yy~~~--~~~~p~g~I~L~~~~~~~~-~~~~~~~~~f~I~ 214 (386)
T 3lju_X 174 GA----LKYFNRN--DAKEPKAVMKIEHLNATFQ-PAKIGHPHGLQVT 214 (386)
T ss_dssp TE----EEEEC-------CCSEEEEGGGEEEEEC-HHHHTSTTCEEEE
T ss_pred CE----EEEECCC--CccCcccEEEeeccEEEEc-ccccCCCceEEEE
Confidence 43 3344443 5788889999988765532 2233467888874
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=9.1e-36 Score=275.87 Aligned_cols=109 Identities=47% Similarity=0.850 Sum_probs=102.0
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
||+.|++.|+|+.|||||+++|+|||+|+|||||++||||||.||+|||+||||+||.|++++|++|+.+||..+|++||
T Consensus 35 ~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e 114 (368)
T 3jue_A 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYE 114 (368)
T ss_dssp HHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHT
T ss_pred HHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC--------CChHHHHHHHHHHHhcCccccCC
Q 041407 81 AELPPN--------FDRSRIEKFIRTKYEERKWVQKG 109 (241)
Q Consensus 81 a~lP~~--------~d~~~re~fIraKYv~K~F~~~~ 109 (241)
+++|+. ..+..|++||++||++|+|+.+.
T Consensus 115 ~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 115 ARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp TTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred hhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccc
Confidence 998642 23456999999999999999874
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.9e-36 Score=246.45 Aligned_cols=104 Identities=35% Similarity=0.662 Sum_probs=94.3
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+++.|++.|+|+.|||||+++|+|||+|||+|||++|||+||+||+|||+|||++||+|++++|++|+.+||.++|++||
T Consensus 26 l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e 105 (138)
T 2owa_A 26 FFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFK 105 (138)
T ss_dssp HHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC---CChHHHHHHHHHHHhcCc
Q 041407 81 AELPPN---FDRSRIEKFIRTKYEERK 104 (241)
Q Consensus 81 a~lP~~---~d~~~re~fIraKYv~K~ 104 (241)
++.... ..+.+.+.|+.+||+++.
T Consensus 106 ~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 106 QVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 954322 234568889999999864
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=243.38 Aligned_cols=97 Identities=43% Similarity=0.814 Sum_probs=88.7
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCC-CChHHHHHHHhhCcHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDT-WLPEQVAFMQSMGNEKSNKFW 79 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~-Ws~~el~~mk~~GN~~aN~~w 79 (241)
+|+.|++.|+|+.|||||+++|+|||+|||||||++|+|+||.||+|||+|||++||. |++++|++|+.+||.++|++|
T Consensus 19 ~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~ 98 (149)
T 2crw_A 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFF 98 (149)
T ss_dssp HHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHHhcCc
Q 041407 80 EAELPPNFDRSRIEKFIRTKYEERK 104 (241)
Q Consensus 80 Ea~lP~~~d~~~re~fIraKYv~K~ 104 (241)
|++.+.. .+|+.||..+.
T Consensus 99 e~~~~~~-------~~i~~KY~s~~ 116 (149)
T 2crw_A 99 HQHGCST-------NDTNAKYNSRA 116 (149)
T ss_dssp HHHCCCC-------CCHHHHTTSHH
T ss_pred HhcCCCC-------cchhhCcCcHH
Confidence 9998653 24677776543
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=235.71 Aligned_cols=107 Identities=37% Similarity=0.707 Sum_probs=87.3
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+|+.|++.|+|+.|||||+++|+|||+|||||||++|||+||.||+|||+||||+||.|++++|++|+.+||.++|++||
T Consensus 28 ~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~e 107 (147)
T 3dwd_A 28 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLE 107 (147)
T ss_dssp HHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC--CCCChH---------HHHHHHHHHHhcCcccc
Q 041407 81 AELP--PNFDRS---------RIEKFIRTKYEERKWVQ 107 (241)
Q Consensus 81 a~lP--~~~d~~---------~re~fIraKYv~K~F~~ 107 (241)
++.. +..+.. ..++-|.++.+.+.|..
T Consensus 108 a~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 108 SQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp TSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred hCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9742 222211 15556777777777753
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.3e-33 Score=228.45 Aligned_cols=84 Identities=45% Similarity=0.900 Sum_probs=80.4
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCC-CChHHHHHHHhhCcHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDT-WLPEQVAFMQSMGNEKSNKFW 79 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~-Ws~~el~~mk~~GN~~aN~~w 79 (241)
+|+.|++.|+|+.|+|||+++|+|||+|||||||++|+|+||.||+|||+|||++||+ |++++|++|+.+||.++|++|
T Consensus 27 ~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~ 106 (144)
T 2p57_A 27 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFF 106 (144)
T ss_dssp HHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred HhcCC
Q 041407 80 EAELP 84 (241)
Q Consensus 80 Ea~lP 84 (241)
|++-.
T Consensus 107 e~~g~ 111 (144)
T 2p57_A 107 RQHGC 111 (144)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 99843
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=1.1e-32 Score=231.32 Aligned_cols=88 Identities=44% Similarity=0.819 Sum_probs=82.1
Q ss_pred ChHhhhcC-CCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHH
Q 041407 1 ILEGLLKL-PENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFW 79 (241)
Q Consensus 1 il~~L~~~-pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~w 79 (241)
+|+.|++. |+|+.|||||+++|+|||++||||||++|||+||.||+|||+||||+||.|++++|++|+.+||.++|++|
T Consensus 11 ~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~ 90 (163)
T 3sub_A 11 FINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYL 90 (163)
T ss_dssp HHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHH
Confidence 46788875 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCC
Q 041407 80 EAELPPNFD 88 (241)
Q Consensus 80 Ea~lP~~~d 88 (241)
|++.+....
T Consensus 91 e~~g~~~~~ 99 (163)
T 3sub_A 91 ENYGISDFI 99 (163)
T ss_dssp HHTTCTTSC
T ss_pred HHcCCcccC
Confidence 998765443
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=238.01 Aligned_cols=110 Identities=37% Similarity=0.753 Sum_probs=101.6
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
||+.|++.|+|+.|+|||+++|+|+|+|+|+|+|++|||+||.||+|||+|||++||.|+++++.+|..+||..+|++||
T Consensus 32 ~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E 111 (301)
T 2b0o_E 32 LIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVME 111 (301)
T ss_dssp HHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC--------CChHHHHHHHHHHHhcCccccCCC
Q 041407 81 AELPPN--------FDRSRIEKFIRTKYEERKWVQKGA 110 (241)
Q Consensus 81 a~lP~~--------~d~~~re~fIraKYv~K~F~~~~~ 110 (241)
+.+|.. .+...+++||++||++++|..+..
T Consensus 112 ~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~ 149 (301)
T 2b0o_E 112 AQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 149 (301)
T ss_dssp TTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC
T ss_pred HhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccC
Confidence 988653 234569999999999999987643
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=1.2e-31 Score=253.62 Aligned_cols=110 Identities=37% Similarity=0.753 Sum_probs=102.1
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
||+.|++.|||+.|+|||+++|+|+|+|+|+|+|++|||+||+||+|||+|||++||.|+++++++|+.+||..+|++||
T Consensus 13 ~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E 92 (497)
T 3lvq_E 13 LIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVME 92 (497)
T ss_dssp HHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHT
T ss_pred HHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC--------CChHHHHHHHHHHHhcCccccCCC
Q 041407 81 AELPPN--------FDRSRIEKFIRTKYEERKWVQKGA 110 (241)
Q Consensus 81 a~lP~~--------~d~~~re~fIraKYv~K~F~~~~~ 110 (241)
+++|.. .+...+++||++||++++|..+..
T Consensus 93 ~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~ 130 (497)
T 3lvq_E 93 AQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT 130 (497)
T ss_dssp TTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred hhcccccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence 998642 234569999999999999987753
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.97 E-value=3e-31 Score=234.23 Aligned_cols=112 Identities=38% Similarity=0.729 Sum_probs=103.2
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
||+.|++.|+|+.|+|||+++|+|+|+|||+|+|++|||+||.||+|||+|||++||.|+++++.+|..+||..+|++||
T Consensus 7 ~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e 86 (278)
T 1dcq_A 7 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIME 86 (278)
T ss_dssp HHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHT
T ss_pred HHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC--------CChHHHHHHHHHHHhcCccccCCCCC
Q 041407 81 AELPPN--------FDRSRIEKFIRTKYEERKWVQKGATQ 112 (241)
Q Consensus 81 a~lP~~--------~d~~~re~fIraKYv~K~F~~~~~~~ 112 (241)
+.+|.. .+...+++||++||+.++|..+....
T Consensus 87 ~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~ 126 (278)
T 1dcq_A 87 CCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHAD 126 (278)
T ss_dssp TTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSS
T ss_pred hhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccc
Confidence 988642 24456999999999999999875543
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.5e-29 Score=225.44 Aligned_cols=84 Identities=43% Similarity=0.813 Sum_probs=81.1
Q ss_pred ChHhhhcCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHHHH
Q 041407 1 ILEGLLKLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKFWE 80 (241)
Q Consensus 1 il~~L~~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~wE 80 (241)
+|+.|++.|+|+.|||||+++|+|||+|+|||+|+.|||+||.||+|||+|||++||.|++++|++|+.+||.++|++||
T Consensus 27 ~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e 106 (329)
T 3o47_A 27 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLE 106 (329)
T ss_dssp HHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 041407 81 AELP 84 (241)
Q Consensus 81 a~lP 84 (241)
++..
T Consensus 107 ~~~~ 110 (329)
T 3o47_A 107 SQED 110 (329)
T ss_dssp TCSS
T ss_pred hcCC
Confidence 9853
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=86.54 E-value=0.7 Score=39.49 Aligned_cols=56 Identities=20% Similarity=0.541 Sum_probs=40.9
Q ss_pred cCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhcCCCccceeeecccCCCChHHHHHHHhhCcHHHHHH
Q 041407 7 KLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNEKSNKF 78 (241)
Q Consensus 7 ~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~LG~hiSkVKSl~lD~Ws~~el~~mk~~GN~~aN~~ 78 (241)
=.|.=..|+.||.++..+.+...|.++|..|...+ ..+.+++..|+.+-......+
T Consensus 146 ~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~ 201 (244)
T 1u5k_A 146 VIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRAS 201 (244)
T ss_dssp SCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHH
T ss_pred CCCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHH
Confidence 45666799999998777889999999999985321 357788888876544444343
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=83.58 E-value=0.75 Score=30.51 Aligned_cols=38 Identities=34% Similarity=0.861 Sum_probs=31.9
Q ss_pred CCCCCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 9 PENRECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 9 pgN~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
.....|++|++. -|.|-.-.-|-.||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356899999986 67899888999999999888777664
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=78.78 E-value=1.4 Score=28.75 Aligned_cols=35 Identities=26% Similarity=0.618 Sum_probs=29.3
Q ss_pred CCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 12 RECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 12 ~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
+.|++|+.. -|.|-.-..|-.+|-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 67999999999999999887776553
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=76.06 E-value=1.4 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCCCCCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 8 LPENRECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 8 ~pgN~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
......|++|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999986 67999999999999999887777664
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=74.61 E-value=2.5 Score=30.00 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=32.4
Q ss_pred CCCCCCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 8 LPENRECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 8 ~pgN~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
..+...|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 3456899999986 68999999999999999887776554
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=71.58 E-value=2.2 Score=33.29 Aligned_cols=36 Identities=33% Similarity=0.879 Sum_probs=29.8
Q ss_pred CCCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 11 NRECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 11 N~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
.+.|++||+. -|.|-.-.-|-++|-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999986 68999889999999999887766554
No 21
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=59.33 E-value=5.3 Score=29.57 Aligned_cols=31 Identities=19% Similarity=0.593 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
|+..|.=||.+.. ...||++.|..|++.-|.
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 5788999998765 458999999999998763
No 22
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=58.00 E-value=2.8 Score=30.19 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=28.8
Q ss_pred CCCCCCcCCCCC-CCCeeE--cccceeeehhchhhhhcCCC
Q 041407 9 PENRECADCGSK-APRWAS--VNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 9 pgN~~CaDCgs~-~P~was--~n~GifvC~~CsgiHR~LG~ 46 (241)
.....|++|+.. -|.|-. -.-| .||-.|.-.++..|.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 345899999986 689987 6777 899999888777654
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=52.11 E-value=3.5 Score=32.09 Aligned_cols=32 Identities=16% Similarity=0.435 Sum_probs=24.3
Q ss_pred CCCCCCcCCCCCCCC-eeEcccceeeehhchhh
Q 041407 9 PENRECADCGSKAPR-WASVNLGIFICMQCSGI 40 (241)
Q Consensus 9 pgN~~CaDCgs~~P~-was~n~GifvC~~Csgi 40 (241)
.+...|.+||...-. |..-+|++-||..|...
T Consensus 3 ~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 356689999986333 33569999999999864
No 24
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=51.98 E-value=10 Score=27.80 Aligned_cols=32 Identities=28% Similarity=0.684 Sum_probs=26.6
Q ss_pred CCCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 9 PENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 9 pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+...|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999998764 569999999999998875
No 25
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=49.14 E-value=8.5 Score=29.27 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=24.1
Q ss_pred CCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 12 RECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 12 ~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56888997765 458999999999998875
No 26
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=49.08 E-value=10 Score=28.03 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=27.0
Q ss_pred CCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 8 LPENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 8 ~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+.+..|.=||.+.. ...||++.|..|++..|.
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 355678999998765 458999999999998874
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=48.54 E-value=13 Score=28.81 Aligned_cols=38 Identities=18% Similarity=0.458 Sum_probs=32.3
Q ss_pred CCCCCCcCCCCC-CCCeeEcccceeeehhchhhhhcCCC
Q 041407 9 PENRECADCGSK-APRWASVNLGIFICMQCSGIHRSLGV 46 (241)
Q Consensus 9 pgN~~CaDCgs~-~P~was~n~GifvC~~CsgiHR~LG~ 46 (241)
.....|++|+.. -|.|-.-..|-.||-.|.-..+..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 457899999986 68999999999999999887776664
No 28
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=48.29 E-value=11 Score=29.27 Aligned_cols=31 Identities=26% Similarity=0.702 Sum_probs=26.2
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+..|.=||.... ...||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999998764 569999999999998874
No 29
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=47.31 E-value=7.7 Score=29.66 Aligned_cols=33 Identities=24% Similarity=0.710 Sum_probs=26.2
Q ss_pred CCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 8 LPENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 8 ~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+....|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEAS---GAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCC---ceEeCCcchhhhhhhhce
Confidence 456788999997643 569999999999998875
No 30
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=46.86 E-value=5.4 Score=28.87 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=39.1
Q ss_pred CCCcccccchhHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCceeEeeccC
Q 041407 135 IPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTN 196 (241)
Q Consensus 135 ~~~k~r~l~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
..++.|++.|.... +..+... ....+.|.|+|.....+....+.....++|.+.++
T Consensus 19 ~~Wk~R~fvL~~~~----L~yy~~~--~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~ 74 (113)
T 1pls_A 19 NTWKPMWVVLLEDG----IEFYKKK--SDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTT 74 (113)
T ss_dssp SCCEEEEEEEETTE----EEEESST--TCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEET
T ss_pred CCceEEEEEEECCE----EEEEeCC--CCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcC
Confidence 45779999997653 4444443 56677899999988766444555667889988654
No 31
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=45.20 E-value=12 Score=27.87 Aligned_cols=31 Identities=26% Similarity=0.803 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 3578999998764 569999999999998874
No 32
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=44.78 E-value=8 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.652 Sum_probs=24.8
Q ss_pred cCCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 7 KLPENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 7 ~~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
..+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 5 DEDLEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp -----CBCTTTCCBEE---EEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCCcEeCCCCc---ceeeCcccHHHHHHHHhh
Confidence 3456678999997643 569999999999998874
No 33
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=43.17 E-value=12 Score=27.37 Aligned_cols=29 Identities=28% Similarity=0.723 Sum_probs=23.6
Q ss_pred CCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 12 RECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 12 ~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46899998765 458999999999998874
No 34
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=40.93 E-value=17 Score=26.82 Aligned_cols=28 Identities=32% Similarity=0.826 Sum_probs=23.2
Q ss_pred CCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 13 ECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 13 ~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888987654 569999999999998874
No 35
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=40.60 E-value=13 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.737 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
....|.=||.... ...||++.|..|++..|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3467999998765 458999999999998875
No 36
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=40.21 E-value=15 Score=27.44 Aligned_cols=31 Identities=29% Similarity=0.682 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 3467999998764 568999999999998874
No 37
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=38.39 E-value=11 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.801 Sum_probs=25.4
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999998654 458999999999998874
No 38
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=38.26 E-value=12 Score=28.27 Aligned_cols=30 Identities=27% Similarity=0.829 Sum_probs=23.8
Q ss_pred CCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 11 N~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
...|.=||.+.. ...||++.|..|++..|.
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 457999998664 468999999999998874
No 39
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.99 E-value=25 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCCcCCCCCCCCeeEcccceeeehhchhhh
Q 041407 11 NRECADCGSKAPRWASVNLGIFICMQCSGIH 41 (241)
Q Consensus 11 N~~CaDCgs~~P~was~n~GifvC~~CsgiH 41 (241)
-..|.+|+.....+ ...-|..+|..|.-+-
T Consensus 11 ~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 34799999865322 4567999999996553
No 40
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=34.98 E-value=12 Score=28.19 Aligned_cols=30 Identities=27% Similarity=0.670 Sum_probs=24.9
Q ss_pred CCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 11 NRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 11 N~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467889997664 569999999999998874
No 41
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=34.30 E-value=18 Score=33.43 Aligned_cols=31 Identities=35% Similarity=0.782 Sum_probs=25.3
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.+..|.=||..... ..||+..|..|++..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 36679999987764 48999999999998764
No 42
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=33.23 E-value=8.6 Score=29.47 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCCcccccchhHHHhhhhhhccCCCC---CCCCCCCCCccccccCCCCC--CCCCCCCceeEeeccC
Q 041407 135 IPRKTRTLSLEEEILTKHIAQIAPPP---TVGRSRGGSLDMNEKAAAPI--PPRVPPSVAEVQVPTN 196 (241)
Q Consensus 135 ~~~k~r~l~~~~~~~~~~~~~~~p~~---~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 196 (241)
..+|.|+..|+... ..+..|...| +....+.|+|+|..+..+.. +...+...|+|.+.+|
T Consensus 30 k~WkrRwFvL~~~~--~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~ 94 (126)
T 1v5p_A 30 GKFLRRYFILDTQA--NCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINAL 94 (126)
T ss_dssp SCEEEEEEEEETTT--TEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECS
T ss_pred CCccceEEEEecCC--CCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEECC
Confidence 45669999997310 1123454443 24667779999987544421 1234455688877543
No 43
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=33.19 E-value=20 Score=25.70 Aligned_cols=28 Identities=36% Similarity=0.754 Sum_probs=22.8
Q ss_pred CCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 13 ECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 13 ~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4778887665 458999999999998874
No 44
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=30.95 E-value=25 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCCCCCCcCCCCCCCCeeEcccceeeehhchhhhhc
Q 041407 8 LPENRECADCGSKAPRWASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 8 ~pgN~~CaDCgs~~P~was~n~GifvC~~CsgiHR~ 43 (241)
......|.=||.+.. ...||++.|..|++.-|.
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFRR 58 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFKR 58 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhhc
Confidence 344678999998765 458999999999997763
No 45
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=28.93 E-value=39 Score=25.74 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=21.2
Q ss_pred CCCCcCCCCCCCCeeEcccceeeeh
Q 041407 11 NRECADCGSKAPRWASVNLGIFICM 35 (241)
Q Consensus 11 N~~CaDCgs~~P~was~n~GifvC~ 35 (241)
...|.+|++....|+++.-|-+-|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999999888998888888774
No 46
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.34 E-value=6.7 Score=28.24 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCCcccccchhHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCceeEeeccC
Q 041407 135 IPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTN 196 (241)
Q Consensus 135 ~~~k~r~l~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
..++.|+..|.+. .+..+..+ ....+.|.|+|.....+.......+..++|.+.++
T Consensus 22 ~~Wk~R~fvL~~~----~L~yy~~~--~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~ 77 (115)
T 2dn6_A 22 KNWTERWFVLKPN----IISYYVSE--DLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCF 77 (115)
T ss_dssp SCEEEEEEEECSS----CEEEESST--TCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECS
T ss_pred CCcEEeEEEEECC----EEEEeCCC--CCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeC
Confidence 4567899999764 33444433 44566788999876655444445566778888654
No 47
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=27.94 E-value=32 Score=27.15 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCChHHHHHHHhhCcHHHHHHHHhcC
Q 041407 58 TWLPEQVAFMQSMGNEKSNKFWEAEL 83 (241)
Q Consensus 58 ~Ws~~el~~mk~~GN~~aN~~wEa~l 83 (241)
.|+++|+++|+.+++..+-.+-.+++
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999998888777765
No 48
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=26.10 E-value=32 Score=25.50 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=21.3
Q ss_pred CCCCCcCCCCCCCC-eeEcc--cceeeehh
Q 041407 10 ENRECADCGSKAPR-WASVN--LGIFICMQ 36 (241)
Q Consensus 10 gN~~CaDCgs~~P~-was~n--~GifvC~~ 36 (241)
....|.+|++.+.. |+++. -|-+-|.+
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 46789999966656 99988 88888844
No 49
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=25.24 E-value=19 Score=33.86 Aligned_cols=30 Identities=27% Similarity=0.814 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCCCCeeEcccceeeehhchhhhh
Q 041407 10 ENRECADCGSKAPRWASVNLGIFICMQCSGIHR 42 (241)
Q Consensus 10 gN~~CaDCgs~~P~was~n~GifvC~~CsgiHR 42 (241)
.+..|.=||.+... ..||+..|..|++..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35579999987664 4899999999999776
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=24.95 E-value=32 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.647 Sum_probs=21.5
Q ss_pred CCcCCCCCCCCe-eEcccceeeehhchhh
Q 041407 13 ECADCGSKAPRW-ASVNLGIFICMQCSGI 40 (241)
Q Consensus 13 ~CaDCgs~~P~w-as~n~GifvC~~Csgi 40 (241)
.|-+||...+.- ....-|-.||..|.-|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 799999854443 3567899999999654
No 51
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.19 E-value=33 Score=21.97 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=20.0
Q ss_pred CCCcCCCCCCCCeeEcccceeeehhchhh
Q 041407 12 RECADCGSKAPRWASVNLGIFICMQCSGI 40 (241)
Q Consensus 12 ~~CaDCgs~~P~was~n~GifvC~~Csgi 40 (241)
..|-+|++....+ .-.-|-++|..|.-+
T Consensus 6 ~~CP~C~~~~l~~-d~~~gelvC~~CG~v 33 (50)
T 1pft_A 6 KVCPACESAELIY-DPERGEIVCAKCGYV 33 (50)
T ss_dssp CSCTTTSCCCEEE-ETTTTEEEESSSCCB
T ss_pred EeCcCCCCcceEE-cCCCCeEECcccCCc
Confidence 4799998854333 345689999999553
No 52
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=23.36 E-value=43 Score=26.32 Aligned_cols=28 Identities=21% Similarity=0.688 Sum_probs=21.4
Q ss_pred CCCCCCcCCCCCCCCeeEcccceeeehh
Q 041407 9 PENRECADCGSKAPRWASVNLGIFICMQ 36 (241)
Q Consensus 9 pgN~~CaDCgs~~P~was~n~GifvC~~ 36 (241)
|.+..|.+|+...--|+++.-|-+-|.+
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCCcCccccCcCceEEeccCCccccCc
Confidence 4567899999988778777777777743
No 53
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.87 E-value=16 Score=26.12 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=34.5
Q ss_pred CCCcccccchhHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCceeEeecc
Q 041407 135 IPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPT 195 (241)
Q Consensus 135 ~~~k~r~l~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (241)
..++.|+..|.+. .+..+..+ ....+.+.|+|.....+.. .+.....++|.+.+
T Consensus 22 ~~Wk~RwfvL~~~----~L~yyk~~--~~~~~~~~i~L~~~~~~~~-~~~~~~~~~F~i~~ 75 (109)
T 1wgq_A 22 KPWKHLWFVIKNK----VLYTYAAS--EDVAALESQPLLGFTVTLV-KDENSESKVFQLLH 75 (109)
T ss_dssp SCCEEEEEEEETT----EEEEESCT--TCSSCSEEEECSSEEEEEC-CCSSCSSSEEEEEE
T ss_pred CCceeEEEEEeCC----EEEEECCC--CcCccCceEECCCCEEEEC-CCCCCCCcEEEEEe
Confidence 4677999999764 33444443 4566778999988775533 23334567887754
No 54
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=22.70 E-value=13 Score=28.70 Aligned_cols=34 Identities=24% Similarity=0.641 Sum_probs=22.6
Q ss_pred CCCCCcCCCCCCCC-eeEcccceeeehhchhhhhc
Q 041407 10 ENRECADCGSKAPR-WASVNLGIFICMQCSGIHRS 43 (241)
Q Consensus 10 gN~~CaDCgs~~P~-was~n~GifvC~~CsgiHR~ 43 (241)
.-..|.+||.+=|. -.-.--++..|+.|...+-.
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E~ 89 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 89 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHHH
Confidence 35799999987431 11223467789999987643
No 55
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.31 E-value=52 Score=23.61 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=25.6
Q ss_pred hcCCCCCCCcCCCCCCCCeeEcccceeeehhchh
Q 041407 6 LKLPENRECADCGSKAPRWASVNLGIFICMQCSG 39 (241)
Q Consensus 6 ~~~pgN~~CaDCgs~~P~was~n~GifvC~~Csg 39 (241)
..++..-.|.-||....... ..||+.|..|.-
T Consensus 22 ~~q~~ky~C~fCgk~~vkR~--a~GIW~C~~C~~ 53 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFPKLKRA--STSIWVCGHCGY 53 (73)
T ss_pred HhcccCccCCCCCCceeEEE--EeEEEECCCCCc
Confidence 56778889999998766655 469999999954
No 56
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.14 E-value=51 Score=27.91 Aligned_cols=29 Identities=21% Similarity=0.604 Sum_probs=22.2
Q ss_pred CCcCCCCCCCCee-Ecccceeeehhchhhh
Q 041407 13 ECADCGSKAPRWA-SVNLGIFICMQCSGIH 41 (241)
Q Consensus 13 ~CaDCgs~~P~wa-s~n~GifvC~~CsgiH 41 (241)
.|-+||...+.-+ ...-|-.||.+|.-|-
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 7999998544433 4678999999997653
No 57
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.96 E-value=32 Score=26.33 Aligned_cols=56 Identities=7% Similarity=-0.070 Sum_probs=36.2
Q ss_pred CCCcccccchhHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCCCCCceeEeeccCCC
Q 041407 135 IPRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRVPPSVAEVQVPTNNK 198 (241)
Q Consensus 135 ~~~k~r~l~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (241)
..++.|+..|.+.. +..+..+ ....+-|+|+|....-++.+. ....|+|.+.+|..
T Consensus 21 k~WkrRWfVLk~~~----L~yyk~~--~~~~p~G~I~L~~~~v~~~~~--~~~~~~F~i~~~~~ 76 (130)
T 1v88_A 21 KSWTKLWCVLKPGV----LLIYKTQ--KNGQWVGTVLLNACEIIERPS--KKDGFCFKLFHPLE 76 (130)
T ss_dssp SSCEEEEEEEETTE----EEEESCS--SSCCCCEEEECSSCEECCCCT--TTSSCEEEEECTTC
T ss_pred CCceEEEEEEECCE----EEEECCC--CCCCceEEEEcCCCEEEECCC--CCCCeEEEEEcCCc
Confidence 45779999997643 3344444 457778999998876443322 23458999876643
No 58
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=21.83 E-value=17 Score=28.76 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCcccccchhHHHhhhhhhccCCCCCCCCCCCCCccccccCCCCCCCCC-----CCCceeEeeccC
Q 041407 136 PRKTRTLSLEEEILTKHIAQIAPPPTVGRSRGGSLDMNEKAAAPIPPRV-----PPSVAEVQVPTN 196 (241)
Q Consensus 136 ~~k~r~l~~~~~~~~~~~~~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 196 (241)
.||.|+..|.+.. |.++. .+.....+-|+|+|.....+..+... ....++|.+.++
T Consensus 35 nWKkRwFVL~~~~----L~Yyk-~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~ 95 (164)
T 2lul_A 35 NYKERLFVLTKSM----LTYYE-GRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHD 95 (164)
T ss_dssp CEEEEEEEEESSE----EEEEC-CCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECS
T ss_pred CceeEEEEEECCE----EEEEe-ccCcccccccEEEEeeeEEEEeccccccCcccccceeEEEecC
Confidence 4679999997653 34443 33345566789999877644222221 123456766554
No 59
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.69 E-value=27 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.558 Sum_probs=22.3
Q ss_pred CCCcCCCCCCCCe-eEcccceeeehhchhhh
Q 041407 12 RECADCGSKAPRW-ASVNLGIFICMQCSGIH 41 (241)
Q Consensus 12 ~~CaDCgs~~P~w-as~n~GifvC~~CsgiH 41 (241)
..|-+||...|.- ....-|-.||..|.-|.
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 3699999975422 24567999999998765
Done!