Query 041408
Match_columns 425
No_of_seqs 295 out of 2048
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 7.8E-24 1.7E-28 238.4 24.8 245 159-419 445-772 (2102)
2 PLN03200 cellulose synthase-in 99.9 9.8E-24 2.1E-28 237.5 24.6 251 159-423 12-274 (2102)
3 KOG0166 Karyopherin (importin) 99.9 1.4E-21 3.1E-26 194.7 20.6 260 136-412 215-488 (514)
4 KOG0166 Karyopherin (importin) 99.9 7.8E-21 1.7E-25 189.5 20.2 247 160-419 109-360 (514)
5 KOG4224 Armadillo repeat prote 99.9 2.8E-21 6E-26 181.6 14.4 248 159-423 125-376 (550)
6 KOG4224 Armadillo repeat prote 99.9 3.9E-20 8.4E-25 173.9 19.4 246 159-420 166-414 (550)
7 PF04564 U-box: U-box domain; 99.9 5.9E-22 1.3E-26 149.9 5.3 73 69-144 1-73 (73)
8 COG5064 SRP1 Karyopherin (impo 99.9 3E-20 6.5E-25 173.3 17.7 258 136-411 221-497 (526)
9 COG5064 SRP1 Karyopherin (impo 99.8 8.1E-20 1.8E-24 170.4 12.4 269 134-419 133-407 (526)
10 PF05804 KAP: Kinesin-associat 99.7 1.5E-15 3.2E-20 159.5 22.1 220 176-417 267-486 (708)
11 smart00504 Ubox Modified RING 99.7 3.5E-17 7.5E-22 120.6 5.8 63 72-138 1-63 (63)
12 PF05804 KAP: Kinesin-associat 99.6 8.4E-14 1.8E-18 146.4 18.4 179 221-414 266-445 (708)
13 KOG4199 Uncharacterized conser 99.6 1.1E-12 2.5E-17 122.8 22.4 249 158-418 143-411 (461)
14 PF04826 Arm_2: Armadillo-like 99.4 1.3E-11 2.9E-16 115.7 19.9 232 157-411 9-244 (254)
15 KOG4642 Chaperone-dependent E3 99.4 2.4E-13 5.2E-18 122.1 6.4 141 2-145 136-281 (284)
16 KOG2122 Beta-catenin-binding p 99.3 9.9E-12 2.2E-16 133.6 13.7 241 174-424 314-573 (2195)
17 PF04826 Arm_2: Armadillo-like 99.3 8.5E-11 1.9E-15 110.3 18.5 201 196-414 8-209 (254)
18 PF15227 zf-C3HC4_4: zinc fing 99.3 9.7E-13 2.1E-17 87.8 3.0 41 75-115 1-42 (42)
19 KOG1048 Neural adherens juncti 99.3 4.8E-11 1E-15 123.4 14.1 200 202-414 235-456 (717)
20 cd00020 ARM Armadillo/beta-cat 99.3 5E-11 1.1E-15 98.5 11.8 115 293-410 5-120 (120)
21 KOG1048 Neural adherens juncti 99.3 7E-11 1.5E-15 122.2 14.1 253 160-419 275-603 (717)
22 cd00020 ARM Armadillo/beta-cat 99.2 1.2E-10 2.7E-15 96.2 11.8 113 247-368 7-120 (120)
23 KOG4199 Uncharacterized conser 99.2 2.4E-09 5.2E-14 100.8 21.4 230 172-414 204-448 (461)
24 PLN03208 E3 ubiquitin-protein 99.2 2.8E-11 6.1E-16 106.4 5.0 63 66-129 12-87 (193)
25 TIGR00599 rad18 DNA repair pro 99.2 4.2E-11 9.1E-16 117.8 6.7 73 66-142 20-92 (397)
26 PF10508 Proteasom_PSMB: Prote 99.2 4.6E-09 9.9E-14 108.9 21.9 229 171-419 90-327 (503)
27 KOG2122 Beta-catenin-binding p 99.0 5.6E-09 1.2E-13 113.1 14.5 230 173-414 366-605 (2195)
28 PF11789 zf-Nse: Zinc-finger o 98.9 3.5E-10 7.5E-15 80.5 1.9 45 71-116 10-55 (57)
29 PF13923 zf-C3HC4_2: Zinc fing 98.9 1E-09 2.2E-14 72.3 3.1 38 75-115 1-39 (39)
30 PF13445 zf-RING_UBOX: RING-ty 98.9 1.4E-09 2.9E-14 72.6 2.7 38 75-113 1-43 (43)
31 PF10508 Proteasom_PSMB: Prote 98.9 4.3E-07 9.3E-12 94.2 22.4 232 161-414 4-235 (503)
32 KOG1222 Kinesin associated pro 98.8 7.5E-08 1.6E-12 94.6 13.6 179 221-414 280-459 (791)
33 KOG2042 Ubiquitin fusion degra 98.7 1.8E-08 3.9E-13 107.4 7.1 76 64-143 862-938 (943)
34 PF00097 zf-C3HC4: Zinc finger 98.7 1.2E-08 2.5E-13 68.0 3.5 40 75-115 1-41 (41)
35 KOG2160 Armadillo/beta-catenin 98.7 1.8E-06 4E-11 82.9 19.6 231 172-414 97-333 (342)
36 PF03224 V-ATPase_H_N: V-ATPas 98.7 7.8E-07 1.7E-11 86.8 17.6 222 161-393 59-294 (312)
37 PF03224 V-ATPase_H_N: V-ATPas 98.7 4.1E-07 8.9E-12 88.8 15.7 223 182-414 34-273 (312)
38 KOG0287 Postreplication repair 98.7 5.9E-09 1.3E-13 97.5 2.4 68 69-140 20-87 (442)
39 KOG1222 Kinesin associated pro 98.7 6E-07 1.3E-11 88.4 16.1 233 160-414 260-497 (791)
40 KOG4500 Rho/Rac GTPase guanine 98.7 2.1E-06 4.5E-11 83.7 19.0 245 159-407 86-428 (604)
41 PF14835 zf-RING_6: zf-RING of 98.7 7.3E-09 1.6E-13 73.8 1.2 59 71-135 6-65 (65)
42 KOG4500 Rho/Rac GTPase guanine 98.7 2.8E-06 6.2E-11 82.8 19.2 229 177-419 242-483 (604)
43 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.5E-08 5.4E-13 69.5 3.6 47 71-120 1-48 (50)
44 KOG0946 ER-Golgi vesicle-tethe 98.6 2.8E-06 6E-11 88.2 18.0 220 156-390 18-263 (970)
45 PHA02929 N1R/p28-like protein; 98.6 5.2E-08 1.1E-12 89.7 4.4 50 68-120 170-227 (238)
46 COG5113 UFD2 Ubiquitin fusion 98.6 1.6E-07 3.4E-12 94.7 8.0 75 65-143 847-922 (929)
47 KOG0823 Predicted E3 ubiquitin 98.6 3.7E-08 8.1E-13 88.4 3.1 58 71-129 46-103 (230)
48 KOG2160 Armadillo/beta-catenin 98.5 8.7E-06 1.9E-10 78.3 18.5 183 219-411 98-283 (342)
49 COG5432 RAD18 RING-finger-cont 98.5 6E-08 1.3E-12 89.0 3.1 70 68-141 21-90 (391)
50 KOG0320 Predicted E3 ubiquitin 98.5 5.9E-08 1.3E-12 83.3 2.6 50 72-125 131-182 (187)
51 KOG0168 Putative ubiquitin fus 98.5 9.2E-06 2E-10 85.0 18.8 239 159-415 166-418 (1051)
52 PRK09687 putative lyase; Provi 98.5 6E-06 1.3E-10 79.1 16.3 93 295-411 159-251 (280)
53 PF13639 zf-RING_2: Ring finge 98.5 7.2E-08 1.6E-12 65.2 1.9 40 74-116 2-44 (44)
54 KOG2177 Predicted E3 ubiquitin 98.5 1.3E-07 2.9E-12 91.6 4.2 71 68-144 9-79 (386)
55 KOG0317 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 87.6 3.5 54 68-125 235-288 (293)
56 KOG0168 Putative ubiquitin fus 98.4 9E-06 1.9E-10 85.1 17.3 188 221-422 185-376 (1051)
57 cd00162 RING RING-finger (Real 98.4 3.6E-07 7.9E-12 61.5 4.0 43 74-118 1-44 (45)
58 smart00184 RING Ring finger. E 98.3 1E-06 2.2E-11 57.2 3.7 39 75-115 1-39 (39)
59 PHA02926 zinc finger-like prot 98.2 7.8E-07 1.7E-11 79.4 3.7 59 68-129 166-236 (242)
60 TIGR00570 cdk7 CDK-activating 98.2 2.6E-06 5.7E-11 80.8 6.1 61 71-134 2-71 (309)
61 PRK09687 putative lyase; Provi 98.1 7.2E-05 1.6E-09 71.7 15.0 152 219-409 69-220 (280)
62 cd00256 VATPase_H VATPase_H, r 98.1 0.00074 1.6E-08 68.0 21.8 202 200-412 53-260 (429)
63 COG5222 Uncharacterized conser 98.1 3.2E-06 7E-11 78.1 4.4 68 73-142 275-343 (427)
64 KOG4646 Uncharacterized conser 98.1 5.6E-05 1.2E-09 62.8 10.7 133 247-393 16-149 (173)
65 cd00256 VATPase_H VATPase_H, r 98.1 0.00055 1.2E-08 68.9 20.0 209 172-393 68-288 (429)
66 PF14634 zf-RING_5: zinc-RING 98.0 4.9E-06 1.1E-10 56.1 3.2 41 74-117 1-44 (44)
67 KOG0978 E3 ubiquitin ligase in 98.0 4E-06 8.7E-11 87.4 3.8 55 70-127 641-695 (698)
68 KOG0311 Predicted E3 ubiquitin 98.0 1.4E-06 3E-11 82.7 -0.3 71 68-140 39-110 (381)
69 KOG4159 Predicted E3 ubiquitin 97.9 7.2E-06 1.6E-10 81.2 4.2 100 39-141 50-154 (398)
70 PF00514 Arm: Armadillo/beta-c 97.9 9E-06 2E-10 53.9 3.4 40 328-368 2-41 (41)
71 KOG0946 ER-Golgi vesicle-tethe 97.9 0.0025 5.4E-08 66.9 22.5 243 160-412 61-348 (970)
72 PF01602 Adaptin_N: Adaptin N 97.9 0.00053 1.1E-08 71.7 17.6 219 170-423 126-345 (526)
73 KOG2660 Locus-specific chromos 97.9 6.5E-06 1.4E-10 77.8 2.8 66 68-136 11-80 (331)
74 KOG2164 Predicted E3 ubiquitin 97.9 7.6E-06 1.7E-10 81.5 3.5 74 69-143 183-262 (513)
75 PRK13800 putative oxidoreducta 97.9 0.00066 1.4E-08 75.6 18.8 197 161-410 622-836 (897)
76 KOG2171 Karyopherin (importin) 97.9 0.00064 1.4E-08 74.0 17.7 220 173-411 363-595 (1075)
77 KOG4646 Uncharacterized conser 97.9 9.8E-05 2.1E-09 61.4 9.0 118 295-415 16-133 (173)
78 COG5574 PEX10 RING-finger-cont 97.8 1.2E-05 2.5E-10 73.8 3.1 50 70-121 213-263 (271)
79 KOG1293 Proteins containing ar 97.8 0.0012 2.6E-08 68.0 17.7 146 265-413 389-536 (678)
80 PRK13800 putative oxidoreducta 97.8 0.00072 1.6E-08 75.3 17.0 51 165-231 689-741 (897)
81 KOG0297 TNF receptor-associate 97.7 2.1E-05 4.6E-10 78.7 3.7 69 68-140 17-87 (391)
82 PF13646 HEAT_2: HEAT repeats; 97.7 0.00033 7.1E-09 54.4 9.7 88 249-364 1-88 (88)
83 KOG2973 Uncharacterized conser 97.7 0.0068 1.5E-07 57.4 19.4 234 162-410 46-315 (353)
84 PF05536 Neurochondrin: Neuroc 97.7 0.0017 3.6E-08 68.0 17.1 159 202-370 7-170 (543)
85 PF12678 zf-rbx1: RING-H2 zinc 97.7 4.1E-05 8.8E-10 57.7 3.7 44 69-116 17-73 (73)
86 KOG0289 mRNA splicing factor [ 97.7 9.1E-05 2E-09 72.3 6.9 51 73-127 1-52 (506)
87 KOG2759 Vacuolar H+-ATPase V1 97.7 0.0051 1.1E-07 60.5 18.9 227 173-411 172-439 (442)
88 KOG2734 Uncharacterized conser 97.7 0.0059 1.3E-07 60.3 19.0 228 178-413 104-349 (536)
89 PF05536 Neurochondrin: Neuroc 97.7 0.00077 1.7E-08 70.5 13.8 155 248-413 6-171 (543)
90 PF00514 Arm: Armadillo/beta-c 97.6 3.4E-05 7.3E-10 51.1 2.2 40 189-232 1-40 (41)
91 PF01602 Adaptin_N: Adaptin N 97.6 0.0031 6.7E-08 65.9 17.6 244 126-412 53-298 (526)
92 PF14664 RICTOR_N: Rapamycin-i 97.6 0.0029 6.4E-08 63.0 16.2 223 171-410 38-269 (371)
93 KOG1293 Proteins containing ar 97.6 0.0028 6E-08 65.4 16.0 153 171-336 390-544 (678)
94 KOG2171 Karyopherin (importin) 97.5 0.009 2E-07 65.4 19.7 225 173-414 264-508 (1075)
95 PF04641 Rtf2: Rtf2 RING-finge 97.5 7.9E-05 1.7E-09 70.7 3.3 54 69-127 110-167 (260)
96 KOG1517 Guanine nucleotide bin 97.4 0.0084 1.8E-07 64.9 17.5 227 174-412 486-734 (1387)
97 KOG2734 Uncharacterized conser 97.4 0.059 1.3E-06 53.5 21.7 243 159-410 124-400 (536)
98 PF12348 CLASP_N: CLASP N term 97.3 0.0026 5.6E-08 58.9 11.2 175 173-368 22-206 (228)
99 PF13646 HEAT_2: HEAT repeats; 97.3 0.00069 1.5E-08 52.5 6.1 85 297-405 1-87 (88)
100 PF11841 DUF3361: Domain of un 97.3 0.0059 1.3E-07 52.8 12.1 123 293-415 9-136 (160)
101 KOG2973 Uncharacterized conser 97.2 0.0066 1.4E-07 57.5 12.7 157 249-419 5-169 (353)
102 smart00185 ARM Armadillo/beta- 97.2 0.00064 1.4E-08 44.5 4.3 40 328-368 2-41 (41)
103 KOG1813 Predicted E3 ubiquitin 97.2 0.0002 4.3E-09 66.7 2.4 45 73-120 242-286 (313)
104 PF14664 RICTOR_N: Rapamycin-i 97.2 0.02 4.2E-07 57.2 16.5 180 182-378 7-186 (371)
105 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00032 6.9E-09 67.1 3.6 70 47-119 257-344 (491)
106 KOG0824 Predicted E3 ubiquitin 97.2 0.00024 5.2E-09 66.3 2.5 46 74-121 9-54 (324)
107 PF12348 CLASP_N: CLASP N term 97.1 0.0061 1.3E-07 56.4 12.0 153 248-414 54-210 (228)
108 PF12861 zf-Apc11: Anaphase-pr 97.1 0.00058 1.3E-08 52.2 4.0 49 72-120 32-82 (85)
109 KOG1002 Nucleotide excision re 97.1 0.00023 5E-09 70.9 2.3 52 70-121 534-587 (791)
110 PTZ00429 beta-adaptin; Provisi 97.1 0.029 6.2E-07 60.8 18.2 173 161-368 33-208 (746)
111 PF10165 Ric8: Guanine nucleot 97.1 0.05 1.1E-06 55.8 18.9 241 172-414 46-341 (446)
112 COG5369 Uncharacterized conser 97.1 0.0062 1.3E-07 61.6 11.6 187 178-378 409-604 (743)
113 KOG0802 E3 ubiquitin ligase [P 96.9 0.00034 7.5E-09 73.4 1.7 47 70-119 289-340 (543)
114 KOG2879 Predicted E3 ubiquitin 96.8 0.0011 2.4E-08 61.2 4.0 54 66-120 233-287 (298)
115 KOG3039 Uncharacterized conser 96.8 0.00082 1.8E-08 60.9 3.0 53 71-127 220-276 (303)
116 PTZ00429 beta-adaptin; Provisi 96.8 0.15 3.2E-06 55.4 20.5 244 127-411 80-327 (746)
117 KOG4367 Predicted Zn-finger pr 96.8 0.00049 1.1E-08 67.1 1.3 37 69-105 1-37 (699)
118 COG5152 Uncharacterized conser 96.8 0.00046 1E-08 60.4 1.0 45 73-120 197-241 (259)
119 KOG3036 Protein involved in ce 96.8 0.45 9.8E-06 44.0 22.1 242 160-411 26-292 (293)
120 KOG3039 Uncharacterized conser 96.7 0.00092 2E-08 60.6 2.5 39 68-106 39-77 (303)
121 COG5369 Uncharacterized conser 96.7 0.013 2.7E-07 59.4 10.6 166 247-421 431-605 (743)
122 PF13513 HEAT_EZ: HEAT-like re 96.7 0.003 6.6E-08 44.5 4.5 55 267-324 1-55 (55)
123 KOG0826 Predicted E3 ubiquitin 96.7 0.0017 3.6E-08 61.5 3.8 60 59-121 287-347 (357)
124 KOG2023 Nuclear transport rece 96.7 0.028 6E-07 58.4 12.7 164 199-376 127-293 (885)
125 KOG4413 26S proteasome regulat 96.6 0.3 6.5E-06 47.0 18.5 226 171-411 141-378 (524)
126 smart00185 ARM Armadillo/beta- 96.6 0.0028 6.1E-08 41.3 3.7 34 291-326 8-41 (41)
127 KOG4628 Predicted E3 ubiquitin 96.6 0.0024 5.2E-08 61.9 4.6 46 73-120 230-278 (348)
128 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0047 1E-07 43.5 4.3 55 311-366 1-55 (55)
129 KOG2759 Vacuolar H+-ATPase V1 96.4 0.22 4.8E-06 49.3 16.7 203 201-414 66-275 (442)
130 KOG1789 Endocytosis protein RM 96.4 0.031 6.7E-07 60.7 11.5 141 221-370 1742-1885(2235)
131 KOG2979 Protein involved in DN 96.4 0.0029 6.4E-08 58.1 3.6 46 72-118 176-222 (262)
132 KOG1517 Guanine nucleotide bin 96.4 0.037 7.9E-07 60.2 11.9 197 202-412 474-673 (1387)
133 TIGR02270 conserved hypothetic 96.3 0.22 4.8E-06 50.3 16.7 57 249-324 149-205 (410)
134 KOG3678 SARM protein (with ste 96.2 0.045 9.7E-07 54.7 11.0 169 194-376 174-344 (832)
135 KOG3678 SARM protein (with ste 96.2 0.24 5.1E-06 49.7 15.9 163 160-338 180-348 (832)
136 PF11841 DUF3361: Domain of un 96.2 0.05 1.1E-06 47.1 9.6 124 195-326 6-131 (160)
137 PF04078 Rcd1: Cell differenti 96.1 0.22 4.9E-06 46.5 14.1 206 165-378 2-228 (262)
138 KOG0804 Cytoplasmic Zn-finger 96.0 0.0033 7.2E-08 61.9 1.7 42 74-120 177-222 (493)
139 TIGR02270 conserved hypothetic 96.0 0.41 8.9E-06 48.4 16.7 89 247-366 117-205 (410)
140 COG5540 RING-finger-containing 95.8 0.0073 1.6E-07 56.6 3.3 47 73-121 324-373 (374)
141 KOG2023 Nuclear transport rece 95.8 1 2.2E-05 47.3 18.6 172 159-345 127-306 (885)
142 KOG1789 Endocytosis protein RM 95.6 0.26 5.6E-06 54.0 13.9 139 270-412 1742-1885(2235)
143 KOG1077 Vesicle coat complex A 95.6 1.2 2.6E-05 47.1 18.3 228 175-424 166-411 (938)
144 PF02891 zf-MIZ: MIZ/SP-RING z 95.5 0.015 3.2E-07 40.2 3.1 45 73-118 3-50 (50)
145 KOG1241 Karyopherin (importin) 95.5 0.24 5.2E-06 52.5 13.1 198 200-414 319-534 (859)
146 KOG3113 Uncharacterized conser 95.4 0.012 2.5E-07 53.8 2.9 51 70-126 109-163 (293)
147 KOG4692 Predicted E3 ubiquitin 95.4 0.017 3.6E-07 55.3 3.9 47 71-120 421-467 (489)
148 KOG3036 Protein involved in ce 95.3 1.9 4.2E-05 40.0 16.7 154 173-336 94-257 (293)
149 KOG2817 Predicted E3 ubiquitin 95.3 0.013 2.8E-07 57.3 2.8 44 73-116 335-381 (394)
150 KOG0212 Uncharacterized conser 95.1 0.62 1.3E-05 47.9 14.1 202 200-421 250-454 (675)
151 PF14668 RICTOR_V: Rapamycin-i 95.0 0.13 2.9E-06 38.5 7.1 65 314-378 4-68 (73)
152 KOG1242 Protein containing ada 95.0 3.7 8E-05 42.8 19.7 181 221-414 271-487 (569)
153 PF09759 Atx10homo_assoc: Spin 94.9 0.06 1.3E-06 43.1 5.4 69 269-337 2-71 (102)
154 COG1413 FOG: HEAT repeat [Ener 94.8 0.93 2E-05 44.4 14.9 60 337-406 179-238 (335)
155 KOG1062 Vesicle coat complex A 94.8 3.4 7.4E-05 44.4 19.2 180 219-414 309-548 (866)
156 KOG1734 Predicted RING-contain 94.8 0.006 1.3E-07 56.2 -0.6 54 66-120 214-281 (328)
157 KOG1242 Protein containing ada 94.8 3.4 7.4E-05 43.0 18.9 226 161-414 97-328 (569)
158 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.2 4.4E-06 39.8 7.9 93 271-368 4-96 (97)
159 KOG4413 26S proteasome regulat 94.7 2.9 6.3E-05 40.4 16.7 231 175-420 99-342 (524)
160 PF09759 Atx10homo_assoc: Spin 94.7 0.083 1.8E-06 42.3 5.6 68 175-244 3-70 (102)
161 PF05004 IFRD: Interferon-rela 94.7 1.7 3.7E-05 42.3 15.8 153 247-411 86-261 (309)
162 KOG0828 Predicted E3 ubiquitin 94.6 0.021 4.5E-07 57.0 2.3 32 87-120 603-634 (636)
163 PF12717 Cnd1: non-SMC mitotic 94.6 2 4.4E-05 38.1 15.0 109 219-349 3-112 (178)
164 PF04078 Rcd1: Cell differenti 94.5 1.2 2.5E-05 41.9 13.5 154 173-336 65-228 (262)
165 COG5096 Vesicle coat complex, 94.5 0.84 1.8E-05 49.2 14.1 163 172-369 33-196 (757)
166 PF13764 E3_UbLigase_R4: E3 ub 94.5 5.8 0.00013 43.5 20.6 253 160-421 117-416 (802)
167 KOG1645 RING-finger-containing 94.3 0.021 4.6E-07 55.7 1.7 60 73-134 5-69 (463)
168 smart00744 RINGv The RING-vari 94.3 0.063 1.4E-06 36.9 3.6 42 74-116 1-49 (49)
169 KOG1062 Vesicle coat complex A 94.1 4.1 9E-05 43.8 17.7 68 351-423 306-391 (866)
170 PF04063 DUF383: Domain of unk 94.0 0.54 1.2E-05 42.4 9.9 126 221-348 12-157 (192)
171 KOG2611 Neurochondrin/leucine- 93.8 1.7 3.6E-05 44.1 13.7 124 265-393 23-163 (698)
172 PF04063 DUF383: Domain of unk 93.6 0.55 1.2E-05 42.3 9.3 106 311-416 9-138 (192)
173 PF06371 Drf_GBD: Diaphanous G 93.6 0.34 7.3E-06 43.1 8.1 80 330-409 99-186 (187)
174 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.54 1.2E-05 37.4 8.2 68 247-324 27-94 (97)
175 KOG0213 Splicing factor 3b, su 93.5 0.86 1.9E-05 48.4 11.5 155 248-413 800-957 (1172)
176 PF05004 IFRD: Interferon-rela 93.5 5.5 0.00012 38.8 16.7 194 162-368 45-257 (309)
177 PF08045 CDC14: Cell division 93.5 0.87 1.9E-05 42.8 10.7 99 312-411 106-208 (257)
178 KOG1241 Karyopherin (importin) 93.4 4.4 9.6E-05 43.3 16.6 157 247-411 319-478 (859)
179 KOG3800 Predicted E3 ubiquitin 93.4 0.059 1.3E-06 50.5 2.7 46 74-121 2-52 (300)
180 KOG1785 Tyrosine kinase negati 93.3 0.035 7.7E-07 54.0 1.2 47 74-121 371-417 (563)
181 COG5109 Uncharacterized conser 93.3 0.061 1.3E-06 50.8 2.6 45 72-116 336-383 (396)
182 PF06371 Drf_GBD: Diaphanous G 93.2 1 2.2E-05 40.0 10.6 114 161-281 67-186 (187)
183 KOG1039 Predicted E3 ubiquitin 93.1 0.058 1.3E-06 52.7 2.3 51 70-120 159-221 (344)
184 KOG2999 Regulator of Rac1, req 93.1 2.1 4.6E-05 44.0 13.2 158 251-415 87-247 (713)
185 PF06025 DUF913: Domain of Unk 93.1 10 0.00022 38.1 18.2 128 294-422 105-244 (379)
186 PF02985 HEAT: HEAT repeat; I 93.1 0.15 3.2E-06 31.2 3.4 29 296-326 1-29 (31)
187 KOG0825 PHD Zn-finger protein 92.9 0.02 4.4E-07 60.0 -1.1 46 73-121 124-172 (1134)
188 KOG1077 Vesicle coat complex A 92.8 16 0.00034 39.1 20.3 196 201-420 330-560 (938)
189 KOG0827 Predicted E3 ubiquitin 92.6 0.094 2E-06 51.0 3.0 51 70-121 2-57 (465)
190 PF12717 Cnd1: non-SMC mitotic 92.5 1 2.2E-05 40.1 9.3 93 266-369 1-93 (178)
191 PF14447 Prok-RING_4: Prokaryo 92.3 0.079 1.7E-06 36.9 1.5 44 73-121 8-51 (55)
192 PF11698 V-ATPase_H_C: V-ATPas 92.2 0.72 1.6E-05 38.0 7.3 71 247-324 43-113 (119)
193 KOG1059 Vesicle coat complex A 92.2 3.8 8.3E-05 43.6 14.1 121 248-392 145-267 (877)
194 KOG1571 Predicted E3 ubiquitin 92.1 0.094 2E-06 50.8 2.2 48 66-119 299-346 (355)
195 PF11793 FANCL_C: FANCL C-term 92.0 0.04 8.7E-07 41.0 -0.2 49 72-120 2-66 (70)
196 PF10165 Ric8: Guanine nucleot 92.0 1.1 2.3E-05 46.0 10.1 106 309-414 44-172 (446)
197 PF10367 Vps39_2: Vacuolar sor 91.9 0.26 5.6E-06 39.6 4.5 36 65-100 71-108 (109)
198 COG5627 MMS21 DNA repair prote 91.9 0.16 3.5E-06 46.1 3.3 57 73-131 190-249 (275)
199 KOG1001 Helicase-like transcri 91.7 0.082 1.8E-06 56.6 1.5 46 73-120 455-500 (674)
200 KOG1059 Vesicle coat complex A 91.4 21 0.00045 38.3 18.3 173 162-370 183-367 (877)
201 PF12031 DUF3518: Domain of un 91.4 0.43 9.4E-06 44.1 5.6 83 220-307 140-228 (257)
202 PF05290 Baculo_IE-1: Baculovi 91.3 1.1 2.4E-05 37.2 7.4 51 71-121 79-133 (140)
203 PF05918 API5: Apoptosis inhib 90.9 3.8 8.3E-05 42.9 12.7 91 265-368 34-125 (556)
204 PF11698 V-ATPase_H_C: V-ATPas 90.9 0.56 1.2E-05 38.6 5.3 73 338-411 43-116 (119)
205 PF14570 zf-RING_4: RING/Ubox 90.8 0.2 4.4E-06 34.1 2.2 42 75-119 1-47 (48)
206 PF11701 UNC45-central: Myosin 90.6 2.1 4.6E-05 37.2 9.1 147 202-365 5-156 (157)
207 PF08167 RIX1: rRNA processing 90.4 2.4 5.3E-05 37.1 9.4 112 247-368 25-143 (165)
208 PF08045 CDC14: Cell division 90.4 2.5 5.3E-05 39.8 9.8 101 267-368 105-207 (257)
209 COG1413 FOG: HEAT repeat [Ener 90.3 7.4 0.00016 38.0 13.9 129 249-412 76-211 (335)
210 PF12031 DUF3518: Domain of un 90.2 0.79 1.7E-05 42.4 6.1 83 310-392 137-227 (257)
211 KOG0213 Splicing factor 3b, su 89.8 5.8 0.00013 42.4 12.7 115 296-415 800-917 (1172)
212 KOG0212 Uncharacterized conser 89.7 8.7 0.00019 39.9 13.6 164 241-414 202-369 (675)
213 KOG1061 Vesicle coat complex A 89.5 1.7 3.7E-05 46.3 8.9 106 247-370 86-191 (734)
214 COG5181 HSH155 U2 snRNP splice 89.5 2 4.3E-05 44.8 9.0 154 248-412 605-761 (975)
215 KOG2259 Uncharacterized conser 89.2 1.8 3.8E-05 45.5 8.4 131 265-414 385-515 (823)
216 KOG0883 Cyclophilin type, U bo 89.2 0.29 6.3E-06 47.7 2.7 51 72-126 40-90 (518)
217 PF12719 Cnd3: Nuclear condens 89.0 10 0.00023 36.5 13.5 110 247-370 26-145 (298)
218 COG5219 Uncharacterized conser 88.9 0.16 3.6E-06 54.7 0.9 51 69-120 1466-1523(1525)
219 KOG4535 HEAT and armadillo rep 88.8 1.2 2.6E-05 45.1 6.7 186 221-413 408-606 (728)
220 KOG2259 Uncharacterized conser 88.7 0.96 2.1E-05 47.4 6.2 116 196-335 369-484 (823)
221 KOG1240 Protein kinase contain 88.6 11 0.00025 42.5 14.4 138 265-412 590-727 (1431)
222 PF08324 PUL: PUL domain; Int 88.5 4.3 9.4E-05 38.4 10.4 181 172-359 77-265 (268)
223 KOG1824 TATA-binding protein-i 88.5 25 0.00054 38.9 16.5 199 165-376 862-1103(1233)
224 COG5194 APC11 Component of SCF 88.4 0.55 1.2E-05 35.2 3.1 43 74-120 33-81 (88)
225 PF11701 UNC45-central: Myosin 88.1 3.2 7E-05 36.0 8.4 134 265-407 17-156 (157)
226 PF08569 Mo25: Mo25-like; Int 88.0 7.2 0.00016 38.4 11.6 203 196-414 72-287 (335)
227 KOG3161 Predicted E3 ubiquitin 87.8 0.26 5.6E-06 51.0 1.5 60 71-135 10-76 (861)
228 KOG1824 TATA-binding protein-i 87.8 10 0.00022 41.8 13.2 183 205-407 573-758 (1233)
229 KOG1493 Anaphase-promoting com 87.5 0.24 5.3E-06 36.8 0.8 52 69-120 28-81 (84)
230 PF12460 MMS19_C: RNAPII trans 87.5 32 0.00069 34.9 16.5 111 247-370 271-396 (415)
231 PF12719 Cnd3: Nuclear condens 87.5 14 0.0003 35.7 13.3 154 219-391 42-207 (298)
232 PF02985 HEAT: HEAT repeat; I 87.4 1.6 3.4E-05 26.5 4.4 29 248-282 1-29 (31)
233 KOG3002 Zn finger protein [Gen 87.0 0.64 1.4E-05 44.8 3.6 62 68-139 44-106 (299)
234 PF04641 Rtf2: Rtf2 RING-finge 86.9 0.57 1.2E-05 44.4 3.2 39 68-106 30-69 (260)
235 COG5096 Vesicle coat complex, 86.8 22 0.00047 38.8 15.1 160 221-411 36-196 (757)
236 KOG1248 Uncharacterized conser 86.5 28 0.00062 39.3 16.0 228 171-414 667-902 (1176)
237 KOG4151 Myosin assembly protei 86.5 6.2 0.00013 42.4 10.7 198 192-408 496-697 (748)
238 PF07191 zinc-ribbons_6: zinc- 86.5 0.041 9E-07 40.4 -3.7 41 72-120 1-41 (70)
239 KOG2274 Predicted importin 9 [ 86.4 13 0.00028 40.7 13.1 157 221-392 467-624 (1005)
240 KOG4265 Predicted E3 ubiquitin 85.8 0.55 1.2E-05 45.6 2.4 47 72-121 290-337 (349)
241 KOG4172 Predicted E3 ubiquitin 85.5 0.24 5.1E-06 34.3 -0.1 45 73-119 8-53 (62)
242 KOG1060 Vesicle coat complex A 85.5 26 0.00057 37.9 14.5 93 310-412 156-248 (968)
243 PF07814 WAPL: Wings apart-lik 85.3 35 0.00076 34.0 15.1 235 160-414 21-303 (361)
244 COG5215 KAP95 Karyopherin (imp 85.1 18 0.00039 37.8 12.7 153 200-368 321-479 (858)
245 COG5175 MOT2 Transcriptional r 85.0 0.65 1.4E-05 44.5 2.4 50 69-121 12-65 (480)
246 PF08324 PUL: PUL domain; Int 85.0 17 0.00037 34.3 12.3 167 221-390 80-252 (268)
247 KOG4185 Predicted E3 ubiquitin 84.9 0.87 1.9E-05 44.0 3.4 64 73-138 4-77 (296)
248 KOG1248 Uncharacterized conser 84.8 33 0.0007 38.9 15.4 97 219-325 669-766 (1176)
249 KOG4535 HEAT and armadillo rep 84.5 1.6 3.6E-05 44.1 5.1 141 220-368 449-603 (728)
250 KOG4275 Predicted E3 ubiquitin 84.4 0.42 9.1E-06 44.9 0.9 44 69-119 297-341 (350)
251 KOG1967 DNA repair/transcripti 84.4 8.2 0.00018 42.3 10.5 151 199-362 866-1018(1030)
252 PF08569 Mo25: Mo25-like; Int 84.2 45 0.00097 32.9 16.6 183 173-370 91-285 (335)
253 KOG1058 Vesicle coat complex C 84.2 50 0.0011 35.8 15.8 72 336-413 394-466 (948)
254 KOG1060 Vesicle coat complex A 84.1 52 0.0011 35.8 15.9 15 310-324 193-207 (968)
255 PRK06266 transcription initiat 83.6 2.6 5.6E-05 37.5 5.6 112 11-140 42-167 (178)
256 KOG2611 Neurochondrin/leucine- 82.7 61 0.0013 33.3 15.8 116 248-367 57-181 (698)
257 KOG1058 Vesicle coat complex C 82.4 14 0.00031 39.7 11.1 105 295-411 243-347 (948)
258 PF14668 RICTOR_V: Rapamycin-i 82.2 4.9 0.00011 30.1 5.7 67 270-338 4-70 (73)
259 TIGR00373 conserved hypothetic 81.9 2.8 6E-05 36.6 5.0 93 11-121 34-140 (158)
260 KOG4362 Transcriptional regula 81.8 0.55 1.2E-05 49.6 0.7 68 70-138 19-86 (684)
261 COG5231 VMA13 Vacuolar H+-ATPa 81.6 54 0.0012 31.9 16.8 225 175-410 166-428 (432)
262 COG5181 HSH155 U2 snRNP splice 81.5 4 8.6E-05 42.7 6.6 116 295-415 604-722 (975)
263 KOG2025 Chromosome condensatio 81.5 25 0.00054 37.7 12.3 116 247-378 85-200 (892)
264 PF12460 MMS19_C: RNAPII trans 81.2 19 0.00041 36.6 11.6 111 201-328 272-396 (415)
265 KOG2956 CLIP-associating prote 80.8 70 0.0015 32.7 17.1 190 201-411 284-478 (516)
266 KOG2032 Uncharacterized conser 80.8 28 0.0006 35.7 12.1 167 198-376 252-423 (533)
267 COG5240 SEC21 Vesicle coat com 80.7 80 0.0017 33.3 16.3 66 159-233 262-332 (898)
268 COG5209 RCD1 Uncharacterized p 80.7 39 0.00085 31.2 11.9 153 173-335 115-277 (315)
269 PF08167 RIX1: rRNA processing 80.6 8.8 0.00019 33.6 7.8 115 295-414 25-147 (165)
270 KOG2274 Predicted importin 9 [ 80.4 33 0.00072 37.7 13.1 180 173-369 506-690 (1005)
271 COG5209 RCD1 Uncharacterized p 80.2 14 0.0003 34.0 8.9 150 221-377 117-277 (315)
272 COG5215 KAP95 Karyopherin (imp 79.8 23 0.0005 37.0 11.3 167 247-421 133-303 (858)
273 KOG2999 Regulator of Rac1, req 79.7 84 0.0018 32.9 17.0 161 204-374 87-249 (713)
274 KOG0414 Chromosome condensatio 79.5 9.1 0.0002 43.0 8.8 145 201-368 920-1064(1251)
275 KOG1061 Vesicle coat complex A 79.2 14 0.00031 39.7 9.9 93 217-328 99-191 (734)
276 PF06025 DUF913: Domain of Unk 78.5 36 0.00078 34.2 12.3 109 238-350 98-208 (379)
277 KOG0414 Chromosome condensatio 78.3 34 0.00073 38.8 12.7 140 160-326 918-1064(1251)
278 KOG1814 Predicted E3 ubiquitin 78.1 2.3 4.9E-05 42.1 3.5 48 69-116 181-236 (445)
279 PF05605 zf-Di19: Drought indu 78.0 1.3 2.8E-05 31.0 1.3 39 71-117 1-39 (54)
280 PF06416 DUF1076: Protein of u 77.9 2.9 6.2E-05 33.7 3.4 69 50-121 18-92 (113)
281 KOG4151 Myosin assembly protei 77.5 45 0.00097 36.1 13.0 133 246-391 503-637 (748)
282 KOG1941 Acetylcholine receptor 77.4 1.1 2.5E-05 43.8 1.2 45 71-116 364-412 (518)
283 PF05918 API5: Apoptosis inhib 76.6 1.1E+02 0.0023 32.4 16.0 96 201-322 60-158 (556)
284 KOG2114 Vacuolar assembly/sort 76.6 2.8 6E-05 45.3 3.9 45 69-119 837-882 (933)
285 PF11865 DUF3385: Domain of un 76.5 26 0.00056 30.5 9.5 146 246-408 9-155 (160)
286 KOG0298 DEAD box-containing he 76.5 0.72 1.6E-05 51.7 -0.4 48 69-119 1150-1198(1394)
287 PF14353 CpXC: CpXC protein 76.2 1.8 3.8E-05 36.2 2.0 48 72-120 1-49 (128)
288 PF12530 DUF3730: Protein of u 76.1 66 0.0014 29.8 14.5 127 219-368 16-151 (234)
289 KOG0396 Uncharacterized conser 74.5 2.6 5.6E-05 41.2 2.8 47 73-121 331-380 (389)
290 KOG1820 Microtubule-associated 74.2 78 0.0017 35.1 14.2 173 173-368 268-443 (815)
291 KOG2025 Chromosome condensatio 73.3 40 0.00087 36.2 11.1 104 200-321 85-188 (892)
292 KOG1020 Sister chromatid cohes 73.2 40 0.00086 39.3 11.8 130 271-416 795-927 (1692)
293 KOG2930 SCF ubiquitin ligase, 73.2 2.7 5.9E-05 33.2 2.1 27 89-118 80-106 (114)
294 PF14225 MOR2-PAG1_C: Cell mor 73.0 50 0.0011 31.3 11.1 67 295-368 188-254 (262)
295 PF14726 RTTN_N: Rotatin, an a 71.8 45 0.00099 26.5 8.8 68 293-363 28-95 (98)
296 PHA02862 5L protein; Provision 71.7 3.4 7.4E-05 34.9 2.5 46 74-121 4-54 (156)
297 KOG1240 Protein kinase contain 71.5 66 0.0014 36.8 12.8 237 164-424 429-699 (1431)
298 KOG1967 DNA repair/transcripti 71.5 38 0.00081 37.4 10.7 147 247-404 867-1018(1030)
299 PHA02825 LAP/PHD finger-like p 71.4 4.4 9.6E-05 34.9 3.2 48 72-121 8-60 (162)
300 KOG2933 Uncharacterized conser 70.2 40 0.00087 32.6 9.6 111 248-370 89-201 (334)
301 COG5240 SEC21 Vesicle coat com 69.5 1.6E+02 0.0034 31.2 16.2 110 220-349 280-389 (898)
302 KOG3665 ZYG-1-like serine/thre 69.4 81 0.0017 34.5 13.0 195 181-407 494-694 (699)
303 PF04499 SAPS: SIT4 phosphatas 69.2 38 0.00082 35.1 10.1 75 293-368 60-148 (475)
304 smart00531 TFIIE Transcription 69.1 9.9 0.00021 32.6 5.0 22 10-31 20-41 (147)
305 KOG1940 Zn-finger protein [Gen 69.0 3.9 8.4E-05 38.8 2.6 43 72-117 158-204 (276)
306 COG5231 VMA13 Vacuolar H+-ATPa 68.5 41 0.00089 32.7 9.2 127 265-393 161-291 (432)
307 KOG1820 Microtubule-associated 66.4 78 0.0017 35.1 12.1 174 221-414 270-447 (815)
308 KOG0825 PHD Zn-finger protein 66.3 4.2 9.1E-05 43.5 2.4 41 65-105 89-136 (1134)
309 KOG4718 Non-SMC (structural ma 66.3 3.1 6.7E-05 37.5 1.3 44 73-119 182-226 (235)
310 PF11707 Npa1: Ribosome 60S bi 65.4 1.4E+02 0.0031 29.2 14.8 163 202-371 58-240 (330)
311 KOG1020 Sister chromatid cohes 65.3 1.5E+02 0.0032 35.0 14.0 142 200-367 816-959 (1692)
312 KOG1943 Beta-tubulin folding c 64.8 2.5E+02 0.0055 31.9 17.1 231 164-410 345-611 (1133)
313 KOG0567 HEAT repeat-containing 64.6 1.3E+02 0.0028 28.5 11.5 77 219-324 202-278 (289)
314 KOG2062 26S proteasome regulat 64.5 12 0.00025 40.2 5.2 62 248-323 589-650 (929)
315 PF08746 zf-RING-like: RING-li 64.2 8.1 0.00018 25.6 2.7 40 75-115 1-43 (43)
316 PRK11088 rrmA 23S rRNA methylt 64.0 3.5 7.5E-05 39.2 1.3 26 72-97 2-30 (272)
317 KOG0301 Phospholipase A2-activ 61.7 2.3E+02 0.005 30.4 15.6 163 172-350 558-728 (745)
318 COG5218 YCG1 Chromosome conden 61.6 2.3E+02 0.0049 30.2 17.0 125 231-374 78-202 (885)
319 cd03569 VHS_Hrs_Vps27p VHS dom 61.0 56 0.0012 27.8 8.1 73 247-326 41-114 (142)
320 KOG2034 Vacuolar sorting prote 60.3 15 0.00032 40.2 5.2 39 68-106 813-853 (911)
321 KOG4653 Uncharacterized conser 60.1 2.8E+02 0.0061 30.8 15.2 190 157-368 724-918 (982)
322 COG1592 Rubrerythrin [Energy p 59.9 13 0.00028 32.6 3.9 12 72-83 134-145 (166)
323 PF12726 SEN1_N: SEN1 N termin 59.9 67 0.0015 35.3 10.5 123 295-424 441-566 (727)
324 KOG0314 Predicted E3 ubiquitin 59.8 4.5 9.8E-05 40.9 1.3 71 64-138 211-284 (448)
325 PF13764 E3_UbLigase_R4: E3 ub 59.6 70 0.0015 35.4 10.3 122 293-414 115-262 (802)
326 COG5220 TFB3 Cdk activating ki 59.5 5.7 0.00012 36.5 1.7 45 72-118 10-62 (314)
327 PF14446 Prok-RING_1: Prokaryo 59.3 9 0.00019 26.8 2.3 26 73-98 6-35 (54)
328 PF11865 DUF3385: Domain of un 59.0 1.2E+02 0.0026 26.3 10.0 70 247-324 86-155 (160)
329 COG2176 PolC DNA polymerase II 58.3 12 0.00026 42.3 4.2 40 68-121 910-951 (1444)
330 COG4530 Uncharacterized protei 58.1 10 0.00022 30.4 2.7 33 68-100 5-42 (129)
331 COG5098 Chromosome condensatio 57.9 43 0.00094 35.9 7.9 107 297-412 301-417 (1128)
332 cd03561 VHS VHS domain family; 57.3 88 0.0019 26.1 8.6 74 247-326 37-112 (133)
333 PF03854 zf-P11: P-11 zinc fin 56.4 6.3 0.00014 26.6 1.1 44 73-120 3-46 (50)
334 KOG4739 Uncharacterized protei 56.2 4 8.8E-05 37.6 0.2 49 83-139 15-64 (233)
335 smart00288 VHS Domain present 55.9 83 0.0018 26.3 8.2 74 247-326 37-111 (133)
336 cd03568 VHS_STAM VHS domain fa 54.5 50 0.0011 28.2 6.7 72 295-368 37-110 (144)
337 PF10272 Tmpp129: Putative tra 54.5 10 0.00022 37.5 2.7 33 89-121 305-352 (358)
338 PF01347 Vitellogenin_N: Lipop 54.5 47 0.001 35.5 8.1 102 199-323 485-586 (618)
339 PLN02189 cellulose synthase 54.3 9.9 0.00021 42.5 2.8 46 73-120 35-87 (1040)
340 cd03569 VHS_Hrs_Vps27p VHS dom 53.7 52 0.0011 28.0 6.7 72 295-368 41-114 (142)
341 PLN03086 PRLI-interacting fact 53.5 16 0.00034 38.5 4.0 55 66-120 447-515 (567)
342 PF10363 DUF2435: Protein of u 53.5 47 0.001 26.0 5.8 68 297-368 5-72 (92)
343 COG5236 Uncharacterized conser 52.9 10 0.00022 36.7 2.3 50 69-119 58-107 (493)
344 PLN02195 cellulose synthase A 52.8 12 0.00026 41.6 3.2 45 74-120 8-59 (977)
345 cd00730 rubredoxin Rubredoxin; 52.6 6.8 0.00015 27.0 0.8 13 68-80 30-42 (50)
346 COG1675 TFA1 Transcription ini 52.5 16 0.00034 32.4 3.3 54 69-140 110-163 (176)
347 cd03568 VHS_STAM VHS domain fa 52.4 99 0.0021 26.4 8.2 73 247-326 37-110 (144)
348 PF08506 Cse1: Cse1; InterPro 52.2 2E+02 0.0043 28.8 11.5 132 267-405 225-370 (370)
349 KOG1991 Nuclear transport rece 51.8 1.2E+02 0.0026 33.9 10.3 128 199-337 409-543 (1010)
350 PHA03096 p28-like protein; Pro 51.1 9.8 0.00021 36.5 1.9 45 73-117 179-231 (284)
351 KOG1991 Nuclear transport rece 50.3 1.9E+02 0.0042 32.4 11.5 140 247-393 410-555 (1010)
352 KOG2933 Uncharacterized conser 48.9 2.6E+02 0.0057 27.2 12.5 143 160-325 88-233 (334)
353 KOG0567 HEAT repeat-containing 48.7 98 0.0021 29.3 8.0 58 296-364 219-276 (289)
354 PF00301 Rubredoxin: Rubredoxi 48.6 7.6 0.00017 26.4 0.6 13 68-80 30-42 (47)
355 cd00350 rubredoxin_like Rubred 48.4 14 0.00029 22.9 1.7 10 109-118 17-26 (33)
356 PF10571 UPF0547: Uncharacteri 48.3 9.6 0.00021 22.3 0.9 10 110-119 15-24 (26)
357 KOG0211 Protein phosphatase 2A 47.6 4.3E+02 0.0093 29.2 14.0 110 248-368 438-547 (759)
358 smart00638 LPD_N Lipoprotein N 46.8 2.5E+02 0.0055 29.6 12.1 102 200-324 442-543 (574)
359 cd03561 VHS VHS domain family; 46.6 91 0.002 26.0 7.0 72 295-368 37-112 (133)
360 PLN02638 cellulose synthase A 46.3 16 0.00034 41.2 2.8 46 73-120 18-70 (1079)
361 KOG0915 Uncharacterized conser 46.1 3.8E+02 0.0081 31.9 13.2 153 201-370 999-1162(1702)
362 PF07814 WAPL: Wings apart-lik 45.9 93 0.002 31.0 8.1 93 297-391 23-116 (361)
363 PRK14559 putative protein seri 45.2 21 0.00045 38.4 3.5 12 109-120 41-52 (645)
364 COG5098 Chromosome condensatio 45.2 1.1E+02 0.0025 32.9 8.6 69 248-326 347-415 (1128)
365 KOG1812 Predicted E3 ubiquitin 44.9 19 0.00041 36.2 3.0 43 72-114 146-195 (384)
366 cd03567 VHS_GGA VHS domain fam 43.9 1.8E+02 0.0038 24.7 8.3 73 247-325 38-115 (139)
367 PF09986 DUF2225: Uncharacteri 43.3 14 0.00029 34.0 1.6 49 71-120 4-59 (214)
368 smart00638 LPD_N Lipoprotein N 43.1 4.3E+02 0.0092 27.9 17.2 145 247-414 357-513 (574)
369 PF00790 VHS: VHS domain; Int 42.9 1.6E+02 0.0034 24.8 8.0 73 247-325 42-117 (140)
370 PF12906 RINGv: RING-variant d 42.9 12 0.00027 25.2 0.9 30 85-115 13-47 (47)
371 PF05883 Baculo_RING: Baculovi 42.6 19 0.0004 30.3 2.1 44 72-118 26-78 (134)
372 PF06012 DUF908: Domain of Unk 42.5 1.3E+02 0.0029 29.4 8.5 80 221-303 239-324 (329)
373 COG3813 Uncharacterized protei 42.4 27 0.00059 25.8 2.6 35 91-131 28-62 (84)
374 PLN02436 cellulose synthase A 42.4 19 0.00042 40.5 2.7 46 73-120 37-89 (1094)
375 PF07800 DUF1644: Protein of u 42.3 10 0.00022 32.7 0.5 20 71-90 1-20 (162)
376 PF03130 HEAT_PBS: PBS lyase H 42.3 27 0.00059 20.3 2.3 26 313-348 1-26 (27)
377 PF10363 DUF2435: Protein of u 42.1 1.1E+02 0.0024 23.8 6.4 69 250-328 6-74 (92)
378 smart00288 VHS Domain present 42.1 1.1E+02 0.0024 25.5 6.9 72 295-368 37-111 (133)
379 KOG0301 Phospholipase A2-activ 41.3 4.9E+02 0.011 28.1 13.3 157 221-393 561-728 (745)
380 COG5116 RPN2 26S proteasome re 40.8 1E+02 0.0022 32.5 7.4 63 248-324 586-648 (926)
381 PF13251 DUF4042: Domain of un 40.8 2.6E+02 0.0057 24.9 11.6 70 249-328 103-176 (182)
382 PF00096 zf-C2H2: Zinc finger, 40.4 7.2 0.00016 21.5 -0.5 13 73-85 1-13 (23)
383 PLN02915 cellulose synthase A 39.9 22 0.00048 39.9 2.7 46 73-120 16-68 (1044)
384 KOG2032 Uncharacterized conser 39.8 2.9E+02 0.0063 28.6 10.3 111 295-411 254-372 (533)
385 PF14500 MMS19_N: Dos2-interac 39.4 1.5E+02 0.0033 28.0 8.0 103 311-414 96-241 (262)
386 PRK01343 zinc-binding protein; 39.3 28 0.0006 24.7 2.2 40 72-114 9-48 (57)
387 PRK14707 hypothetical protein; 39.2 8.8E+02 0.019 30.4 19.7 159 221-393 307-469 (2710)
388 PF10915 DUF2709: Protein of u 38.6 28 0.00061 30.9 2.7 36 72-118 87-122 (238)
389 KOG2062 26S proteasome regulat 38.5 96 0.0021 33.7 6.9 86 265-367 567-652 (929)
390 COG5656 SXM1 Importin, protein 38.1 4.6E+02 0.0099 28.9 11.7 140 247-394 408-551 (970)
391 KOG3665 ZYG-1-like serine/thre 38.1 1.3E+02 0.0027 33.0 8.1 93 320-413 494-590 (699)
392 smart00132 LIM Zinc-binding do 38.0 27 0.00059 21.5 2.0 35 74-119 1-37 (39)
393 PRK14707 hypothetical protein; 37.9 9.1E+02 0.02 30.3 19.1 236 154-406 199-441 (2710)
394 cd03567 VHS_GGA VHS domain fam 37.6 1.3E+02 0.0029 25.5 6.6 71 338-410 38-116 (139)
395 KOG2137 Protein kinase [Signal 37.1 1.1E+02 0.0025 32.9 7.3 132 200-350 389-520 (700)
396 PF14663 RasGEF_N_2: Rapamycin 37.1 2.3E+02 0.0049 23.0 8.5 82 296-391 9-90 (115)
397 KOG4464 Signaling protein RIC- 37.0 4.7E+02 0.01 26.6 14.3 59 316-374 334-408 (532)
398 PF08216 CTNNBL: Catenin-beta- 37.0 43 0.00093 27.1 3.3 36 221-258 63-98 (108)
399 KOG1943 Beta-tubulin folding c 36.9 7E+02 0.015 28.6 13.9 155 247-414 341-504 (1133)
400 PF08216 CTNNBL: Catenin-beta- 36.5 57 0.0012 26.4 3.9 38 313-350 62-99 (108)
401 COG5116 RPN2 26S proteasome re 35.6 1E+02 0.0022 32.5 6.4 61 294-364 550-611 (926)
402 PF10521 DUF2454: Protein of u 35.1 2.7E+02 0.0059 26.5 9.2 71 247-325 119-202 (282)
403 PF13894 zf-C2H2_4: C2H2-type 34.9 12 0.00027 20.3 -0.1 13 73-85 1-13 (24)
404 KOG2272 Focal adhesion protein 33.5 21 0.00046 33.1 1.2 50 68-119 179-231 (332)
405 PF13251 DUF4042: Domain of un 33.3 3.5E+02 0.0076 24.1 9.7 71 296-370 102-176 (182)
406 PF06844 DUF1244: Protein of u 33.1 27 0.00059 25.4 1.4 12 94-105 12-23 (68)
407 TIGR02300 FYDLN_acid conserved 33.0 31 0.00067 28.7 1.9 11 109-119 26-36 (129)
408 PF14500 MMS19_N: Dos2-interac 33.0 4.3E+02 0.0092 25.0 18.4 142 171-326 12-153 (262)
409 KOG3899 Uncharacterized conser 32.8 27 0.00058 33.2 1.7 29 93-121 328-366 (381)
410 PF04499 SAPS: SIT4 phosphatas 32.4 4E+02 0.0086 27.7 10.4 82 330-412 54-150 (475)
411 PF08389 Xpo1: Exportin 1-like 32.0 2.1E+02 0.0046 23.5 7.2 65 295-363 82-148 (148)
412 smart00834 CxxC_CXXC_SSSS Puta 31.7 31 0.00066 22.0 1.4 11 109-119 26-36 (41)
413 KOG0883 Cyclophilin type, U bo 31.5 25 0.00054 34.8 1.3 70 69-140 98-175 (518)
414 PF09538 FYDLN_acid: Protein o 30.8 43 0.00093 27.1 2.4 13 109-121 26-38 (108)
415 PLN02400 cellulose synthase 30.5 28 0.00061 39.3 1.7 46 73-120 37-89 (1085)
416 PF07923 N1221: N1221-like pro 29.8 1.2E+02 0.0026 29.2 5.8 54 294-349 59-127 (293)
417 PRK04023 DNA polymerase II lar 29.8 56 0.0012 36.6 3.7 42 73-121 627-675 (1121)
418 KOG2956 CLIP-associating prote 29.7 6.5E+02 0.014 26.1 16.5 184 161-368 287-477 (516)
419 PF14569 zf-UDP: Zinc-binding 28.9 48 0.001 25.0 2.2 47 73-121 10-63 (80)
420 smart00734 ZnF_Rad18 Rad18-lik 28.5 28 0.0006 20.3 0.7 9 74-82 3-11 (26)
421 PF12783 Sec7_N: Guanine nucle 28.2 3.1E+02 0.0067 23.6 7.7 86 330-422 65-154 (168)
422 PF14663 RasGEF_N_2: Rapamycin 28.2 1.3E+02 0.0029 24.4 5.0 39 339-378 9-47 (115)
423 KOG2593 Transcription initiati 28.1 1.9E+02 0.004 29.4 6.7 53 66-130 122-174 (436)
424 KOG2462 C2H2-type Zn-finger pr 28.1 19 0.00041 34.0 -0.1 52 70-121 159-227 (279)
425 PF12171 zf-C2H2_jaz: Zinc-fin 27.9 30 0.00064 20.0 0.8 15 73-87 2-16 (27)
426 PF06676 DUF1178: Protein of u 27.6 22 0.00047 30.6 0.2 26 89-119 9-42 (148)
427 KOG3970 Predicted E3 ubiquitin 27.6 1.5E+02 0.0032 27.2 5.4 53 74-126 52-111 (299)
428 KOG1078 Vesicle coat complex C 27.4 8.6E+02 0.019 26.9 11.7 135 162-324 396-530 (865)
429 PF12874 zf-met: Zinc-finger o 27.2 16 0.00035 20.5 -0.5 14 73-86 1-14 (25)
430 PF12765 Cohesin_HEAT: HEAT re 26.5 1.3E+02 0.0027 19.7 3.7 26 294-321 17-42 (42)
431 PF09889 DUF2116: Uncharacteri 26.3 77 0.0017 22.6 2.8 13 109-121 3-15 (59)
432 KOG3214 Uncharacterized Zn rib 26.2 21 0.00046 28.1 -0.1 42 67-121 18-59 (109)
433 PF00790 VHS: VHS domain; Int 26.0 1.4E+02 0.003 25.1 4.9 72 295-368 42-118 (140)
434 KOG1815 Predicted E3 ubiquitin 25.9 46 0.001 34.1 2.3 36 70-105 68-104 (444)
435 COG5183 SSM4 Protein involved 25.6 68 0.0015 35.0 3.4 49 71-120 11-66 (1175)
436 TIGR03847 conserved hypothetic 25.5 55 0.0012 28.7 2.3 14 108-121 155-168 (177)
437 PF09162 Tap-RNA_bind: Tap, RN 25.2 47 0.001 25.8 1.6 28 86-118 10-37 (88)
438 PF12463 DUF3689: Protein of u 25.0 6.4E+02 0.014 24.5 10.4 78 293-370 93-175 (303)
439 TIGR00155 pqiA_fam integral me 24.9 1.2E+02 0.0026 30.7 5.0 37 68-121 8-45 (403)
440 PRK05978 hypothetical protein; 24.4 43 0.00094 28.7 1.4 12 110-121 53-64 (148)
441 KOG2169 Zn-finger transcriptio 24.2 71 0.0015 34.4 3.4 69 66-136 300-371 (636)
442 KOG3579 Predicted E3 ubiquitin 24.1 32 0.00069 32.6 0.6 44 71-114 267-316 (352)
443 KOG0211 Protein phosphatase 2A 24.1 8.2E+02 0.018 27.1 11.3 182 160-366 236-425 (759)
444 PF14205 Cys_rich_KTR: Cystein 24.1 29 0.00062 24.2 0.2 15 71-85 3-17 (55)
445 PF04388 Hamartin: Hamartin pr 23.9 7.4E+02 0.016 27.0 11.0 59 310-368 81-140 (668)
446 PF14666 RICTOR_M: Rapamycin-i 23.8 5.8E+02 0.013 23.5 11.4 83 316-409 142-224 (226)
447 COG1885 Uncharacterized protei 23.7 26 0.00057 27.8 -0.0 23 108-131 48-70 (115)
448 PF11864 DUF3384: Domain of un 23.6 8.1E+02 0.018 25.2 14.0 133 247-397 176-317 (464)
449 PF13824 zf-Mss51: Zinc-finger 23.5 71 0.0015 22.5 2.1 12 109-120 14-25 (55)
450 PRK13908 putative recombinatio 23.5 2.7E+02 0.0059 25.1 6.2 63 39-105 109-182 (204)
451 PF11290 DUF3090: Protein of u 23.4 51 0.0011 28.9 1.7 14 108-121 153-166 (171)
452 COG3809 Uncharacterized protei 23.3 15 0.00033 27.6 -1.3 11 73-83 2-12 (88)
453 COG1655 Uncharacterized protei 23.1 17 0.00036 33.4 -1.4 46 70-116 17-69 (267)
454 TIGR01206 lysW lysine biosynth 23.1 35 0.00076 23.9 0.5 32 72-120 2-33 (54)
455 PF06012 DUF908: Domain of Unk 22.9 2.2E+02 0.0048 27.8 6.3 63 316-378 241-307 (329)
456 PF06906 DUF1272: Protein of u 22.9 92 0.002 21.9 2.5 25 92-121 29-53 (57)
457 KOG3799 Rab3 effector RIM1 and 22.6 2.9E+02 0.0064 23.2 5.8 34 67-105 60-94 (169)
458 PF05502 Dynactin_p62: Dynacti 22.6 39 0.00085 35.1 1.0 52 70-121 3-64 (483)
459 PF08506 Cse1: Cse1; InterPro 22.4 7.9E+02 0.017 24.5 10.8 51 265-321 320-370 (370)
460 KOG0915 Uncharacterized conser 21.7 1.5E+03 0.032 27.4 16.0 220 173-412 1198-1429(1702)
461 PF04064 DUF384: Domain of unk 21.7 1.7E+02 0.0036 20.8 3.8 45 320-364 1-45 (58)
462 PF00412 LIM: LIM domain; Int 21.6 80 0.0017 21.6 2.2 32 70-101 24-56 (58)
463 PHA02768 hypothetical protein; 21.3 1.2E+02 0.0026 21.3 2.9 37 73-120 6-42 (55)
464 COG1773 Rubredoxin [Energy pro 21.2 49 0.0011 23.3 0.9 13 68-80 32-44 (55)
465 PF10497 zf-4CXXC_R1: Zinc-fin 20.7 94 0.002 25.0 2.6 45 73-117 8-69 (105)
466 cd01408 SIRT1 SIRT1: Eukaryoti 20.7 1.1E+02 0.0024 28.4 3.5 31 90-121 122-152 (235)
467 PF14225 MOR2-PAG1_C: Cell mor 20.7 7.2E+02 0.016 23.5 13.5 66 247-325 188-253 (262)
468 PRK00420 hypothetical protein; 20.6 38 0.00082 27.6 0.3 12 109-120 40-51 (112)
469 PF12530 DUF3730: Protein of u 20.6 6.7E+02 0.015 23.0 18.9 131 171-325 14-150 (234)
470 PF12660 zf-TFIIIC: Putative z 20.6 34 0.00074 27.2 0.1 45 74-119 16-65 (99)
471 PF10274 ParcG: Parkin co-regu 20.5 6.2E+02 0.013 22.6 10.6 74 295-371 38-112 (183)
472 PRK00464 nrdR transcriptional 20.4 54 0.0012 28.4 1.3 37 73-121 1-40 (154)
473 KOG4337 Microsomal triglycerid 20.3 1E+03 0.022 25.9 10.4 40 244-288 356-395 (896)
474 PF04423 Rad50_zn_hook: Rad50 20.1 31 0.00067 23.9 -0.2 11 111-121 22-32 (54)
475 PRK03922 hypothetical protein; 20.1 35 0.00076 27.5 0.0 20 109-129 49-68 (113)
476 KOG4185 Predicted E3 ubiquitin 20.0 67 0.0014 30.8 2.0 44 73-118 208-265 (296)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=7.8e-24 Score=238.36 Aligned_cols=245 Identities=16% Similarity=0.159 Sum_probs=206.0
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.++++.|+..|++ ...+..|++.|++++.++++++..|+++|+||.|+++|.+++.. .+++|+++|.|++.+++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~----iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQK----AKEDSATVLWNLCCHSE 520 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH----HHHHHHHHHHHHhCCcH
Confidence 3568889988854 57889999999999999999999999999999999999877543 49999999999999887
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc------------------------------
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS------------------------------ 286 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~------------------------------ 286 (425)
+.+.++... |+++.|+.+|++ ++.+.+..|+++|.+|+...++
T Consensus 521 qir~iV~~a-GAIppLV~LL~s------gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 521 DIRACVESA-GAVPALLWLLKN------GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHHHHHHHC-CCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 778877643 899999999987 7888888888888888532111
Q ss_pred -------------------------------------------------hhHhhcchhHHHHHHHHhccccCChHHHHHH
Q 041408 287 -------------------------------------------------KFLQRLKPQIFQNIIRVLKQRVIAQQGINAA 317 (425)
Q Consensus 287 -------------------------------------------------~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A 317 (425)
........|+||+|+.+|+++ +.+.++.|
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keA 671 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQS 671 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHH
Confidence 011122346778888888777 77888899
Q ss_pred HHHHHHhCCC--CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCCh
Q 041408 318 LKLMLDACPS--GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSP 395 (425)
Q Consensus 318 ~~aL~~L~~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~ 395 (425)
+++|.+|..+ .+++..++++|+||+|+++|.+. +..+++.|+.+|.+++..++++.++.. .|+++.|+++|..+++
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~~~ei~~-~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDPEVAAEALA-EDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchHHHHHHh-cCcHHHHHHHHHhCCh
Confidence 9999999963 35678889999999999999886 889999999999999999999999976 6789999999999999
Q ss_pred HHHHHHHHHHHHHhccCCChHHHH
Q 041408 396 AADDRAILILSLICKFSGNFNFVV 419 (425)
Q Consensus 396 ~~~e~a~~~L~~l~~~~~~~~~~v 419 (425)
+.+++|+++|..||++.+. .+++
T Consensus 750 ~~k~~Aa~AL~~L~~~~~~-~~~~ 772 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFPV-DDVL 772 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCh-hHHH
Confidence 9999999999999999886 4544
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=9.8e-24 Score=237.54 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=211.7
Q ss_pred HHHHHHHHHHhc----ChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 159 KLQIIKLIKDIW----KPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 159 ~~~i~~lv~~l~----s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
...+..++.++. +++.+..|+..|+.+++++++||.++.+ .|+||.|+.+|.+++. .+++.|+.+|.+|+.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~----~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL----GAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCH----HHHHHHHHHHHHHhc
Confidence 566788888884 3488999999999999999999999997 8999999999987654 348999999999999
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc---cchhHhhcchhHHHHHHHHhccccC-
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA---SSKFLQRLKPQIFQNIIRVLKQRVI- 309 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~---~~~~~~~~~~g~i~~Lv~lL~~~~~- 309 (425)
++++...++.. |+|+.|+.+|++ ++.+.|++|+++|++|+..+ .++..++...|+||+|+.+|++++.
T Consensus 88 ~e~nk~~Iv~~--GaIppLV~LL~s------Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 88 EEDLRVKVLLG--GCIPPLLSLLKS------GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred CHHHHHHHHHc--CChHHHHHHHHC------CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 87766666653 999999999998 89999999999999999874 3455667778999999999998721
Q ss_pred ChHHHHHHHHHHHHhCCCCCchH-HHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-HhhHHHHhhccccHHHHH
Q 041408 310 AQQGINAALKLMLDACPSGRNRM-IMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADGRAQFLSHRAAIAVVT 387 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L~~~~~n~~-~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv 387 (425)
+...++.|+.+|+|||.+.+|+. .++++|+||.|+++|.++ ++..++.|+.+|.+++.. ++++..+++ .|+||.|+
T Consensus 160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV 237 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLL 237 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHH
Confidence 12245677899999999988875 458999999999999886 889999999999999874 678888876 78899999
Q ss_pred HHHhcCC-hHHHHHHHHHHHHHhccCCChHHHHHHhh
Q 041408 388 KRIMQVS-PAADDRAILILSLICKFSGNFNFVVQEMS 423 (425)
Q Consensus 388 ~ll~~~s-~~~~e~a~~~L~~l~~~~~~~~~~v~e~~ 423 (425)
++|..++ ...|+.|+++|++||.++.+.++.|.+..
T Consensus 238 ~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aG 274 (2102)
T PLN03200 238 KLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAG 274 (2102)
T ss_pred HHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 9887664 58899999999999998777677776653
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-21 Score=194.74 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=216.1
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCC-HHHHHHHHHH-h--cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhh
Q 041408 136 QAWCADNSAYGIDRIPTPKAPLS-KLQIIKLIKD-I--WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVN 211 (425)
Q Consensus 136 ~~~~~~n~~~~~~~~p~~~~~~~-~~~i~~lv~~-l--~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s 211 (425)
-.|...|.|++ +.|.|+++ ...+.+.+.. + .+.++..+|+|+|.+++++..+....++++|++|.|+.+|.+
T Consensus 215 ~tW~LsNlcrg----k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~ 290 (514)
T KOG0166|consen 215 ATWTLSNLCRG----KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH 290 (514)
T ss_pred HHHHHHHHHcC----CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC
Confidence 45888898876 44666654 3344444444 4 456888999999999999999999999999999999999987
Q ss_pred cccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhh
Q 041408 212 CCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQR 291 (425)
Q Consensus 212 ~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 291 (425)
.... ++..|+++++|++.+++.+...+... |+++.|..+|.+ ......+++|+|+|.|++.++...++.+
T Consensus 291 ~~~~----v~~PaLRaiGNIvtG~d~QTq~vi~~-~~L~~l~~ll~~-----s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 291 SSPK----VVTPALRAIGNIVTGSDEQTQVVINS-GALPVLSNLLSS-----SPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred CCcc----cccHHHhhccceeeccHHHHHHHHhc-ChHHHHHHHhcc-----CcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 7644 38999999999999999988887754 999999999995 2555688999999999999999888888
Q ss_pred cchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 292 LKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 292 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
.++|++|.|+.+|+.+ +.+.|+.|+||+.|++.+. +....+++.|+|++|.++|... |..+...++.+|.+|-..
T Consensus 361 ida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 361 IDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKV 437 (514)
T ss_pred HHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHH
Confidence 8899999999999999 8999999999999999854 5778889999999999999654 888899999999999875
Q ss_pred HhhHH--------HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 370 ADGRA--------QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 370 ~e~r~--------~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
++... ..++..||+..+-.+-.+.+....+.|..++.......
T Consensus 438 ~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 438 GEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 54333 45788899977777545557788899999998877654
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.8e-21 Score=189.49 Aligned_cols=247 Identities=14% Similarity=0.137 Sum_probs=208.3
Q ss_pred HHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 160 LQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 160 ~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
+-++.+|..++ ++..+.+|+|+|.+++.++.+.-+.++++|++|.++.+|.+++.. +++.|+++|+|++.+.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~----v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD----VREQAVWALGNIAGDSP 184 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH----HHHHHHHHHhccccCCh
Confidence 45677777773 368899999999999999999999999999999999999988764 49999999999999999
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
.++..+... |+++.|..++.. +.......++.|+|.|||.+.........-..++|.|..+|.+. |+.+...
T Consensus 185 ~~Rd~vl~~-g~l~pLl~~l~~-----~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~D 256 (514)
T KOG0166|consen 185 DCRDYVLSC-GALDPLLRLLNK-----SDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTD 256 (514)
T ss_pred HHHHHHHhh-cchHHHHHHhcc-----ccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 999998874 999999999986 23347889999999999998754433333347899999999998 9999999
Q ss_pred HHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-C
Q 041408 317 ALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-S 394 (425)
Q Consensus 317 A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s 394 (425)
|+|||..|+..+ +....++++|++|.||++|... +..++..|+.++.|++...+.+.+.+-..|++|.|..++... .
T Consensus 257 a~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~ 335 (514)
T KOG0166|consen 257 ACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK 335 (514)
T ss_pred HHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence 999999999755 5666778999999999999875 777888999999999998888888877789999999966633 4
Q ss_pred hHHHHHHHHHHHHHhccCCChHHHH
Q 041408 395 PAADDRAILILSLICKFSGNFNFVV 419 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~~~~~v 419 (425)
...++.|++++.+++.+....-+.|
T Consensus 336 ~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 336 ESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred hhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4578899999999999755433333
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-21 Score=181.58 Aligned_cols=248 Identities=11% Similarity=0.064 Sum_probs=211.2
Q ss_pred HHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
-.++.+|+.++.++ +.|+.++.++.+++.. +.||..+...|++..++++-++.+. .++.+|..+|.+++...+
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdi----rvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDI----RVQRNATGALLNMTHSRE 199 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchh----hHHHHHHHHHHHhhhhhh
Confidence 46777888777443 7788999999999865 8899999999999999996555543 459999999999998888
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc-hhHHHHHHHHhccccCChHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK-PQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+.+.++.. |++|.||.++++ +++.+|..+..++.+++....+++..+.. +.++|.||+++.++ +++++-
T Consensus 200 nRr~LV~a--G~lpvLVsll~s------~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~--s~kvkc 269 (550)
T KOG4224|consen 200 NRRVLVHA--GGLPVLVSLLKS------GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG--SDKVKC 269 (550)
T ss_pred hhhhhhcc--CCchhhhhhhcc------CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC--ChHHHH
Confidence 87777764 999999999998 99999999999999999988888776643 34999999999999 999999
Q ss_pred HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-C
Q 041408 316 AALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-S 394 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s 394 (425)
.|.-+|.||++..+.+..++++|.+|.+|++|++. .....-..+..+.|++-.+-+-..+++ .|.+.+||++|..+ +
T Consensus 270 qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 270 QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDN 347 (550)
T ss_pred HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCc
Confidence 99999999999999999999999999999999875 556666778889999988766666654 88999999988776 5
Q ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHhh
Q 041408 395 PAADDRAILILSLICKFSGNFNFVVQEMS 423 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~~~~~v~e~~ 423 (425)
.+.|-+|+++||+|+..+....+++.|+.
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esg 376 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESG 376 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcC
Confidence 56899999999999996665577887764
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.9e-20 Score=173.89 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=206.8
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+++.++...-+ +...|..++.+|.+++ ++.+||+.++.+|++|.|++++++++.+. +..+..++.+++.+..
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dv----qyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDV----QYYCTTAISNIAVDRR 240 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhH----HHHHHHHhhhhhhhHH
Confidence 345666665333 3467888999999997 57899999999999999999999887654 9999999999998776
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
..+.++...+..|+.||.+... +++.++-.|.-+|.++++..+....+.. +|.+|.++++|+++ .....-+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~------~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~--~~plila 311 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDD------GSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSP--MGPLILA 311 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhC------CChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCc--chhHHHH
Confidence 6555555444599999999997 8999999999999999998887776654 58899999999987 7778888
Q ss_pred HHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-HhhHHHHhhccccHHHHHHHHhcCCh
Q 041408 317 ALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADGRAQFLSHRAAIAVVTKRIMQVSP 395 (425)
Q Consensus 317 A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv~ll~~~s~ 395 (425)
...+++|++.++-|-..++++|.+.|||.+|.-+++.+++-.|..+|++|+.. ..++..+++ .|+||.+.++++.++-
T Consensus 312 sVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pv 390 (550)
T KOG4224|consen 312 SVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPV 390 (550)
T ss_pred HHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCCh
Confidence 89999999999999999999999999999999885677999999999999984 446666655 7899999999999988
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHH
Q 041408 396 AADDRAILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 396 ~~~e~a~~~L~~l~~~~~~~~~~v~ 420 (425)
..|+.--.++..|+-+... +..+-
T Consensus 391 svqseisac~a~Lal~d~~-k~~ll 414 (550)
T KOG4224|consen 391 SVQSEISACIAQLALNDND-KEALL 414 (550)
T ss_pred hHHHHHHHHHHHHHhcccc-HHHHh
Confidence 9999888888888877666 54443
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.85 E-value=5.9e-22 Score=149.93 Aligned_cols=73 Identities=47% Similarity=0.936 Sum_probs=63.0
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSA 144 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~~ 144 (425)
+|++|+||||+++|+|||++++||||||.+|++|+..+ ..+||.|+++++. .+++||..|++.|++|+.+|.|
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--GGTDPFTRQPLSE-SDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--SSB-TTT-SB-SG-GGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--CCCCCCCCCcCCc-ccceECHHHHHHHHHHHHHccC
Confidence 69999999999999999999999999999999999985 4899999999987 8999999999999999998864
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=3e-20 Score=173.30 Aligned_cols=258 Identities=14% Similarity=0.192 Sum_probs=214.5
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCC-HHHHHHHHHHh---cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhh
Q 041408 136 QAWCADNSAYGIDRIPTPKAPLS-KLQIIKLIKDI---WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVN 211 (425)
Q Consensus 136 ~~~~~~n~~~~~~~~p~~~~~~~-~~~i~~lv~~l---~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s 211 (425)
..|...|.++| ..|.|.-. .....+.+..| .+++...+|+|++.+++.+..+...++.+.|.-+.|+.+|.+
T Consensus 221 ~TWtLSNlcRG----knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 221 ATWTLSNLCRG----KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred hHHHHHHhhCC----CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC
Confidence 35888888876 33333321 33444555554 578999999999999999988889999999999999999988
Q ss_pred cccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhh
Q 041408 212 CCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQR 291 (425)
Q Consensus 212 ~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 291 (425)
.+..+ +..|++.++|+..+++.+..++.. .|+++.+-.+|++ .....|++|+|++.|+..++....+.+
T Consensus 297 ~sa~i----qtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~------~ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 297 ESAKI----QTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSS------PKENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred ccccc----cCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcC------hhhhhhhhhheeecccccCCHHHHHHH
Confidence 76544 999999999999988888777775 4999999999997 666899999999999999999999989
Q ss_pred cchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC----CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHh
Q 041408 292 LKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG----RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLC 367 (425)
Q Consensus 292 ~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~----~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~ 367 (425)
++.+++|+|+++|... +...++.|+||+.|..++. +..+.+++.|+|.+|-++|... +.++.+.++.++.++.
T Consensus 366 id~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~eniL 442 (526)
T COG5064 366 IDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIENIL 442 (526)
T ss_pred HhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHHHHH
Confidence 9999999999999988 8999999999999998754 4567788999999999999875 7789999999999998
Q ss_pred CCHh-----------hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 368 SCAD-----------GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 368 ~~~e-----------~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
..++ ....+++.+||+..+-.+-.+++....+.|-+++......
T Consensus 443 k~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 443 KVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred hhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 6543 2355677789988888866666778889999999887665
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.82 E-value=8.1e-20 Score=170.43 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=220.1
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhh
Q 041408 134 LIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVN 211 (425)
Q Consensus 134 ~I~~~~~~n~~~~~~~~p~~~~~~~~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s 211 (425)
.=..|...|..+| +....+..++.+.++.+++.|+++ +++.+++|+|.+++.+++..|..+.+.|++..++.+|.+
T Consensus 133 fEAaWalTNiaSG--tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s 210 (526)
T COG5064 133 FEAAWALTNIASG--TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210 (526)
T ss_pred HHHHHHHhhhccC--cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence 3345877777655 223344456677788888888664 788999999999999999999999999999999999986
Q ss_pred cccCCCcccHHHHHHHHHhcCCChHHH--HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH
Q 041408 212 CCDKNQVGGLEGALSILHFFKITSEYM--KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL 289 (425)
Q Consensus 212 ~~~~~~~~~~~~Al~~L~~L~~~~~~~--~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 289 (425)
..... ....++.|.|.||+.+..-. ...+. .++|.|.+++.+ .++++...|+|++.+|+.+...+..
T Consensus 211 s~~~i--smlRn~TWtLSNlcRGknP~P~w~~is---qalpiL~KLiys------~D~evlvDA~WAiSYlsDg~~E~i~ 279 (526)
T COG5064 211 SAIHI--SMLRNATWTLSNLCRGKNPPPDWSNIS---QALPILAKLIYS------RDPEVLVDACWAISYLSDGPNEKIQ 279 (526)
T ss_pred ccchH--HHHHHhHHHHHHhhCCCCCCCchHHHH---HHHHHHHHHHhh------cCHHHHHHHHHHHHHhccCcHHHHH
Confidence 65433 34889999999999754211 22233 589999999998 8999999999999999999999999
Q ss_pred hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 290 QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 290 ~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++.+.|+.+.|+.+|.+. +...+.-|++.+.|+.. ++.....+++.|+++++-.+|.+. ...++..|++++.|+..
T Consensus 280 avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITA 356 (526)
T COG5064 280 AVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITA 356 (526)
T ss_pred HHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeeccccc
Confidence 999999999999999998 88899999999999987 456777889999999999999875 66888999999999987
Q ss_pred C-HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHH
Q 041408 369 C-ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVV 419 (425)
Q Consensus 369 ~-~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v 419 (425)
. .+..+++++ ...+|+|+.+|.....+.++.|.+++.+...++.+-..++
T Consensus 357 Gnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 357 GNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred CCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 4 455555555 6779999998877677899999999999998877643443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.70 E-value=1.5e-15 Score=159.53 Aligned_cols=220 Identities=17% Similarity=0.198 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHH
Q 041408 176 TKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWV 255 (425)
Q Consensus 176 ~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~l 255 (425)
..++..|.+++ ++..+...|.+.|+|+.|+++|.+.+. +....+++.|.+|+...++...+... |+|+.|+++
T Consensus 267 rv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~----ellil~v~fLkkLSi~~ENK~~m~~~--giV~kL~kL 339 (708)
T PF05804_consen 267 RVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENE----ELLILAVTFLKKLSIFKENKDEMAES--GIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHH
Confidence 44556678887 567888889999999999999987653 34788999999999988876666553 999999999
Q ss_pred HccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHH
Q 041408 256 LALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMV 335 (425)
Q Consensus 256 L~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv 335 (425)
+.+ ++.+.+..+..+|+||+...+.+..++ +.|++|.|+.+|.++ ..+..++.+|++||..+++|..+.
T Consensus 340 l~s------~~~~l~~~aLrlL~NLSfd~~~R~~mV-~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 340 LPS------ENEDLVNVALRLLFNLSFDPELRSQMV-SLGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred hcC------CCHHHHHHHHHHHHHhCcCHHHHHHHH-HCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHh
Confidence 998 888999999999999999988877655 469999999999865 466779999999999999999999
Q ss_pred hhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCCh
Q 041408 336 ESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 336 ~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
..++||.++++|.++++..+...+++++.||+....+.+.+++ ++|++.|++...+.... ..+.++++++.|.+..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchH
Confidence 9999999999998875666677788999999999988887765 78899999977765432 3678999999998553
Q ss_pred HH
Q 041408 416 NF 417 (425)
Q Consensus 416 ~~ 417 (425)
+.
T Consensus 485 k~ 486 (708)
T PF05804_consen 485 KE 486 (708)
T ss_pred HH
Confidence 33
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.69 E-value=3.5e-17 Score=120.60 Aligned_cols=63 Identities=52% Similarity=0.945 Sum_probs=59.3
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAW 138 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~ 138 (425)
+|.||||+++|+|||+++|||+|||.||.+|+..+ .+||.|+++++. .++++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~---~~cP~~~~~~~~-~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH---GTDPVTGQPLTH-EDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC---CCCCCCcCCCCh-hhceeCHHHHHHHHhC
Confidence 58899999999999999999999999999999873 689999999987 8999999999999987
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.57 E-value=8.4e-14 Score=146.40 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNI 300 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 300 (425)
...++.+|.||+.+.....+++.. |+|+.|+.+|.+ ++.+....++.+|.+|+...+++..++. .|+|+.|
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~--~iV~~Lv~~Ldr------~n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL 336 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNK--GIVSLLVKCLDR------ENEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhc--CCHHHHHHHHcC------CCHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHH
Confidence 567788999999888777666654 999999999998 8999999999999999999999888765 4999999
Q ss_pred HHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhcc
Q 041408 301 IRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHR 380 (425)
Q Consensus 301 v~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~ 380 (425)
++++..+ +...+..++++|+|||.++++|..|++.|+||.|+.+|.+ +.....++.+|.+|+...++|..+.. .
T Consensus 337 ~kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~-T 410 (708)
T PF05804_consen 337 LKLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAY-T 410 (708)
T ss_pred HHHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhh-c
Confidence 9999988 8999999999999999999999999999999999999964 34667899999999999999998855 5
Q ss_pred ccHHHHHHHHhcCCh-HHHHHHHHHHHHHhccCCC
Q 041408 381 AAIAVVTKRIMQVSP-AADDRAILILSLICKFSGN 414 (425)
Q Consensus 381 g~i~~Lv~ll~~~s~-~~~e~a~~~L~~l~~~~~~ 414 (425)
+++|.+++++..++. ..+..+++++.+||.+..+
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn 445 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRN 445 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence 689999998888744 5566788999999998655
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.1e-12 Score=122.84 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHh----cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 158 SKLQIIKLIKDI----WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 158 ~~~~i~~lv~~l----~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
+..+..-++..| ++.+.....+..++.-+-.++.||..+.+.|+.|.+...|...... ....++.+++..|..
T Consensus 143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~---~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT---RTVRELYDAIRALLT 219 (461)
T ss_pred ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc---HHHHHHHHHHHHhcC
Confidence 334444444444 3346677788888888888999999999999999999888654432 347778888888887
Q ss_pred ChH---------HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh
Q 041408 234 TSE---------YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL 304 (425)
Q Consensus 234 ~~~---------~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL 304 (425)
+++ +..+.++.. |++..|+..|+. .-++.....+..+|..|+..++.++.++.. |++..|++++
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A-----~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~-GGl~tl~~~i 292 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKE-GILTALTEALQA-----GIDPDSLVSLSTTLKALAVRDEICKSIAES-GGLDTLLRCI 292 (461)
T ss_pred CCceeeecchhhHHHHHHHHh-hhHHHHHHHHHc-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHH
Confidence 766 233333332 788899999997 366888999999999999999988887765 7899999999
Q ss_pred ccccCCh---HHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc-CCcchHHHHHHHHHHHhC-CHhhHHHHhhc
Q 041408 305 KQRVIAQ---QGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA-SEKKTTELILGILFHLCS-CADGRAQFLSH 379 (425)
Q Consensus 305 ~~~~~~~---~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~ 379 (425)
.+. ... ..-+.++..|+.|+.+++++..+|+.|+.+.++.++... +++.+.+.++.++..||. .+++-.++++
T Consensus 293 ~d~-n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie- 370 (461)
T KOG4199|consen 293 DDS-NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE- 370 (461)
T ss_pred hhh-chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-
Confidence 874 123 345678888999999999999999999999999999654 368899999999999997 8888888877
Q ss_pred cccHHHHHHHHhcCC--hHHHHHHHHHHHHHhccCCChHHH
Q 041408 380 RAAIAVVTKRIMQVS--PAADDRAILILSLICKFSGNFNFV 418 (425)
Q Consensus 380 ~g~i~~Lv~ll~~~s--~~~~e~a~~~L~~l~~~~~~~~~~ 418 (425)
+|+-...++-|+... ...|.+|...++++..++.+++.+
T Consensus 371 ~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 371 AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 566667788787654 367899999999999998885443
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=1.3e-11 Score=115.68 Aligned_cols=232 Identities=13% Similarity=0.124 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 157 LSKLQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 157 ~~~~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
++.+.+..|+..|. ++..+..++.++.+.+ ..+.++..+.+.|+++.+..+|.+++.. +++.|+.+|.|++.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~----vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPS----VREKALNALNNLSV 83 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChH----HHHHHHHHHHhcCC
Confidence 45677888888773 4678999999999976 5789999999999999999999887653 48999999999998
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
+.++... +. ..++.+.....+. +-+.+.+..+..+|.+|+..++....++ +.++.|+.+|..| +..+
T Consensus 84 ~~en~~~-Ik---~~i~~Vc~~~~s~----~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G--~~~~ 150 (254)
T PF04826_consen 84 NDENQEQ-IK---MYIPQVCEETVSS----PLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSG--SEKT 150 (254)
T ss_pred ChhhHHH-HH---HHHHHHHHHHhcC----CCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcC--ChHH
Confidence 8776554 33 3566666655441 3567888999999999998777655543 5699999999999 9999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH-HHHhhccccHHHHHHHHhc
Q 041408 314 INAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGR-AQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 314 ~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r-~~~~~~~g~i~~Lv~ll~~ 392 (425)
+..++++|.||+.++.+...++.+++++.++.++....+.+....++....||..+-... ..+......-..|. .++.
T Consensus 151 k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~-~~~~ 229 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLF-SLFG 229 (254)
T ss_pred HHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHH-HHHc
Confidence 999999999999999999999999999999999987646778889999999997633222 22222333445666 4655
Q ss_pred CChHHHHHHHHHHHHHhcc
Q 041408 393 VSPAADDRAILILSLICKF 411 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~~~ 411 (425)
++.. .+.-|..|..|
T Consensus 230 e~~~----~~~~l~~l~~h 244 (254)
T PF04826_consen 230 ESSQ----LAKKLQALANH 244 (254)
T ss_pred cHHH----HHHHHHHHHcC
Confidence 4443 33334456666
No 15
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.4e-13 Score=122.08 Aligned_cols=141 Identities=28% Similarity=0.360 Sum_probs=110.9
Q ss_pred cccchhhhhhhhhhhhhHHHH-HHHHHHHHHHHHhhhc-chh-hccCChhHHHHHHHHhhhhcccc--CCCCCCCcccCc
Q 041408 2 SQRIYDYRILLPFCKTNEQNL-LLFLSKLLIKLLLSES-RSR-THKQKPQQQHIIILSLLFQMDDH--QDIEIPEYFICP 76 (425)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~Cp 76 (425)
.+|||+.-.|...|......= .++++....+-|+|+- |+. ....+..+.....++++|.-.+. ...++|+.++|.
T Consensus 136 ~~Ri~Q~~El~~yl~slie~~~~~~~s~~~~N~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~e~rk~rEvpd~lcgk 215 (284)
T KOG4642|consen 136 EKRIRQELELHSYLESLIEGDRERELSEWQENGESDEHLKTMQVPIEQDHDHTTKELSELFSKVDEKRKKREVPDYLCGK 215 (284)
T ss_pred HHHHHHHhhHHHHHHHHhccchhhHHHHHHHcCCChHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 479999999998887654432 2233332333255554 321 22234667777888888865544 578999999999
Q ss_pred CCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCCCC
Q 041408 77 ISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSAY 145 (425)
Q Consensus 77 i~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~~~ 145 (425)
|+.++|+|||++|+|.||+|..|.+++...+ ...|+|+.++.. .+++||.+++..|..|...|.|.
T Consensus 216 It~el~~~pvi~psgIty~ra~I~Ehl~rvg--hfdpvtr~~Lte-~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 216 ITLELMREPVITPSGITYDRADIEEHLQRVG--HFDPVTRWPLTE-YQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred hhHHhhcCCccCccccchhHHHHHHHHHHhc--cCCchhcccCCH-HhhccchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999874 789999999987 99999999999999999999984
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=9.9e-12 Score=133.63 Aligned_cols=241 Identities=15% Similarity=0.068 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCC--------cccHHHHHHHHHhcCCChHHHHhhhhch
Q 041408 174 LQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQ--------VGGLEGALSILHFFKITSEYMKLSAFEI 245 (425)
Q Consensus 174 ~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~--------~~~~~~Al~~L~~L~~~~~~~~~~v~~~ 245 (425)
..+.|++.|-.++ .++++|..|-+.|++..+..||.-.+.... -..+..|..+|-||..++..++..+-..
T Consensus 314 ~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~ 392 (2195)
T KOG2122|consen 314 QLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ 392 (2195)
T ss_pred hhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 3457888887765 578999999999999999998754322110 1347888899999999988777665555
Q ss_pred hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc-ccchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHH
Q 041408 246 DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA-ASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 246 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~ 323 (425)
.|+++.+|..|.+ ...+...--+.+|+||+=. +.+...+....|-+..|+..- ++. .....++.+.||||
T Consensus 393 rgfMeavVAQL~s------~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavLSALWN 464 (2195)
T KOG2122|consen 393 RGFMEAVVAQLIS------APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK--KESTLKAVLSALWN 464 (2195)
T ss_pred hhHHHHHHHHHhc------ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHHHHHhh
Confidence 6999999999997 6667778888999999854 444455555567777777764 444 55678899999999
Q ss_pred hCC-CCCchHHHHh-hCchHHHHHHhhccC---CcchHHHHHHHHHHHhC----CHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 324 ACP-SGRNRMIMVE-SGAVFELIELELTAS---EKKTTELILGILFHLCS----CADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 324 L~~-~~~n~~~iv~-~G~v~~Lv~lL~~~~---~~~~~e~Al~~L~~L~~----~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
|+. +.+|+..|.. -|++..||.+|.=.+ .-.++|.|-++|.|.++ +..+|+-+ .....+..|++.|+..|
T Consensus 465 LSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQIL-R~~NCLq~LLQ~LKS~S 543 (2195)
T KOG2122|consen 465 LSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQIL-RRHNCLQTLLQHLKSHS 543 (2195)
T ss_pred hhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHH-HHhhHHHHHHHHhhhcc
Confidence 998 4689999987 699999999995431 35788999999998875 34455544 44667999999999888
Q ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHhhc
Q 041408 395 PAADDRAILILSLICKFSGNFNFVVQEMSR 424 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~~~~~v~e~~~ 424 (425)
..+--++..+||||+..++.+.+.+.+++.
T Consensus 544 LTiVSNaCGTLWNLSAR~p~DQq~LwD~gA 573 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSPEDQQMLWDDGA 573 (2195)
T ss_pred eEEeecchhhhhhhhcCCHHHHHHHHhccc
Confidence 888889999999999998886666666543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.34 E-value=8.5e-11 Score=110.26 Aligned_cols=201 Identities=14% Similarity=0.080 Sum_probs=162.0
Q ss_pred HhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 196 MAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 196 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
+.+++-+..|+.+|+...+ +..++.|+.++++.+..+. .+.++.+. |+++.+..+|.. .++.++..|++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~d---p~i~e~al~al~n~aaf~~-nq~~Ir~~-Ggi~lI~~lL~~------p~~~vr~~AL~ 76 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTED---PFIQEKALIALGNSAAFPF-NQDIIRDL-GGISLIGSLLND------PNPSVREKALN 76 (254)
T ss_pred CcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhhccChh-HHHHHHHc-CCHHHHHHHcCC------CChHHHHHHHH
Confidence 3567788999999986543 2459999999999887664 45666654 999999999997 89999999999
Q ss_pred HHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcch
Q 041408 276 ILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKT 355 (425)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~ 355 (425)
+|.|++...++...+- ..++.+.+...+.+.+...+.+++++|.||+..++++..+. +.+|.++.+|.++ +..+
T Consensus 77 aL~Nls~~~en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-~~~~ 150 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-SEKT 150 (254)
T ss_pred HHHhcCCChhhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC-ChHH
Confidence 9999999888877653 35777777665543467899999999999998888877775 4799999999987 8899
Q ss_pred HHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccCCC
Q 041408 356 TELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 356 ~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..++.+|.+|+.++.....++. ..++..++.++... +...-..++....+|..+-..
T Consensus 151 k~~vLk~L~nLS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHHHHHhccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 99999999999999998887877 45789999855543 456677888888888765443
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.32 E-value=9.7e-13 Score=87.83 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=32.3
Q ss_pred CcCCccCCCCceecCCCccccHHHHHHHHHcCCCC-CCCCCC
Q 041408 75 CPISLQIMKDPVTAITGITYDRESIEHWLFQGNNN-AECPVT 115 (425)
Q Consensus 75 Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~-~~cP~~ 115 (425)
||||.++|+|||+++|||+||+.||++||+...+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999875422 579986
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.28 E-value=4.8e-11 Score=123.45 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=162.5
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHH
Q 041408 202 PRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNII 281 (425)
Q Consensus 202 i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~ 281 (425)
+|-.+.+|.+.+... +.+|..-|..++..++..+.-+... |+|+.||.+|.+ .+.+++.+|+++|.||.
T Consensus 235 lpe~i~mL~~q~~~~----qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~------~~~evq~~acgaLRNLv 303 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSV----QSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDH------RNDEVQRQACGALRNLV 303 (717)
T ss_pred cHHHHHHHhccChhh----hHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcC------CcHHHHHHHHHHHHhhh
Confidence 567788887766544 8999999999999988887777765 999999999998 89999999999999999
Q ss_pred hcccc--hhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc-------C-
Q 041408 282 QAASS--KFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA-------S- 351 (425)
Q Consensus 282 ~~~~~--~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~-------~- 351 (425)
.+..+ ++....+.+.|+.|+++|+.- .|.++++..+.+||||+++|.-+..++.. ++..|-+-+-.. +
T Consensus 304 f~~~~~~NKlai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 304 FGKSTDSNKLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred cccCCcccchhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence 87665 555455567799999999862 28899999999999999998888777764 566666655321 0
Q ss_pred -----CcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcC------ChHHHHHHHHHHHHHhccCCC
Q 041408 352 -----EKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQV------SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 352 -----~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~------s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..+...+.++|.|+++ ..++|+++.+..|.|..|+-.+.+. +.+.-|+++.+|.+|+..-..
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~ 456 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEA 456 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhh
Confidence 24566789999999998 8889999999999999999877632 457789999999999987543
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=5e-11 Score=98.53 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=102.0
Q ss_pred chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh
Q 041408 293 KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD 371 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e 371 (425)
+.|+++.|+++|.++ ++..++.|+++|.+++.. ++.+..+++.|++|.++++|.+. ++.++..|+++|.+|+....
T Consensus 5 ~~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 5 QAGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HcCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 458899999999998 899999999999999987 78899999999999999999986 89999999999999999765
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
.........|+++.|++.+...+...++.++++|++||.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 444444557899999998888888999999999999873
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.25 E-value=7e-11 Score=122.21 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=184.4
Q ss_pred HHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchh--hhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 160 LQIIKLIKDIWK--PELQTKTLIQLEVFAAENER--NRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 160 ~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
++|+.||..+.+ .+++.+|+++|+++.-+... |+-.|.+.|+||.++++|....+. ++++....+|+||++.|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~---ev~e~iTg~LWNLSS~D 351 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD---EVRELITGILWNLSSND 351 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch---HHHHHHHHHHhcccchh
Confidence 567788888854 58999999999999988665 999999999999999999864332 45899999999999886
Q ss_pred HHHHhhhhchhchHHHHHHHHcccc---ccccC-----CHHHHHHHHHHHHHHHh-cccchhHhhcchhHHHHHHHHhcc
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDD---ESIEN-----HKEIKSHALRILKNIIQ-AASSKFLQRLKPQIFQNIIRVLKQ 306 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~---~~~~~-----~~~~~~~A~~~L~~L~~-~~~~~~~~~~~~g~i~~Lv~lL~~ 306 (425)
.-...++. .++..|..-+-... +.-+. ..++-.++..+|.|+++ +.+.+.......|+|..|+..++.
T Consensus 352 ~lK~~ii~---~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 352 ALKMLIIT---SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred HHHHHHHH---HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHH
Confidence 54444443 45655544443100 00001 14456789999999988 566777777888999999999862
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCC--------------------------------chHH-----------------
Q 041408 307 R----VIAQQGINAALKLMLDACPSGR--------------------------------NRMI----------------- 333 (425)
Q Consensus 307 ~----~~~~~~~~~A~~aL~~L~~~~~--------------------------------n~~~----------------- 333 (425)
. ..+.+..+++...|+||+..-+ -+++
T Consensus 429 ~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~p 508 (717)
T KOG1048|consen 429 AIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAP 508 (717)
T ss_pred HHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCC
Confidence 2 2367889999999999985211 0011
Q ss_pred -----HHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-----HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHH
Q 041408 334 -----MVESGAVFELIELELTASEKKTTELILGILFHLCSC-----ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAIL 403 (425)
Q Consensus 334 -----iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-----~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~ 403 (425)
+...-+|.+-+.+|....++...|.++++|-||+.. ...+..++..+.|.|.++++|....+.+-+.+..
T Consensus 509 kG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~ 588 (717)
T KOG1048|consen 509 KGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG 588 (717)
T ss_pred CCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH
Confidence 112234445455665444678999999999999863 2455666567788999999998888888899999
Q ss_pred HHHHHhccCCChHHHH
Q 041408 404 ILSLICKFSGNFNFVV 419 (425)
Q Consensus 404 ~L~~l~~~~~~~~~~v 419 (425)
+|.||+.+-.+ +..+
T Consensus 589 ~LrNls~d~rn-k~li 603 (717)
T KOG1048|consen 589 ALRNLSRDIRN-KELI 603 (717)
T ss_pred HHhhhccCchh-hhhh
Confidence 99999998777 5444
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=1.2e-10 Score=96.15 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=100.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
|+++.++.+|++ .+...+..++++|.+++...+.......+.|+++.|+++|.++ ++.++..|+++|++|+.
T Consensus 7 ~~i~~l~~~l~~------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 7 GGLPALVSLLSS------SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA 78 (120)
T ss_pred CChHHHHHHHHc------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc
Confidence 899999999997 7899999999999999998555444445568999999999998 99999999999999998
Q ss_pred CC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 327 SG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 327 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
+. .....+++.|+++.|+++|.+. +..+++.|+.+|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 76 5677788899999999999886 88999999999999974
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2.4e-09 Score=100.82 Aligned_cols=230 Identities=13% Similarity=0.106 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHHHhhhch---------hhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhh
Q 041408 172 PELQTKTLIQLEVFAAENE---------RNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSA 242 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~---------~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v 242 (425)
....+++.++++.+.-+++ .+-+.+++.|+...|+..|...-+ +.....+..+|..|+..++-++.+.
T Consensus 204 ~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d---p~~L~~l~~tl~~lAVr~E~C~~I~ 280 (461)
T KOG4199|consen 204 TRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID---PDSLVSLSTTLKALAVRDEICKSIA 280 (461)
T ss_pred cHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC---ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889988865433 234567778899999999876543 2448888899999999998888887
Q ss_pred hchhchHHHHHHHHccccccccCCH---HHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHH
Q 041408 243 FEIDKIVESFTWVLALDDESIENHK---EIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALK 319 (425)
Q Consensus 243 ~~~~g~i~~Lv~lL~~~~~~~~~~~---~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~ 319 (425)
.. |++..|++++.. .+.. +.-+.++.+|+.|+-.++.+..++.. |+.+.++.++...+.+|.+.+.+..
T Consensus 281 e~--GGl~tl~~~i~d-----~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 281 ES--GGLDTLLRCIDD-----SNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred Hc--cCHHHHHHHHhh-----hchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChHHHHHHHH
Confidence 65 999999999985 1333 34467889999999999988888765 7789999988655568999999999
Q ss_pred HHHHhCC-CCCchHHHHhhCchHHHHHHhhccC-CcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 320 LMLDACP-SGRNRMIMVESGAVFELIELELTAS-EKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 320 aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
++.-||. .+++..++++.|+-...|+-|...+ ...++..|+..+.|++. ..+++.-++. .|+..|+..-+...+.
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--~GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--NGIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--ccHHHHHHHHHhcCcc
Confidence 9999996 7899999999999999999998764 35688999999999987 5566666654 5799999977777888
Q ss_pred HHHHHHHHHHHHhccCCC
Q 041408 397 ADDRAILILSLICKFSGN 414 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~~ 414 (425)
+...|-.+|+.|.-+-..
T Consensus 431 ce~~akaALRDLGc~v~l 448 (461)
T KOG4199|consen 431 CEAAAKAALRDLGCDVYL 448 (461)
T ss_pred HHHHHHHHHHhcCcchhh
Confidence 888899999988765444
No 24
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.16 E-value=2.8e-11 Score=106.45 Aligned_cols=63 Identities=25% Similarity=0.530 Sum_probs=53.1
Q ss_pred CCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcC-------------CCCCCCCCCCCCCCCCCCCCccH
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQG-------------NNNAECPVTKQPLPKDLDLTPNH 129 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~-------------~~~~~cP~~~~~l~~~~~l~pn~ 129 (425)
..+..++|.||||++.++|||+++|||.||+.||.+|+... ++...||.|+.+++. ..++|..
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~-~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE-ATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh-hcEEEee
Confidence 44677889999999999999999999999999999998631 124689999999987 7787764
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=4.2e-11 Score=117.76 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcC
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADN 142 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n 142 (425)
-..+...|.||||.++|.+||+++|||+||..||..|+... ..||.|+.++.. ..+.+|..+.++|+.|....
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~---~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ---PKCPLCRAEDQE-SKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC---CCCCCCCCcccc-ccCccchHHHHHHHHHHHhh
Confidence 34678889999999999999999999999999999999863 589999999986 78999999999999997643
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=4.6e-09 Score=108.86 Aligned_cols=229 Identities=11% Similarity=0.112 Sum_probs=177.7
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
++.++.-+++.|..++.+++.....+.+.+.++.++.+|.+++.. +...|+.+|..++........++.. +.++
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~----Va~~A~~~L~~l~~~~~~~~~l~~~--~~~~ 163 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLS----VAKAAIKALKKLASHPEGLEQLFDS--NLLS 163 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHH----HHHHHHHHHHHHhCCchhHHHHhCc--chHH
Confidence 357788889999998877777777888899999999999887654 3889999999999888777666654 6789
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCc
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRN 330 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n 330 (425)
.|..++.. .+...|-.+..++.+++..++.........|+++.+++.|.+. |.-++.+++..|..|+....+
T Consensus 164 ~L~~l~~~------~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 164 KLKSLMSQ------SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHG 235 (503)
T ss_pred HHHHHHhc------cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhH
Confidence 99999986 6788899999999999988887777777789999999999987 999999999999999999999
Q ss_pred hHHHHhhCchHHHHHHhhccC-Cc----chHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHh----cCChHHHHHH
Q 041408 331 RMIMVESGAVFELIELELTAS-EK----KTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIM----QVSPAADDRA 401 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~~-~~----~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~----~~s~~~~e~a 401 (425)
...+.+.|+++.|++++.+.. |+ ...-..+....+++... -..+. .+.|.++..+. ..+...+..|
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--~~~v~---~~~p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--PQEVL---ELYPAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--hHHHH---HHHHHHHHHHHHHhCCCChhHHHHH
Confidence 999999999999999997642 22 12223335555666531 11221 23455554444 3456778889
Q ss_pred HHHHHHHhccCCChHHHH
Q 041408 402 ILILSLICKFSGNFNFVV 419 (425)
Q Consensus 402 ~~~L~~l~~~~~~~~~~v 419 (425)
+.+|..|+..... +..+
T Consensus 311 ~dtlg~igst~~G-~~~L 327 (503)
T PF10508_consen 311 FDTLGQIGSTVEG-KQLL 327 (503)
T ss_pred HHHHHHHhCCHHH-HHHH
Confidence 9999999876554 5554
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=5.6e-09 Score=113.05 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC-ChHHHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI-TSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~-~~~~~~~~v~~~~g~i~ 250 (425)
..+.-|+-+|.+|+-++..||..+.. -|.+..+|..|.+...+. +---..+|.||+= -+.+.++++.+. |-+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL----~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVt 440 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL----LQVYASVLRNLSWRADSNMKKVLRET-GSVT 440 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH----HHHHHHHHHhccccccccHHHHHHhh-hhHH
Confidence 34455667788888888889888875 599999999997765332 4445689999974 344556677664 7777
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcc-cchhHhhcchhHHHHHHHHhccc--cCChHHHHHHHHHHHHhCC-
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAA-SSKFLQRLKPQIFQNIIRVLKQR--VIAQQGINAALKLMLDACP- 326 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~~A~~aL~~L~~- 326 (425)
.|+..--. ..+....+..+.+|+||+... +|+..+..-.|++..||.+|.-. +......+.|-..|.|+++
T Consensus 441 aLa~~al~-----~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~ 515 (2195)
T KOG2122|consen 441 ALAACALR-----NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL 515 (2195)
T ss_pred HHHHHHHH-----hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence 77665543 145556677889999998764 45556665579999999999532 2356788999999999886
Q ss_pred ---CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHH
Q 041408 327 ---SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAI 402 (425)
Q Consensus 327 ---~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~ 402 (425)
+.+.|..+.+...+..|++.|.+. +-.++-+++++|+||.. +++.++.+.. .|+++-|-.++.+.....-+-++
T Consensus 516 IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 516 IATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHH
Confidence 457888999999999999999987 77788999999999976 8888887765 77898888877655556677899
Q ss_pred HHHHHHhccCCC
Q 041408 403 LILSLICKFSGN 414 (425)
Q Consensus 403 ~~L~~l~~~~~~ 414 (425)
++|.||-.+-+.
T Consensus 594 aALrNLln~RPA 605 (2195)
T KOG2122|consen 594 AALRNLLNFRPA 605 (2195)
T ss_pred HHHHHHhcCCch
Confidence 999999888655
No 28
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.94 E-value=3.5e-10 Score=80.53 Aligned_cols=45 Identities=33% Similarity=0.705 Sum_probs=32.2
Q ss_pred CcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
-.++||||++.|+|||.. .|||+|+|..|.+|+..++ ...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~-~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNG-SKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS--EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcC-CCCCCCCC
Confidence 458999999999999986 8999999999999995432 57899965
No 29
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.90 E-value=1e-09 Score=72.26 Aligned_cols=38 Identities=39% Similarity=0.843 Sum_probs=32.9
Q ss_pred CcCCccCCCCc-eecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 75 CPISLQIMKDP-VTAITGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 75 Cpi~~~~m~dP-V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
||||++.+++| |+++|||+||+.||++|++.+ ..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~---~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN---PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT---SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc---CCCcCC
Confidence 89999999999 578999999999999999983 789986
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.86 E-value=1.4e-09 Score=72.61 Aligned_cols=38 Identities=21% Similarity=0.583 Sum_probs=24.3
Q ss_pred CcCCccCCCC----ceecCCCccccHHHHHHHHHcCC-CCCCCC
Q 041408 75 CPISLQIMKD----PVTAITGITYDRESIEHWLFQGN-NNAECP 113 (425)
Q Consensus 75 Cpi~~~~m~d----PV~~~~g~t~~r~~I~~~~~~~~-~~~~cP 113 (425)
||||.+ |.+ |++++|||+||+.||++++..+. +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 99999999999999999998652 346787
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.86 E-value=4.3e-07 Score=94.24 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=172.6
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHh
Q 041408 161 QIIKLIKDIWKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKL 240 (425)
Q Consensus 161 ~i~~lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~ 240 (425)
.+..++..+...+...+++..+.......+ ..+....+.+..+|.+.+.+ ..+.++.+|..+-...+ ...
T Consensus 4 ~~~~~l~~l~~~~~~~~~L~~l~~~~~~~~-----~l~~~~~~~lf~~L~~~~~e----~v~~~~~iL~~~l~~~~-~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSKAERLEALPELKTELSSSP-----FLERLPEPVLFDCLNTSNRE----QVELICDILKRLLSALS-PDS 73 (503)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhhh-----HHHhchHHHHHHHHhhcChH----HHHHHHHHHHHHHhccC-HHH
Confidence 345556666555666777777755432222 11122233377777655332 25666666666543211 122
Q ss_pred hhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHH
Q 041408 241 SAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKL 320 (425)
Q Consensus 241 ~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~a 320 (425)
+ . ++..+.|...|.+ .++.+|..++..|.++...++.......+.++++.++..|.++ +..+.+.|..+
T Consensus 74 l-~--~~~~~~L~~gL~h------~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~ 142 (503)
T PF10508_consen 74 L-L--PQYQPFLQRGLTH------PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKA 142 (503)
T ss_pred H-H--HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHH
Confidence 2 2 3688899999998 8999999999999999988877677777789999999999998 99999999999
Q ss_pred HHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHH
Q 041408 321 MLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDR 400 (425)
Q Consensus 321 L~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~ 400 (425)
|.+|+.+..+...+...+.++.|..++... +..++-++..++.+++...+.-...+...|.++.+++.+.......|..
T Consensus 143 L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqln 221 (503)
T PF10508_consen 143 LKKLASHPEGLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLN 221 (503)
T ss_pred HHHHhCCchhHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHH
Confidence 999999888888888999999999999874 6677888999999999855544455455788999999888766789999
Q ss_pred HHHHHHHHhccCCC
Q 041408 401 AILILSLICKFSGN 414 (425)
Q Consensus 401 a~~~L~~l~~~~~~ 414 (425)
++.+|..|+....+
T Consensus 222 alell~~La~~~~g 235 (503)
T PF10508_consen 222 ALELLSELAETPHG 235 (503)
T ss_pred HHHHHHHHHcChhH
Confidence 99999999995443
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7.5e-08 Score=94.62 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=144.1
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNI 300 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 300 (425)
...|+..|.||+.+-..--+.... .++..||+.|.. .+.+.....+..|..|+-.++++...+. .|.+..|
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrk--niV~mLVKaLdr------~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL 350 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRK--NIVAMLVKALDR------SNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH--hHHHHHHHHHcc------cchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHH
Confidence 566788999998765543333333 689999999998 7888888999999999999999887654 5999999
Q ss_pred HHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhcc
Q 041408 301 IRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHR 380 (425)
Q Consensus 301 v~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~ 380 (425)
++++... .++.++..+..|+||+....++.+|++.|.+|.|+.+|.+. .-..-|+.+|..++.....+..+ ...
T Consensus 351 ~klfp~~--h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mf-ayT 424 (791)
T KOG1222|consen 351 LKLFPIQ--HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMF-AYT 424 (791)
T ss_pred HHhcCCC--CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHH-HHH
Confidence 9999988 99999999999999999999999999999999999999764 22356889999998877666666 446
Q ss_pred ccHHHHHHHHhcCCh-HHHHHHHHHHHHHhccCCC
Q 041408 381 AAIAVVTKRIMQVSP-AADDRAILILSLICKFSGN 414 (425)
Q Consensus 381 g~i~~Lv~ll~~~s~-~~~e~a~~~L~~l~~~~~~ 414 (425)
..|+.+++.++.++. ++....++...+||-+..+
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 689999998888754 4444455555677776555
No 33
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.8e-08 Score=107.41 Aligned_cols=76 Identities=28% Similarity=0.554 Sum_probs=69.5
Q ss_pred cCCCCCCCcccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcC
Q 041408 64 HQDIEIPEYFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADN 142 (425)
Q Consensus 64 ~~~~~~p~~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n 142 (425)
+...++|++|..|++..+|+|||++| +|++.||+.|+.|+-.. .+.|+||.||+. +.+.||..|+..|+.|..+.
T Consensus 862 e~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~---~tdPFNR~pLt~-d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 862 EELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD---CTDPFNREPLTE-DMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred HHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC---CCCccccccCch-hhcCCCHHHHHHHHHHHHHh
Confidence 34557999999999999999999998 99999999999999874 689999999998 99999999999999998765
Q ss_pred C
Q 041408 143 S 143 (425)
Q Consensus 143 ~ 143 (425)
.
T Consensus 938 ~ 938 (943)
T KOG2042|consen 938 R 938 (943)
T ss_pred h
Confidence 4
No 34
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.71 E-value=1.2e-08 Score=68.02 Aligned_cols=40 Identities=33% Similarity=0.806 Sum_probs=36.0
Q ss_pred CcCCccCCCCce-ecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 75 CPISLQIMKDPV-TAITGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 75 Cpi~~~~m~dPV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
||||.+.+.+|+ +++|||+||+.||.+|+...+ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~-~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG-SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS-SSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC-CccCCcC
Confidence 899999999999 889999999999999999532 5789986
No 35
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.8e-06 Score=82.86 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHH
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~ 251 (425)
.+.+..|+..|..++. +-+|-.-+...|+.+.++.+|.+.+. .+++.|+++|+..+.+++..+..+.+. |+++.
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~----~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~ 170 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDA----ELRELAARVIGTAVQNNPKSQEQVIEL-GALSK 170 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcH----HHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHH
Confidence 4788999999999984 55666778888999888888877654 459999999999998887776666654 89999
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC-Cc
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG-RN 330 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~-~n 330 (425)
|...|++ +.+..++..|..++.++......-.......++...|..+|.++..+...+..++-.+..|...+ ..
T Consensus 171 Ll~~ls~-----~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 171 LLKILSS-----DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHHcc-----CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 9999997 47778899999999999998887766555556689999999985348899999999999998744 45
Q ss_pred hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHH----HHHhc-CChHHHHHHHHHH
Q 041408 331 RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVT----KRIMQ-VSPAADDRAILIL 405 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv----~ll~~-~s~~~~e~a~~~L 405 (425)
...+-..|....++.+.... +..+.+.++.++..+...-..+..+....-+..-+. +.+.. .....+..-+.-+
T Consensus 246 ~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l 324 (342)
T KOG2160|consen 246 EDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSL 324 (342)
T ss_pred hhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667777777777765 778888888888777653333332211111222222 21110 0124455666667
Q ss_pred HHHhccCCC
Q 041408 406 SLICKFSGN 414 (425)
Q Consensus 406 ~~l~~~~~~ 414 (425)
|..+...+.
T Consensus 325 ~~~~~e~~~ 333 (342)
T KOG2160|consen 325 WEICGEVPS 333 (342)
T ss_pred HHHhcccHH
Confidence 777776555
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.71 E-value=7.8e-07 Score=86.81 Aligned_cols=222 Identities=11% Similarity=0.020 Sum_probs=150.7
Q ss_pred HHHHHHHHh-cChhHHHHHHHHHHHHhhhchhhhhHHhhc------CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 161 QIIKLIKDI-WKPELQTKTLIQLEVFAAENERNRKCMAEA------GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 161 ~i~~lv~~l-~s~~~~~~Al~~L~~la~~~~~~r~~i~~~------G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
-+..++..+ ++.+...-.+..+..+..+++...+.+.+. .....+++++.+++. ..+..|+.+|..+..
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~----~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS----FIQLKAAFILTSLLS 134 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH----HHHHHHHHHHHHHHH
Confidence 345677777 566777778888888887777666655551 246667777765543 348889999998765
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-----cccc
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-----KQRV 308 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-----~~~~ 308 (425)
..+........ +.++.++..|++.. ...+.+.+..|+.+|.+|...+..+..+.. .|+++.|+++| .++.
T Consensus 135 ~~~~~~~~~~~--~~l~~ll~~L~~~l--~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRSEKLVK--EALPKLLQWLSSQL--SSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT--HHHHH--HHHHHHHHHHH-TT---HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH--------
T ss_pred cCCccccchHH--HHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCC
Confidence 54433222222 67788888877421 012344568899999999998888887766 68899999999 2222
Q ss_pred CChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh--hHHHHhhccccHHHH
Q 041408 309 IAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD--GRAQFLSHRAAIAVV 386 (425)
Q Consensus 309 ~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e--~r~~~~~~~g~i~~L 386 (425)
.+.+.+=.++-++|-|+.+++....+.+.+.||.|++++......++...++++|.||+..+. ....++. . +++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~-~~l~~ 287 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-C-GLLKT 287 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H--HHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-c-cHHHH
Confidence 366888899999999999999999999999999999999886567899999999999999666 5666655 4 45566
Q ss_pred HHHHhcC
Q 041408 387 TKRIMQV 393 (425)
Q Consensus 387 v~ll~~~ 393 (425)
++.|...
T Consensus 288 l~~L~~r 294 (312)
T PF03224_consen 288 LQNLSER 294 (312)
T ss_dssp HHHHHSS
T ss_pred HHHHhcC
Confidence 6656543
No 37
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.71 E-value=4.1e-07 Score=88.77 Aligned_cols=223 Identities=12% Similarity=0.103 Sum_probs=146.5
Q ss_pred HHHHhhhchhhhhHHhhc---CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhch-----hchHHHHH
Q 041408 182 LEVFAAENERNRKCMAEA---GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEI-----DKIVESFT 253 (425)
Q Consensus 182 L~~la~~~~~~r~~i~~~---G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~-----~g~i~~Lv 253 (425)
+..+-+.....|..+++. +....++.+|..... +.+.+...+..+..+..+++....++... +.....++
T Consensus 34 ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~--~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl 111 (312)
T PF03224_consen 34 IKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSS--NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL 111 (312)
T ss_dssp HHHHHHHHH-------------------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred HHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence 333333344445445543 446777888876511 12347778888888776665444444431 12567788
Q ss_pred HHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc--CChHHHHHHHHHHHHhCCCCCch
Q 041408 254 WVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV--IAQQGINAALKLMLDACPSGRNR 331 (425)
Q Consensus 254 ~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~~~~~~A~~aL~~L~~~~~n~ 331 (425)
.++.+ ++.-++..|+.+|..+............ .+.++.+++.|.+.. .+...+..|+.+|.+|...++.|
T Consensus 112 ~ll~~------~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 112 KLLDR------NDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp HH-S-------SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred HHhcC------CCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 88887 7899999999999999887765554322 467888888887531 14456789999999999999999
Q ss_pred HHHHhhCchHHHHHHh------hccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHH
Q 041408 332 MIMVESGAVFELIELE------LTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILI 404 (425)
Q Consensus 332 ~~iv~~G~v~~Lv~lL------~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~ 404 (425)
..+.+.|.++.|+.+| ....+..++=.++-+++.|+-.++....+.... .|+.|++++... ..++.+.++++
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHH
Confidence 9999999999999999 222345677788999999999999999887754 899999977755 46888999999
Q ss_pred HHHHhccCCC
Q 041408 405 LSLICKFSGN 414 (425)
Q Consensus 405 L~~l~~~~~~ 414 (425)
|.||...+..
T Consensus 264 l~Nl~~~~~~ 273 (312)
T PF03224_consen 264 LRNLLSKAPK 273 (312)
T ss_dssp HHHTTSSSST
T ss_pred HHHHHhccHH
Confidence 9999998775
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.70 E-value=5.9e-09 Score=97.50 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=61.2
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
+-.-+.|-||++.|+-|+++|||||||--||..|+.. .+.||.|..++.. ..|..|.-+.++|+.|..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~---~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY---KPQCPTCCVTVTE-SDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc---CCCCCceecccch-hhhhhhhHHHHHHHHHHH
Confidence 3445799999999999999999999999999999987 4899999999987 889999999999988754
No 39
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=6e-07 Score=88.40 Aligned_cols=233 Identities=12% Similarity=0.148 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCh-----hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 160 LQIIKLIKDIWKP-----ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 160 ~~i~~lv~~l~s~-----~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
..+..+...+... .....|+--|.+++.. -..-..|+.-++|..||+.|...+.+ .....+..|..|+.-
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n~~----Ll~lv~~FLkKLSIf 334 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSNSS----LLTLVIKFLKKLSIF 334 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccchH----HHHHHHHHHHHhhhh
Confidence 4455555554332 2223355556677743 23334566678899999999766533 255666788888877
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGI 314 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 314 (425)
+++.. .+... |+|+.|+++... ..++.+...+.+|+|++.....+...+ ..|.+|.|+.+|.+. + -.
T Consensus 335 ~eNK~-~M~~~-~iveKL~klfp~------~h~dL~~~tl~LlfNlSFD~glr~KMv-~~GllP~l~~ll~~d--~--~~ 401 (791)
T KOG1222|consen 335 DENKI-VMEQN-GIVEKLLKLFPI------QHPDLRKATLMLLFNLSFDSGLRPKMV-NGGLLPHLASLLDSD--T--KH 401 (791)
T ss_pred ccchH-HHHhc-cHHHHHHHhcCC------CCHHHHHHHHHHhhhccccccccHHHh-hccchHHHHHHhCCc--c--cc
Confidence 66544 44443 999999999997 889999999999999998887777644 569999999999865 3 33
Q ss_pred HHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 315 NAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 315 ~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.-|+..|+.++-+++.+..+.-..+|+.+.+.+.++.+.++.-..++.-.|||....+.+.+++ +.|+..|++.-.+..
T Consensus 402 ~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~ 480 (791)
T KOG1222|consen 402 GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSR 480 (791)
T ss_pred hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhccc
Confidence 4689999999999999999999999999999998875666655555556788887767666666 778888887544332
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
+. .-..++++++.|.+.
T Consensus 481 D~---lLmK~vRniSqHeg~ 497 (791)
T KOG1222|consen 481 DL---LLMKVVRNISQHEGA 497 (791)
T ss_pred ch---HHHHHHHHhhhccch
Confidence 22 356777888887764
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.68 E-value=2.1e-06 Score=83.75 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCC---cccHHHHHHHHHhcCC
Q 041408 159 KLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQ---VGGLEGALSILHFFKI 233 (425)
Q Consensus 159 ~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~---~~~~~~Al~~L~~L~~ 233 (425)
.+.+.+|.+..+|+ +...+..++|.+++-.+.++|..+.+.|+-..++.+|+......+ .+...-+.+.|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 44455555555443 677888999999999999999999999998888888865443221 1223445678888666
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccc--------------------ccc----c----------------cCCHHHHHHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALD--------------------DES----I----------------ENHKEIKSHA 273 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~--------------------~~~----~----------------~~~~~~~~~A 273 (425)
+.++.+.-+.+. |+++.|+..+.-. +.+ . .-+++.++-.
T Consensus 166 ~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 166 DSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 655554444432 6665544433200 000 0 0001111111
Q ss_pred HHHHHHHHh-------------------------------------------------cccchhHhhcchhHHHHHHHHh
Q 041408 274 LRILKNIIQ-------------------------------------------------AASSKFLQRLKPQIFQNIIRVL 304 (425)
Q Consensus 274 ~~~L~~L~~-------------------------------------------------~~~~~~~~~~~~g~i~~Lv~lL 304 (425)
..+|...+. ++++.......+.++..+++-+
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 112222221 2222222222333667777777
Q ss_pred ccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc----CCcchHHHHHHHHHHHhCCHhhHHHHhhcc
Q 041408 305 KQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA----SEKKTTELILGILFHLCSCADGRAQFLSHR 380 (425)
Q Consensus 305 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~----~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~ 380 (425)
.+. +....-.+.-+|.|+++.+++...+++.|.+.-|+++|..+ ++...+..++++|.||.---.++.+++. +
T Consensus 325 ~S~--d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-a 401 (604)
T KOG4500|consen 325 RSD--DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-A 401 (604)
T ss_pred cCC--chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-c
Confidence 776 88899999999999999999999999999999999999652 2567899999999999987778888865 7
Q ss_pred ccHHHHHHHHhcCChHHHHHHHHHHHH
Q 041408 381 AAIAVVTKRIMQVSPAADDRAILILSL 407 (425)
Q Consensus 381 g~i~~Lv~ll~~~s~~~~e~a~~~L~~ 407 (425)
|...+++..+...++.++..-+..|+.
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM 428 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRM 428 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 777788777777777666555555543
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.66 E-value=7.3e-09 Score=73.83 Aligned_cols=59 Identities=29% Similarity=0.473 Sum_probs=32.9
Q ss_pred CcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q 041408 71 EYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLI 135 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I 135 (425)
+-+.|++|.++|++||.+ .|.|.||..||.+.+. ..||+|+.|... .++.-|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-----~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-----SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-----TB-SSS--B-S--SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-----CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 457899999999999965 8999999999977553 359999999876 7889998887765
No 42
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.66 E-value=2.8e-06 Score=82.80 Aligned_cols=229 Identities=12% Similarity=0.069 Sum_probs=166.0
Q ss_pred HHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhh-cccCC--Cc-ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHH
Q 041408 177 KTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVN-CCDKN--QV-GGLEGALSILHFFKITSEYMKLSAFEIDKIVESF 252 (425)
Q Consensus 177 ~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~--~~-~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~L 252 (425)
+.+-.+.....+++..+-.+++.|.+..++.++.. ..... +. .....+......|..+++..+.+... +.++..+
T Consensus 242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~-p~~l~~~ 320 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHAD-PQFLDFL 320 (604)
T ss_pred hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcC-cHHHHHH
Confidence 33333433344678888889999999999999876 22111 00 01122333444455677766666664 3489999
Q ss_pred HHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc---cCChHHHHHHHHHHHHhCCCCC
Q 041408 253 TWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR---VIAQQGINAALKLMLDACPSGR 329 (425)
Q Consensus 253 v~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~~A~~aL~~L~~~~~ 329 (425)
+.-+.+ .+......++-++.|++..++.++..+. .|++.-|+++|... ..+.+.+.+++.||+||...-.
T Consensus 321 ~sw~~S------~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 321 ESWFRS------DDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHhcC------CchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 999998 7888899999999999999999988665 59999999999531 2378899999999999999999
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH-HHHhhccccHHHHHHHHhcCC----h-HHHHHHHH
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGR-AQFLSHRAAIAVVTKRIMQVS----P-AADDRAIL 403 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r-~~~~~~~g~i~~Lv~ll~~~s----~-~~~e~a~~ 403 (425)
|+..++.+|++..++..|... .+.++-.-+++|..+....+.- .++.. =|.+++.|..+| . -+...+.+
T Consensus 394 nka~~~~aGvteaIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~k----n~~l~ekLv~Wsks~D~aGv~gESnR 468 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAK----NPELFEKLVDWSKSPDFAGVAGESNR 468 (604)
T ss_pred chhhccccchHHHHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhc----CHHHHHHHHHhhhCCccchhhhhhhH
Confidence 999999999999999999887 7888888899999887755522 23322 345555454442 1 24556788
Q ss_pred HHHHHhccCCChHHHH
Q 041408 404 ILSLICKFSGNFNFVV 419 (425)
Q Consensus 404 ~L~~l~~~~~~~~~~v 419 (425)
.|..+-+|+.. +.++
T Consensus 469 ll~~lIkHs~~-kdv~ 483 (604)
T KOG4500|consen 469 LLLGLIKHSKY-KDVI 483 (604)
T ss_pred HHHHHHHhhHh-hhhH
Confidence 88888888776 4444
No 43
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.65 E-value=2.5e-08 Score=69.50 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=40.7
Q ss_pred CcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+++.|+||++.+.+++++||||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence 46789999999999999999999 999999999995 479999998874
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.8e-06 Score=88.19 Aligned_cols=220 Identities=13% Similarity=0.099 Sum_probs=167.7
Q ss_pred CCCHHHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 156 PLSKLQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 156 ~~~~~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
+-.++-|..|+.+..+ .+.++.|++.|..+++ .+|..++. -+++.|+..|.....+ ++....++.++.++.
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMD--PEIIKYALDTLLILT 91 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCC--HHHHHHHHHHHHHHH
Confidence 3346778889888844 3889999999999875 57777764 4568888899766543 356888899999877
Q ss_pred CChH------H----------HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc--hhHhhcch
Q 041408 233 ITSE------Y----------MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS--KFLQRLKP 294 (425)
Q Consensus 233 ~~~~------~----------~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~--~~~~~~~~ 294 (425)
.+++ . ...++....+.|..++..+.. -+..+|..++.+|.++.+.... +..+...+
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~------~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P 165 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE------FDFHVRLYAIQLLSALLSCRPTELQDALLVSP 165 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh------hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence 6553 1 112222234778999999987 7889999999999999775543 33455566
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh-hCchHHHHHHhhccC--C-cchHHHHHHHHHHHhC-C
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE-SGAVFELIELELTAS--E-KKTTELILGILFHLCS-C 369 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~-~G~v~~Lv~lL~~~~--~-~~~~e~Al~~L~~L~~-~ 369 (425)
-+|..|+.+|.+. -...|..|.-.|..|+....+..++|. .++..-|..++...+ | .-+.+.++..|.||.. +
T Consensus 166 ~gIS~lmdlL~Ds--rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 166 MGISKLMDLLRDS--REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hhHHHHHHHHhhh--hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 7799999999987 778899999999999998877777776 689999999997753 2 3588999999999998 4
Q ss_pred HhhHHHHhhccccHHHHHHHH
Q 041408 370 ADGRAQFLSHRAAIAVVTKRI 390 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv~ll 390 (425)
..|+.-+.+ ++-||.|.++|
T Consensus 244 ~SNQ~~FrE-~~~i~rL~klL 263 (970)
T KOG0946|consen 244 ISNQNFFRE-GSYIPRLLKLL 263 (970)
T ss_pred cchhhHHhc-cccHHHHHhhc
Confidence 456666655 78899999844
No 45
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=5.2e-08 Score=89.73 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=41.8
Q ss_pred CCCCcccCcCCccCCCCc--------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDP--------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dP--------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+..++..||||++.+.+| ++++|||+||+.||.+|+.. ..+||.||.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEee
Confidence 345568999999987764 56689999999999999986 379999998874
No 46
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-07 Score=94.72 Aligned_cols=75 Identities=33% Similarity=0.530 Sum_probs=67.9
Q ss_pred CCCCCCCcccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 65 QDIEIPEYFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
+-.++|++|..|++..+|+|||++| +|.+.+|+.|..++-.+ .++|+.|.|+.. ++++||..|++.|-.|....+
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd---~tDPFNRmPLtl-ddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD---GTDPFNRMPLTL-DDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC---CCCccccCCCch-hhcCCCHHHHHHHHHHHhccc
Confidence 3458999999999999999999996 89999999999999875 689999999997 999999999999999876544
No 47
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.7e-08 Score=88.39 Aligned_cols=58 Identities=31% Similarity=0.585 Sum_probs=50.9
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccH
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNH 129 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~ 129 (425)
..|-|-||.+.-+|||++.|||-||=-||-+|+........||+|+...+. +.++|-.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~-~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI-DTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc-ceEEeee
Confidence 469999999999999999999999999999999864435779999999987 8888853
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.7e-06 Score=78.25 Aligned_cols=183 Identities=13% Similarity=0.024 Sum_probs=141.4
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
+.++.|+.-|..+..+=++...++.. |+...++..+++ .+.++|..|+++|..++.++...+..+.+.|+.+
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~--ggl~~ll~~l~~------~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISL--GGLVPLLGYLEN------SDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhc--cCHHHHHHHhcC------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 55788888888887766666677764 666667779987 8999999999999999999988887777788999
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhcc-CCcchHHHHHHHHHHHhCC-HhhHHH
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTA-SEKKTTELILGILFHLCSC-ADGRAQ 375 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~~-~e~r~~ 375 (425)
.|+.+|... .+..++..|+.|+++|-.+ ......+...++...|...|.++ .+...+..|+..+..|... ...+.
T Consensus 170 ~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d- 247 (342)
T KOG2160|consen 170 KLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED- 247 (342)
T ss_pred HHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-
Confidence 999999854 3567889999999999984 56888888888899999999885 2678889999999999873 33333
Q ss_pred HhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 376 FLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 376 ~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
++..-+....++.+.........+.++.++..+...
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 445444444444544455677888888777665443
No 49
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.51 E-value=6e-08 Score=88.99 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=59.1
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
.+-.-+.|-||.+.++-|+.++||||||--||..|+.. .+.||.|+.+.+. .-+..+..++..++.+...
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~---qp~CP~Cr~~~~e-srlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT---QPFCPVCREDPCE-SRLRGSSGSREINESHARN 90 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC---CCCCccccccHHh-hhcccchhHHHHHHhhhhc
Confidence 34445799999999999999999999999999999987 4899999999876 6677777777777777553
No 50
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.9e-08 Score=83.31 Aligned_cols=50 Identities=20% Similarity=0.479 Sum_probs=42.2
Q ss_pred cccCcCCccCCCCce--ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPV--TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDL 125 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV--~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l 125 (425)
-|.||||++-++.-| .+.|||.||+.||++.++.. ..||.|++.+.. .++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~---~~CP~C~kkIt~-k~~ 182 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT---NKCPTCRKKITH-KQF 182 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC---CCCCCcccccch-hhh
Confidence 399999999887655 57999999999999999975 689999987765 444
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.2e-06 Score=85.01 Aligned_cols=239 Identities=15% Similarity=0.124 Sum_probs=169.1
Q ss_pred HHHHHHHHHHh---cChhHHHHHHHHHH-HHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 159 KLQIIKLIKDI---WKPELQTKTLIQLE-VFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 159 ~~~i~~lv~~l---~s~~~~~~Al~~L~-~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
...+..|++.+ +++..+.+|+..|+ .+..++++.-..+--.-.||.|+.+|...+ +.+++..|+++|.+|+..
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~---n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH---NFDIMLLACRALTYLCEV 242 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHhh
Confidence 34566777777 24577888998885 445566554443333467899999997654 346689999999999865
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGI 314 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 314 (425)
-+..-.++.+. ++||.|+.-|.. =.-.++.+.+..+|..++....- ....+|++-..+..|.-. +..++
T Consensus 243 lP~S~a~vV~~-~aIPvl~~kL~~-----IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQ 311 (1051)
T KOG0168|consen 243 LPRSSAIVVDE-HAIPVLLEKLLT-----IEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQ 311 (1051)
T ss_pred ccchhheeecc-cchHHHHHhhhh-----hhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHH
Confidence 55444555543 899999888875 14567888999999999987653 334568888888888877 78899
Q ss_pred HHHHHHHHHhCCC--CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH----hhHHHHhhccccHHHHHH
Q 041408 315 NAALKLMLDACPS--GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA----DGRAQFLSHRAAIAVVTK 388 (425)
Q Consensus 315 ~~A~~aL~~L~~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~----e~r~~~~~~~g~i~~Lv~ 388 (425)
+.|+.+..|.|.. .+.-..+++ ++|.|-.+|... |....|.++-.+..++... +--.++.. -+-|.-.++
T Consensus 312 R~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~q 387 (1051)
T KOG0168|consen 312 RVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQ 387 (1051)
T ss_pred HHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHH
Confidence 9999999999973 445555554 799999999887 8889999999999988632 22334444 344555556
Q ss_pred HHhcC----ChHHHHHHHHHHHHHhccCCCh
Q 041408 389 RIMQV----SPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 389 ll~~~----s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
+|.-. +....-..+..|..+|..++..
T Consensus 388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 44321 2233445677777777776664
No 52
>PRK09687 putative lyase; Provisional
Probab=98.48 E-value=6e-06 Score=79.13 Aligned_cols=93 Identities=11% Similarity=-0.023 Sum_probs=63.6
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
.+++.|+.+|.+. ++.++..|+.+|..+.... ..++++|+.+|.+. +..++..|+.+|..+-
T Consensus 159 ~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~------- 220 (280)
T PRK09687 159 AAIPLLINLLKDP--NGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDK-NEEIRIEAIIGLALRK------- 220 (280)
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCC-ChHHHHHHHHHHHccC-------
Confidence 4678888888877 7788888888888773211 14667788888765 7777777777776642
Q ss_pred HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 375 QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
+..++|.|++.|..+. .+..++.+|-.+...
T Consensus 221 ----~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 221 ----DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK 251 (280)
T ss_pred ----ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence 1246888888776544 455677777766553
No 53
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.47 E-value=7.2e-08 Score=65.22 Aligned_cols=40 Identities=33% Similarity=0.718 Sum_probs=33.7
Q ss_pred cCcCCccCCC---CceecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 74 ICPISLQIMK---DPVTAITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 74 ~Cpi~~~~m~---dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
.||||++.|. .++.++|||.|.+.||.+|+... .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---CcCCccC
Confidence 4999999983 45577999999999999999984 6999985
No 54
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.3e-07 Score=91.64 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=61.4
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSA 144 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~~ 144 (425)
...+++.||||.+.|++|++++|||+||+.||..+|. . ...||.|+. . . ..+.+|..+.++++.+...+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~--~~~Cp~cr~-~-~-~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G--PLSCPVCRP-P-S-RNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C--CcCCcccCC-c-h-hccCccHHHHHHHHHHHhcCCc
Confidence 4668899999999999999999999999999999998 3 589999996 3 3 3677999999999988877654
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.2e-07 Score=87.60 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDL 125 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l 125 (425)
-.+..+.|-||.+-++||--+||||.||=+||.+|+.+. ..||.||.++++ ..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek---~eCPlCR~~~~p-skv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK---AECPLCREKFQP-SKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc---cCCCcccccCCC-cce
Confidence 345559999999999999999999999999999999875 579999999976 443
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9e-06 Score=85.08 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=140.4
Q ss_pred HHHHHHHHHh-cCCChHHH-HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 221 LEGALSILHF-FKITSEYM-KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 221 ~~~Al~~L~~-L~~~~~~~-~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
+..|+.-|.. |+.++++. .-+... ..+|.||.+|+. +.|.+++..|+++|.+|+..-.....++++.++||
T Consensus 185 Qleal~Elce~L~mgnEesLs~fpv~--slvp~Lv~LL~~-----E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP 257 (1051)
T KOG0168|consen 185 QLEALTELCEMLSMGNEESLSGFPVK--SLVPVLVALLSH-----EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP 257 (1051)
T ss_pred HHHHHHHHHHHHhhcchhhhccccHH--HHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence 5566665554 34443332 222222 689999999998 68999999999999999998776677777889999
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC--CHhhHHHH
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS--CADGRAQF 376 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~--~~e~r~~~ 376 (425)
.|+.-|..= ...++-|.++.||-.++.. .-+.+.++|++...+..|.=- +..++..|+++..|+|. .++.-.-+
T Consensus 258 vl~~kL~~I-eyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v 333 (1051)
T KOG0168|consen 258 VLLEKLLTI-EYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFV 333 (1051)
T ss_pred HHHHhhhhh-hhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHH
Confidence 998877533 2678999999999999873 345678999999999888544 67799999999999997 45555556
Q ss_pred hhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHHHHh
Q 041408 377 LSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEM 422 (425)
Q Consensus 377 ~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~ 422 (425)
++ ++|.|..+|..-..+.-|.+..++..++.....+...+++.
T Consensus 334 ~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 334 ME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQL 376 (1051)
T ss_pred HH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHH
Confidence 55 68999997776667777787777777765444445566654
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.39 E-value=3.6e-07 Score=61.50 Aligned_cols=43 Identities=35% Similarity=0.883 Sum_probs=37.9
Q ss_pred cCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
.||||++.+.+|+.++ |||.|++.|+.+|+..+ ...||.|+.+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--cCCCCCCCCc
Confidence 4999999999999775 99999999999999874 4789999865
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.27 E-value=1e-06 Score=57.18 Aligned_cols=39 Identities=46% Similarity=0.933 Sum_probs=35.2
Q ss_pred CcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 75 CPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 75 Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
||||++..++|+.++|||.|+..|+..|+..+ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--cCCCCCC
Confidence 89999999999999999999999999999843 4679986
No 59
>PHA02926 zinc finger-like protein; Provisional
Probab=98.24 E-value=7.8e-07 Score=79.36 Aligned_cols=59 Identities=12% Similarity=0.296 Sum_probs=44.9
Q ss_pred CCCCcccCcCCccCCCC---------ceecCCCccccHHHHHHHHHcCC---CCCCCCCCCCCCCCCCCCCccH
Q 041408 68 EIPEYFICPISLQIMKD---------PVTAITGITYDRESIEHWLFQGN---NNAECPVTKQPLPKDLDLTPNH 129 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~d---------PV~~~~g~t~~r~~I~~~~~~~~---~~~~cP~~~~~l~~~~~l~pn~ 129 (425)
...++..|+||++..-+ +++.+|||+||..||.+|..... ....||.||..+. .++|+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~---~I~pSr 236 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR---NITMSK 236 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee---eecccc
Confidence 45667889999988644 46679999999999999997531 2457999999874 345544
No 60
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=2.6e-06 Score=80.82 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=45.2
Q ss_pred CcccCcCCcc-CCCCce---ec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCC----CCccHHHHHH
Q 041408 71 EYFICPISLQ-IMKDPV---TA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLD----LTPNHTLRRL 134 (425)
Q Consensus 71 ~~~~Cpi~~~-~m~dPV---~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~----l~pn~~l~~~ 134 (425)
++..||+|+. ....|- ++ +|||+||++||..+|..+ ...||.|+.++.. .. ..++..+.+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~--~~~CP~C~~~lrk-~~fr~q~F~D~~vekE 71 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--SGSCPECDTPLRK-NNFRVQLFEDPTVEKE 71 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC--CCCCCCCCCccch-hhccccccccHHHHHH
Confidence 4578999997 244564 22 799999999999998765 4789999999875 44 5556555444
No 61
>PRK09687 putative lyase; Provisional
Probab=98.14 E-value=7.2e-05 Score=71.72 Aligned_cols=152 Identities=11% Similarity=-0.018 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
.++..|+++|+.|...+.. . ..+++.|..++.. ..++.+|..|+.+|.+++...... ...+++
T Consensus 69 ~vR~~A~~aLg~lg~~~~~-----~--~~a~~~L~~l~~~-----D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~ 131 (280)
T PRK09687 69 IERDIGADILSQLGMAKRC-----Q--DNVFNILNNLALE-----DKSACVRASAINATGHRCKKNPLY-----SPKIVE 131 (280)
T ss_pred HHHHHHHHHHHhcCCCccc-----h--HHHHHHHHHHHhc-----CCCHHHHHHHHHHHhccccccccc-----chHHHH
Confidence 4477777777776532210 1 1366667666433 267778888888887775433211 234567
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.|...+.+. ++.+|..|+.+|..+. ...+++.|+.+|.+. +..+...|+.+|..+...
T Consensus 132 ~l~~~~~D~--~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~--------- 189 (280)
T PRK09687 132 QSQITAFDK--STNVRFAVAFALSVIN----------DEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYD--------- 189 (280)
T ss_pred HHHHHhhCC--CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCC---------
Confidence 777777776 7788888888775432 234789999999875 778888888888888321
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 379 HRAAIAVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 379 ~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
....++.|++.|...+..++..|+.+|..+-
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 1235678888787778888888888887653
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.10 E-value=0.00074 Score=67.96 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=145.1
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhch----hchHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEI----DKIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~----~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
..+..++.+|...... ......+..+..|..+++.....+.+. +.....++.+|.+ .+.-+...|+.
T Consensus 53 ~y~~~~l~ll~~~~~~---d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~------~d~~i~~~a~~ 123 (429)
T cd00256 53 QYVKTFVNLLSQIDKD---DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR------QDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHHhccCcH---HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC------CchhHHHHHHH
Confidence 5667778888654322 346777777777776666554444432 3456777888887 77788899999
Q ss_pred HHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccC-Ccc
Q 041408 276 ILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTAS-EKK 354 (425)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~ 354 (425)
+|..+..............-.+..|...|+++ .+...+.-|+.+|..|...++.|..+.+.+++++|+.+|.... +..
T Consensus 124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHHHHHhcCccccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 99998765433211111112445666677654 2467888899999999999999999999999999999998643 345
Q ss_pred hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccC
Q 041408 355 TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFS 412 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~ 412 (425)
.+=.++-+++.|+-.+++.... ...+.|+.|++++... -.++.+.++++|.||...+
T Consensus 203 l~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 6667888999998888766655 4467899999976654 3477889999999998854
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.09 E-value=3.2e-06 Score=78.06 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=56.6
Q ss_pred ccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcC
Q 041408 73 FICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADN 142 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n 142 (425)
+.||+|+.++++|+-+ +|||+||..||+..+... .+.||.|...--..+.+.|+...+..|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds--Df~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS--DFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc--cccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999988 799999999999999876 4899999643111267889998888888887643
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.06 E-value=5.6e-05 Score=62.82 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=106.7
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
+.+..||.-.+. ..+.+.++....-|.|.+.+..|-.. ..+..++..+++.|... +...++-+...|+|+|.
T Consensus 16 ~Ylq~LV~efq~-----tt~~eakeqv~ANLANFAYDP~Nys~-Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 16 EYLQHLVDEFQT-----TTNIEAKEQVTANLANFAYDPINYSH-LRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHHHHHHHHH-----hccHHHHHHHHHHHHhhccCcchHHH-HHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhcc
Confidence 567777777775 37889999988888888876655443 34567899999999988 99999999999999999
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcC
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
...|.+.|.+++.+|..+..+.+. .......|+.+|..|+. ....|..+. -|++++.+...
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQRW 149 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHHHH
Confidence 999999999999999999999875 66778888999998887 344555553 36667766544
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.06 E-value=0.00055 Score=68.86 Aligned_cols=209 Identities=11% Similarity=0.057 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhc-----CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchh
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEA-----GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEID 246 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~-----G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~ 246 (425)
.+...-.+.-+..+...++..-..+.+. .....++.+|.+.+. -+...|..+|..+.........-... .
T Consensus 68 ~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~----~i~~~a~~iLt~l~~~~~~~~~~~~l-~ 142 (429)
T cd00256 68 DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ----FIVHMSFSILAKLACFGLAKMEGSDL-D 142 (429)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch----hHHHHHHHHHHHHHhcCccccchhHH-H
Confidence 3445555555566655555444444443 455666677765433 34788888888875432211000000 0
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
-.++-+...|++ +.+...+.-|+..|..|...+..+..+... +++++|+.+|+....+.+.+=.++-++|-|+.
T Consensus 143 ~~~~~l~~~l~~-----~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 143 YYFNWLKEQLNN-----ITNNDYVQTAARCLQMLLRVDEYRFAFVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred HHHHHHHHHhhc-----cCCcchHHHHHHHHHHHhCCchHHHHHHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 233445556654 245677788899999999999998776654 46899999998752245788899999999999
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh-------hHHHHhhccccHHHHHHHHhcC
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD-------GRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e-------~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
.++....+.+.|.||.|++++......++...++++|.||...+. ....++. . +++.+++.|...
T Consensus 217 ~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~-~l~~~l~~L~~r 288 (429)
T cd00256 217 NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-C-KVLKTLQSLEQR 288 (429)
T ss_pred cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-c-ChHHHHHHHhcC
Confidence 888777788899999999999886567899999999999998542 1223332 3 567777767544
No 66
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.02 E-value=4.9e-06 Score=56.14 Aligned_cols=41 Identities=15% Similarity=0.441 Sum_probs=34.5
Q ss_pred cCcCCccCC---CCceecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 041408 74 ICPISLQIM---KDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQ 117 (425)
Q Consensus 74 ~Cpi~~~~m---~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~ 117 (425)
.||+|.+.+ +.|++++|||+||..||..+. .. ...||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~--~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GK--SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CC--CCCCcCCCC
Confidence 389999998 457788999999999999998 22 478999974
No 67
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4e-06 Score=87.41 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=48.2
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
-.-++||+|..-.+|-|++.|||.||-.||+..+... ...||.|+.+|.. .++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR--qRKCP~Cn~aFga-nDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR--QRKCPKCNAAFGA-NDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh--cCCCCCCCCCCCc-ccccc
Confidence 4457999999999999999999999999999999876 5899999999987 55543
No 68
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.4e-06 Score=82.67 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=59.9
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
.+-.+|.||||+.+++--.++ .|+|.||+.||-..+..+ +..||.|++.+.....|.++..+-.+|.+...
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g--n~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG--NNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc--CCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 456679999999999999888 599999999999999887 58999999998655788888877777776543
No 69
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.2e-06 Score=81.17 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=69.2
Q ss_pred chhhccCChhHHHHHHHHhhhhcccc-CCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 041408 39 RSRTHKQKPQQQHIIILSLLFQMDDH-QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQ 117 (425)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~ 117 (425)
..+.+...+.....++...-.-.+.. .+.+++.+|-|-||...+-.||++||||+||+.||++.++. ...||.|+.
T Consensus 50 p~~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---~~~cp~Cr~ 126 (398)
T KOG4159|consen 50 PNRCINEDPGKSSEETMADSTPKALLSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---ETECPLCRD 126 (398)
T ss_pred CHHHHhcccchhhhhhhhhhhhhhhhccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---CCCCccccc
Confidence 44555555555554444333322222 35678999999999999999999999999999999997775 378999998
Q ss_pred CCCCCC----CCCccHHHHHHHHHHHHc
Q 041408 118 PLPKDL----DLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 118 ~l~~~~----~l~pn~~l~~~I~~~~~~ 141 (425)
++.... ...+|+.+..+|..|+..
T Consensus 127 ~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 127 ELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 885311 122355556777777653
No 70
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.94 E-value=9e-06 Score=53.92 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++++..++++|+||+|+++|.+. +..+++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 56899999999999999999976 99999999999999974
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0025 Score=66.94 Aligned_cols=243 Identities=12% Similarity=0.106 Sum_probs=173.4
Q ss_pred HHHHHHHHHh----cChhHHHHHHHHHHHHhhhch------hhh----------hHHh-hcCcHHHHHHHHhhcccCCCc
Q 041408 160 LQIIKLIKDI----WKPELQTKTLIQLEVFAAENE------RNR----------KCMA-EAGVPRAMLTYIVNCCDKNQV 218 (425)
Q Consensus 160 ~~i~~lv~~l----~s~~~~~~Al~~L~~la~~~~------~~r----------~~i~-~~G~i~~Lv~lL~s~~~~~~~ 218 (425)
.++.+++..| .+++...-++..+..+...++ ..+ +.++ ..+-|..|+.++...+-
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF---- 136 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF---- 136 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch----
Confidence 4566777776 456777778888887765442 111 2222 35889999999876654
Q ss_pred ccHHHHHHHHHhcC-CChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHH
Q 041408 219 GGLEGALSILHFFK-ITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIF 297 (425)
Q Consensus 219 ~~~~~Al~~L~~L~-~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i 297 (425)
.++..|+.+|..+- ....+.+.++-..|-+|..++.+|.. ...-+|..++-.|..|..++...+.++.-.+++
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D------srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaF 210 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD------SREPIRNEAILLLSELVKDNSSIQKLVAFENAF 210 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh------hhhhhchhHHHHHHHHHccCchHHHHHHHHHHH
Confidence 44899999888754 33444455544457899999999985 566688899999999999999888877777899
Q ss_pred HHHHHHhccc--cCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhcc--CC----------cchHHHHHHH
Q 041408 298 QNIIRVLKQR--VIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTA--SE----------KKTTELILGI 362 (425)
Q Consensus 298 ~~Lv~lL~~~--~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~--~~----------~~~~e~Al~~ 362 (425)
..|+.++... .+..-+.+.++..|-||-. +..|+..+-+.+.||.|.++|... ++ ......|+.+
T Consensus 211 erLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqi 290 (970)
T KOG0946|consen 211 ERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQI 290 (970)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHH
Confidence 9999999754 1223578999999999987 668999999999999999988542 12 1233567788
Q ss_pred HHHHhCCH------hhHHHHhhccccHHHHHHHHhcC--ChHHHHHHHHHHHHHhccC
Q 041408 363 LFHLCSCA------DGRAQFLSHRAAIAVVTKRIMQV--SPAADDRAILILSLICKFS 412 (425)
Q Consensus 363 L~~L~~~~------e~r~~~~~~~g~i~~Lv~ll~~~--s~~~~e~a~~~L~~l~~~~ 412 (425)
+..|+.-+ ...++++...+++..|..++++. +.+++-.++-++.++-++.
T Consensus 291 vr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 291 VRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 88887622 11223445577888998877765 4466666777777666653
No 72
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.90 E-value=0.00053 Score=71.67 Aligned_cols=219 Identities=15% Similarity=0.192 Sum_probs=143.6
Q ss_pred cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchH
Q 041408 170 WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIV 249 (425)
Q Consensus 170 ~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i 249 (425)
.++.++..|+-++..+...+++ .+... .++.+.++|.+.+. .++..|+.++..+...++....++ +..+
T Consensus 126 ~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~----~V~~~a~~~l~~i~~~~~~~~~~~---~~~~ 194 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDP----SVVSAALSLLSEIKCNDDSYKSLI---PKLI 194 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSH----HHHHHHHHHHHHHHCTHHHHTTHH---HHHH
T ss_pred CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcc----hhHHHHHHHHHHHccCcchhhhhH---HHHH
Confidence 3467888898888888766554 22223 68899999976654 448889999988811222111222 1466
Q ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC
Q 041408 250 ESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR 329 (425)
Q Consensus 250 ~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~ 329 (425)
..|..++.. .++..+...+.+|..++..+...... ..+++.+..+|.+. ++.+.-.++.++..+.....
T Consensus 195 ~~L~~~l~~------~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 195 RILCQLLSD------PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp HHHHHHHTC------CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH
T ss_pred HHhhhcccc------cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH
Confidence 666666665 78888888888888877654433211 35788888888877 78888888888888777554
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHh-cCChHHHHHHHHHHHHH
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIM-QVSPAADDRAILILSLI 408 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~-~~s~~~~e~a~~~L~~l 408 (425)
.-..++++|+.+|.+. +..++-.++..|..++... ...+ . .....+..+. ..+...+..++.+|..+
T Consensus 264 -----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~--~~~v-~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN--PPAV-F---NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp -----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC--HHHH-G---THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc--chhh-h---hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 3345778888888864 7778888888888887743 2333 2 1223333344 44667788888888888
Q ss_pred hccCCChHHHHHHhh
Q 041408 409 CKFSGNFNFVVQEMS 423 (425)
Q Consensus 409 ~~~~~~~~~~v~e~~ 423 (425)
+....- ..++.|..
T Consensus 332 ~~~~n~-~~Il~eL~ 345 (526)
T PF01602_consen 332 ANESNV-KEILDELL 345 (526)
T ss_dssp --HHHH-HHHHHHHH
T ss_pred ccccch-hhHHHHHH
Confidence 876544 55666653
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.90 E-value=6.5e-06 Score=77.76 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=51.6
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC---CCCCCccHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK---DLDLTPNHTLRRLIQ 136 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~---~~~l~pn~~l~~~I~ 136 (425)
++-...+|++|..+|.|+.++ .|=|||||+||-+|+... .+||.|+..+.. ...+.++..+..++-
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~---~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES---KYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh---ccCCccceeccCccccccCCcchHHHHHHH
Confidence 566778999999999999987 699999999999999984 799999866543 123455556655543
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7.6e-06 Score=81.53 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=56.9
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCCCCCCCcc----HHHHHHHHHHHHcC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN--NNAECPVTKQPLPKDLDLTPN----HTLRRLIQAWCADN 142 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~~l~~~~~l~pn----~~l~~~I~~~~~~n 142 (425)
.+.+..||||.....-|+.+.|||.||=.||-+||..+. +...||.|+..+.. .++.|- ..-++.++..+..|
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~-kdl~pv~~e~~qkke~l~~~~~~n 261 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL-KDLLPVFIEDDQKKEELKLHQDPN 261 (513)
T ss_pred cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc-cceeeeeeccccccHHHHHHhccc
Confidence 344789999999999999999999999999999998653 46789999987765 444442 22234466677777
Q ss_pred C
Q 041408 143 S 143 (425)
Q Consensus 143 ~ 143 (425)
+
T Consensus 262 g 262 (513)
T KOG2164|consen 262 G 262 (513)
T ss_pred C
Confidence 6
No 75
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.88 E-value=0.00066 Score=75.59 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=105.4
Q ss_pred HHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
.+..|+..|.+ +.++..|+..|..+. ..++++.|+..|.+.+. .++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~----~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAA----AVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcc---
Confidence 34455555543 466777777775542 23567888888866554 34777777776653110
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc------------hhHhhc----chhHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS------------KFLQRL----KPQIFQNIIR 302 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~------------~~~~~~----~~g~i~~Lv~ 302 (425)
...+.|...|++ .++.+|..|+.+|..+...+.. ....++ .-+..+.|..
T Consensus 684 --------~~~~~L~~~L~~------~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~ 749 (897)
T PRK13800 684 --------PPAPALRDHLGS------PDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAG 749 (897)
T ss_pred --------CchHHHHHHhcC------CCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHH
Confidence 112334445554 5556666665555443211000 000000 0001123334
Q ss_pred HhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhcccc
Q 041408 303 VLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAA 382 (425)
Q Consensus 303 lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~ 382 (425)
++.+. ++.+|..++.+|..+... +.+.++.|..++.+. ++.++..|+.+|..+.... ..
T Consensus 750 ~l~D~--~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~ 808 (897)
T PRK13800 750 AATDE--NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DD 808 (897)
T ss_pred HhcCC--CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hh
Confidence 44444 444555555544444321 122367788888775 7778888888777663321 12
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 383 IAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 383 i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
++.|+..|...+..++..|+.+|..+..
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 3456776666677888888888887754
No 76
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00064 Score=74.02 Aligned_cols=220 Identities=13% Similarity=0.120 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh-HHHHhhhhchhchHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS-EYMKLSAFEIDKIVES 251 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~-~~~~~~v~~~~g~i~~ 251 (425)
..+..|+-+|..++.++.+...... ..+++.++..|.+++ +.++-.|+.+++.++.+= +...+...+ -.++.
T Consensus 363 ~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dph----prVr~AA~naigQ~stdl~p~iqk~~~e--~l~~a 435 (1075)
T KOG2171|consen 363 KERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPH----PRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPA 435 (1075)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCC----HHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHH
Confidence 5567788999999888765433321 245555555565543 466899999999998642 222222222 46778
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHHhCCCCCc
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLDACPSGRN 330 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L~~~~~n 330 (425)
|+..+.+ .+++.++.+|+.+|.|++.........-.-.+++..++.+| .++ ++.+++.++.+|...+...+.
T Consensus 436 L~~~ld~-----~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 436 LIALLDS-----TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHhcc-----cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhh
Confidence 9999987 58999999999999999887765555433345666444444 455 899999999999998874432
Q ss_pred --hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC--CHhhHHHHhhccccHHHHHHHHhcC-------ChHHHH
Q 041408 331 --RMIMVESGAVFELIELELTASEKKTTELILGILFHLCS--CADGRAQFLSHRAAIAVVTKRIMQV-------SPAADD 399 (425)
Q Consensus 331 --~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~--~~e~r~~~~~~~g~i~~Lv~ll~~~-------s~~~~e 399 (425)
...+ .-.+|.|...|.+..+.+.++..-.++..+.. ..-|+.++.... .-+++++... +...++
T Consensus 509 ~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~~~~~~~dd~~~s 583 (1075)
T KOG2171|consen 509 KFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQGSDQDDDDPLRS 583 (1075)
T ss_pred hhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhcccchhhccccHH
Confidence 2222 23678899999876445555555555444443 345777776533 3555555443 234466
Q ss_pred HHHHHHHHHhcc
Q 041408 400 RAILILSLICKF 411 (425)
Q Consensus 400 ~a~~~L~~l~~~ 411 (425)
+....-..+|+-
T Consensus 584 y~~~~warmc~i 595 (1075)
T KOG2171|consen 584 YMIAFWARMCRI 595 (1075)
T ss_pred HHHHHHHHHHHH
Confidence 777777778774
No 77
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.87 E-value=9.8e-05 Score=61.38 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=100.0
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
+.+..||.-.... .+.++++....-|.|++..+-|-..+.+..++...|+-|... +..+++-+.+.|+|+|....+.+
T Consensus 16 ~Ylq~LV~efq~t-t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTT-TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence 5678888888765 478899999999999999999999999999999999999886 88999999999999999999988
Q ss_pred HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCCh
Q 041408 375 QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
-|++ ++|+|..+..+.+.....--.|+..|..|+-.+...
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~ 133 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE 133 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch
Confidence 8876 778988888665545555567888888888776664
No 78
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.2e-05 Score=73.77 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHH-HHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEH-WLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~-~~~~~~~~~~cP~~~~~l~~ 121 (425)
..+|.|+||.+.+.+|+-++|||.||=.||-. |..+. ...||.||+...+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k--~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK--YEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhc--cccCchhhhhccc
Confidence 56899999999999999999999999999999 77764 4679999977654
No 79
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.82 E-value=0.0012 Score=67.99 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFEL 343 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~L 343 (425)
.+......|+-.+.+++..-..-..-..+..++.+||++|.++ +..++..++.+|+||.. ..+-+..+++.|+|..+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4555666666666666543221111122346789999999998 88999999999999997 77899999999999999
Q ss_pred HHHhhccCCcchHHHHHHHHHHHhCCH-hhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCC
Q 041408 344 IELELTASEKKTTELILGILFHLCSCA-DGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 344 v~lL~~~~~~~~~e~Al~~L~~L~~~~-e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~ 413 (425)
..++.+. +...+..++++|.++.-.. +.++...-..-+...++.+.-.....+||.+..+|++|.-++.
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 9999886 8888999999999998733 3333222222334455665555677999999999999976643
No 80
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.79 E-value=0.00072 Score=75.33 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=27.2
Q ss_pred HHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhc
Q 041408 165 LIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFF 231 (425)
Q Consensus 165 lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L 231 (425)
+...|. ++.++..|+..|..+.. +..+.++..|.+.+. .++..|+.+|..+
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~----~VR~~Av~aL~~~ 741 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDH----RVRIEAVRALVSV 741 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCH----HHHHHHHHHHhcc
Confidence 444453 45677777777765531 122345555554433 2366666666554
No 81
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.74 E-value=2.1e-05 Score=78.73 Aligned_cols=69 Identities=26% Similarity=0.528 Sum_probs=55.5
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc-cHHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP-NHTLRRLIQAWCA 140 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p-n~~l~~~I~~~~~ 140 (425)
.+.+++.||+|..++.||+.+ .|||.||+.||.+|... +..||.|+.++.. ....+ ...+++.+..|.-
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~-~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQ-AEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc---CcCCcccccccch-hhccCchHHHHHHHHhccc
Confidence 477889999999999999985 99999999999999987 4799999888765 44444 3455666665543
No 82
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.73 E-value=0.00033 Score=54.38 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=69.2
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
|+.|+..|.+ +.++.+|..|+.+|..+. ...+++.|+.++++. ++.++..|+.+|..+
T Consensus 1 i~~L~~~l~~-----~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i---- 58 (88)
T PF13646_consen 1 IPALLQLLQN-----DPDPQVRAEAARALGELG-----------DPEAIPALIELLKDE--DPMVRRAAARALGRI---- 58 (88)
T ss_dssp HHHHHHHHHT-----SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHhc-----CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHh----
Confidence 5788888843 289999999999997331 235799999999887 999999999999987
Q ss_pred CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHH
Q 041408 329 RNRMIMVESGAVFELIELELTASEKKTTELILGILF 364 (425)
Q Consensus 329 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~ 364 (425)
....+++.|++++.+.++..++..|+.+|.
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245689999999987645556777877764
No 83
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0068 Score=57.39 Aligned_cols=234 Identities=8% Similarity=0.088 Sum_probs=144.9
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhh
Q 041408 162 IIKLIKDIWKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLS 241 (425)
Q Consensus 162 i~~lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~ 241 (425)
+..+.+.+.+.+....|+.+|-+++. ....|+.+.+. .+..++..+.+.... .-...+.+|.||+.+++....+
T Consensus 46 lk~l~qL~~~~~~~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~----lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 46 LKDLTQLLKDLDPAEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSP----LADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred HHHHHHHccCcccccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccc----hHHHHHHHHHHhccCchHHHHH
Confidence 44455555444336678888888874 55666776666 666666666554322 2567788999999888765544
Q ss_pred hhc-h----hchHHHHHHHHccccccccCCH-HHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH-H
Q 041408 242 AFE-I----DKIVESFTWVLALDDESIENHK-EIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG-I 314 (425)
Q Consensus 242 v~~-~----~g~i~~Lv~lL~~~~~~~~~~~-~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~-~ 314 (425)
... . .|.+...+...++ +.+. ..-..-+.++.|++.....+.......-+...-+.-+.+. +..+ +
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~-----~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--~s~vRr 192 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDK-----SYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--DSQVRR 192 (353)
T ss_pred HHhcccccccchHHHHHHHhCc-----ccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--chhhhc
Confidence 332 1 3667777777775 2332 2235678899999988877776544332211111222222 3444 4
Q ss_pred HHHHHHHHHhCCCCCchHHHHh--hCchHHHHH---------------------Hhhc----cCCcchHHHHHHHHHHHh
Q 041408 315 NAALKLMLDACPSGRNRMIMVE--SGAVFELIE---------------------LELT----ASEKKTTELILGILFHLC 367 (425)
Q Consensus 315 ~~A~~aL~~L~~~~~n~~~iv~--~G~v~~Lv~---------------------lL~~----~~~~~~~e~Al~~L~~L~ 367 (425)
...+.+|.|.|....+...+.. ..++|.++- +|.. .+++.+...-+.+|..||
T Consensus 193 ~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc 272 (353)
T KOG2973|consen 193 GGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC 272 (353)
T ss_pred cchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH
Confidence 4668899999998877777765 234444332 2211 136778888999999999
Q ss_pred CCHhhHHHHhhccccHHHHHHHHhcC--ChHHHHHHHHHHHHHhc
Q 041408 368 SCADGRAQFLSHRAAIAVVTKRIMQV--SPAADDRAILILSLICK 410 (425)
Q Consensus 368 ~~~e~r~~~~~~~g~i~~Lv~ll~~~--s~~~~e~a~~~L~~l~~ 410 (425)
....||+.+.. . |+..+++.+.++ .+++.+.+-.+.-.|-+
T Consensus 273 aT~~GRe~lR~-k-gvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 273 ATRAGREVLRS-K-GVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hhhHhHHHHHh-c-CchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 99999999976 3 456777767766 44555444444444444
No 84
>PF05536 Neurochondrin: Neurochondrin
Probab=97.70 E-value=0.0017 Score=68.00 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=111.2
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH---HhhhhchhchHHHHHHHHcccccccc-CCHHHHHHHHHHH
Q 041408 202 PRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM---KLSAFEIDKIVESFTWVLALDDESIE-NHKEIKSHALRIL 277 (425)
Q Consensus 202 i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~---~~~v~~~~g~i~~Lv~lL~~~~~~~~-~~~~~~~~A~~~L 277 (425)
+..-+++|++.++.. +-.++..+..+..+++.. ++.|.+. =+.+.+-++|++..-.-+ .....+.-|+.+|
T Consensus 7 l~~c~~lL~~~~D~~----rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 7 LEKCLSLLKSADDTE----RFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHhccCCcHH----HHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 444556666655322 555566666666554421 1223332 235778888875210001 2245677889999
Q ss_pred HHHHhcccchhHhhcchhHHHHHHHHhccccCCh-HHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchH
Q 041408 278 KNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQ-QGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTT 356 (425)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 356 (425)
..+|..++....--. .+-||.|++++..+ +. .....+..+|..++.+++++..+++.|+|+.|++.+.+ .+...
T Consensus 82 ~~f~~~~~~a~~~~~-~~~IP~Lle~l~~~--s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~ 156 (543)
T PF05536_consen 82 AAFCRDPELASSPQM-VSRIPLLLEILSSS--SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQM 156 (543)
T ss_pred HHHcCChhhhcCHHH-HHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchH
Confidence 999986554322111 25699999999887 55 89999999999999999999999999999999999986 56778
Q ss_pred HHHHHHHHHHhCCH
Q 041408 357 ELILGILFHLCSCA 370 (425)
Q Consensus 357 e~Al~~L~~L~~~~ 370 (425)
+.|+.+|.+++...
T Consensus 157 E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 157 EIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998743
No 85
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.69 E-value=4.1e-05 Score=57.71 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=34.1
Q ss_pred CCCcccCcCCccCCCCc------------e-ecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDP------------V-TAITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dP------------V-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
+.++- |+||++.|.|| + ..+|||.|-..||.+|+..+ .+||.||
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---NTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---SB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---CcCCCCC
Confidence 33443 99999999444 3 44899999999999999875 6999996
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.68 E-value=9.1e-05 Score=72.26 Aligned_cols=51 Identities=25% Similarity=0.591 Sum_probs=45.5
Q ss_pred ccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 73 FICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
+.|.|++++-++||+.+ +||.|+|+.|++|..++ ..||.+++|++. +++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~---G~DPIt~~pLs~-eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET---GKDPITNEPLSI-EELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc---CCCCCCCCcCCH-HHeee
Confidence 57999999999999985 99999999999999985 589999999986 66655
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.68 E-value=0.0051 Score=60.53 Aligned_cols=227 Identities=10% Similarity=0.070 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESF 252 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~L 252 (425)
+-..-+.++|..+.. -+++|..++.++++..++..|.+. ..+...+-..+-.+..|+.++.-...+ .. .+.|+.|
T Consensus 172 ~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~~ae~~-~~-~~li~~L 246 (442)
T KOG2759|consen 172 DYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPHAAEKL-KR-FDLIQDL 246 (442)
T ss_pred chHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHHHHHHH-hh-ccHHHHH
Confidence 455667778887764 678999999999999999999633 233456777888888888877655444 43 3899999
Q ss_pred HHHHccccccccCCHHHHHHHHHHHHHHHhcccchh------HhhcchhHHHHHHHHhcccc-CChHHHHHH-------H
Q 041408 253 TWVLALDDESIENHKEIKSHALRILKNIIQAASSKF------LQRLKPQIFQNIIRVLKQRV-IAQQGINAA-------L 318 (425)
Q Consensus 253 v~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~------~~~~~~g~i~~Lv~lL~~~~-~~~~~~~~A-------~ 318 (425)
+.+++. .....+-+-.+.++.|++...+.+. ..++. +-++.-++.|..+. .|++....- -
T Consensus 247 ~~Ivk~-----~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 247 SDIVKE-----STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999996 2445566778899999988774222 22333 33566677775542 233333221 1
Q ss_pred HHHHHhCCCC------------------------CchHHHHh--hCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHh
Q 041408 319 KLMLDACPSG------------------------RNRMIMVE--SGAVFELIELELTASEKKTTELILGILFHLCS-CAD 371 (425)
Q Consensus 319 ~aL~~L~~~~------------------------~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e 371 (425)
.-.-.||+.+ +|...+-+ -..+..|+.+|....|+...-.|+.=+..... .++
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 1122233221 25555654 46788999999887567777788888888876 889
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
|+..+ +..||=..++++|.+.++.++.+|+.++-.|-.+
T Consensus 401 gk~vv-~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 401 GKAVV-EKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HhHHH-HHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99877 6688999999988888999999999999877654
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0059 Score=60.34 Aligned_cols=228 Identities=11% Similarity=0.143 Sum_probs=155.1
Q ss_pred HHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh------H---HHHhhhhchhch
Q 041408 178 TLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS------E---YMKLSAFEIDKI 248 (425)
Q Consensus 178 Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~------~---~~~~~v~~~~g~ 248 (425)
.+..+..+| .-|.--..+++.++|+.|+.+|.+.+.++ .-..+.+|..|+..+ + .......+ +++
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI----~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~v 177 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDI----AIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQV 177 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchh----HHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccH
Confidence 445555555 34666667889999999999999887654 455567777776432 1 12222222 278
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS- 327 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~- 327 (425)
++.||.-+....|+.........++..++.|+....+.....+.+.|.+..|+.-+.....-..-+..|...|.-+-.+
T Consensus 178 laLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 178 LALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 8888888876444444445556677899999998887777666667999998886654411234566777777776664
Q ss_pred CCchHHHHhhCchHHHHHHhhc---c-----CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHH
Q 041408 328 GRNRMIMVESGAVFELIELELT---A-----SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADD 399 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~---~-----~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e 399 (425)
++|+.....-.+|..++.-+.- . +..+..+.-...|+.+...++||..+.... |+ .|..++++.-...+.
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~E-Gl-qLm~Lmlr~Kk~sr~ 335 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGE-GL-QLMNLMLREKKVSRG 335 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccc-cH-HHHHHHHHHHHHhhh
Confidence 4599998898999998887732 1 124566777778888888999999998744 45 666666655444556
Q ss_pred HHHHHHHHHhccCC
Q 041408 400 RAILILSLICKFSG 413 (425)
Q Consensus 400 ~a~~~L~~l~~~~~ 413 (425)
.++.+|-....+..
T Consensus 336 SalkvLd~am~g~~ 349 (536)
T KOG2734|consen 336 SALKVLDHAMFGPE 349 (536)
T ss_pred hHHHHHHHHHhCCC
Confidence 67788866655433
No 89
>PF05536 Neurochondrin: Neurochondrin
Probab=97.65 E-value=0.00077 Score=70.53 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=114.7
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccch----hHhhcchhHHHHHHHHhcccc-----CChHHHHHHH
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSK----FLQRLKPQIFQNIIRVLKQRV-----IAQQGINAAL 318 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~----~~~~~~~g~i~~Lv~lL~~~~-----~~~~~~~~A~ 318 (425)
.++..+.+|++ .+.+.|=.+..++.+++..++.. ..+...-| .+.|-+||+.++ .....+.-|+
T Consensus 6 ~l~~c~~lL~~------~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 6 SLEKCLSLLKS------ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHHHhcc------CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 45566677776 55445556667777777655421 12332234 588888998751 1345677899
Q ss_pred HHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 319 KLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 319 ~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
..|..+|..++ .-..++ +.||.|++.+...++..+...++.+|..++..++|++.++. .|+++.|.+.+.+ ++.
T Consensus 79 svL~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-Ccc
Confidence 99999999665 335555 58999999998873448999999999999999999999987 6789999997766 667
Q ss_pred HHHHHHHHHHHHhccCC
Q 041408 397 ADDRAILILSLICKFSG 413 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~ 413 (425)
..+.|+.+|.+++....
T Consensus 155 ~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLG 171 (543)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 78999999999887655
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.63 E-value=3.4e-05 Score=51.14 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=35.0
Q ss_pred chhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 189 NERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 189 ~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
+++++..+++.|+||.|+.+|.+.+. .+++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~----~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP----EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH----HHHHHHHHHHHHHh
Confidence 46789999999999999999986654 44999999999986
No 91
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.60 E-value=0.0031 Score=65.90 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=163.6
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHH
Q 041408 126 TPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPR 203 (425)
Q Consensus 126 ~pn~~l~~~I~~~~~~n~~~~~~~~p~~~~~~~~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~ 203 (425)
..|...|++.--+...-.... +..-.--+..+.+.+.+ +..+.-|++.|..+. +++... -.++
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~--------~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~ 117 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHED--------PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIP 117 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTS--------HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHH
Confidence 566778888776665433111 00000122344455544 467888999998886 233222 2477
Q ss_pred HHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc
Q 041408 204 AMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA 283 (425)
Q Consensus 204 ~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~ 283 (425)
.+.++|.+++. .++..|+.++..+...++ ..+.. +.++.+..+|.. .++.++..|+.++..+ ..
T Consensus 118 ~v~~ll~~~~~----~VRk~A~~~l~~i~~~~p---~~~~~--~~~~~l~~lL~d------~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 118 DVIKLLSDPSP----YVRKKAALALLKIYRKDP---DLVED--ELIPKLKQLLSD------KDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHHHHHHSSSH----HHHHHHHHHHHHHHHHCH---CCHHG--GHHHHHHHHTTH------SSHHHHHHHHHHHHHH-HC
T ss_pred HHHHHhcCCch----HHHHHHHHHHHHHhccCH---HHHHH--HHHHHHhhhccC------CcchhHHHHHHHHHHH-cc
Confidence 78888877654 458889888888754322 23332 268899999976 8899999999999999 21
Q ss_pred ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHH
Q 041408 284 ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGIL 363 (425)
Q Consensus 284 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L 363 (425)
++.... -.-...+..|.+++... ++-.+...++.|..++........ +...++.+..+|.+. ++.+.-.+..++
T Consensus 182 ~~~~~~-~~~~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~-~~~V~~e~~~~i 255 (526)
T PF01602_consen 182 NDDSYK-SLIPKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSS-SPSVVYEAIRLI 255 (526)
T ss_dssp THHHHT-THHHHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred Ccchhh-hhHHHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 111101 11134566666666677 899999999999998875433221 056788899999876 778888888999
Q ss_pred HHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 364 FHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 364 ~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
..+..... +. ..+++.|++++.+.++..+..++..|..++...
T Consensus 256 ~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 256 IKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 88887665 22 246789999888667789999999999998875
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.58 E-value=0.0029 Score=62.97 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=158.3
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
+.+.+..+.+.+|++.. +...-+.+.+.+.=-.++..|...... ...++.|+..+..+......... +. .|++.
T Consensus 38 ~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~-~~--~~vvr 111 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKE-IP--RGVVR 111 (371)
T ss_pred cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCccc-CC--HHHHH
Confidence 35777888888888874 456667777777666677777654432 13478899888766433211112 22 28999
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCc
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRN 330 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n 330 (425)
.+|.+..+ .+...+..|..+|..++-.+..- +...|++..|++.+-++ ..+..+..+.++..+-.++..
T Consensus 112 alvaiae~------~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 112 ALVAIAEH------EDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDG--SFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred HHHHHHhC------CchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhCCcch
Confidence 99999987 67788999999999999877633 33457899999999988 777888999999999999988
Q ss_pred hHHHHhhCchHHHHHHhhcc------CCc--chHHHHHHHHHHHhCCHhhHHHHhhcc-ccHHHHHHHHhcCChHHHHHH
Q 041408 331 RMIMVESGAVFELIELELTA------SEK--KTTELILGILFHLCSCADGRAQFLSHR-AAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~------~~~--~~~e~Al~~L~~L~~~~e~r~~~~~~~-g~i~~Lv~ll~~~s~~~~e~a 401 (425)
|..+...--+..++.-..+. ++. +....+..++..+-.+-.|--.+.... .|+..|++.|...++..++..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 88765532333333333221 122 345566677777777777777665444 689999998888888899999
Q ss_pred HHHHHHHhc
Q 041408 402 ILILSLICK 410 (425)
Q Consensus 402 ~~~L~~l~~ 410 (425)
+.+|..+-.
T Consensus 261 ldll~dllr 269 (371)
T PF14664_consen 261 LDLLFDLLR 269 (371)
T ss_pred HHHHHHHHC
Confidence 999887755
No 93
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.57 E-value=0.0028 Score=65.42 Aligned_cols=153 Identities=10% Similarity=0.118 Sum_probs=110.2
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
+......|+-.+..++..-..-|.-+....++..|+++|..+.. .+...++++|.|+...=...+..+..+ |+|+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~----~i~~~~lgai~NlVmefs~~kskfl~~-ngId 464 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI----MIMGITLGAICNLVMEFSNLKSKFLRN-NGID 464 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch----hHHHHHHHHHHHHHhhcccHHHHHHHc-CcHH
Confidence 44555666666666665444445555567889999999965543 448889999999875433333333333 8999
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhH-HHHHHHHhccccCChHHHHHHHHHHHHhCCC-C
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQI-FQNIIRVLKQRVIAQQGINAALKLMLDACPS-G 328 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~ 328 (425)
.+...+.. .+...+..+.|+|+++..+.++.........+ -..++.+..++ ++.+++.++..|+||.-+ .
T Consensus 465 ~l~s~~~~------~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 465 ILESMLTD------PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHhcC------CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhcCcH
Confidence 99999987 88999999999999999988877665443333 24566666777 999999999999999764 4
Q ss_pred CchHHHHh
Q 041408 329 RNRMIMVE 336 (425)
Q Consensus 329 ~n~~~iv~ 336 (425)
+....+++
T Consensus 537 ~svdfll~ 544 (678)
T KOG1293|consen 537 KSVDFLLE 544 (678)
T ss_pred HHHHHHHH
Confidence 55555555
No 94
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.009 Score=65.37 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhh--cCcHHHHHHHHhhcccC--------CC----cccHHHHHHHHHhcCCChHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAE--AGVPRAMLTYIVNCCDK--------NQ----VGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~--------~~----~~~~~~Al~~L~~L~~~~~~~ 238 (425)
..+..|+..|..+++..+...+.... .-.++.++.++.....+ .+ ...-..|..+|..++.+=..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g- 342 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG- 342 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-
Confidence 56777888887777654433332222 23445555555332111 00 01133455666655543211
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+.+. +-+.+.+-.+|++ .++..|..|..+|..++.+-.... .+.-..+++..+..|+++ .|.+|-+|+
T Consensus 343 -~~v~--p~~~~~l~~~l~S------~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~Dp--hprVr~AA~ 410 (1075)
T KOG2171|consen 343 -KQVL--PPLFEALEAMLQS------TEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLNDP--HPRVRYAAL 410 (1075)
T ss_pred -hheh--HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCCC--CHHHHHHHH
Confidence 1122 1356777778887 889999999999988887655333 233346778888888888 999999999
Q ss_pred HHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHH-----HHhc
Q 041408 319 KLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTK-----RIMQ 392 (425)
Q Consensus 319 ~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~-----ll~~ 392 (425)
.++..++.+ .....+-...-++|.|+..+.+..+..++..|+.+|.|....-.+ ..+ + .-++.|++ ++.+
T Consensus 411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l-~--pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SIL-E--PYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHH-H--HHHHHHHHHHHHHHhcC
Confidence 999999984 344444455567789999998865778999999999988763221 222 2 23444444 3335
Q ss_pred CChHHHHHHHHHHHHHhccCCC
Q 041408 393 VSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+++.+++.++.+|..++.-.++
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 5789999999999888765443
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.47 E-value=7.9e-05 Score=70.65 Aligned_cols=54 Identities=22% Similarity=0.517 Sum_probs=42.9
Q ss_pred CCCcccCcCCccCCCC---ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 69 IPEYFICPISLQIMKD---PVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~d---PV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
-...|.||||+..|.. -|.+ +|||.|+..+|++.- . ...||.|+.+|.. .++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~---~~~Cp~c~~~f~~-~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K---SKKCPVCGKPFTE-EDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c---cccccccCCcccc-CCEEE
Confidence 4667999999999954 3434 999999999999984 2 2579999999986 55553
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0084 Score=64.88 Aligned_cols=227 Identities=13% Similarity=0.002 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHh--cCCChHHHHhhhhchhchHHH
Q 041408 174 LQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHF--FKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 174 ~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~--L~~~~~~~~~~v~~~~g~i~~ 251 (425)
-+..||.-|..+-.-.+=....-...|+.|.++++|++...+ ....+..+.. |+.+..-+..++.+ ++-..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~E-----LrpiLVFIWAKILAvD~SCQ~dLvKe--~g~~Y 558 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARE-----LRPILVFIWAKILAVDPSCQADLVKE--NGYKY 558 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHh-----hhhhHHHHHHHHHhcCchhHHHHHhc--cCcee
Confidence 344455555444322222222233469999999999887543 4445544443 56666556677776 34445
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCc
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRN 330 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n 330 (425)
++.+|..+ -.-+++.|.-|+.+|..++.+-..-+....+.++|...+..|.++ ..+-.+.-.+-+|..|=. ++.+
T Consensus 559 F~~vL~~~---~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~-~~pLLrQW~~icLG~LW~d~~~A 634 (1387)
T KOG1517|consen 559 FLQVLDPS---QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD-PEPLLRQWLCICLGRLWEDYDEA 634 (1387)
T ss_pred EEEEecCc---CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhhhcchh
Confidence 55555431 024578899999999999988666666777888999999999885 146788888888888765 5677
Q ss_pred hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-----HhhHHHH----------hhccccHH----HHHHHHh
Q 041408 331 RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-----ADGRAQF----------LSHRAAIA----VVTKRIM 391 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-----~e~r~~~----------~~~~g~i~----~Lv~ll~ 391 (425)
|-.=++.++...|+.+|.+. -+++...|+-||..+... ++....+ ...+..++ .++.++.
T Consensus 635 rw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs 713 (1387)
T KOG1517|consen 635 RWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS 713 (1387)
T ss_pred hhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh
Confidence 77778899999999999875 789999999999998874 2222222 00112222 5666677
Q ss_pred cCChHHHHHHHHHHHHHhccC
Q 041408 392 QVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 392 ~~s~~~~e~a~~~L~~l~~~~ 412 (425)
.+|+.++...+-+|..+..+.
T Consensus 714 dgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 714 DGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccchHHHHHHHHHHHHHHHhh
Confidence 778877777777776665543
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.059 Score=53.51 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=157.5
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhc-----h----hhhhHHhhcCcHHHHHHHHhhcccCC--CcccHHHHH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAEN-----E----RNRKCMAEAGVPRAMLTYIVNCCDKN--QVGGLEGAL 225 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~-----~----~~r~~i~~~G~i~~Lv~lL~s~~~~~--~~~~~~~Al 225 (425)
.+++..++..|+ ++++....+.-|+.++..+ . .-..++++.++++.|++-+..-+.+. .......++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 466778888884 4677788888888887653 1 23567788899999999987654332 112367788
Q ss_pred HHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhccc-chhHhhcchhHHHHHHHHh
Q 041408 226 SILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAAS-SKFLQRLKPQIFQNIIRVL 304 (425)
Q Consensus 226 ~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~Lv~lL 304 (425)
+++-|+..-.+.....+.+. |.+.-|..-+... ..-..-+..|..+|.-+...+. ++...+- -.+|..|++-+
T Consensus 204 ~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k----~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~l 277 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGK----AAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQL 277 (536)
T ss_pred HHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcc----cCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhc
Confidence 88888876555544444443 5555444433320 0112245678888888776665 4444443 34577777776
Q ss_pred c----cccCC---hHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh---hHH
Q 041408 305 K----QRVIA---QQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD---GRA 374 (425)
Q Consensus 305 ~----~~~~~---~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e---~r~ 374 (425)
. .++.+ .+..++-..+|+.+-..+.|+..++...++....-++.. .....-.|+.+|-.....++ ++.
T Consensus 278 a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am~g~~gt~~C~ 355 (536)
T KOG2734|consen 278 AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAMFGPEGTPNCN 355 (536)
T ss_pred chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHHhCCCchHHHH
Confidence 3 11112 245667777888888899999999998888766666654 45567788999999887554 666
Q ss_pred HHhhccccHHHHHHHHhc---------CC-hHHHHHHHHHHHHHhc
Q 041408 375 QFLSHRAAIAVVTKRIMQ---------VS-PAADDRAILILSLICK 410 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll~~---------~s-~~~~e~a~~~L~~l~~ 410 (425)
++++ .+|+....-+..+ .+ ....++..++||.+-.
T Consensus 356 kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 356 KFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7766 5566666554332 12 2445778888877755
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.29 E-value=0.0026 Score=58.92 Aligned_cols=175 Identities=17% Similarity=0.119 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHhhhc--hhhhhHHhhc--CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhch
Q 041408 173 ELQTKTLIQLEVFAAEN--ERNRKCMAEA--GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKI 248 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~--~~~r~~i~~~--G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~ 248 (425)
..+.+|+..|+.+..++ ......+.+. ..++.++..+.+... .+...|+.++..++..-...-....+ .+
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~~A~~~l~~l~~~l~~~~~~~~~--~~ 95 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS----KVSKTACQLLSDLARQLGSHFEPYAD--IL 95 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhHhHHHHHH--HH
Confidence 67899999999998877 3333333321 455566666655543 33777888888776432222111222 58
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhH-HHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQI-FQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
+|.|+..+.+ ++..++..|..+|..++..-.. ...+ ++.+...+.+. ++.+|..++..|..+...
T Consensus 96 l~~Ll~~~~~------~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 96 LPPLLKKLGD------SKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSK--NPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcc------ccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH
Confidence 8889998887 7788899999999998874330 1123 56666677777 999999999999887653
Q ss_pred CC-chHHHHh----hCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 328 GR-NRMIMVE----SGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 328 ~~-n~~~iv~----~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
-. +...+-. ..+++.+...+.+. ++++++.|-.++..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYS 206 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHH
Confidence 22 1111111 34778888888876 89999999999999865
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.29 E-value=0.00069 Score=52.54 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=65.7
Q ss_pred HHHHHHHh-ccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHH
Q 041408 297 FQNIIRVL-KQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQ 375 (425)
Q Consensus 297 i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~ 375 (425)
||.|++.| .++ ++.+|..|+.+|..+- ...++|.|++++.+. ++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~--~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP--DPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSS--SHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCC--CHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence 68899999 666 9999999999999431 225699999999775 8999999999998771
Q ss_pred HhhccccHHHHHHHHhcCC-hHHHHHHHHHH
Q 041408 376 FLSHRAAIAVVTKRIMQVS-PAADDRAILIL 405 (425)
Q Consensus 376 ~~~~~g~i~~Lv~ll~~~s-~~~~e~a~~~L 405 (425)
...+++.|.+++.+.+ ..++..|+.+|
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1336889999777654 45688888876
No 100
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.27 E-value=0.0059 Score=52.82 Aligned_cols=123 Identities=8% Similarity=0.098 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhccccC----ChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccC-CcchHHHHHHHHHHHh
Q 041408 293 KPQIFQNIIRVLKQRVI----AQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTAS-EKKTTELILGILFHLC 367 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~----~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~e~Al~~L~~L~ 367 (425)
+.|++..|++++.++.. ....-..++.++..|-.++-.--..+..-.|.-.+..+.... +..+...|+++|.+++
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 44678999999998821 135666788888888776653344556667777777776543 6789999999999999
Q ss_pred CCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCCh
Q 041408 368 SCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 368 ~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
.+.......+...--++.|+..|...+...|.+|++++-+|..++++.
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 977776666677788999999998888899999999999998887774
No 101
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0066 Score=57.50 Aligned_cols=157 Identities=12% Similarity=0.168 Sum_probs=114.1
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
...+|.+|.+ .++.++..|+.-|..++.. ..+....-+.-.++.|.+++.+. .+ .+.|+.+|.|++...
T Consensus 5 l~elv~ll~~------~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 5 LVELVELLHS------LSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHHhcc------CChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHhhH
Confidence 3457888887 8899999999999998877 44443333445788999999876 44 778999999999999
Q ss_pred CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh-cc----ccHHHHHHHHhcCCh---HHHHH
Q 041408 329 RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS-HR----AAIAVVTKRIMQVSP---AADDR 400 (425)
Q Consensus 329 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~-~~----g~i~~Lv~ll~~~s~---~~~e~ 400 (425)
.-++.+... .+..++.++.+. .......++.+|.||+..+..-..+.. .. .++..+++.....+. .--.+
T Consensus 74 ~l~~~ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 74 ELRKKLLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 988888887 777777777653 456778889999999997766655532 12 356666655544332 22357
Q ss_pred HHHHHHHHhccCCChHHHH
Q 041408 401 AILILSLICKFSGNFNFVV 419 (425)
Q Consensus 401 a~~~L~~l~~~~~~~~~~v 419 (425)
.+.++.+|+++... |..+
T Consensus 152 lA~vf~nls~~~~g-R~l~ 169 (353)
T KOG2973|consen 152 LAPVFANLSQFEAG-RKLL 169 (353)
T ss_pred HHHHHHHHhhhhhh-hhHh
Confidence 88889999988766 5443
No 102
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.19 E-value=0.00064 Score=44.49 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.7
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++++..+++.|++++|+++|.+. +..++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 34788899999999999999875 89999999999999973
No 103
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0002 Score=66.73 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=40.7
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
|.|-||.+.|.+||++.|||+||..|-...+..+ ..|++|++...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~---~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG---EKCYVCSQQTH 286 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccC---Ccceecccccc
Confidence 7899999999999999999999999988888764 78999998774
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.17 E-value=0.02 Score=57.16 Aligned_cols=180 Identities=11% Similarity=0.112 Sum_probs=129.9
Q ss_pred HHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccc
Q 041408 182 LEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDE 261 (425)
Q Consensus 182 L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~ 261 (425)
|..+-+.++.-|..+.-.-..+.+..++-+.+. .++..+.+++..+..+.+..+.+... +.--.++..|..+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~----~vraa~yRilRy~i~d~~~l~~~~~l--~id~~ii~SL~~~-- 78 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSK----EVRAAGYRILRYLISDEESLQILLKL--HIDIFIIRSLDRD-- 78 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHHHcCHHHHHHHHHc--CCchhhHhhhccc--
Confidence 444444556555555444455555544434433 44888899998888777766666553 3444556666642
Q ss_pred cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchH
Q 041408 262 SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVF 341 (425)
Q Consensus 262 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~ 341 (425)
..+...|++|...++.+.........+ ..|++..+|.+..+. +...+..++.+|+.++.. |-..++++|++.
T Consensus 79 --~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~--~D~lr~~cletL~El~l~--~P~lv~~~gG~~ 150 (371)
T PF14664_consen 79 --NKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE--DDRLRRICLETLCELALL--NPELVAECGGIR 150 (371)
T ss_pred --CCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhh--CHHHHHHcCCHH
Confidence 245667899999999998875433322 458899999999987 889999999999999974 344667999999
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 342 ELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 342 ~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.|++.+.++ ...+.+..+.++..+...+..|+-+..
T Consensus 151 ~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 151 VLLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 999999885 545889999999999999999987744
No 105
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00032 Score=67.11 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhhhhccccCCCC-----CCCcccCcCCccCCCCc-------------eecCCCccccHHHHHHHHHcCCC
Q 041408 47 PQQQHIIILSLLFQMDDHQDIE-----IPEYFICPISLQIMKDP-------------VTAITGITYDRESIEHWLFQGNN 108 (425)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~Cpi~~~~m~dP-------------V~~~~g~t~~r~~I~~~~~~~~~ 108 (425)
.+.+.++.+....++.+.-+.. --.+-.|-||++-|-.| =-+||||.+--.|++.|+++.
T Consensus 257 ~i~~~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-- 334 (491)
T COG5243 257 RIREHARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-- 334 (491)
T ss_pred HHHHHHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc--
Confidence 3566667766666666553321 23456899999885444 478999999999999999984
Q ss_pred CCCCCCCCCCC
Q 041408 109 NAECPVTKQPL 119 (425)
Q Consensus 109 ~~~cP~~~~~l 119 (425)
.+||.||.|+
T Consensus 335 -QTCPICr~p~ 344 (491)
T COG5243 335 -QTCPICRRPV 344 (491)
T ss_pred -cCCCcccCcc
Confidence 7999999985
No 106
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00024 Score=66.34 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=41.1
Q ss_pred cCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.|+||++.+.-||.++|+|.||..||+--...+ ..+||.|+.|+.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd--k~~CavCR~pids 54 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKND--KKTCAVCRFPIDS 54 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcC--CCCCceecCCCCc
Confidence 499999999999999999999999999866655 4789999999965
No 107
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.15 E-value=0.0061 Score=56.43 Aligned_cols=153 Identities=11% Similarity=0.055 Sum_probs=94.1
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
++..++..+.+ .+..+...|+.++..++..-........ ..++|.|++.+.++ +...++.|..+|..++.+
T Consensus 54 ~~~~i~~~l~d------~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~ 124 (228)
T PF12348_consen 54 LLDAIIKQLSD------LRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLLKKLGDS--KKFIREAANNALDAIIES 124 (228)
T ss_dssp --HHHHH-S-H------H---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGG-----HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHH
Confidence 44556666654 5566778899999999876555443232 36899999999988 888999999999999886
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhc----cccHHHHHHHHhcCChHHHHHHHH
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSH----RAAIAVVTKRIMQVSPAADDRAIL 403 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~----~g~i~~Lv~ll~~~s~~~~e~a~~ 403 (425)
-.....+ .++.+...+.+. ++.++..++..|..+..........+.. ...++.+.+.+...++.+++.|-.
T Consensus 125 ~~~~~~~----~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~ 199 (228)
T PF12348_consen 125 CSYSPKI----LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARE 199 (228)
T ss_dssp S-H--HH----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred CCcHHHH----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5511111 134555555554 7888899999888887633311111111 234667777666778899999999
Q ss_pred HHHHHhccCCC
Q 041408 404 ILSLICKFSGN 414 (425)
Q Consensus 404 ~L~~l~~~~~~ 414 (425)
+++.+.++.++
T Consensus 200 ~~~~l~~~~~~ 210 (228)
T PF12348_consen 200 CLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHH-H
T ss_pred HHHHHHHHCCH
Confidence 99999887666
No 108
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.13 E-value=0.00058 Score=52.19 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=37.6
Q ss_pred cccCcCCccCCCC-ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKD-PVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~d-PV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+-.||.|...=.| |++. .|||.|-..||.+|+...+....||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3456666665555 7665 79999999999999986433579999998864
No 109
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.13 E-value=0.00023 Score=70.93 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN--NNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~~l~~ 121 (425)
..+..|.+|++.-.||+...|.|+|||-||.+|...-. .+-+||.|..+++-
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 34578999999999999999999999999999987422 14799999999875
No 110
>PTZ00429 beta-adaptin; Provisional
Probab=97.12 E-value=0.029 Score=60.79 Aligned_cols=173 Identities=8% Similarity=-0.035 Sum_probs=96.5
Q ss_pred HHHHHHHHhcC--hhHHHHHHHHH-HHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH
Q 041408 161 QIIKLIKDIWK--PELQTKTLIQL-EVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 161 ~i~~lv~~l~s--~~~~~~Al~~L-~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
.+..+-..|.+ ...+.++++.+ ..++.+.+. .-..+-+++++.+.+.. .+.-..-.|.+.+...++
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~e----lKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLE----LKKLVYLYVLSTARLQPE 101 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcccChH
Confidence 34444444432 35566677655 444444211 12345556666554321 233333344445443332
Q ss_pred HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHH
Q 041408 238 MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAA 317 (425)
Q Consensus 238 ~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A 317 (425)
.. + -++..+.+-+++ .|+.+|..|+++|.++-..+ .. .-+++++.+.|.+. ++-+|+.|
T Consensus 102 la--l----LaINtl~KDl~d------~Np~IRaLALRtLs~Ir~~~------i~-e~l~~~lkk~L~D~--~pYVRKtA 160 (746)
T PTZ00429 102 KA--L----LAVNTFLQDTTN------SSPVVRALAVRTMMCIRVSS------VL-EYTLEPLRRAVADP--DPYVRKTA 160 (746)
T ss_pred HH--H----HHHHHHHHHcCC------CCHHHHHHHHHHHHcCCcHH------HH-HHHHHHHHHHhcCC--CHHHHHHH
Confidence 11 1 245556666665 67777777777776553311 11 12456666677766 77888888
Q ss_pred HHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 318 LKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 318 ~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
+.++..+-..+.. .+.+.|.++.|.++|.+. ++.++..|+.+|..++.
T Consensus 161 alai~Kly~~~pe--lv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 161 AMGLGKLFHDDMQ--LFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHhhCcc--cccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHH
Confidence 8888777553332 234567777777877665 77778888888777765
No 111
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.08 E-value=0.05 Score=55.77 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccC-CCcccHHHHHHHHHhcCCCh-HHHHhhhhchhchH
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDK-NQVGGLEGALSILHFFKITS-EYMKLSAFEIDKIV 249 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~-~~~~~~~~Al~~L~~L~~~~-~~~~~~v~~~~g~i 249 (425)
.....+|+++|.+..-.++..|..+++.|..+.++..|+..... .+.++.--..++|..++... +....++.+ .+++
T Consensus 46 ~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e-~~~~ 124 (446)
T PF10165_consen 46 PDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE-HHGV 124 (446)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH-hhhH
Confidence 47789999999999999999999999999999999999876332 12233555677777766543 334455554 3666
Q ss_pred HHHHHHHccccc-----cc------cCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc-------cCCh
Q 041408 250 ESFTWVLALDDE-----SI------ENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR-------VIAQ 311 (425)
Q Consensus 250 ~~Lv~lL~~~~~-----~~------~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~~ 311 (425)
..++..|..... .. ..+.+...++..+++|+......... ....+.++.|+.+|..- ....
T Consensus 125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 666666542110 00 12445567888999999776544332 11234556666554311 1123
Q ss_pred HHHHHHHHHHHHhCCCC-Cc-------h----HHHHhhCchHHHHHHhhcc----CC---cchHHHHHHHHHHHhCC-Hh
Q 041408 312 QGINAALKLMLDACPSG-RN-------R----MIMVESGAVFELIELELTA----SE---KKTTELILGILFHLCSC-AD 371 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~~~-~n-------~----~~iv~~G~v~~Lv~lL~~~----~~---~~~~e~Al~~L~~L~~~-~e 371 (425)
.....+..+|.|+-... .. . .......+|..|+++|... .+ .....-.+.+|.+++.. ..
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 56677788888873210 00 0 0012335667777777542 11 13455567778888775 44
Q ss_pred hHHHHhh---------------ccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 372 GRAQFLS---------------HRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 372 ~r~~~~~---------------~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.|+.+.. ....-..|++++.+..+..+..+...|+.||+.+.+
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH
Confidence 4444432 122345678877666678899999999999988766
No 112
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0062 Score=61.57 Aligned_cols=187 Identities=7% Similarity=0.021 Sum_probs=130.8
Q ss_pred HHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHc
Q 041408 178 TLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLA 257 (425)
Q Consensus 178 Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~ 257 (425)
++..|..++..-..-|.-+.+..++..|+++|+.+... +.-.+...+.|+...=++.+..+-.. |+|..++.++.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peim----i~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~v~ 483 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIM----IEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccce----eeccchhhhhheeeeccchHHHHHHh-hHHHHHHHHhh
Confidence 34455666655556788888899999999999876543 35566777777664434444444443 89999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHHhcccchhHh-hcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC-C---chH
Q 041408 258 LDDESIENHKEIKSHALRILKNIIQAASSKFLQ-RLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG-R---NRM 332 (425)
Q Consensus 258 ~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~-~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~-~---n~~ 332 (425)
+ .+...|.+..|.|+++..+..+..+. ....-++..++++..++ ...+++..+..|.|+.-+. . .+.
T Consensus 484 s------KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~~knEkskd 555 (743)
T COG5369 484 S------KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDTSKNEKSKD 555 (743)
T ss_pred c------chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhcccccccccccce
Confidence 7 77788999999999999887665321 11123468889999888 8899999999999996522 2 333
Q ss_pred HHHhhC----chHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 333 IMVESG----AVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 333 ~iv~~G----~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.+.+.. ....|++.+... ++...+..+.+|.+++.+.++...++.
T Consensus 556 v~~K~~p~~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 556 VFIKATPRRYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred eEEecChHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHH
Confidence 333321 344567777765 666666678888888887766665543
No 113
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00034 Score=73.36 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=41.7
Q ss_pred CCcccCcCCccCCCC-----ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD-----PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-----PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
..+-.|+||.+.|.. |-.++|||.|...|+..|+++. .+||.||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---CcCCcchhhh
Confidence 346799999999999 7789999999999999999984 7999999744
No 114
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0011 Score=61.16 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=43.9
Q ss_pred CCCCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
...-.....||+|++.=.-|-+. +|||.||--||..-+.-.. .++||.|+.+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a-sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA-SFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh-hcccCccCCCCc
Confidence 34456678999999999999977 6999999999998776432 589999997764
No 115
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00082 Score=60.90 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=45.6
Q ss_pred CcccCcCCccCCCCce----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 71 EYFICPISLQIMKDPV----TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV----~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
..|.||+|.+.+.+-+ +-+|||.|+..|.++..... ..||+|+.|+.. .++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---~v~pv~d~plkd-rdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---MVDPVTDKPLKD-RDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---ccccCCCCcCcc-cceEe
Confidence 5699999999998875 34899999999999998764 689999999987 77766
No 116
>PTZ00429 beta-adaptin; Provisional
Probab=96.82 E-value=0.15 Score=55.39 Aligned_cols=244 Identities=9% Similarity=0.033 Sum_probs=135.2
Q ss_pred ccHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHH
Q 041408 127 PNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRA 204 (425)
Q Consensus 127 pn~~l~~~I~~~~~~n~~~~~~~~p~~~~~~~~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~ 204 (425)
.|..+|+++--|...-... .|....-.+..+.+.+.+ +-.+.-|++.|..+.. +..-. -.++.
T Consensus 80 ~d~elKKLvYLYL~~ya~~--------~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~ 144 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARL--------QPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-----YTLEP 144 (746)
T ss_pred CCHHHHHHHHHHHHHHccc--------ChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-----HHHHH
Confidence 5677888887777654421 111111224455555644 4566667777765532 11111 12334
Q ss_pred HHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc
Q 041408 205 MLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA 284 (425)
Q Consensus 205 Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~ 284 (425)
+.+.|.+. ++-++..|+-++..+-..+++ .+.. .|+++.|..+|.. .++.+..+|+.+|..+...+
T Consensus 145 lkk~L~D~----~pYVRKtAalai~Kly~~~pe---lv~~-~~~~~~L~~LL~D------~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 145 LRRAVADP----DPYVRKTAAMGLGKLFHDDMQ---LFYQ-QDFKKDLVELLND------NNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHhcCC----CHHHHHHHHHHHHHHHhhCcc---cccc-cchHHHHHHHhcC------CCccHHHHHHHHHHHHHHhC
Confidence 44445433 345688888888877543332 3332 2789999999986 89999999999999998765
Q ss_pred cchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHH
Q 041408 285 SSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILF 364 (425)
Q Consensus 285 ~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~ 364 (425)
..... ...+.+..|+..|.+. ++-.+-..+.+|......++ ... ...+..+...|.+. ++.+.-.|+.++.
T Consensus 211 ~~~l~--l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~P~~~--~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il 281 (746)
T PTZ00429 211 SEKIE--SSNEWVNRLVYHLPEC--NEWGQLYILELLAAQRPSDK--ESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVA 281 (746)
T ss_pred chhhH--HHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCc--HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 44322 2235567777777666 66666666666654332221 111 23455566666654 6667777777777
Q ss_pred HHhCC--HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 365 HLCSC--ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 365 ~L~~~--~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
++... ++-...+.. ...++|+.+ .+.++..|-.++..|..|...
T Consensus 282 ~l~~~~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 282 NLASRCSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HhcCcCCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 77643 222222211 111344442 333444555555455444443
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.79 E-value=0.00049 Score=67.08 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHc
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ 105 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~ 105 (425)
+++++.||||...|+||++++|||+.||.|-...+.+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 3688999999999999999999999999998766554
No 118
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.79 E-value=0.00046 Score=60.40 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=39.2
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
|.|-||..-++.||++.|||.||-.|--.-...+ ..|-+|+....
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg---~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG---DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccC---Ccceecchhhc
Confidence 9999999999999999999999999976666554 78999987764
No 119
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.76 E-value=0.45 Score=43.97 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=151.0
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCC--------CcccHHHHHHHHHh
Q 041408 160 LQIIKLIKDIWKPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKN--------QVGGLEGALSILHF 230 (425)
Q Consensus 160 ~~i~~lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~--------~~~~~~~Al~~L~~ 230 (425)
+.+..++..+.+++.+..|+..|..--+..+..-..+-. -|....|++=+-+..... .+.-.-+|+.+|.-
T Consensus 26 dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQc 105 (293)
T KOG3036|consen 26 DKAYQLILSLVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQC 105 (293)
T ss_pred cchhhHHHHhhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHH
Confidence 346666777777777888887776554433332222222 355555444332222111 11225778888888
Q ss_pred cCCChHHHHhhhhchhchHHH-HHHHHccccccccCCH-HHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccc
Q 041408 231 FKITSEYMKLSAFEIDKIVES-FTWVLALDDESIENHK-EIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQR 307 (425)
Q Consensus 231 L~~~~~~~~~~v~~~~g~i~~-Lv~lL~~~~~~~~~~~-~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~ 307 (425)
++++.+....++.. -||. +-.+|.. + +.+..- -.|-.+..++..|...++.-. ..-...++||..++.+..|
T Consensus 106 vASHpdTr~~FL~A---~iPlylYpfL~T-t-~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G 180 (293)
T KOG3036|consen 106 VASHPDTRRAFLRA---HIPLYLYPFLNT-T-SKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG 180 (293)
T ss_pred HhcCcchHHHHHHc---cChhhhHHhhhc-c-ccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence 99988887766653 2332 2333331 0 011333 367788999999998776543 3445678999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchHHHHh--------hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhc
Q 041408 308 VIAQQGINAALKLMLDACPSGRNRMIMVE--------SGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSH 379 (425)
Q Consensus 308 ~~~~~~~~~A~~aL~~L~~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~ 379 (425)
+...+..|+-.+..+-.++.+-..+.. .-.+.-+|.-|.+.++..+...++....+|+.++..|.++...
T Consensus 181 --SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~c 258 (293)
T KOG3036|consen 181 --SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSC 258 (293)
T ss_pred --cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 888888898888888877776555543 1233344444444457888899999999999999998887431
Q ss_pred cccHHHHH-----HHHhcCChHHHHHHHHHHHHHhcc
Q 041408 380 RAAIAVVT-----KRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 380 ~g~i~~Lv-----~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.|..+ ..+++....++.+-...|.+|+.+
T Consensus 259 ---lPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 259 ---LPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred ---CcchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 22211 223344556666777777776653
No 120
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00092 Score=60.59 Aligned_cols=39 Identities=31% Similarity=0.606 Sum_probs=34.4
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQG 106 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~ 106 (425)
.|-+.-+|.+|.+.++|||+++.||.|||.||.+++-..
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 355556899999999999999999999999999998753
No 121
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.013 Score=59.40 Aligned_cols=166 Identities=12% Similarity=0.063 Sum_probs=118.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
.+++.|+++|+. .+..+.--+...+.|+...-++-..-+...|+|..|+.++.+. +...+.+..|+|+++..
T Consensus 431 ~I~elLi~~Ls~------Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--DdaLqans~wvlrHlmy 502 (743)
T COG5369 431 PIVELLIDALSN------PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--DDALQANSEWVLRHLMY 502 (743)
T ss_pred chHHHHHHHhcC------ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--hhhhhhcchhhhhhhhh
Confidence 688999999975 3333344455666666665566666667789999999999987 88999999999999998
Q ss_pred CCCc--hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh---HHHHh----hccccHHHHHHHHhcCChHH
Q 041408 327 SGRN--RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADG---RAQFL----SHRAAIAVVTKRIMQVSPAA 397 (425)
Q Consensus 327 ~~~n--~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~---r~~~~----~~~g~i~~Lv~ll~~~s~~~ 397 (425)
+.++ +-++...-.+..++++..+. +-.+++..+-+|.|+.....- -..+. -..-....|++.+-..++..
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~ 581 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME 581 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence 7654 33456666778899988775 788999999999999773221 11111 11112344555555556766
Q ss_pred HHHHHHHHHHHhccCCChHHHHHH
Q 041408 398 DDRAILILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 398 ~e~a~~~L~~l~~~~~~~~~~v~e 421 (425)
.+..+.+|.+++...++.+.+|++
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHh
Confidence 777899999999988887777765
No 122
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.70 E-value=0.003 Score=44.45 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
+.+|..|+++|.+++........... ..+++.|+.+|.+. ++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 46789999999987765554443332 47899999999988 889999999999875
No 123
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0017 Score=61.51 Aligned_cols=60 Identities=22% Similarity=0.490 Sum_probs=49.5
Q ss_pred hhccccCCCCCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 59 FQMDDHQDIEIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 59 ~~~~~~~~~~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.++.++...-.|+.=.||+|.+--.+|.++ .+|..||-.||-.|... ...||+|+.|..-
T Consensus 287 ~~~~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 287 KQYNSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASV 347 (357)
T ss_pred hhcccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchH
Confidence 455555566667778999999999999877 58999999999999986 4799999988753
No 124
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.028 Score=58.36 Aligned_cols=164 Identities=9% Similarity=0.078 Sum_probs=118.0
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhh-hhch--hchHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLS-AFEI--DKIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~-v~~~--~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
...+|.|..+|.+.+... ++.|..+|..++.+....-.. +... .-.+|.+..+.++ .++..|.+|+.
T Consensus 127 pelLp~L~~~L~s~d~n~----~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h------~spkiRs~A~~ 196 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNT----CEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH------PSPKIRSHAVG 196 (885)
T ss_pred hhHHHHHHHHhcCCcccc----cchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC------CChhHHHHHHh
Confidence 356899999998876544 899999999998765432111 1111 1378999999998 89999999999
Q ss_pred HHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcch
Q 041408 276 ILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKT 355 (425)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~ 355 (425)
.+....-..........+ .+++.|..+-.+. ++++|+...++|.-|-.....+..=.=.++|..++..-++. +..+
T Consensus 197 cvNq~i~~~~qal~~~iD-~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~V 272 (885)
T KOG2023|consen 197 CVNQFIIIQTQALYVHID-KFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENV 272 (885)
T ss_pred hhhheeecCcHHHHHHHH-HHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhH
Confidence 987766555444443443 5788888888777 99999999999988876554433222346777777777765 7778
Q ss_pred HHHHHHHHHHHhCCHhhHHHH
Q 041408 356 TELILGILFHLCSCADGRAQF 376 (425)
Q Consensus 356 ~e~Al~~L~~L~~~~e~r~~~ 376 (425)
.-.|+.-...+|..+--+..+
T Consensus 273 ALEACEFwla~aeqpi~~~~L 293 (885)
T KOG2023|consen 273 ALEACEFWLALAEQPICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcCcCcHHHH
Confidence 888889899999887555444
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.3 Score=46.98 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=138.3
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHH--HHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhch
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAM--LTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKI 248 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~L--v~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~ 248 (425)
+.++...|...+..++. .+..-+.+.++.....+ ..+-...++ .++...+.++..+.+-.++....+.. .|.
T Consensus 141 ddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcnd----iaRvRVleLIieifSiSpesaneckk-SGL 214 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCND----IARVRVLELIIEIFSISPESANECKK-SGL 214 (524)
T ss_pred cHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhh----HHHHHHHHHHHHHHhcCHHHHhHhhh-hhH
Confidence 44666777778877764 34555666666555432 222222221 23555666666666555554455543 388
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH----HHHHHh
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL----KLMLDA 324 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~----~aL~~L 324 (425)
+..|..-|+. ..+.-++.+++.....|+..+..+..+. +.|+|..+..++...+.+|=.+-.++ +.+.+.
T Consensus 215 ldlLeaElkG-----teDtLVianciElvteLaeteHgrefla-QeglIdlicnIIsGadsdPfekfralmgfgkffgke 288 (524)
T KOG4413|consen 215 LDLLEAELKG-----TEDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE 288 (524)
T ss_pred HHHHHHHhcC-----CcceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch
Confidence 8888888875 3566678899999999998777666554 45899998888865533333222222 223333
Q ss_pred CCCCCchHHHHhh--CchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc---CC-hHHH
Q 041408 325 CPSGRNRMIMVES--GAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ---VS-PAAD 398 (425)
Q Consensus 325 ~~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~---~s-~~~~ 398 (425)
...+-.-..++++ -+|.-..+++... |+..++.|..+|..|-++.+|...+.. . |-|..-.++.+ .+ ..-+
T Consensus 289 aimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllk-T-gppaaehllarafdqnahakq 365 (524)
T KOG4413|consen 289 AIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLK-T-GPPAAEHLLARAFDQNAHAKQ 365 (524)
T ss_pred HHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhc-c-CChHHHHHHHHHhcccccchH
Confidence 3322222233332 2344455566665 899999999999999999999987755 2 34444444433 23 2446
Q ss_pred HHHHHHHHHHhcc
Q 041408 399 DRAILILSLICKF 411 (425)
Q Consensus 399 e~a~~~L~~l~~~ 411 (425)
+.++.+|.+++..
T Consensus 366 eaaihaLaaIage 378 (524)
T KOG4413|consen 366 EAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHhhcc
Confidence 7788888888764
No 126
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.62 E-value=0.0028 Score=41.33 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=30.0
Q ss_pred hcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 291 RLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 291 ~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
..+.|++++|+++|.++ +++.++.|+++|+||+.
T Consensus 8 i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 8 VVDAGGLPALVELLKSE--DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcC
Confidence 44568999999999977 99999999999999974
No 127
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0024 Score=61.93 Aligned_cols=46 Identities=24% Similarity=0.446 Sum_probs=38.9
Q ss_pred ccCcCCccCCCC--ce-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKD--PV-TAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~d--PV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+.|-||.+-+.+ -+ ++||+|.|=..||..|+.+.+ ..||.|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r--~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR--TFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC--ccCCCCCCcCC
Confidence 699999998864 33 679999999999999999863 67999998654
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.49 E-value=0.0047 Score=43.48 Aligned_cols=55 Identities=13% Similarity=-0.089 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHH
Q 041408 311 QQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHL 366 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L 366 (425)
+.+|..|+++|.+++........-.-..++|.|+.+|.+. ++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4689999999999887665555556678999999999875 778999999999875
No 129
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.41 E-value=0.22 Score=49.29 Aligned_cols=203 Identities=10% Similarity=0.016 Sum_probs=137.4
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchh-----chHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEID-----KIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
.+-.++.+++..+.+ +.....+..+..+-..+.....++.... -.-+..+.+|.. .+.-....+.+
T Consensus 66 ~v~~fi~LlS~~~kd---d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r------~d~~iv~~~~~ 136 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKD---DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR------QDTFIVEMSFR 136 (442)
T ss_pred HHHHHHHHhchhhhH---HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc------CChHHHHHHHH
Confidence 355566666544322 1244555555554444433333333211 124567788876 77777777899
Q ss_pred HHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhh-ccCCcc
Q 041408 276 ILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELEL-TASEKK 354 (425)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~-~~~~~~ 354 (425)
++..++.....+...+...=....|-..+.++ .+++..--|+++|-.+...++.|..++.+.++..++..|. +..+-.
T Consensus 137 Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~-~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~Q 215 (442)
T KOG2759|consen 137 ILSKLACFGNCKMELSELDVYKGFLKEQLQSS-TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQ 215 (442)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchh
Confidence 99999876654433211111233445555553 3778888999999999999999999999999999999994 333556
Q ss_pred hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccCCC
Q 041408 355 TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~~~ 414 (425)
++=..+-.++.|.-.+...+.+ ...+-|+.|++++... -.++.+..++++.+++..++.
T Consensus 216 lQYqsifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 216 LQYQSIFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred HHHHHHHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 6667788899898877766666 5577899999977644 347778899999999998865
No 130
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.031 Score=60.74 Aligned_cols=141 Identities=9% Similarity=0.042 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchh---chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEID---KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIF 297 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~---g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i 297 (425)
.+-++.+|.|+....+....++++.. |-.+.+...|.. -+.+.++.-|..++..+....+-...++. .|.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~-----~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL 1815 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC-----RKHPKLQILALQVILLATANKECVTDLAT-CNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH-----cCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHH
Confidence 56788899998765554444443321 556777888876 37788999999999888776654444554 4789
Q ss_pred HHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 298 QNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 298 ~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
..|+.+|.+. |..|+.++.+|+.|+++++-.+...+.|++-.+.+++-...++.....|+..|..|....
T Consensus 1816 ~~LL~lLHS~---PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ---PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHHHhcC---hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9999999874 889999999999999999988899999999999988865446667777888888887644
No 131
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.40 E-value=0.0029 Score=58.09 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=39.1
Q ss_pred cccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
.++||++......||+. .|||.|+|..|+.++.... ...||+-+.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~-~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEI-TIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCc-eeecccccCC
Confidence 47999999999999976 7999999999999997643 4679996655
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=0.037 Score=60.17 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=137.5
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHH
Q 041408 202 PRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNII 281 (425)
Q Consensus 202 i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~ 281 (425)
+|.++++|-|..+ +-.|+.+|+.+-.-..=...+.-. -|+.|.++++|++ ...+.|..-+.+=..+.
T Consensus 474 LPiVLQVLLSQvH------RlRAL~LL~RFLDlGpWAV~LaLs-VGIFPYVLKLLQS------~a~ELrpiLVFIWAKIL 540 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVH------RLRALVLLARFLDLGPWAVDLALS-VGIFPYVLKLLQS------SARELRPILVFIWAKIL 540 (1387)
T ss_pred cchHHHHHHHHHH------HHHHHHHHHHHhccchhhhhhhhc-cchHHHHHHHhcc------chHhhhhhHHHHHHHHH
Confidence 5666666655432 677777777643222111111112 3899999999998 77888888777777777
Q ss_pred hcccchhHhhcchhHHHHHHHHhcc-ccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHH
Q 041408 282 QAASSKFLQRLKPQIFQNIIRVLKQ-RVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELI 359 (425)
Q Consensus 282 ~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~A 359 (425)
..+.+++.-.+..++-.-+++.|.. ...+++-|.-|+-+|..++.+ ..+++...+.+.|..-++.|.++..+-.+.=.
T Consensus 541 AvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~ 620 (1387)
T KOG1517|consen 541 AVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL 620 (1387)
T ss_pred hcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence 7777777644444555666777765 333557777888888888874 56888889999999999999774234455555
Q ss_pred HHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 360 LGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 360 l~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
+-.|..|=. ..+.|..=++ .++...|+.+|....++++-.|+.+|-.+-.++
T Consensus 621 ~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 621 CICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 666777755 5566665555 567889999777678899999999998887753
No 133
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.31 E-value=0.22 Score=50.35 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=35.3
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.+.+..+|++ .++.++..|+.+|..+.. ...++.|...+.+. ++.+|..|+.++..+
T Consensus 149 ~~~L~~~L~d------~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~--~~~VR~aA~~al~~l 205 (410)
T TIGR02270 149 GPALEAALTH------EDALVRAAALRALGELPR-----------RLSESTLRLYLRDS--DPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCC--CHHHHHHHHHHHHHc
Confidence 4456666665 666677777777765432 23456666666666 777777777776554
No 134
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.25 E-value=0.045 Score=54.69 Aligned_cols=169 Identities=9% Similarity=0.010 Sum_probs=122.7
Q ss_pred hHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHH
Q 041408 194 KCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHA 273 (425)
Q Consensus 194 ~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A 273 (425)
..+...|++..|++++.+++... .++..|..+|-.+.... +. ..++.. | +..+..+-+. ...++.....
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et--~vRve~~rlLEq~~~ae-N~-d~va~~-~-~~~Il~lAK~-----~e~~e~aR~~ 242 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLET--SVRVEAARLLEQILVAE-NR-DRVARI-G-LGVILNLAKE-----REPVELARSV 242 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhhh-hh-hHHhhc-c-chhhhhhhhh-----cCcHHHHHHH
Confidence 45667899999999998887654 44788888888765332 22 233322 2 2223333332 2667888899
Q ss_pred HHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccC
Q 041408 274 LRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTAS 351 (425)
Q Consensus 274 ~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~ 351 (425)
+.+|.++-...+...+-.+..|++..++--.+.. +|..-+.++-+|.|...+. ..+++|++..+-..|.-+-.+.
T Consensus 243 ~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk- 319 (832)
T KOG3678|consen 243 AGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK- 319 (832)
T ss_pred HHHHHHHhhhhHHHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-
Confidence 9999999877665544444567888888888877 8999999999999988754 5888999988888888888776
Q ss_pred CcchHHHHHHHHHHHhCCHhhHHHH
Q 041408 352 EKKTTELILGILFHLCSCADGRAQF 376 (425)
Q Consensus 352 ~~~~~e~Al~~L~~L~~~~e~r~~~ 376 (425)
|....-.|+-+.+-|+...|--..+
T Consensus 320 Del~R~~AClAV~vlat~KE~E~~V 344 (832)
T KOG3678|consen 320 DELLRLHACLAVAVLATNKEVEREV 344 (832)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 7777788888888888877655544
No 135
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.24 E-value=0.24 Score=49.73 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=104.0
Q ss_pred HHHHHHHHHhcCh----hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC-C
Q 041408 160 LQIIKLIKDIWKP----ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI-T 234 (425)
Q Consensus 160 ~~i~~lv~~l~s~----~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~-~ 234 (425)
+++..|+..+.++ .++.++.+.|..+. ..+|++.++.-| ...++.+- ..... ++.....+.+|.++-. +
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lA-K~~e~--~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLA-KEREP--VELARSVAGILEHMFKHS 253 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhh-hhcCc--HHHHHHHHHHHHHHhhhh
Confidence 3444556666443 55788888886553 356788877654 33333322 21111 1235556778888654 4
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccccCChHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
++.+..++.. |+++.++.-.+. .++....+++-+|.|++-...... .-+++..+-+.|+-+-.+. +.-.
T Consensus 254 eet~~~Lvaa--~~lD~vl~~~rR------t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~ 323 (832)
T KOG3678|consen 254 EETCQRLVAA--GGLDAVLYWCRR------TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELL 323 (832)
T ss_pred HHHHHHHHhh--cccchheeeccc------CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHH
Confidence 5566777774 888888777776 679999999999999986554322 2233445667777777766 7778
Q ss_pred HHHHHHHHHHhCCCCCchHHHHhhC
Q 041408 314 INAALKLMLDACPSGRNRMIMVESG 338 (425)
Q Consensus 314 ~~~A~~aL~~L~~~~~n~~~iv~~G 338 (425)
+-.|.-+++-|+.+.+.-...-++|
T Consensus 324 R~~AClAV~vlat~KE~E~~VrkS~ 348 (832)
T KOG3678|consen 324 RLHACLAVAVLATNKEVEREVRKSG 348 (832)
T ss_pred HHHHHHHHhhhhhhhhhhHHHhhcc
Confidence 8888888888887665444444444
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.16 E-value=0.05 Score=47.14 Aligned_cols=124 Identities=12% Similarity=0.043 Sum_probs=93.0
Q ss_pred HHhhcCcHHHHHHHHhhcccC--CCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHH
Q 041408 195 CMAEAGVPRAMLTYIVNCCDK--NQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSH 272 (425)
Q Consensus 195 ~i~~~G~i~~Lv~lL~s~~~~--~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~ 272 (425)
.+...||++.|++++.++... ........++.++.+|..+.-.....+.. .+|..++...+.. ..+..+...
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~--~FI~Kia~~Vn~~----~~d~~i~q~ 79 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSD--SFIKKIASYVNSS----AMDASILQR 79 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccH--HHHHHHHHHHccc----cccchHHHH
Confidence 345678999999999876531 01133667888888888766555565654 6888999988862 236888999
Q ss_pred HHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 273 ALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 273 A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
|..+|.++...+......+...=-++.|+..|+.. +++.+..|...+-.|-.
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 99999999987776555554434589999999998 99999999988887765
No 137
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.07 E-value=0.22 Score=46.55 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=130.7
Q ss_pred HHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCc--------ccHHHHHHHHHhcCCCh
Q 041408 165 LIKDIWKPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQV--------GGLEGALSILHFFKITS 235 (425)
Q Consensus 165 lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~--------~~~~~Al~~L~~L~~~~ 235 (425)
++..+.+++.+..|+..|..--+..++---.+=. -|.+..|++=+-+.....++ .-..+|+++|.-++.++
T Consensus 2 ~i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp 81 (262)
T PF04078_consen 2 LILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP 81 (262)
T ss_dssp HHHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T
T ss_pred hhHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh
Confidence 4566778888898888886554333333233333 48877776655444322211 12567888888889888
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCC---HHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccccCCh
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENH---KEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQRVIAQ 311 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~---~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~ 311 (425)
+....++.. .+.-.|.-+|+.. ..+ ...|-.+..++..|...++... ....+..++|..++.+..| +.
T Consensus 82 etr~~Fl~a--~iplyLyPfL~tt----~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--se 153 (262)
T PF04078_consen 82 ETRMPFLKA--HIPLYLYPFLNTT----SKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SE 153 (262)
T ss_dssp TTHHHHHHT--TGGGGGHHHHH--------SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---H
T ss_pred HHHHHHHHc--Cchhhehhhhhcc----ccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cH
Confidence 877777764 3433344455421 122 2356678899999987665433 3455678999999999999 88
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHh--------hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 312 QGINAALKLMLDACPSGRNRMIMVE--------SGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
-.+..|.-.+..+-.++.+-..+.. ..++..+|.-|...+++.+......+...|+.++..|.++..
T Consensus 154 lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 154 LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888777665554333322 235555666555555788999999999999999999988853
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.97 E-value=0.0033 Score=61.91 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=35.6
Q ss_pred cCcCCccCCCCce----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPV----TAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 74 ~Cpi~~~~m~dPV----~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+||+|.+-|-+-| ++.|.|+|--+|+.+|+. .+||+||.-.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-----~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-----SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc-----CcChhhhhhcC
Confidence 8999999996666 457999999999999986 47999986554
No 139
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.95 E-value=0.41 Score=48.44 Aligned_cols=89 Identities=12% Similarity=-0.059 Sum_probs=59.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
++.+.|+.+|++ .++.++..++.++.. .. ....+.|+.+|++. ++.++..|+++|..+-.
T Consensus 117 ~a~~~L~~~L~~------~~p~vR~aal~al~~----------r~--~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 QAEPWLEPLLAA------SEPPGRAIGLAALGA----------HR--HDPGPALEAALTHE--DALVRAAALRALGELPR 176 (410)
T ss_pred HHHHHHHHHhcC------CChHHHHHHHHHHHh----------hc--cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc
Confidence 456667777776 677777666655543 11 12356777788777 78888888888876542
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHH
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHL 366 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L 366 (425)
..++|.|...+.+. ++.+...|+.+|..+
T Consensus 177 ----------~~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 ----------RLSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred ----------ccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 34556677777665 778888888777544
No 140
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0073 Score=56.59 Aligned_cols=47 Identities=19% Similarity=0.518 Sum_probs=37.6
Q ss_pred ccCcCCccCCC--Cce-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMK--DPV-TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~--dPV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.-|-||+.-|. |-+ ++||.|.|-+.||++|+..- ...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y--~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY--SNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh--cccCCccCCCCCC
Confidence 46999986553 444 57999999999999999854 3689999988854
No 141
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=1 Score=47.29 Aligned_cols=172 Identities=12% Similarity=0.125 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhH--Hhh--cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 159 KLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKC--MAE--AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 159 ~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~--i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
+..++.|...|.++ ..+.-|..+|..+++++++.-.. .-. .=.+|.++++.++++.+. +..|+..+-..-
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spki----Rs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKI----RSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhH----HHHHHhhhhhee
Confidence 45577777777654 45677888888888776542211 111 135788999988876544 888888776543
Q ss_pred CChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChH
Q 041408 233 ITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 233 ~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
.... +.++.....+++.+..+-+. .++++|++.+.+|..|......+..--. .++++-+++.-++. +..
T Consensus 203 ~~~~--qal~~~iD~Fle~lFalanD------~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~--dE~ 271 (885)
T KOG2023|consen 203 IIQT--QALYVHIDKFLEILFALAND------EDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDV--DEN 271 (885)
T ss_pred ecCc--HHHHHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCc--chh
Confidence 3322 22333223577777777654 8999999999999999887766654333 37888888888887 778
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHh--hCchHHHHH
Q 041408 313 GINAALKLMLDACPSGRNRMIMVE--SGAVFELIE 345 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~--~G~v~~Lv~ 345 (425)
+.-.|......++..+--+..+.. ...||.|++
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 888899999999987743333333 356677665
No 142
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.26 Score=54.02 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcccchhH-hhcc---hhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHH
Q 041408 270 KSHALRILKNIIQAASSKFL-QRLK---PQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIE 345 (425)
Q Consensus 270 ~~~A~~~L~~L~~~~~~~~~-~~~~---~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~ 345 (425)
..-+..+|.|+...+.+-.. .+.+ -|.++.++..|... .++++++-|+.++.-+..+.+-...+++.|++..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR-KHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc-CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45677889998776653322 2222 24567777777654 3789999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccC
Q 041408 346 LELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFS 412 (425)
Q Consensus 346 lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~ 412 (425)
+|.+ -+...+.++.+|..|++.++--++.+.++ |+..+.+++-.. ++..+..|+.+|..|-...
T Consensus 1821 lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg-~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHS--QPSMRARVLDVLYALSSNGQIGKEALEHG-GLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcC-chhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 9987 46788999999999999998877777754 566777755433 5666778888888876543
No 143
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=1.2 Score=47.09 Aligned_cols=228 Identities=14% Similarity=0.131 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHH
Q 041408 175 QTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTW 254 (425)
Q Consensus 175 ~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~ 254 (425)
+..|++-|+.+- .+++ .+-..+-...++.+|.+.+- .+...+...+-.|+...+... .++++..|.
T Consensus 166 qkaALclL~L~r-~spD---l~~~~~W~~riv~LL~D~~~----gv~ta~~sLi~~lvk~~p~~y------k~~~~~avs 231 (938)
T KOG1077|consen 166 QKAALCLLRLFR-KSPD---LVNPGEWAQRIVHLLDDQHM----GVVTAATSLIEALVKKNPESY------KTCLPLAVS 231 (938)
T ss_pred HHHHHHHHHHHh-cCcc---ccChhhHHHHHHHHhCcccc----ceeeehHHHHHHHHHcCCHHH------hhhHHHHHH
Confidence 445666665553 3333 22223567889999866542 345666666666665433211 133333333
Q ss_pred HHc----c-ccc------cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH-HHHHH--
Q 041408 255 VLA----L-DDE------SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN-AALKL-- 320 (425)
Q Consensus 255 lL~----~-~~~------~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~-~A~~a-- 320 (425)
-|. . .++ -.-.+|..+...+++|.++-..++....... ..++..++...+..+.+..+++ +|-.|
T Consensus 232 ~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~vq~~na~naVL 310 (938)
T KOG1077|consen 232 RLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKVQHSNAKNAVL 310 (938)
T ss_pred HHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccchHhhhhHHHHH
Confidence 322 1 000 0014577788888888887444333322211 1234444444442211222221 22222
Q ss_pred --HHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChH
Q 041408 321 --MLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPA 396 (425)
Q Consensus 321 --L~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~ 396 (425)
.-+|.. .++....+++ ++..|-++|.+. +..++=.|+.-+..|+++.....++--+ ...++..|+.. ...
T Consensus 311 FeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 311 FEAISLAIHLDSEPELLSR--AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVS 384 (938)
T ss_pred HHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchH
Confidence 224444 4555556654 677888888876 7888888999999999886666655433 45666656634 557
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHhhc
Q 041408 397 ADDRAILILSLICKFSGNFNFVVQEMSR 424 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~~~~~~v~e~~~ 424 (425)
.+++|+-+|+.+|..+.. +.+|.|+.|
T Consensus 385 irrravDLLY~mcD~~Na-k~IV~elLq 411 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNA-KQIVAELLQ 411 (938)
T ss_pred HHHHHHHHHHHHhchhhH-HHHHHHHHH
Confidence 889999999999999999 999999986
No 144
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.52 E-value=0.015 Score=40.24 Aligned_cols=45 Identities=27% Similarity=0.470 Sum_probs=24.9
Q ss_pred ccCcCCccCCCCceec-CCCcc--ccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTA-ITGIT--YDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~~g~t--~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
+.|||+.+.|+-||-. .|.|. ||-...-+.....+ .-.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~-~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTP-KWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS----B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccC-CeECcCCcCc
Confidence 6899999999999965 68876 66644444444332 4689999864
No 145
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.24 Score=52.45 Aligned_cols=198 Identities=12% Similarity=0.038 Sum_probs=122.1
Q ss_pred CcHHHHHHHHhhcccCCCccc---HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGG---LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRI 276 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~---~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~ 276 (425)
+++|.|+++|...+...+.++ ...|-..|..++... ...++- -++|.+-.-+++ .+..-+..|+-+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~---~Vl~Fiee~i~~------pdwr~reaavmA 387 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVP---HVLPFIEENIQN------PDWRNREAAVMA 387 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchh---hhHHHHHHhcCC------cchhhhhHHHHH
Confidence 788999999976332211111 222223333332100 011221 245555556666 788899999999
Q ss_pred HHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC-c-hHHHHhhCchHHHHHHhhccCCcc
Q 041408 277 LKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR-N-RMIMVESGAVFELIELELTASEKK 354 (425)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~-n-~~~iv~~G~v~~Lv~lL~~~~~~~ 354 (425)
+..+-.+.+.....-.-.+++|.++.++.++ +.-++..++|+|..++..-. - -....-.+.++.+++-|.+ .+.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePr 463 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPR 463 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cch
Confidence 9999888776655444457899999999987 88899999999999987432 1 1111234667777777765 688
Q ss_pred hHHHHHHHHHHHhCCH-----h-hHHHHhhccccHHHHHHHHhcCC-------hHHHHHHHHHHHHHhccCCC
Q 041408 355 TTELILGILFHLCSCA-----D-GRAQFLSHRAAIAVVTKRIMQVS-------PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~-----e-~r~~~~~~~g~i~~Lv~ll~~~s-------~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..++.+++.+|+..- + +...... -..+.+++-|+++. ...+-.|-.+|..|-++++.
T Consensus 464 va~N~CWAf~~Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 464 VASNVCWAFISLAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 8899999999998411 0 1111111 12344554454432 23455677888888888776
No 146
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.012 Score=53.82 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=41.4
Q ss_pred CCcccCcCCccCCCCce----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPV----TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLT 126 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV----~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~ 126 (425)
...|.|||++-.|.+-. +-+|||.|.-+.+++.-. .+||+|+.+++. ++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-----s~C~~C~a~y~~-~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-----SVCHVCGAAYQE-DDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh-----ccccccCCcccc-cCeE
Confidence 45699999999998865 348999999999888753 589999999987 4433
No 147
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.017 Score=55.27 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=40.7
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
++-.||||.--=...|..||||.-|..||.+|+-++ +.|=+|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~---k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC---KRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcC---CeeeEecceee
Confidence 567899999888888899999999999999999975 68888876553
No 148
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.30 E-value=1.9 Score=39.98 Aligned_cols=154 Identities=11% Similarity=0.137 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCc-ccHHHHHHHHHhcCCChH-HHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQV-GGLEGALSILHFFKITSE-YMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~-~~~~~Al~~L~~L~~~~~-~~~~~v~~~~g~i~ 250 (425)
...+.|+.-|..++. +++.|..+.++.+--.+-.+|...+.+... -.+-.++++++.|...++ +........ ++||
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVP 171 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVP 171 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHH
Confidence 345778888888774 677888888877666677777544433211 347778999998875433 333333333 8999
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc-------hhHHHHH-HHHhccccCChHHHHHHHHHHH
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK-------PQIFQNI-IRVLKQRVIAQQGINAALKLML 322 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-------~g~i~~L-v~lL~~~~~~~~~~~~A~~aL~ 322 (425)
..++.+.. |+...+.-|..++..+...+..-.-+... +-++..+ .++.+.+ +++.-+.+.++..
T Consensus 172 lCLrime~------GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYl 243 (293)
T KOG3036|consen 172 LCLRIMES------GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYL 243 (293)
T ss_pred HHHHHHhc------ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 99999998 89999999999998887776643322111 1122333 3334555 8899999999999
Q ss_pred HhCCCCCchHHHHh
Q 041408 323 DACPSGRNRMIMVE 336 (425)
Q Consensus 323 ~L~~~~~n~~~iv~ 336 (425)
+|+.++..|..+..
T Consensus 244 rLsdnprar~aL~~ 257 (293)
T KOG3036|consen 244 RLSDNPRARAALRS 257 (293)
T ss_pred HhcCCHHHHHHHHh
Confidence 99999887766653
No 149
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.013 Score=57.29 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=37.4
Q ss_pred ccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 73 FICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 73 ~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
|.|||..+--.| |+.+.|||..+|.+|.+-...+...+.||-|-
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 699999988776 88999999999999999888763337899984
No 150
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.62 Score=47.87 Aligned_cols=202 Identities=12% Similarity=0.121 Sum_probs=121.5
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHH---HH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHAL---RI 276 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~---~~ 276 (425)
..++.++.-+.++.. ..+..|+.-+..+..-... ..+-...|++..+..++..+ .....+..+. ..
T Consensus 250 ~~i~vlv~~l~ss~~----~iq~~al~Wi~efV~i~g~--~~l~~~s~il~~iLpc~s~~-----e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEP----EIQLKALTWIQEFVKIPGR--DLLLYLSGILTAILPCLSDT-----EEMSIKEYAQMVNGL 318 (675)
T ss_pred cchhhccccccCCcH----HHHHHHHHHHHHHhcCCCc--chhhhhhhhhhhcccCCCCC-----ccccHHHHHHHHHHH
Confidence 455666665554433 3477776666554322111 11111225666666666541 2223333332 23
Q ss_pred HHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchH
Q 041408 277 LKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTT 356 (425)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 356 (425)
|..+.+.......+.. ...+..|-+.|.+. ..++|-.++.-+..|-....|+.........+.|+.-|.+. ++++.
T Consensus 319 l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vv 394 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDY-GSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVV 394 (675)
T ss_pred HHHHHhhhhhccccch-HHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHH
Confidence 4445444333322221 24788889999887 88999999998888888777877777788999999999886 88999
Q ss_pred HHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHHHH
Q 041408 357 ELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 357 e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e 421 (425)
..++..|+++|.+.+...-+ ..+-.|.++..........++.-+++.||.-=.. +++...
T Consensus 395 l~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a-E~IYr~ 454 (675)
T KOG0212|consen 395 LLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA-ERIYRS 454 (675)
T ss_pred HHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH-HHHHHH
Confidence 99999999999977654211 1233444422222334455777777777764333 344443
No 151
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.04 E-value=0.13 Score=38.48 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 314 INAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 314 ~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.+.|++++.++++++.+...+-+.++|+.++++....+...++--|..+|..++...++.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999999999988888888999999999998765678899999999999999999887743
No 152
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=3.7 Score=42.77 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhh---------
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQR--------- 291 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~--------- 291 (425)
...++..|+.++...+.+-.... +.+||.+...|.. ..+++|+.+..+|..+++.-+|....-
T Consensus 271 K~aslellg~m~~~ap~qLs~~l--p~iiP~lsevl~D------T~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSLCL--PDLIPVLSEVLWD------TKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL 342 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHHHH--hHhhHHHHHHHcc------CCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 56778888877765554433333 3799999999986 789999999999999987655543210
Q ss_pred ----------------------cchhHHHHHHHHhccc--cCChHHHHHHHHHHHHhCCCCCchHHHHh--hCchHHHHH
Q 041408 292 ----------------------LKPQIFQNIIRVLKQR--VIAQQGINAALKLMLDACPSGRNRMIMVE--SGAVFELIE 345 (425)
Q Consensus 292 ----------------------~~~g~i~~Lv~lL~~~--~~~~~~~~~A~~aL~~L~~~~~n~~~iv~--~G~v~~Lv~ 345 (425)
+++-.+..++.+|+.+ ..+...++.++..+.|+|.--++...+.. --.+|.|=.
T Consensus 343 ~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 343 ADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred cCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 1111222333333222 12556677888888888874433333322 123333434
Q ss_pred HhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccCCC
Q 041408 346 LELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 346 lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.+.+- .+++++.++.+|..+...- +...+ ..-+|-+.+.+... +...+.-++..|..++...+.
T Consensus 423 ~~~d~-~PEvR~vaarAL~~l~e~~-g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v 487 (569)
T KOG1242|consen 423 NLDDA-VPEVRAVAARALGALLERL-GEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV 487 (569)
T ss_pred HhcCC-ChhHHHHHHHHHHHHHHHH-Hhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc
Confidence 44443 6889999999998776633 22222 34467777755433 345555666666666665544
No 153
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.95 E-value=0.06 Score=43.10 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhh
Q 041408 269 IKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVES 337 (425)
Q Consensus 269 ~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~ 337 (425)
.|...+.+|.+|+..+...+......|+||.++..-.-.+.+|-.++.|..++.||+. +.+|+..+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567889999999887766665555577999998875444589999999999999998 56788877653
No 154
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.85 E-value=0.93 Score=44.39 Aligned_cols=60 Identities=23% Similarity=0.153 Sum_probs=37.4
Q ss_pred hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHH
Q 041408 337 SGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILS 406 (425)
Q Consensus 337 ~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~ 406 (425)
.-.++.++.++.+. +..++..|..+|..+.... ..+.+.+.+.+...+...+..++.+|-
T Consensus 179 ~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 179 PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 45678888888775 6678888888888887754 123345555444445555544444443
No 155
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=3.4 Score=44.37 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhch---------hchH----HHHHHHHccccccccCCHHHHHHHHHHHHHHHhccc
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEI---------DKIV----ESFTWVLALDDESIENHKEIKSHALRILKNIIQAAS 285 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~---------~g~i----~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 285 (425)
..++.|+.+|+.+-.+.+++.+.|+-+ +.++ ..++.+|+. .+...|..|..+++.|.....
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~D------pD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKD------PDVSIKRRALELSYALVNESN 382 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHhcccc
Confidence 458888889988776666655555432 1111 346777776 788899999999988876433
Q ss_pred chhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC--CCCchHH-------------HHhhCchHHHHHHhhcc
Q 041408 286 SKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP--SGRNRMI-------------MVESGAVFELIELELTA 350 (425)
Q Consensus 286 ~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~--~~~n~~~-------------iv~~G~v~~Lv~lL~~~ 350 (425)
.. ..+..|+..|.+. +++.+..-+.-+..++. .++++.. +|+..++..++.++.++
T Consensus 383 --v~-----~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 383 --VR-----VMVKELLEFLESS--DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred --HH-----HHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 22 3467788888877 78888887777777764 3333222 34456788888888765
Q ss_pred CCcchHHHHHHHHHHHhC-------CHhhHH------------HHh-----------hccccHHHHHHHHhcC--ChHHH
Q 041408 351 SEKKTTELILGILFHLCS-------CADGRA------------QFL-----------SHRAAIAVVTKRIMQV--SPAAD 398 (425)
Q Consensus 351 ~~~~~~e~Al~~L~~L~~-------~~e~r~------------~~~-----------~~~g~i~~Lv~ll~~~--s~~~~ 398 (425)
..+..+.+...|+.-.. ..+.-. .++ .....+..|-+++.+. +...+
T Consensus 454 -~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk 532 (866)
T KOG1062|consen 454 -FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTK 532 (866)
T ss_pred -CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHH
Confidence 22222222222221111 111110 011 1123466777766655 45778
Q ss_pred HHHHHHHHHHhccCCC
Q 041408 399 DRAILILSLICKFSGN 414 (425)
Q Consensus 399 e~a~~~L~~l~~~~~~ 414 (425)
.+|+.+|..|+.....
T Consensus 533 ~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 533 GYALTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHHHHhhccc
Confidence 8999999999886555
No 156
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.006 Score=56.18 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=43.2
Q ss_pred CCCCCC----cccCcCCccCCCCce----------ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 66 DIEIPE----YFICPISLQIMKDPV----------TAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 66 ~~~~p~----~~~Cpi~~~~m~dPV----------~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+..+|. +=.|-+|++-+-+-| .++|+|.|---||.-|+.-|+ .++||-|++...
T Consensus 214 ~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-kqtCPYCKekVd 281 (328)
T KOG1734|consen 214 PSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-KQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-CCCCchHHHHhh
Confidence 444554 458999998776666 689999999999999998776 689999987653
No 157
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=3.4 Score=43.02 Aligned_cols=226 Identities=15% Similarity=0.088 Sum_probs=130.9
Q ss_pred HHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
.+..++..++.+ ..|......|..+...... ....-..+.+.+++....... +..|...+.-+..+.-
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~----~~~aa~~~ag~v~g~~-- 166 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAE----RAGAAYGLAGLVNGLG-- 166 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHH----HhhhhHHHHHHHcCcH--
Confidence 455666666554 4455444555444321111 111234566777776544322 6667677766654332
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHH-HHHHHHHhcccchhHhhcchhHHHHHHHHhccc-cCChHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHAL-RILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR-VIAQQGINA 316 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~-~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~~ 316 (425)
....... +++..+....+. .+...+..+. -+....+..-. ...+.++++.|-.+|.+. +..+.+|++
T Consensus 167 i~~~~~~-~~l~~l~~ai~d------k~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~A 235 (569)
T KOG1242|consen 167 IESLKEF-GFLDNLSKAIID------KKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREA 235 (569)
T ss_pred Hhhhhhh-hHHHHHHHHhcc------cchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHH
Confidence 1112222 678888888875 3333333322 22222221111 112345555555555432 126788888
Q ss_pred HHHHHHHhCC--CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 317 ALKLMLDACP--SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 317 A~~aL~~L~~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
|..+...+-. +....+. .+|+++.-+.+. .-..+..++..|..++.+...+-.... ...+|.+.+.|..--
T Consensus 236 a~~a~kai~~~~~~~aVK~-----llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 236 AVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTK 308 (569)
T ss_pred HHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCC
Confidence 8888776654 2333333 345665555443 456778899999999887766666655 457999999887778
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..++.+..+|..++..-.+
T Consensus 309 ~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 309 PEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999998777
No 158
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.72 E-value=0.2 Score=39.81 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc
Q 041408 271 SHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 271 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
.-+...|..++..-......-. .-++++++..+.+. +.++|..|..+|+|++....+...--=..+...|..++.+.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555555443332222122 35899999999998 99999999999999986543322111245777788877764
Q ss_pred CCcchHHHHHHHHHHHhC
Q 041408 351 SEKKTTELILGILFHLCS 368 (425)
Q Consensus 351 ~~~~~~e~Al~~L~~L~~ 368 (425)
++.++ .++..|-+|..
T Consensus 81 -d~~Vr-~~a~~Ld~llk 96 (97)
T PF12755_consen 81 -DENVR-SAAELLDRLLK 96 (97)
T ss_pred -chhHH-HHHHHHHHHhc
Confidence 66655 44577777643
No 159
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=2.9 Score=40.44 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhhhchhh----hhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 175 QTKTLIQLEVFAAENERN----RKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 175 ~~~Al~~L~~la~~~~~~----r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
+.-+++.+..+..+++.| ...++.+|..+.++.++...+.++ -..|...+..++.-.+....++.+ ...+
T Consensus 99 KiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeV----AkAAiesikrialfpaaleaiFeS--ellD 172 (524)
T KOG4413|consen 99 KILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEV----AKAAIESIKRIALFPAALEAIFES--ELLD 172 (524)
T ss_pred hhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHH----HHHHHHHHHHHHhcHHHHHHhccc--ccCC
Confidence 344555555555554433 234557899999999997665432 555667777777666555444443 2222
Q ss_pred H--HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 251 S--FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 251 ~--Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
. ++.+--. -|.-+|.....++-.+.+......-.....|++..|..=|+.. .+.-++.........|....
T Consensus 173 dlhlrnlaak------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianciElvteLaete 245 (524)
T KOG4413|consen 173 DLHLRNLAAK------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANCIELVTELAETE 245 (524)
T ss_pred hHHHhHHHhh------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhHHHHHHHHHHHh
Confidence 1 1211111 2233455555666666555544444444568777777777653 36667888888899999999
Q ss_pred CchHHHHhhCchHHHHHHhhccC-CcchHHHHHHHHHHHhCCHhhHHHHhhcc------ccHHHHHHHHhcCChHHHHHH
Q 041408 329 RNRMIMVESGAVFELIELELTAS-EKKTTELILGILFHLCSCADGRAQFLSHR------AAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 329 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~e~Al~~L~~L~~~~e~r~~~~~~~------g~i~~Lv~ll~~~s~~~~e~a 401 (425)
.++..+...|.|..+-.++...+ ++--+-.++-....+... ++-..+.++. .+|....+++-...+..++.|
T Consensus 246 HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 246 HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 99999999999999999886532 343444455544444432 2222221111 112222333333356788888
Q ss_pred HHHHHHHhccCCChHHHHH
Q 041408 402 ILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 402 ~~~L~~l~~~~~~~~~~v~ 420 (425)
+-+|--+.++-.. .++++
T Consensus 325 iDalGilGSnteG-adlll 342 (524)
T KOG4413|consen 325 IDALGILGSNTEG-ADLLL 342 (524)
T ss_pred HHHHHhccCCcch-hHHHh
Confidence 8888777665444 44443
No 160
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.68 E-value=0.083 Score=42.30 Aligned_cols=68 Identities=9% Similarity=-0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhc
Q 041408 175 QTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFE 244 (425)
Q Consensus 175 ~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~ 244 (425)
+...++.|.+++-.++.++..+.+.|+||.+++.-.-. +.++-.++.|+.++.+|+.+.++++.+|..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 34566788899999999999999999999988765322 234567999999999999998888887764
No 161
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.66 E-value=1.7 Score=42.27 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=82.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc---ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA---ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~---~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~ 323 (425)
..++.+.+.++. ++.+.+..|+.++.-++-- ......+. ..+.|.|.+++.+++.++.+|..++.+|.-
T Consensus 86 tL~~~~~k~lkk------g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai 157 (309)
T PF05004_consen 86 TLLDALLKSLKK------GKSEEQALAARALALLALTLGAGEDSEEIF--EELKPVLKRILTDSSASPKARAACLEALAI 157 (309)
T ss_pred HHHHHHHHHhcc------CCHHHHHHHHHHHHHHhhhcCCCccHHHHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHH
Confidence 467778888887 6666666776666665433 12222222 257899999998874456777777777766
Q ss_pred hCCC---C-CchHHHHhhCchHHH--HHHhhccC---------CcchHHHHHHHHHHHhC-CHhh-HHHHhhccccHHHH
Q 041408 324 ACPS---G-RNRMIMVESGAVFEL--IELELTAS---------EKKTTELILGILFHLCS-CADG-RAQFLSHRAAIAVV 386 (425)
Q Consensus 324 L~~~---~-~n~~~iv~~G~v~~L--v~lL~~~~---------~~~~~e~Al~~L~~L~~-~~e~-r~~~~~~~g~i~~L 386 (425)
++.. + +......+ .+..+ ...+..++ +..+...|+.+-.-|.. .+.. ...... ..+|.|
T Consensus 158 ~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l 233 (309)
T PF05004_consen 158 CTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLE--EALPAL 233 (309)
T ss_pred HHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHH
Confidence 6542 1 12221111 22211 11122111 23456666655555554 2221 223323 358999
Q ss_pred HHHHhcCChHHHHH---HHHHHHHHhcc
Q 041408 387 TKRIMQVSPAADDR---AILILSLICKF 411 (425)
Q Consensus 387 v~ll~~~s~~~~e~---a~~~L~~l~~~ 411 (425)
+.+|...+..+|-. ++.+|+.+...
T Consensus 234 ~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 234 SELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99777666665544 45555555553
No 162
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.021 Score=57.02 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=27.4
Q ss_pred ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 87 TAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 87 ~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
.+||.|.|-+.|+++|.+.- .-.||.|+.++.
T Consensus 603 ~tPC~HifH~~CL~~WMd~y--kl~CPvCR~pLP 634 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDTY--KLICPVCRCPLP 634 (636)
T ss_pred ccchHHHHHHHHHHHHHhhh--cccCCccCCCCC
Confidence 45999999999999999854 248999999985
No 163
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.57 E-value=2 Score=38.08 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
.++.+++.+++-|+..-+ .++. ..++.+...|+. .++.+|..|+.+|.+|...+--+.. +.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~---~~ve---~~~~~l~~~L~D------~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~ 66 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP---NLVE---PYLPNLYKCLRD------EDPLVRKTALLVLSHLILEDMIKVK----GQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHHhCc---HHHH---hHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHcCceeeh----hhhhH
Confidence 347888888888775332 2332 578899999997 8999999999999999887654333 23447
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhc
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPSG-RNRMIMVESGAVFELIELELT 349 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~ 349 (425)
.++.+|.+. +++++..|..++..+.... .+. + ...+|.++..|..
T Consensus 67 ~~l~~l~D~--~~~Ir~~A~~~~~e~~~~~~~~~--i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDE--NPEIRSLARSFFSELLKKRNPNI--I--YNNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHHhccchH--H--HHHHHHHHHHHhC
Confidence 888888888 9999999999999988752 222 2 2345555555544
No 164
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.54 E-value=1.2 Score=41.89 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCC-cccHHHHHHHHHhcCCCh-HHHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQ-VGGLEGALSILHFFKITS-EYMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~-~~~~~~Al~~L~~L~~~~-~~~~~~v~~~~g~i~ 250 (425)
...+.|+.-|..+|. +++.|..+.++.+.-.|-.+|...+.... ...+-.++++++.|...+ .+.....-.. +++|
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-Eiip 142 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIP 142 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHH
Confidence 345677888888875 88999999999999889999965543211 123566788888877643 3334444443 8999
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcch-------hHHHHHHHHh-ccccCChHHHHHHHHHHH
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKP-------QIFQNIIRVL-KQRVIAQQGINAALKLML 322 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~-------g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~ 322 (425)
...+.+.. |+.-.|.-|..++..+..++..-.-+.... .++..+|.-| .++ +++.-+...++-.
T Consensus 143 lcLr~me~------GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p--S~RLLKhIIrCYl 214 (262)
T PF04078_consen 143 LCLRIMEF------GSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP--SPRLLKHIIRCYL 214 (262)
T ss_dssp HHHHHHHH------S-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHH
T ss_pred HHHHHHHh------ccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC--ChhHHHHHHHHHH
Confidence 99999998 888899999999999988775433332211 2334444333 455 8899999999999
Q ss_pred HhCCCCCchHHHHh
Q 041408 323 DACPSGRNRMIMVE 336 (425)
Q Consensus 323 ~L~~~~~n~~~iv~ 336 (425)
.|+.++..+..+..
T Consensus 215 RLsdnprar~aL~~ 228 (262)
T PF04078_consen 215 RLSDNPRAREALRQ 228 (262)
T ss_dssp HHTTSTTHHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 99999988887764
No 165
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.47 E-value=0.84 Score=49.20 Aligned_cols=163 Identities=13% Similarity=0.039 Sum_probs=107.6
Q ss_pred hhHHHHHHHHH-HHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 172 PELQTKTLIQL-EVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 172 ~~~~~~Al~~L-~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
...+.+|++.+ ..++.|.+ | .-..|-+++.+.+.+. +...-.---|.+.+...++. .+ -++.
T Consensus 33 ~~~kidAmK~iIa~M~~G~d-----m--ssLf~dViK~~~trd~----ElKrL~ylYl~~yak~~P~~-~l-----LavN 95 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED-----M--SSLFPDVIKNVATRDV----ELKRLLYLYLERYAKLKPEL-AL-----LAVN 95 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC-----h--HHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhccCHHH-HH-----HHHH
Confidence 45577777655 45554433 0 1234555555553332 11222222333344433321 11 2566
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCc
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRN 330 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n 330 (425)
.+.+=+++ .|+..|..|++++..+=.. .. -..+++++.+++.++ ++.+|+.|+-++.++=.- +
T Consensus 96 ti~kDl~d------~N~~iR~~AlR~ls~l~~~------el-~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~l--d 158 (757)
T COG5096 96 TIQKDLQD------PNEEIRGFALRTLSLLRVK------EL-LGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRL--D 158 (757)
T ss_pred HHHhhccC------CCHHHHHHHHHHHHhcChH------HH-HHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhc--C
Confidence 77777777 8999999999998765321 11 135789999999999 999999999999988653 3
Q ss_pred hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 331 RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
+....+.|.+-.+..++.+. ++.++..|+.+|..+...
T Consensus 159 ~~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 159 KDLYHELGLIDILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 44567889999999999886 999999999999988764
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.45 E-value=5.8 Score=43.52 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=136.9
Q ss_pred HHHHHHHHHhcC------hhHHHH-HHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCC----cccHHHHHHHH
Q 041408 160 LQIIKLIKDIWK------PELQTK-TLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQ----VGGLEGALSIL 228 (425)
Q Consensus 160 ~~i~~lv~~l~s------~~~~~~-Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~----~~~~~~Al~~L 228 (425)
+++..++..+.+ ...... .++-|+..+ .-..||+.+.+.|+++.|+..|.....+.. ....+.-+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 445555555521 223333 344444444 468999999999999999999864333211 23345555555
Q ss_pred HhcCCChHHHHh-----hhhc------hhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHH
Q 041408 229 HFFKITSEYMKL-----SAFE------IDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIF 297 (425)
Q Consensus 229 ~~L~~~~~~~~~-----~v~~------~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i 297 (425)
-.|......... .... ...-+..+...+.+ .....++.+....+++|-+|+.++.......++ .+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s--~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F 271 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNS--PFVRSNPQILQALARILPFLTYGNEEKMDALVE--HF 271 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcC--ccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HH
Confidence 444322211100 0000 11236666666654 111245777788889999999888766554332 23
Q ss_pred HHHHHHhccc-cCChHHHHHHHHHHHHhCCC----C---CchHHHHhhCchHHHHHHhhcc-C--------------Ccc
Q 041408 298 QNIIRVLKQR-VIAQQGINAALKLMLDACPS----G---RNRMIMVESGAVFELIELELTA-S--------------EKK 354 (425)
Q Consensus 298 ~~Lv~lL~~~-~~~~~~~~~A~~aL~~L~~~----~---~n~~~iv~~G~v~~Lv~lL~~~-~--------------~~~ 354 (425)
.+.+++=+-. ..+++. ...+..++.++.+ . .-|..+++.|++...++.|... + ...
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 3333321111 001111 2334555555432 1 2577889999999999988653 1 123
Q ss_pred hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC--hHHHHHHHHHHHHHhccCCChHHHHHH
Q 041408 355 TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS--PAADDRAILILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s--~~~~e~a~~~L~~l~~~~~~~~~~v~e 421 (425)
....++..|.-||.....-+..+. ..+++.+-+ |-..+ ...-..|=.+|-.|+.+..- ...|++
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~lH~-LEqvss~~~IGslAEnlLeal~~~~~v-~~~I~~ 416 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIA-EQLLPLLHR-LEQVSSEEHIGSLAENLLEALAENEDV-AKKIQN 416 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHH-hhHHHHHHH-hhcCCCccchHHHHHHHHHHHhcChhH-HHHHHH
Confidence 455678888889885554444444 456766666 54443 23444566666777765443 334443
No 167
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.021 Score=55.75 Aligned_cols=60 Identities=25% Similarity=0.481 Sum_probs=45.5
Q ss_pred ccCcCCccCCCCce-----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHH
Q 041408 73 FICPISLQIMKDPV-----TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRL 134 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV-----~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~ 134 (425)
-+||||.+-..-|+ .+.|||-|--.||++|+-.. -...||.|...-.. .++.+-.++|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~-~~~~cp~c~~katk-r~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKK-TKMQCPLCSGKATK-RQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhh-hhhhCcccCChhHH-HHHHHHHHHHHH
Confidence 57999999888886 45799999999999999532 24679999766555 566666655443
No 168
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.33 E-value=0.063 Score=36.90 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=32.3
Q ss_pred cCcCCcc--CCCCceecCCC-----ccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 74 ICPISLQ--IMKDPVTAITG-----ITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 74 ~Cpi~~~--~m~dPV~~~~g-----~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
.|-||++ .-.+|.+.||. +.+=+.|+++|+...+ ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-CCcCCCCC
Confidence 3778875 45677788875 6688999999998754 56899985
No 169
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4.1 Score=43.77 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=45.3
Q ss_pred CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHH------------------HHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 351 SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAV------------------VTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 351 ~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~------------------Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
++..+.+.|+.+|.....++++--+.+ |+.. +++-|.......+.+|+.+++.|-..+
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 356788888888888877655443332 1223 334344445567888999998888776
Q ss_pred CChHHHHHHhh
Q 041408 413 GNFNFVVQEMS 423 (425)
Q Consensus 413 ~~~~~~v~e~~ 423 (425)
.- +.+|+|++
T Consensus 382 Nv-~~mv~eLl 391 (866)
T KOG1062|consen 382 NV-RVMVKELL 391 (866)
T ss_pred cH-HHHHHHHH
Confidence 66 88888876
No 170
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.97 E-value=0.54 Score=42.37 Aligned_cols=126 Identities=8% Similarity=-0.015 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhch--------------hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEI--------------DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS 286 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~--------------~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~ 286 (425)
...++.+|.||+..+.....++... +..+..|+..+............--...+.++.|++...+.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 4566777777777666555443321 13577777777541000011233456789999999999988
Q ss_pred hhHhhcch-hH--HHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh---hCchHHHHHHhh
Q 041408 287 KFLQRLKP-QI--FQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE---SGAVFELIELEL 348 (425)
Q Consensus 287 ~~~~~~~~-g~--i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~---~G~v~~Lv~lL~ 348 (425)
+..+.... +. +..|+..+... +..=|..++.+|.|+|...+....+.. -+++|.|+--|.
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 88765443 33 56666666666 777888999999999998877777765 356666655554
No 171
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.83 E-value=1.7 Score=44.10 Aligned_cols=124 Identities=14% Similarity=0.215 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHHHhccc----chhHhhcchhHHHHHHHHhcccc-----CChHHHHHHHHHHHHhCCCCC--chHH
Q 041408 265 NHKEIKSHALRILKNIIQAAS----SKFLQRLKPQIFQNIIRVLKQRV-----IAQQGINAALKLMLDACPSGR--NRMI 333 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~----~~~~~~~~~g~i~~Lv~lL~~~~-----~~~~~~~~A~~aL~~L~~~~~--n~~~ 333 (425)
.+.+.|=.|.-....++.+++ +++.+...-| ++.+=++|..++ .+...+.-+...|.-+|+.++ ....
T Consensus 23 k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~ 101 (698)
T KOG2611|consen 23 KRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEE 101 (698)
T ss_pred cChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 455555556666666666554 3333333333 578888886541 123457788888999999775 5566
Q ss_pred HHhhCchHHHHHHhhccCCcc------hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC
Q 041408 334 MVESGAVFELIELELTASEKK------TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 334 iv~~G~v~~Lv~lL~~~~~~~------~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
+++ .||.|.+.+..+.|+. +.+.+...|..++..+.|.+.++. .||++++-+ +..+
T Consensus 102 ~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q-~y~~ 163 (698)
T KOG2611|consen 102 MVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQ-MYEL 163 (698)
T ss_pred HHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHH-HHhC
Confidence 664 7999999998765554 889999999999999889998876 788999987 4443
No 172
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.62 E-value=0.55 Score=42.30 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHh----------------hCchHHHHHHhhcc-----CCcchHHHHHHHHHHHhCC
Q 041408 311 QQGINAALKLMLDACPSGRNRMIMVE----------------SGAVFELIELELTA-----SEKKTTELILGILFHLCSC 369 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~~n~~~iv~----------------~G~v~~Lv~lL~~~-----~~~~~~e~Al~~L~~L~~~ 369 (425)
......++..|.||+..++....+.+ ..++..|++.+..+ ....-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34556677888888887776665543 23677788877662 1345667889999999999
Q ss_pred HhhHHHHhhccccHHHHHH---HHhcCChHHHHHHHHHHHHHhccCCChH
Q 041408 370 ADGRAQFLSHRAAIAVVTK---RIMQVSPAADDRAILILSLICKFSGNFN 416 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv~---ll~~~s~~~~e~a~~~L~~l~~~~~~~~ 416 (425)
+++|..++....+...+.+ .+.+.|..-+.-++++|.|+|=....+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~ 138 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHE 138 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHH
Confidence 9999999876655543333 3334466777789999999997655533
No 173
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.59 E-value=0.34 Score=43.14 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred chHHHHhhCchHHHHHHhhcc--------CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHH
Q 041408 330 NRMIMVESGAVFELIELELTA--------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~--------~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a 401 (425)
=...+++.|++..|+++|..- .+......++..|..|.....|+..++.+.+++..++..|...+...+..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 456778889999999988542 123567778999999999999999999999999999998888888999999
Q ss_pred HHHHHHHh
Q 041408 402 ILILSLIC 409 (425)
Q Consensus 402 ~~~L~~l~ 409 (425)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
No 174
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.58 E-value=0.54 Score=37.39 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=51.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.+++.++..+.. .+..+|-.|+.+|.+++..-......- -..+++.|.+++.+. ++.++..| ..|-+|
T Consensus 27 ~Il~pVL~~~~D------~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~--d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDD------QDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP--DENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC--chhHHHHH-HHHHHH
Confidence 588999999986 899999999999999987654433321 236788999999887 77766655 555443
No 175
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.50 E-value=0.86 Score=48.40 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=99.4
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH--hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL--QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
++..+.+.|++ .++.+|.+|+.++..++..-..+.. ....-|. .|..-|... +|++--.-+.||..++
T Consensus 800 i~stiL~rLnn------ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee--ypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 800 ICSTILWRLNN------KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE--YPEVLGSILGAIKAIV 869 (1172)
T ss_pred HHHHHHHHhcC------CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc--cHHHHHHHHHHHHHHH
Confidence 45667888887 8999999999999999875544421 1112232 355555555 7877776666666665
Q ss_pred CCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHH
Q 041408 326 PSGR-NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILI 404 (425)
Q Consensus 326 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~ 404 (425)
..-. .+..==-.|.+|.|.-+|.+. +.++++.....+..+|..+....-..+=-..---|+++|+...-..+..|+..
T Consensus 870 nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4321 111111247889999999886 88999999999999997432221111111123367777776666778888888
Q ss_pred HHHHhccCC
Q 041408 405 LSLICKFSG 413 (425)
Q Consensus 405 L~~l~~~~~ 413 (425)
+-.+++-=+
T Consensus 949 fG~IakaIG 957 (1172)
T KOG0213|consen 949 FGYIAKAIG 957 (1172)
T ss_pred hhHHHHhcC
Confidence 877776433
No 176
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.49 E-value=5.5 Score=38.79 Aligned_cols=194 Identities=12% Similarity=-0.007 Sum_probs=100.9
Q ss_pred HHHHHHHh--cChhHHHHHHHHHHHHhhhchhhhhHHhh--cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC---
Q 041408 162 IIKLIKDI--WKPELQTKTLIQLEVFAAENERNRKCMAE--AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT--- 234 (425)
Q Consensus 162 i~~lv~~l--~s~~~~~~Al~~L~~la~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~--- 234 (425)
+...+..+ ++...+..++..+..+...+... ..+.+ .-.++.+.+.++.+.. ..+..|+.++..++..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~----~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKS----EEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHhhhcCC
Confidence 44444444 34577888888886665443221 22221 2345566666655432 2255666666665432
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHH--Hhcccc---
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIR--VLKQRV--- 308 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~--lL~~~~--- 308 (425)
.+....++. ...|.|..++... ..++..|..++.+|.-++.....-. .+......+..+.. .++.+.
T Consensus 120 g~~~~ei~~---~~~~~L~~~l~d~----s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~ 192 (309)
T PF05004_consen 120 GEDSEEIFE---ELKPVLKRILTDS----SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAP 192 (309)
T ss_pred CccHHHHHH---HHHHHHHHHHhCC----ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 122234443 5778888888751 2345666777766666654321111 11100112332222 222210
Q ss_pred -----CChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 309 -----IAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 309 -----~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++.+..+|+.+-.-|.. .+.....-.-...+|.|+.+|.+. +..++-.|-.+|+-|..
T Consensus 193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 124566666655544443 233222222235799999999886 88888888888777754
No 177
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.48 E-value=0.87 Score=42.81 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHh-CCHhhHHHHhhccccHHHHHHH
Q 041408 312 QGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLC-SCADGRAQFLSHRAAIAVVTKR 389 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~-~~~e~r~~~~~~~g~i~~Lv~l 389 (425)
...-.|+.+|--+|. ++..+..+.+...+..|+++|.....+.++-.++.+|..+. ..+.|...+ +..+|+..++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~F-E~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDF-EELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHH-HHhCCHHHHHHH
Confidence 345567788888886 77899999999999999999954336778888888877765 477788777 567889999997
Q ss_pred HhcC--ChHHHHHHHHHHHHHhcc
Q 041408 390 IMQV--SPAADDRAILILSLICKF 411 (425)
Q Consensus 390 l~~~--s~~~~e~a~~~L~~l~~~ 411 (425)
++.. +...+-..+..|+.....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 7765 346677788888766543
No 178
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=4.4 Score=43.33 Aligned_cols=157 Identities=10% Similarity=0.061 Sum_probs=94.1
Q ss_pred chHHHHHHHHccccc-cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDE-SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
+.+|.|+.+|.+..| ..+.+...-..|..+|.-++..-.+.+. ..++|.+=.-++++ +-+-+++|+.++...-
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv----~~Vl~Fiee~i~~p--dwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV----PHVLPFIEENIQNP--DWRNREAAVMAFGSIL 392 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch----hhhHHHHHHhcCCc--chhhhhHHHHHHHhhh
Confidence 578888888875222 1122233344454555444432221111 12344444456676 8899999999999887
Q ss_pred CCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHH
Q 041408 326 PSGR-NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAIL 403 (425)
Q Consensus 326 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~ 403 (425)
..++ .+..-.-.+++|.++.++.+. .--++..+.++|..++. .++-+--..--..-+..+++-|. ..+....++.+
T Consensus 393 ~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CW 470 (859)
T KOG1241|consen 393 EGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCW 470 (859)
T ss_pred cCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHH
Confidence 7553 555545668999999999864 66677888999999987 33222111111123445555332 24566778888
Q ss_pred HHHHHhcc
Q 041408 404 ILSLICKF 411 (425)
Q Consensus 404 ~L~~l~~~ 411 (425)
++.+|+.+
T Consensus 471 Af~~Laea 478 (859)
T KOG1241|consen 471 AFISLAEA 478 (859)
T ss_pred HHHHHHHH
Confidence 88888743
No 179
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.059 Score=50.52 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred cCcCCc-cCCCCcee----cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 74 ICPISL-QIMKDPVT----AITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 74 ~Cpi~~-~~m~dPV~----~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.||.|+ +....|-+ -+|||+.|.+|...-|..| ...||.|+.++-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g--~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG--PAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC--CCCCCcccchhhh
Confidence 499998 56666652 2899999999999999987 5899999988743
No 180
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.33 E-value=0.035 Score=53.95 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=40.1
Q ss_pred cCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.|-||-+-=+|--+-||||-.|-.|+..|....+ ..+||+||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-GQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCC-CCCCCceeeEecc
Confidence 6999999888877779999999999999997653 4799999977754
No 181
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.28 E-value=0.061 Score=50.82 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=37.4
Q ss_pred cccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 72 ~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
-|+||+..+.-.| ||++.|||...+..+..--++|...+.||-|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4899999987765 89999999999999988777664457799884
No 182
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.19 E-value=1 Score=39.96 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=74.9
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHhhhc-hhhhhHHhhcCcHHHHHHHHhhcccCC-----CcccHHHHHHHHHhcCCC
Q 041408 161 QIIKLIKDIWKPELQTKTLIQLEVFAAEN-ERNRKCMAEAGVPRAMLTYIVNCCDKN-----QVGGLEGALSILHFFKIT 234 (425)
Q Consensus 161 ~i~~lv~~l~s~~~~~~Al~~L~~la~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~-----~~~~~~~Al~~L~~L~~~ 234 (425)
....++..+.+.....+.+..|+..-... ......+++.||+..|+.+|....... +......++..|..+.-.
T Consensus 67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 34456666655443346666665443333 234456667899999999996543211 113456678888888777
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNII 281 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~ 281 (425)
......++.. ++++..++..|.+ .+..++..++.+|..+|
T Consensus 147 ~~G~~~v~~~-~~~v~~i~~~L~s------~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSH-PDSVNLIALSLDS------PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCS-SSHHHHHHHT--T------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cHHHHHHHHHHCC------CCHHHHHHHHHHHHHHH
Confidence 7666666664 5999999999987 89999999999998876
No 183
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.058 Score=52.74 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCcccCcCCccCCCCce-----e---cCCCccccHHHHHHHHHcCC----CCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPV-----T---AITGITYDRESIEHWLFQGN----NNAECPVTKQPLP 120 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV-----~---~~~g~t~~r~~I~~~~~~~~----~~~~cP~~~~~l~ 120 (425)
-.+..|-||++...+++ . .+|.|+||..||..|-.... -.+.||+|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999999998 3 46999999999999985432 1368999997764
No 184
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.06 E-value=2.1 Score=44.03 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=98.8
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccC--ChHHHHHHHHHHHHhCCCC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVI--AQQGINAALKLMLDACPSG 328 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--~~~~~~~A~~aL~~L~~~~ 328 (425)
.+..++.+ ++...+..|...|..++........+... ..+..|.+++.++.. +.......++++..|-...
T Consensus 87 ~i~e~l~~------~~~~~~~~a~k~l~sls~d~~fa~efi~~-~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg 159 (713)
T KOG2999|consen 87 RIMEILTE------GNNISKMEALKELDSLSLDPTFAEEFIRC-SGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG 159 (713)
T ss_pred HHHHHHhC------CCcHHHHHHHHHHhhccccHHHHHHHHhc-chHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence 45556776 78888888888888877665554444433 458999999998811 2233444444444443222
Q ss_pred CchHHHHhhCchHHHHHHhhcc-CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHH
Q 041408 329 RNRMIMVESGAVFELIELELTA-SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSL 407 (425)
Q Consensus 329 ~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~ 407 (425)
-..-..+....|...+.+..-. -+..+-..|+..|.++..+.....+.+.+.--+..|+..+..++...+-+|.++|-.
T Consensus 160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1111111112222233333111 156678899999999998666444444446668999998888888888889999999
Q ss_pred HhccCCCh
Q 041408 408 ICKFSGNF 415 (425)
Q Consensus 408 l~~~~~~~ 415 (425)
+....++.
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 98877774
No 185
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.06 E-value=10 Score=38.11 Aligned_cols=128 Identities=9% Similarity=0.123 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhccc-cCChHHHHHHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhh-cc--CCcchHHHHHHHHHHHhC
Q 041408 294 PQIFQNIIRVLKQR-VIAQQGINAALKLMLDACPSG-RNRMIMVESGAVFELIELEL-TA--SEKKTTELILGILFHLCS 368 (425)
Q Consensus 294 ~g~i~~Lv~lL~~~-~~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~-~~--~~~~~~e~Al~~L~~L~~ 368 (425)
..++..|-.++++. ..-+.+-..|+..+..+..++ ..-..+.++|.++.+++.+. .+ ++.++.-..-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 44666777777765 224567788889999988865 57777789999999999998 43 356677777789999999
Q ss_pred CHhhHHHHhhccccHHHHHHHHhcCCh-------HHHHHHHHHHHHHhccCCChHHHHHHh
Q 041408 369 CADGRAQFLSHRAAIAVVTKRIMQVSP-------AADDRAILILSLICKFSGNFNFVVQEM 422 (425)
Q Consensus 369 ~~e~r~~~~~~~g~i~~Lv~ll~~~s~-------~~~e~a~~~L~~l~~~~~~~~~~v~e~ 422 (425)
+..|.+++.+ .+.++.+.+.+.+... +....--..+-.|.+|.+..+..+.++
T Consensus 185 N~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 185 NNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred CHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999977 5789999996654311 111223345678888888876554443
No 186
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.05 E-value=0.15 Score=31.22 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
++|.|++++.++ ++++|..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~--~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP--SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S--SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 479999999999 99999999999998864
No 187
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.91 E-value=0.02 Score=60.04 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=37.2
Q ss_pred ccCcCCccCCCCceec---CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTA---ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~---~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-.||+|..-+.|-.+. +|+|.||..||..|..-. .+||.|+..|..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA---QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc---ccCchhhhhhhe
Confidence 4788888888777643 699999999999998763 799999988754
No 188
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=16 Score=39.14 Aligned_cols=196 Identities=9% Similarity=0.058 Sum_probs=112.4
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
.+..|.++|++.... .+-.|+.-+..|++.... ...+.. -.+.++..|+. +.+..+|+.|+.+|+.+
T Consensus 330 ~~~~Lg~fls~rE~N----iRYLaLEsm~~L~ss~~s-~davK~---h~d~Ii~sLkt-----erDvSirrravDLLY~m 396 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETN----IRYLALESMCKLASSEFS-IDAVKK---HQDTIINSLKT-----ERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHHHhhccccc----chhhhHHHHHHHHhccch-HHHHHH---HHHHHHHHhcc-----ccchHHHHHHHHHHHHH
Confidence 455667777655432 266677777776665433 233332 25677788885 48899999999999999
Q ss_pred HhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHH--------------HhhCchHHHHH
Q 041408 281 IQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIM--------------VESGAVFELIE 345 (425)
Q Consensus 281 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~i--------------v~~G~v~~Lv~ 345 (425)
|..+..+. ++..|++-|... ++..|+.-+-=+.-|+. ....-... +..++--.+++
T Consensus 397 cD~~Nak~-------IV~elLqYL~tA--d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQ 467 (938)
T KOG1077|consen 397 CDVSNAKQ-------IVAELLQYLETA--DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQ 467 (938)
T ss_pred hchhhHHH-------HHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhe
Confidence 98654332 355677777777 78888876655555553 22111111 11233333444
Q ss_pred HhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccH--------------------HHHHHHHhcCChHHHHHHHHHH
Q 041408 346 LELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAI--------------------AVVTKRIMQVSPAADDRAILIL 405 (425)
Q Consensus 346 lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i--------------------~~Lv~ll~~~s~~~~e~a~~~L 405 (425)
..-. +++++..|+..+......+...+.++..+|.| ..|-+.+...|+..+-.-+...
T Consensus 468 iVvN--nedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTy 545 (938)
T KOG1077|consen 468 IVVN--NEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTY 545 (938)
T ss_pred eEec--chhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 3332 56788888887777666555555444422211 1111222222445555666777
Q ss_pred HHHhccCCChHHHHH
Q 041408 406 SLICKFSGNFNFVVQ 420 (425)
Q Consensus 406 ~~l~~~~~~~~~~v~ 420 (425)
-.++...++.+.-|+
T Consensus 546 iKl~nl~PEi~~~v~ 560 (938)
T KOG1077|consen 546 IKLINLFPEIKSNVQ 560 (938)
T ss_pred HHHHhhChhhhHHHH
Confidence 777777776544444
No 189
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.094 Score=51.01 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=36.4
Q ss_pred CCcccCcCCccCCCCce-----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPV-----TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV-----~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
|-...|.||-+.+ +-+ +-.|||+|.-.|+.+||.....+..||.|+-.+..
T Consensus 2 pi~A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 3345799995544 333 22599999999999999865423689999855544
No 190
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.52 E-value=1 Score=40.06 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHH
Q 041408 266 HKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIE 345 (425)
Q Consensus 266 ~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~ 345 (425)
++.+|.+++-++..|+..-++-. ...++.+...|+++ ++.+|+.|+.+|..|...+--+. +...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKV---KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHH
Confidence 46788999999999987554322 25689999999999 99999999999999987543221 1222367777
Q ss_pred HhhccCCcchHHHHHHHHHHHhCC
Q 041408 346 LELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 346 lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
+|.+. ++.++..|...+..+...
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHh
Confidence 77665 888999999999888775
No 191
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.30 E-value=0.079 Score=36.93 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=32.6
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..|=.|...=...++++|||..++.|-.-+ . ..-||+|+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---R--YNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh---h--ccCCCCCCCcccC
Confidence 345566777677889999999999884322 1 3569999999865
No 192
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.24 E-value=0.72 Score=38.00 Aligned_cols=71 Identities=7% Similarity=0.021 Sum_probs=57.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
..+..|+.+|.. +.++.+..-|+.-|..++..-+..+.+....|+-..++.++.++ +++++..|+.++..+
T Consensus 43 ~llk~L~~lL~~-----s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDK-----SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE--DPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-S-----HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-----CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 578899999964 26777888889999999887777666666778889999999998 999999999998765
No 193
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=3.8 Score=43.55 Aligned_cols=121 Identities=13% Similarity=0.182 Sum_probs=87.9
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP- 326 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~- 326 (425)
.-+-++.+|++ ..+-+|..|+.+|+.+.--=. -++. -++|.|+.-|.++ +|.++.+|..+++.|+.
T Consensus 145 La~Dv~tLL~s------skpYvRKkAIl~lykvFLkYP----eAlr-~~FprL~EkLeDp--Dp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 145 LADDVFTLLNS------SKPYVRKKAILLLYKVFLKYP----EALR-PCFPRLVEKLEDP--DPSVVSAAVSVICELARK 211 (877)
T ss_pred HHHHHHHHHhc------CchHHHHHHHHHHHHHHHhhh----HhHh-hhHHHHHHhccCC--CchHHHHHHHHHHHHHhh
Confidence 45567888988 788899999999998864221 2333 4689999999999 99999999999999998
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhc
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~ 392 (425)
++.|--.+. |.+.++|.+.++.=+.-..+....+|+. .+--.++ -+++|.+++-+
T Consensus 212 nPknyL~LA-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK------Lieplt~li~s 267 (877)
T KOG1059|consen 212 NPQNYLQLA-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK------LIEPITELMES 267 (877)
T ss_pred CCccccccc-----HHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh------hhhHHHHHHHh
Confidence 777765554 8888888765444455566777777776 3322222 35677776643
No 194
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.094 Score=50.77 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=38.1
Q ss_pred CCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
+.+.|..-.|-||.+-..+-+.+||||+.| |+.-... .+.||.|++..
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH----LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh----CCCCchhHHHH
Confidence 346677789999999999999999999988 6554433 36799998754
No 195
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.05 E-value=0.04 Score=41.00 Aligned_cols=49 Identities=20% Similarity=0.458 Sum_probs=23.3
Q ss_pred cccCcCCccCCC-C---ceec----CCCccccHHHHHHHHHcC--CC---C---CCCCCCCCCCC
Q 041408 72 YFICPISLQIMK-D---PVTA----ITGITYDRESIEHWLFQG--NN---N---AECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~-d---PV~~----~~g~t~~r~~I~~~~~~~--~~---~---~~cP~~~~~l~ 120 (425)
+..|+||...+. + |+.. .|+++|=..|+.+||... .. . ..||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 2 5543 488999999999999742 10 1 25999998764
No 196
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=92.01 E-value=1.1 Score=46.04 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccC----CcchHHHHHHHHHHHhC-CHhhHHHHhhcccc
Q 041408 309 IAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTAS----EKKTTELILGILFHLCS-CADGRAQFLSHRAA 382 (425)
Q Consensus 309 ~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~----~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~ 382 (425)
.++.+...|+++|+|+.. ++..|..+++.|..+.+++.|.... +.+..-....+|.-++. ..+.+.+++.+.+|
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 378999999999999997 4568889999999999999998751 45566677788877765 77889888887788
Q ss_pred HHHHHHHHhcC----C-------------hHHHHHHHHHHHHHhccCCC
Q 041408 383 IAVVTKRIMQV----S-------------PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 383 i~~Lv~ll~~~----s-------------~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..++..|... + ...--.++++|.++..+.+.
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 88888766432 1 11233577888888777665
No 197
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.94 E-value=0.26 Score=39.63 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=29.6
Q ss_pred CCCCCCCcccCcCCccCCCCcee--cCCCccccHHHHH
Q 041408 65 QDIEIPEYFICPISLQIMKDPVT--AITGITYDRESIE 100 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV~--~~~g~t~~r~~I~ 100 (425)
....+.+.-.|++|++.+.+++. .||||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45578888899999999988874 4999999888864
No 198
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=91.87 E-value=0.16 Score=46.07 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=42.7
Q ss_pred ccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCC--CCCCCCCCCCCCccHHH
Q 041408 73 FICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPV--TKQPLPKDLDLTPNHTL 131 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~--~~~~l~~~~~l~pn~~l 131 (425)
.+||||.+...-|++. .|+|.|++..|..++.-.- ...||. |.+.... +.+..++-|
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~-trvcp~~~Csq~~~~-~~~v~d~Il 249 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVEC-TRVCPRLICSQKEVV-DPYVCDHIL 249 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCc-eeecchhhcchheec-cchhhhHHH
Confidence 5899999999999875 7999999999999997321 356887 6555554 455555544
No 199
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.70 E-value=0.082 Score=56.61 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=39.1
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+.|++|.+ ..+|+++.|||.||+.|+.+.+.... ...||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-NAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc-CCCCcHHHHHHH
Confidence 89999999 88888999999999999999998653 346999986554
No 200
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=21 Score=38.33 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=92.5
Q ss_pred HHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHH
Q 041408 162 IIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMK 239 (425)
Q Consensus 162 i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~ 239 (425)
++.|+..|.+ +.++..|+..++.|+..+|.|--. .-|.+-++|...+ ..++ .-..+.+.++|+.-++..
T Consensus 183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSs-NNWm--LIKiiKLF~aLtplEPRL- 253 (877)
T KOG1059|consen 183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSS-NNWV--LIKLLKLFAALTPLEPRL- 253 (877)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccC-CCee--hHHHHHHHhhccccCchh-
Confidence 4455555543 356666666777777666655322 2355566654322 1222 455556666666554432
Q ss_pred hhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHH---------hcccchhHhhcchhHHHHHHHHhccccCC
Q 041408 240 LSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNII---------QAASSKFLQRLKPQIFQNIIRVLKQRVIA 310 (425)
Q Consensus 240 ~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~---------~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 310 (425)
+. ..+++|..++.+ ..|..+|+.+. .+.++....+ .=++.-|-.++.+. +
T Consensus 254 ---gK--KLieplt~li~s------------T~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fieds--D 312 (877)
T KOG1059|consen 254 ---GK--KLIEPITELMES------------TVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDS--D 312 (877)
T ss_pred ---hh--hhhhHHHHHHHh------------hHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcC--C
Confidence 11 466677777765 23444444332 1211111100 11345555555555 6
Q ss_pred hHHHHHHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 311 QQGINAALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
+..+=-++-++..+.... ..... --..++..|.+. |..++-.|+..|.-++...
T Consensus 313 qNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 313 QNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLYGMVSKK 367 (877)
T ss_pred ccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHHHHhhhh
Confidence 777777777777766532 21111 113456777776 8889999999999887744
No 201
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.39 E-value=0.43 Score=44.05 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=64.1
Q ss_pred cHHHHHHHHHhcCCChHHHHhhhhchh-----chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-Hhhcc
Q 041408 220 GLEGALSILHFFKITSEYMKLSAFEID-----KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLK 293 (425)
Q Consensus 220 ~~~~Al~~L~~L~~~~~~~~~~v~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~ 293 (425)
.+..|+.+|..|+..+.+..-+++..+ ..+..|+++|.. .+++-.|+-|+.+|.+|+.+++... .++.+
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~-----~e~~v~REfAvvlL~~La~~~~~~~r~iA~q 214 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM-----REDQVCREFAVVLLSNLAQGDEAAARAIAMQ 214 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 489999999999987766544444311 245566777765 4888899999999999999887654 56777
Q ss_pred hhHHHHHHHHhccc
Q 041408 294 PQIFQNIIRVLKQR 307 (425)
Q Consensus 294 ~g~i~~Lv~lL~~~ 307 (425)
.++|..|+.++.+.
T Consensus 215 ~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 215 KPCISHLIAFIEDA 228 (257)
T ss_pred hchHHHHHHHHHHH
Confidence 89999999999876
No 202
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.33 E-value=1.1 Score=37.24 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=44.0
Q ss_pred CcccCcCCccCCCCceec----CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTA----ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~----~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.-+.|-||++.-.|+-.+ .||.+.|-.|--+-|+...-++.||.|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 668899999999999877 389999999999988865556899999998865
No 203
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.92 E-value=3.8 Score=42.86 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFEL 343 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~L 343 (425)
++...+.-|+..+...-..-++-. ..+|..+++|..+. +..+|..|.+.|..+|.. .+...+++ ..|
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kva-----DvL 101 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVL 101 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHH
Confidence 556666666666665554433222 24677888888887 888999999999999984 46666655 578
Q ss_pred HHHhhccCCcchHHHHHHHHHHHhC
Q 041408 344 IELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 344 v~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++||.+. +..-...+-.+|..|..
T Consensus 102 ~QlL~td-d~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 102 VQLLQTD-DPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHh
Confidence 8888875 54444444445554443
No 204
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.91 E-value=0.56 Score=38.64 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=56.4
Q ss_pred CchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 338 GAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 338 G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.++..|+++|....|+.....|+.=|..++. .++||..+ +..|+-..++++|.+.++.++..|+.++-.|-.+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii-~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNII-EKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHH-HHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHH-HhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4667899999544377778888888999987 77887766 6688888899988888899999999998776543
No 205
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.78 E-value=0.2 Score=34.05 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=21.0
Q ss_pred CcCCccCCCCce---ec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 75 CPISLQIMKDPV---TA--ITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 75 Cpi~~~~m~dPV---~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
||+|.+.| |.. .. +||.-+||-|..+..... ...||-||+++
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENE--GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS---SB-TTT--B-
T ss_pred CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhcc--CCCCCCCCCCC
Confidence 78998888 433 34 589999999988777643 46899999875
No 206
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.56 E-value=2.1 Score=37.18 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=86.2
Q ss_pred HHHHHHHHhh-cccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 202 PRAMLTYIVN-CCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 202 i~~Lv~lL~s-~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
+..+++.|.. ... ...+..|+-++..+- +..+....+ -+-+.+-..+.. ++.+....+..++..|
T Consensus 5 l~~lL~~L~~~~~~---~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~------~~~d~~i~~~~~l~~l 70 (157)
T PF11701_consen 5 LDTLLTSLDMLRQP---EEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDE------GEMDSLIIAFSALTAL 70 (157)
T ss_dssp CCHHHHHHHCTTTS---CCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCC------HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCC---HhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHcc------ccchhHHHHHHHHHHH
Confidence 3445555543 211 133666666666552 222222221 223333444443 3334667777777777
Q ss_pred Hhcccch-hHhhcchhHHHHHHHHhc--cccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcc-hH
Q 041408 281 IQAASSK-FLQRLKPQIFQNIIRVLK--QRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKK-TT 356 (425)
Q Consensus 281 ~~~~~~~-~~~~~~~g~i~~Lv~lL~--~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~ 356 (425)
-...... ..+....|+++.++.++. .. +...+..++.+|..-|....-|..+. ..+++.|-+++...++.. ++
T Consensus 71 fp~~~dv~~~l~~~eg~~~~l~~~~~~~~~--~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir 147 (157)
T PF11701_consen 71 FPGPPDVGSELFLSEGFLESLLPLASRKSK--DRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIR 147 (157)
T ss_dssp CTTTHHHHHHHCCTTTHHHHHHHHHH-CTS---HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CH
T ss_pred hCCCHHHHHHHHhhhhHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHH
Confidence 5554433 244556799999999998 54 88888899998888776555555444 457799999996543444 67
Q ss_pred HHHHHHHHH
Q 041408 357 ELILGILFH 365 (425)
Q Consensus 357 e~Al~~L~~ 365 (425)
..|+-+|..
T Consensus 148 ~~A~v~L~K 156 (157)
T PF11701_consen 148 VLAAVGLCK 156 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666654
No 207
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.41 E-value=2.4 Score=37.12 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
..+..+..+|++ ++.+.|-.++.++..++.............-.+..|+.+|+.. ..+...+.+..+|..+..
T Consensus 25 ~l~~ri~~LL~s------~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 25 KLVTRINSLLQS------KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHhCC------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence 466778888987 7888888898888888876543333222234788999999876 466788888888877764
Q ss_pred C----CCchHHHHh---hCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 327 S----GRNRMIMVE---SGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 327 ~----~~n~~~iv~---~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
. ++-..++.- .+.++.++.++.+ ....+.++.+|..+-.
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP 143 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 3 333333322 2445555555542 3456666777766654
No 208
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.36 E-value=2.5 Score=39.84 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC-CCCCchHHHHhhCchHHHHH
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC-PSGRNRMIMVESGAVFELIE 345 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~-~~~~n~~~iv~~G~v~~Lv~ 345 (425)
......|..+|.-++-.....+.++.....+..|+++|... ..+..+.+++.+|..+. .++.|...+-+.|++..++.
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 33456788999999988887777777778899999999432 26788888988887554 57889999999999999999
Q ss_pred HhhccC-CcchHHHHHHHHHHHhC
Q 041408 346 LELTAS-EKKTTELILGILFHLCS 368 (425)
Q Consensus 346 lL~~~~-~~~~~e~Al~~L~~L~~ 368 (425)
++.+.+ +.+++-+.+.-|.-...
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 998752 45666666776665543
No 209
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.31 E-value=7.4 Score=37.98 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=80.1
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcc-ccCChHHHHHHHHHHHHhCCC
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQ-RVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~~A~~aL~~L~~~ 327 (425)
++.+..+|.. .++.+|..|+.+|..+- ....+++|+.+|.. . +..+|..++++|..+-.
T Consensus 76 v~~l~~~l~d------~~~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d~--~~~vR~~aa~aL~~~~~- 135 (335)
T COG1413 76 VPLLRELLSD------EDPRVRDAAADALGELG-----------DPEAVPPLVELLENDE--NEGVRAAAARALGKLGD- 135 (335)
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcCC--cHhHHHHHHHHHHhcCc-
Confidence 4556666665 66777777777654321 13467888888884 5 78888888888876532
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHH------hhccccHHHHHHHHhcCChHHHHHH
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQF------LSHRAAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~------~~~~g~i~~Lv~ll~~~s~~~~e~a 401 (425)
..++.+++..+.+. .... ++..+... ....|..+ +.....++.+.+.+......++..|
T Consensus 136 ---------~~a~~~l~~~l~~~-~~~~---a~~~~~~~--~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 136 ---------ERALDPLLEALQDE-DSGS---AAAALDAA--LLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred ---------hhhhHHHHHHhccc-hhhh---hhhhccch--HHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHH
Confidence 23478888888764 3111 11111000 00111111 2334567888887777777889999
Q ss_pred HHHHHHHhccC
Q 041408 402 ILILSLICKFS 412 (425)
Q Consensus 402 ~~~L~~l~~~~ 412 (425)
+.+|..+..+.
T Consensus 201 a~aL~~~~~~~ 211 (335)
T COG1413 201 ASALGQLGSEN 211 (335)
T ss_pred HHHHHHhhcch
Confidence 99998888874
No 210
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.16 E-value=0.79 Score=42.39 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCchHHHHhhC-------chHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHH-HHhhccc
Q 041408 310 AQQGINAALKLMLDACPSGRNRMIMVESG-------AVFELIELELTASEKKTTELILGILFHLCSCADGRA-QFLSHRA 381 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L~~~~~n~~~iv~~G-------~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~-~~~~~~g 381 (425)
.-.-|+-|+.+|+.||..+.|...+...+ .+..|+++|....+....|.|+.+|.+||...+.-. .+..+.+
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 34578999999999999999988877643 445567777665578899999999999998655433 4555678
Q ss_pred cHHHHHHHHhc
Q 041408 382 AIAVVTKRIMQ 392 (425)
Q Consensus 382 ~i~~Lv~ll~~ 392 (425)
.|..|+..+-.
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 89999997754
No 211
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=89.78 E-value=5.8 Score=42.44 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC---chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR---NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADG 372 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~---n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~ 372 (425)
++...+..|++. ++.+|..|+..+..++..-. .-+.|...|+| |.+.|... ++++.-..+++|..++..-..
T Consensus 800 i~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 800 ICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 455667778888 99999999999998876433 33445556665 77888765 888998888888888763321
Q ss_pred HHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCCh
Q 041408 373 RAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 373 r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
-+..--..+.+|.|+-+|++...+++++++.++-.+|..++++
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc
Confidence 1111122467899999888878899999999999999999884
No 212
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=8.7 Score=39.85 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=103.7
Q ss_pred hhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHH
Q 041408 241 SAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKL 320 (425)
Q Consensus 241 ~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~a 320 (425)
++...+.+++.|..+|.. .+.++|.-+-.+|.++...=.+....+-....++.|+.-+.+. .+..+..|+.-
T Consensus 202 m~~yl~~~ldGLf~~LsD------~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~W 273 (675)
T KOG0212|consen 202 MISYLPSLLDGLFNMLSD------SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTW 273 (675)
T ss_pred HHhcchHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHH
Confidence 343334678888999986 7888887776666655432212111112235688899999888 89999999998
Q ss_pred HHHhCCCCCchHHHHhhCchHHHHHHhhccCCc-chHHHHHH---HHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 321 MLDACPSGRNRMIMVESGAVFELIELELTASEK-KTTELILG---ILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 321 L~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~-~~~e~Al~---~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
|..+.....+.-..--+|++..++..+.+. +. ..++.|.. .|..+++.......+ +-+..+.+|.+.+......
T Consensus 274 i~efV~i~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~ 351 (675)
T KOG0212|consen 274 IQEFVKIPGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREE 351 (675)
T ss_pred HHHHhcCCCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHH
Confidence 988887555444444567788888888765 43 35555443 355566655444443 4345566777766655666
Q ss_pred HHHHHHHHHHHHhccCCC
Q 041408 397 ADDRAILILSLICKFSGN 414 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~~ 414 (425)
.+-.++.-+..|-...++
T Consensus 352 tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHHHHHHHHHHHhhCcc
Confidence 666666666666555554
No 213
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=1.7 Score=46.29 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=79.6
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
+++..++.=... .++..|.-|++.+..+-.. +. ..-++.+|.+.++++ ++-+|+.|+-.+.++
T Consensus 86 ~avnt~~kD~~d------~np~iR~lAlrtm~~l~v~---~i----~ey~~~Pl~~~l~d~--~~yvRktaa~~vakl-- 148 (734)
T KOG1061|consen 86 LAVNTFLKDCED------PNPLIRALALRTMGCLRVD---KI----TEYLCDPLLKCLKDD--DPYVRKTAAVCVAKL-- 148 (734)
T ss_pred hhhhhhhccCCC------CCHHHHHHHhhceeeEeeh---HH----HHHHHHHHHHhccCC--ChhHHHHHHHHHHHh--
Confidence 455555555554 7888888887777544321 11 124688999999998 999999888877775
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
++.+......+|.++.|-+++.+. ++.++..|+++|..+....
T Consensus 149 ~~~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 149 FDIDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred hcCChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 445666677899999999999965 8899999999999998744
No 214
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.47 E-value=2 Score=44.82 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=97.4
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH--hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL--QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
++..+..+|++ ..+.+|.+|+.+...|+..-.++-. ....-| -.|..-|... +|++--..+.|++.+.
T Consensus 605 ivStiL~~L~~------k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~--ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 605 IVSTILKLLRS------KPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGED--YPEVLGSILKAICSIY 674 (975)
T ss_pred HHHHHHHHhcC------CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcc--cHHHHHHHHHHHHHHh
Confidence 46677888888 8899999999988888754332211 111112 2344445444 7887777777777766
Q ss_pred CCCCchHH-HHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHH
Q 041408 326 PSGRNRMI-MVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILI 404 (425)
Q Consensus 326 ~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~ 404 (425)
+...-+.. ==-.|.+|.|.-+|.+. +.++.+.....+..+|..+....-..+=-..---|++.|++.+...+..|...
T Consensus 675 sv~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~t 753 (975)
T COG5181 675 SVHRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATET 753 (975)
T ss_pred hhhcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Confidence 53322111 01248999999999886 88888898888888887432221111111123367777777777788888888
Q ss_pred HHHHhccC
Q 041408 405 LSLICKFS 412 (425)
Q Consensus 405 L~~l~~~~ 412 (425)
+-.+++-=
T Consensus 754 fG~Is~ai 761 (975)
T COG5181 754 FGCISRAI 761 (975)
T ss_pred hhhHHhhc
Confidence 87777643
No 215
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=1.8 Score=45.55 Aligned_cols=131 Identities=9% Similarity=0.088 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELI 344 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv 344 (425)
.=.++|..|+..+..|+..... .+. .++..|++++.+. ...+|..|..+|..++.+ ..++...++.+.
T Consensus 385 Ef~EVR~AAV~Sl~~La~ssP~---FA~--~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il 452 (823)
T KOG2259|consen 385 EFYEVRRAAVASLCSLATSSPG---FAV--RALDFLVDMFNDE--IEVVRLKAIFALTMISVH-----LAIREEQLRQIL 452 (823)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC---cHH--HHHHHHHHHhccH--HHHHHHHHHHHHHHHHHH-----heecHHHHHHHH
Confidence 4468899999999999875442 232 4689999999988 889999999999998876 334566778888
Q ss_pred HHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 345 ELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 345 ~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+.|.+. +.++.+.....|.+.--..-+.-.+ .+..|.+.|... +..+....+++..+.++.+.
T Consensus 453 ~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 453 ESLEDR-SVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 989875 7778877766666543322121111 234455544433 33344567777777777655
No 216
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.29 Score=47.71 Aligned_cols=51 Identities=29% Similarity=0.575 Sum_probs=39.7
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLT 126 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~ 126 (425)
...|.+++..|.|||-+..|..|+-..|--|+... .+=|.+++++.. .+|+
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~---g~nP~tG~kl~~-~dLI 90 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH---GTNPITGQKLDG-KDLI 90 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHc---CCCCCCCCcccc-ccce
Confidence 34688999999999999999999999999999863 344556655544 4433
No 217
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.99 E-value=10 Score=36.53 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=79.9
Q ss_pred chHHHHH-HHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFT-WVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv-~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
+.++.++ ..+++ .++.+|+.|+.+|.-+|-.+.. .+. ..++.+...+..+ +..++..|+.+|..+.
T Consensus 26 ~ll~~lI~P~v~~------~~~~vR~~al~cLGl~~Lld~~---~a~--~~l~l~~~~~~~~--~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 26 SLLDSLILPAVQS------SDPAVRELALKCLGLCCLLDKE---LAK--EHLPLFLQALQKD--DEEVKITALKALFDLL 92 (298)
T ss_pred HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhChH---HHH--HHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence 3454444 45666 7889999999999999887762 222 3578888899777 8999999999999886
Q ss_pred C-CC-CchHH-------HHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 326 P-SG-RNRMI-------MVESGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 326 ~-~~-~n~~~-------iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
. ++ +.... .-....+..+.+.|.+. +++++..|+..++.|...+
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 93 LTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence 5 22 21111 22346777888888876 7889999999999987644
No 218
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.88 E-value=0.16 Score=54.66 Aligned_cols=51 Identities=14% Similarity=0.451 Sum_probs=38.1
Q ss_pred CCCcccCcCCccCCC--C---ceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMK--D---PVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~--d---PV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+...=-|+||.-++. | |--. .|.|.|--+|+-+|+..++ +.+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-RSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-CCCCCccccccc
Confidence 344447999998874 2 3322 3778899999999999875 689999997653
No 219
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.78 E-value=1.2 Score=45.08 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc----cch--hHhhcch
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA----SSK--FLQRLKP 294 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~----~~~--~~~~~~~ 294 (425)
...|++++.-+..+.......+-. ..+...+...|.+ .....|..++|++.|++..- .+. ......+
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv-~~aa~~il~sl~d------~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFV-ADAANAILMSLED------KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHH-HHHHHHHHHHhhh------HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 455566665554443322221111 1344555555554 56778999999999997631 110 1111111
Q ss_pred hHHHHHHHHhccc-cCChHHHHHHHHHHHHhCCCCCchH----HHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 295 QIFQNIIRVLKQR-VIAQQGINAALKLMLDACPSGRNRM----IMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 295 g~i~~Lv~lL~~~-~~~~~~~~~A~~aL~~L~~~~~n~~----~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
-.+..++..-... -...+++.+|.++|.|+...-+-.. .....|.+..++.-......-.++=+|+.++.||.++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 1233333332211 1256789999999999986322111 1122333333333222222567888999999999987
Q ss_pred HhhHHHHhh-ccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccCC
Q 041408 370 ADGRAQFLS-HRAAIAVVTKRIMQV-SPAADDRAILILSLICKFSG 413 (425)
Q Consensus 370 ~e~r~~~~~-~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~~ 413 (425)
+.-.-+-.. .+...+.|..++... +.+++-+|+++|.--.+...
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 643211111 123467888877655 45788888888866555433
No 220
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=0.96 Score=47.40 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=84.6
Q ss_pred HhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 196 MAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 196 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
|+..|+--.++.-|.+... +++..|+..++.|+.+.+. .+. .++..|+++++. .-..+|..|+.
T Consensus 369 iI~sGACGA~VhGlEDEf~----EVR~AAV~Sl~~La~ssP~----FA~--~aldfLvDMfND------E~~~VRL~ai~ 432 (823)
T KOG2259|consen 369 IIPSGACGALVHGLEDEFY----EVRRAAVASLCSLATSSPG----FAV--RALDFLVDMFND------EIEVVRLKAIF 432 (823)
T ss_pred cccccccceeeeechHHHH----HHHHHHHHHHHHHHcCCCC----cHH--HHHHHHHHHhcc------HHHHHHHHHHH
Confidence 4555666667766666554 4499999999999876543 222 588999999986 67789999999
Q ss_pred HHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHH
Q 041408 276 ILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMV 335 (425)
Q Consensus 276 ~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv 335 (425)
+|..++.. +.+...-++.+.+.|.+. ++++|++.-..|.+.=..+-+...++
T Consensus 433 aL~~Is~~------l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 433 ALTMISVH------LAIREEQLRQILESLEDR--SVDVREALRELLKNARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHH------heecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999875 334445688899999988 88888887777776555555554444
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.58 E-value=11 Score=42.46 Aligned_cols=138 Identities=13% Similarity=0.010 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELI 344 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv 344 (425)
..+-+|..-...|.-||..-.- ...+.=+++.|+..|.+. +...|-+-...|.-+|..-.-+ -++.+.+|.|.
T Consensus 590 ~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~ 662 (1431)
T KOG1240|consen 590 SPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQ 662 (1431)
T ss_pred CchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeee--eHHHHHHHHHH
Confidence 4445665555666666653221 111223688999999988 8888877777666555432221 14678889999
Q ss_pred HHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 345 ELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 345 ~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
+-|.++ ++.+.+.|++.|..|+..+--++..+- ..+....=+|.+.+.-.+..++.++..++..-
T Consensus 663 Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 663 QGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HhccCc-chhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 999886 888999999999999997765554432 13444444455667788989999988876643
No 222
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.52 E-value=4.3 Score=38.37 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhc-C-cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhc-h
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEA-G-VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDK-I 248 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~-G-~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g-~ 248 (425)
.+.+.-++.-+|.++.. +..-..+... + ....+..++...........+--+++++.|+-.+......++... + .
T Consensus 77 ~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~-~~~ 154 (268)
T PF08324_consen 77 PESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHF-DSS 154 (268)
T ss_dssp CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTH-HTC
T ss_pred CccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcc-cch
Confidence 35566677777766643 3333344332 2 345566666554332222346668899999876665544445432 3 2
Q ss_pred HHHHHHHHccccccccC---CHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 249 VESFTWVLALDDESIEN---HKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~---~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
+-..+..+.. .. +...+..++.++.|++..-..... .-....++..++..+.....++++.-.++.||.+|
T Consensus 155 i~~~~~~~~~-----~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL 229 (268)
T PF08324_consen 155 ILELLSSLLS-----SLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL 229 (268)
T ss_dssp HHHHCHCCCT-----TS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----ccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 3333333332 12 678889999999999764322221 00111356667774433224889999999999999
Q ss_pred CCCCCchHHHHhh-CchHHHHHHhhccCCcchHHHH
Q 041408 325 CPSGRNRMIMVES-GAVFELIELELTASEKKTTELI 359 (425)
Q Consensus 325 ~~~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~e~A 359 (425)
...+.....+... |+-..+-..-....++.+++.+
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 230 LSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred hccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 9777666666553 4433333332222244555544
No 223
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.51 E-value=25 Score=38.92 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=115.0
Q ss_pred HHHHhcCh--hHHHHHHHHHHHHhhhch-hhhhHHhhc---------CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 165 LIKDIWKP--ELQTKTLIQLEVFAAENE-RNRKCMAEA---------GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 165 lv~~l~s~--~~~~~Al~~L~~la~~~~-~~r~~i~~~---------G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
+++.++++ +.+..|..+|..++.++- .+-.++.+. =.+-.|-.++.+.+.+.--...+.....|.+=+
T Consensus 862 iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~c 941 (1233)
T KOG1824|consen 862 IIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHC 941 (1233)
T ss_pred HHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhc
Confidence 34456665 566777788888887643 233332221 012223333433322210011333333443333
Q ss_pred CC-hHHHHhhhhchh---------chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHH
Q 041408 233 IT-SEYMKLSAFEID---------KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIR 302 (425)
Q Consensus 233 ~~-~~~~~~~v~~~~---------g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~ 302 (425)
.+ ++..+.++++-- ..+|.|-..+++ +.+..|..++.++......+......-.. ..|..++.
T Consensus 942 E~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S------~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~ 1014 (1233)
T KOG1824|consen 942 ECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRS------EASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLK 1014 (1233)
T ss_pred ccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcC------CCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHH
Confidence 22 233344444311 235666666666 77788888888887777666655544443 56889999
Q ss_pred HhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhc--------------c-------CCcchHHHHHH
Q 041408 303 VLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELT--------------A-------SEKKTTELILG 361 (425)
Q Consensus 303 lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~--------------~-------~~~~~~e~Al~ 361 (425)
+++++ +.++++.|+.++-..+.+. ..+++ +.+|-|+.+|-+ | +.-+++..|..
T Consensus 1015 ~~~dp--Dl~VrrvaLvv~nSaahNK---pslIr-DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFE 1088 (1233)
T KOG1824|consen 1015 LLRDP--DLEVRRVALVVLNSAAHNK---PSLIR-DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFE 1088 (1233)
T ss_pred HHhCC--chhHHHHHHHHHHHHHccC---HhHHH-HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHH
Confidence 99999 9999999999998877644 44443 455555555532 1 12456777888
Q ss_pred HHHHHhCCHhhHHHH
Q 041408 362 ILFHLCSCADGRAQF 376 (425)
Q Consensus 362 ~L~~L~~~~e~r~~~ 376 (425)
.+..|......+..+
T Consensus 1089 cmytLLdscld~~di 1103 (1233)
T KOG1824|consen 1089 CMYTLLDSCLDRLDI 1103 (1233)
T ss_pred HHHHHHHhhhhhccH
Confidence 888887766666544
No 224
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=88.37 E-value=0.55 Score=35.24 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=34.1
Q ss_pred cCcCCccCCCC-----ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKD-----PVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 74 ~Cpi~~~~m~d-----PV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+||-|+--| + ||.- .|+|.|---||.+|+... ..||.++++..
T Consensus 33 ~C~eCq~~~-~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk---~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGM-TPGDECPVVWGVCNHAFHDHCIYRWLDTK---GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCC-CCCCcceEEEEecchHHHHHHHHHHHhhC---CCCCCCCceeE
Confidence 677777766 3 3443 699999999999999984 58999998764
No 225
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.10 E-value=3.2 Score=36.02 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC-C-chHHHHhhCchHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG-R-NRMIMVESGAVFE 342 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~-~-n~~~iv~~G~v~~ 342 (425)
.+.++|..+.-++..+- +..+.. +.+ -+-+.+-.++..+ +.+..-.+..++..|=... + ....+...|.++.
T Consensus 17 ~~~~~r~~a~v~l~k~l--~~~~~~-~~~-~~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLL--DAAREE-FKE-KISDFIESLLDEG--EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TSCCHHHHHHHHHHHHH--HHHHHH-HHH-HHHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCHhHHHHHHHHHHHHH--HHhHHH-HHH-HHHHHHHHHHccc--cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 45667788877777763 111111 111 1233334444444 4557778888888877644 3 3344457899999
Q ss_pred HHHHhh--ccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC-hH-HHHHHHHHHHH
Q 041408 343 LIELEL--TASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS-PA-ADDRAILILSL 407 (425)
Q Consensus 343 Lv~lL~--~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s-~~-~~e~a~~~L~~ 407 (425)
++.++. +. +...+..++.+|..=|.....|..+.. .|++.|-+...... +. .+-.|+-+|..
T Consensus 91 l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 91 LLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 999998 43 777888888888887777777776654 45788888554443 33 45566655543
No 226
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.98 E-value=7.2 Score=38.37 Aligned_cols=203 Identities=8% Similarity=0.002 Sum_probs=128.8
Q ss_pred HhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH-----HHhhhhch-hchHHHHHHHHccccccccCCHHH
Q 041408 196 MAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY-----MKLSAFEI-DKIVESFTWVLALDDESIENHKEI 269 (425)
Q Consensus 196 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~-----~~~~v~~~-~g~i~~Lv~lL~~~~~~~~~~~~~ 269 (425)
+...|.++.|+..|..-.- +.+..+..+..++-..... ....+... +.++..|+.-- ++++.
T Consensus 72 i~~~dll~~Li~~L~~L~f----EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--------~~~di 139 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDF----ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--------ENPDI 139 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-H----HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--------GSTTT
T ss_pred HHHhCHHHHHHHHhhhCCC----cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--------cCccc
Confidence 4456888888887755432 2366666666665432211 11223222 34444444332 45666
Q ss_pred HHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhh---CchHHHHH
Q 041408 270 KSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVES---GAVFELIE 345 (425)
Q Consensus 270 ~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~---G~v~~Lv~ 345 (425)
--.+-..|+.++..+.-...+.. ...+..+++.+..+ +.++...|..++..+-. +..-...+... ..+...-.
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~-~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~ 216 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILY-SECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNK 216 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHT-SGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhHHHHHHHhC-cHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888877665554443 46678888999888 99999999999987544 44444444442 44556777
Q ss_pred HhhccCCcchHHHHHHHHHHHhCCHhhHH---HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 346 LELTASEKKTTELILGILFHLCSCADGRA---QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 346 lL~~~~~~~~~e~Al~~L~~L~~~~e~r~---~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+|.++ +-..+..++..|..|...+.+.. +.+.+..-+..++.+|...|...|-.|..+.--...+...
T Consensus 217 Ll~s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 217 LLESS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HCT-S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HccCC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 77775 88889999999999998888765 4556666677788877776888888888887665555333
No 227
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.26 Score=51.03 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=38.9
Q ss_pred CcccCcCCccCC----CCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCC---CCCCCCCCccHHHHHHH
Q 041408 71 EYFICPISLQIM----KDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQP---LPKDLDLTPNHTLRRLI 135 (425)
Q Consensus 71 ~~~~Cpi~~~~m----~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~---l~~~~~l~pn~~l~~~I 135 (425)
+-++|+||...| ..||.+-||||.|+.|.+.-.. .+||..+.. +....+..-|+++-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn-----~scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN-----ASCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh-----ccCCCCccccchhcChhhcchhHHHHHhh
Confidence 447899996554 4799999999999999988765 467722211 11113444566654443
No 228
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.84 E-value=10 Score=41.75 Aligned_cols=183 Identities=15% Similarity=0.114 Sum_probs=104.7
Q ss_pred HHHHHhhcccCCCcccHHHHHHHHHhcCC-ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc
Q 041408 205 MLTYIVNCCDKNQVGGLEGALSILHFFKI-TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA 283 (425)
Q Consensus 205 Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~-~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~ 283 (425)
..+.|...+.+ .++++.|+..++.+.. -.+..... -+..++.+++-|+ +.-+|--|+.++..++..
T Consensus 573 tl~rL~a~d~D--qeVkeraIscmgq~i~~fgD~l~~e---L~~~L~il~eRl~--------nEiTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 573 TLQRLKATDSD--QEVKERAISCMGQIIANFGDFLGNE---LPRTLPILLERLG--------NEITRLTAVKALTLIAMS 639 (1233)
T ss_pred HHHHHhccccc--HHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHh--------chhHHHHHHHHHHHHHhc
Confidence 33344444332 2567878777765431 11111111 1235566666554 456778888999888776
Q ss_pred ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC--CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHH
Q 041408 284 ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP--SGRNRMIMVESGAVFELIELELTASEKKTTELILG 361 (425)
Q Consensus 284 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~ 361 (425)
.-.......-..+++.|.+.++.. ....+-..+.++-.|.. .+.....+.++ ++..+-.++... +..+.+.|+.
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~--~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lises-dlhvt~~a~~ 715 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKN--QRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISES-DLHVTQLAVA 715 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHH-HHHHHHHHHH
Confidence 543332222345789999999865 45566666666666654 33444455543 333344444443 7788999999
Q ss_pred HHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHH
Q 041408 362 ILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSL 407 (425)
Q Consensus 362 ~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~ 407 (425)
.|.-+....-..... ..+..++.++.++. |+..+..|+.++..
T Consensus 716 ~L~tl~~~~ps~l~~-~~~~iL~~ii~ll~--Spllqg~al~~~l~ 758 (1233)
T KOG1824|consen 716 FLTTLAIIQPSSLLK-ISNPILDEIIRLLR--SPLLQGGALSALLL 758 (1233)
T ss_pred HHHHHHhcccHHHHH-HhhhhHHHHHHHhh--CccccchHHHHHHH
Confidence 999888744333322 22456777777665 55555556655543
No 229
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=0.24 Score=36.76 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=37.0
Q ss_pred CCCcccCcCCccCCCC-ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKD-PVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~d-PV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+|-+-.||-|.-.=.| |.++ -|.|.|-.-||.+|+........||.||+.+.
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3445567776654433 5554 68999999999999986442368999998763
No 230
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.49 E-value=32 Score=34.90 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=78.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc-ccc-------------hhHhhcchhHHHHHHHHhccccCChH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA-ASS-------------KFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~-~~~-------------~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
..++.|+.+|.+ ++....|+..+.-+... ++. ++.+. .-++|.|++-.++. +..
T Consensus 271 ~~~~~L~~lL~~--------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~--~~~ 338 (415)
T PF12460_consen 271 ELLDKLLELLSS--------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEA--DDE 338 (415)
T ss_pred HHHHHHHHHhCC--------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhc--Chh
Confidence 356777777754 55667778888777766 221 12222 24678888888776 666
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHh-hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 313 GINAALKLMLDACPSGRNRMIMVE-SGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
.+..-+.||.++..+-.....+-+ ...+|.|++-|... +..++..++.+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence 888889999998886554333333 46889999999765 7789999999999988744
No 231
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.46 E-value=14 Score=35.68 Aligned_cols=154 Identities=13% Similarity=0.127 Sum_probs=93.5
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhc------
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRL------ 292 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~------ 292 (425)
.+++.|+..|+..+.-+.. .+. ..++.+...++. ++..++..|+.++..+.........-..
T Consensus 42 ~vR~~al~cLGl~~Lld~~----~a~--~~l~l~~~~~~~------~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDKE----LAK--EHLPLFLQALQK------DDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHHHHHHHHHHHHHHhChH----HHH--HHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 4599999999988765542 222 467778888865 7889999999999998764332211111
Q ss_pred --chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc---CCcchHHHHHHHHHHHh
Q 041408 293 --KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA---SEKKTTELILGILFHLC 367 (425)
Q Consensus 293 --~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~---~~~~~~e~Al~~L~~L~ 367 (425)
...++..+.+.|.+. +++++..|+..++.|-.++.... ...++..|+-+-.+. ++..++..-..-+-..|
T Consensus 110 ~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred chHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 135778888888887 89999999999999876554322 223344444444332 12333333333344444
Q ss_pred C-CHhhHHHHhhccccHHHHHHHHh
Q 041408 368 S-CADGRAQFLSHRAAIAVVTKRIM 391 (425)
Q Consensus 368 ~-~~e~r~~~~~~~g~i~~Lv~ll~ 391 (425)
. ..+++..+ . ...+|.+-.+..
T Consensus 185 ~s~~~~Q~~l-~-~~f~~~l~~~~~ 207 (298)
T PF12719_consen 185 SSSPENQERL-A-EAFLPTLRTLSN 207 (298)
T ss_pred cCCHHHHHHH-H-HHHHHHHHHHHh
Confidence 4 34455444 3 245566666443
No 232
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.44 E-value=1.6 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.9
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHh
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQ 282 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~ 282 (425)
++|.++.+++. .++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D------~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLND------PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC------CCHHHHHHHHHHHHHHHh
Confidence 46888999987 899999999999998875
No 233
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.04 E-value=0.64 Score=44.77 Aligned_cols=62 Identities=13% Similarity=0.276 Sum_probs=47.4
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWC 139 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~ 139 (425)
...+-+-||+|.+.|.-|+.= ..||..|-.|=. .. ...||.|+.++.. +.++++.+.++...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~--~~~CP~Cr~~~g~----~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KV--SNKCPTCRLPIGN----IRCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhh----hh--cccCCcccccccc----HHHHHHHHHHHhce
Confidence 456668999999999999854 689999988833 11 3689999999864 46777777777654
No 234
>PF04641 Rtf2: Rtf2 RING-finger
Probab=86.89 E-value=0.57 Score=44.43 Aligned_cols=39 Identities=26% Similarity=0.526 Sum_probs=34.5
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcC
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQG 106 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~ 106 (425)
..-.+++|+|+++.|.+||+. .-|+-|.+..|-+|+...
T Consensus 30 ~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 30 REARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred hhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 455689999999999999976 689999999999999865
No 235
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.83 E-value=22 Score=38.75 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=112.4
Q ss_pred HHHHH-HHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHH
Q 041408 221 LEGAL-SILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQN 299 (425)
Q Consensus 221 ~~~Al-~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 299 (425)
+-.|+ .+|..++.+++ +. ...+.+++...+ .+.+.|+-.=--|...+...++.... ++..
T Consensus 36 kidAmK~iIa~M~~G~d-----ms---sLf~dViK~~~t------rd~ElKrL~ylYl~~yak~~P~~~lL-----avNt 96 (757)
T COG5096 36 KIDAMKKIIAQMSLGED-----MS---SLFPDVIKNVAT------RDVELKRLLYLYLERYAKLKPELALL-----AVNT 96 (757)
T ss_pred HHHHHHHHHHHHhcCCC-----hH---HHHHHHHHHHHh------cCHHHHHHHHHHHHHHhccCHHHHHH-----HHHH
Confidence 33343 56666766655 22 345556666665 78888888877777777776644433 3677
Q ss_pred HHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhc
Q 041408 300 IIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSH 379 (425)
Q Consensus 300 Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~ 379 (425)
+.+=|+++ ++..|..|++++..+=. ..++. .+++++.+++.+. ++.++..|+-++..+-.-... . ..+
T Consensus 97 i~kDl~d~--N~~iR~~AlR~ls~l~~-----~el~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~--l-~~~ 164 (757)
T COG5096 97 IQKDLQDP--NEEIRGFALRTLSLLRV-----KELLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD--L-YHE 164 (757)
T ss_pred HHhhccCC--CHHHHHHHHHHHHhcCh-----HHHHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh--h-hhc
Confidence 77788888 99999999998876522 22222 4789999999886 889999999999998763322 2 233
Q ss_pred cccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 380 RAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 380 ~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.|.+..+..++...++.+...|+.+|..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56676777766667889999999999888765
No 236
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=28 Score=39.30 Aligned_cols=228 Identities=10% Similarity=0.072 Sum_probs=114.5
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC-ChHHHHhhhhchhchH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI-TSEYMKLSAFEIDKIV 249 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~-~~~~~~~~v~~~~g~i 249 (425)
++..|.++-+.|..+... +.....+.+ -+..+-+.|.+...+....++..++..|..|-. .+.+....+- ..|
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I 740 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLI 740 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHH
Confidence 456777788888777644 222222111 122233333332222222235555555544322 1122333332 355
Q ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc--hhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 250 ESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK--PQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 250 ~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
+-++-.++. .+...+++|..+|..++..... ...+.+ ...|...+.++..|......+..|.. |..+...
T Consensus 741 ~EvIL~~Ke------~n~~aR~~Af~lL~~i~~i~~~-~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~i 812 (1176)
T KOG1248|consen 741 PEVILSLKE------VNVKARRNAFALLVFIGAIQSS-LDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHI 812 (1176)
T ss_pred HHHHHhccc------ccHHHHhhHHHHHHHHHHHHhh-hcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHH
Confidence 555555554 7889999999999999841000 000100 12456666666544111222222222 3333322
Q ss_pred CCchHHHHhhCchHHHHH----HhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHH
Q 041408 328 GRNRMIMVESGAVFELIE----LELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAI 402 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~----lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~ 402 (425)
-.+...+.+.+.++.+++ .|.++ .+++...|++.+..++. .++.....-. ...+|.+..++......++...-
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHH
Confidence 222333334444444444 44444 78899999999999887 5555443322 12466666755555666666666
Q ss_pred HHHHHHhccCCC
Q 041408 403 LILSLICKFSGN 414 (425)
Q Consensus 403 ~~L~~l~~~~~~ 414 (425)
.+|..|++..+.
T Consensus 891 ~LlekLirkfg~ 902 (1176)
T KOG1248|consen 891 LLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHhCH
Confidence 666666665443
No 237
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.49 E-value=6.2 Score=42.41 Aligned_cols=198 Identities=16% Similarity=0.095 Sum_probs=116.9
Q ss_pred hhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHH-hcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHH
Q 041408 192 NRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILH-FFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIK 270 (425)
Q Consensus 192 ~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~-~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 270 (425)
-|...++.|+...|+++........ .-.+..+|. .+...... ....++.+-..+.+. ...-..
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~a----kl~~~~aL~~~i~f~~~~-------~~~v~~~~~s~~~~d-----~~~~en 559 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEA----KLKWYHALAGKIDFPGER-------SYEVVKPLDSALHND-----EKGLEN 559 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHH----HHHHHHHHhhhcCCCCCc-------hhhhhhhhcchhhhh-----HHHHHH
Confidence 3455666788888887775554321 333334443 22211110 013444444444430 111112
Q ss_pred HHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC-chHHHHh-hCchHHHHHHhh
Q 041408 271 SHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR-NRMIMVE-SGAVFELIELEL 348 (425)
Q Consensus 271 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~iv~-~G~v~~Lv~lL~ 348 (425)
=++..+|.||++.+++........-.++.+-.++-.. ++..+.+++..+.||..++- ....+++ ...++.....+.
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2677888888887765554333333344444455555 88999999999999998775 4444455 455666666665
Q ss_pred ccCCcchHHHHHHHHHHHhCCHhhHHH-HhhccccHHHHHHHHhcCChHHHHHHHHHHHHH
Q 041408 349 TASEKKTTELILGILFHLCSCADGRAQ-FLSHRAAIAVVTKRIMQVSPAADDRAILILSLI 408 (425)
Q Consensus 349 ~~~~~~~~e~Al~~L~~L~~~~e~r~~-~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l 408 (425)
.. +....-.+++++..+....++... +.+...+...++..+.+.+...|.+.+....++
T Consensus 638 ~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 638 VA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred hh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 53 555556667777766665544443 444445678888888888888888887777764
No 238
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=86.48 E-value=0.041 Score=40.43 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=23.3
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+..||.|++.| +| ..|+.+|..|-.++... ..||.|+++|.
T Consensus 1 e~~CP~C~~~L-~~---~~~~~~C~~C~~~~~~~----a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL-EW---QGGHYHCEACQKDYKKE----AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE-EE---ETTEEEETTT--EEEEE----EE-TTT-SB-E
T ss_pred CCcCCCCCCcc-EE---eCCEEECccccccceec----ccCCCcccHHH
Confidence 46899999887 44 34788888886554443 58999999884
No 239
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.41 E-value=13 Score=40.69 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNI 300 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 300 (425)
...|..++...+........+.. -++...+..+.- ...+-.+..|+.++...| ......-...+++..|
T Consensus 467 l~Ra~~~i~~fs~~~~~~~~~~~---~fl~~~v~~l~~-----~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 467 LLRAFLTISKFSSSTVINPQLLQ---HFLNATVNALTM-----DVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGL 535 (1005)
T ss_pred HHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhhcc-----CCCCchhHHHHHHHHhcc---CceeccccchHHHHHH
Confidence 33555555544433222222221 245555666654 244556777777776666 2223333457888999
Q ss_pred HHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc-CCcchHHHHHHHHHHHhCCHhhHHHHhhc
Q 041408 301 IRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA-SEKKTTELILGILFHLCSCADGRAQFLSH 379 (425)
Q Consensus 301 v~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~~~e~r~~~~~~ 379 (425)
+++.... +.++--.-..+|+..+..+.......++-+.|..+.+.... .|+.+...+-.++..|+...++..-..+
T Consensus 536 ~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e- 612 (1005)
T KOG2274|consen 536 LQLASKS--SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE- 612 (1005)
T ss_pred HHHcccc--cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-
Confidence 9999877 77787888888999998877777777777888877776443 3677888888888888885555544432
Q ss_pred cccHHHHHHHHhc
Q 041408 380 RAAIAVVTKRIMQ 392 (425)
Q Consensus 380 ~g~i~~Lv~ll~~ 392 (425)
..||.+++.|..
T Consensus 613 -~~iPslisil~~ 624 (1005)
T KOG2274|consen 613 -RLIPSLISVLQL 624 (1005)
T ss_pred -HHHHHHHHHHcC
Confidence 457888886654
No 240
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=0.55 Score=45.58 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=36.8
Q ss_pred cccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
--.|=||+.--+|-|++||-|. .|..|-+..--. ...||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---hcCCCccccchHh
Confidence 4579999999999999999987 677775554322 3579999999853
No 241
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=0.24 Score=34.31 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=33.6
Q ss_pred ccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
--|-||.+--.|.|+-.|||. .|-.|=.+-|... +..||.||.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--HGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--CCcCcchhhHH
Confidence 349999988888888899985 4566655555543 47899999876
No 242
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=26 Score=37.95 Aligned_cols=93 Identities=6% Similarity=-0.013 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHH
Q 041408 310 AQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKR 389 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~l 389 (425)
++-+|+.|+.||-.|-+- .... ....+..+=.||.+. ++.+.-.|+.+...+|- +.- .++- +-...|-++
T Consensus 156 s~yVRk~AA~AIpKLYsL--d~e~--k~qL~e~I~~LLaD~-splVvgsAv~AF~evCP--erl-dLIH--knyrklC~l 225 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSL--DPEQ--KDQLEEVIKKLLADR-SPLVVGSAVMAFEEVCP--ERL-DLIH--KNYRKLCRL 225 (968)
T ss_pred cHHHHHHHHHhhHHHhcC--Chhh--HHHHHHHHHHHhcCC-CCcchhHHHHHHHHhch--hHH-HHhh--HHHHHHHhh
Confidence 556666666666554321 1111 112222233333333 56666666666666654 222 2322 235677776
Q ss_pred HhcCChHHHHHHHHHHHHHhccC
Q 041408 390 IMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 390 l~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
|.......|-..+..|..-|++.
T Consensus 226 l~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 226 LPDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred ccchhhhhHHHHHHHHHHHHHhc
Confidence 66667777777777777777653
No 243
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=85.25 E-value=35 Score=33.96 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHH-HHHHHhcCCCh
Q 041408 160 LQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGA-LSILHFFKITS 235 (425)
Q Consensus 160 ~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~A-l~~L~~L~~~~ 235 (425)
..+..++..+++ ...++.++-.|..-+ .++..|..+...|.+..+.+.+.....+. ...-+ +.++.-++.+.
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~---~~~l~~a~i~~~l~~d~ 96 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDD---ILALATAAILYVLSRDG 96 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchH---HHHHHHHHHHHHHccCC
Confidence 456667777642 366777777776655 37889999999999999999985443321 12223 34444455444
Q ss_pred HHHHhhhhchhchHHHHHHHHcccc-ccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc-------
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDD-ESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR------- 307 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~-~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~------- 307 (425)
.. ..++.+ .+.+..++.++.... ........ .....-+... . .+.+..+-.++..+
T Consensus 97 ~~-~~l~~~-~~~~~ll~~Ll~~~~~~~~~~~~~--~~~~~~lsk~--------~----~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 97 LN-MHLLLD-RDSLRLLLKLLKVDKSLDVPSDSD--SSRKKNLSKV--------Q----QKSRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred cc-hhhhhc-hhHHHHHHHHhccccccccccchh--hhhhhhhhHH--------H----HHHHHHHHHHHhccccccccC
Confidence 32 233333 267777788877200 00001110 0000000000 0 01111111122100
Q ss_pred cCChHHHHHHHHHHHHhC--------C-------CCCchHHHHhhCchHHHHHHhhc----c------C-----CcchHH
Q 041408 308 VIAQQGINAALKLMLDAC--------P-------SGRNRMIMVESGAVFELIELELT----A------S-----EKKTTE 357 (425)
Q Consensus 308 ~~~~~~~~~A~~aL~~L~--------~-------~~~n~~~iv~~G~v~~Lv~lL~~----~------~-----~~~~~e 357 (425)
+.....+.-|+.+|..++ . .+--+..+-+.|++..+++++.+ . . +....+
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 012234455666666653 1 12246777788999999999862 1 0 123557
Q ss_pred HHHHHHHHHhC-CHhhHHHHhhccc-cHHHHHHHHhcCC-h---HHHHHHHHHHHHHhccCCC
Q 041408 358 LILGILFHLCS-CADGRAQFLSHRA-AIAVVTKRIMQVS-P---AADDRAILILSLICKFSGN 414 (425)
Q Consensus 358 ~Al~~L~~L~~-~~e~r~~~~~~~g-~i~~Lv~ll~~~s-~---~~~e~a~~~L~~l~~~~~~ 414 (425)
.++.+|.+... ..+++.......+ ..+.+...+.... . .....++++|.|+..+.+.
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 78889988875 4455655544433 2333333333331 2 2245788888898888754
No 244
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.09 E-value=18 Score=37.78 Aligned_cols=153 Identities=9% Similarity=0.018 Sum_probs=86.8
Q ss_pred CcHHHHHHHHhhcccCCCc---ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQV---GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRI 276 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~---~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~ 276 (425)
+++|.|+++|...+.+... ...-.|.+.|...+. .....+.. -++..+-.-+++ .+..-++.|+.+
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~--pVl~FvEqni~~------~~w~nreaavmA 389 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMR--PVLGFVEQNIRS------ESWANREAAVMA 389 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHH--HHHHHHHHhccC------chhhhHHHHHHH
Confidence 5889999999764332111 112223333333321 11111111 122223334444 677788899999
Q ss_pred HHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHH-hhCchHHHHHHhhcc--CCc
Q 041408 277 LKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMV-ESGAVFELIELELTA--SEK 353 (425)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv-~~G~v~~Lv~lL~~~--~~~ 353 (425)
+.++..+.......-.-..++|.+..++.+. .--+++.++|++..++.+ ...++ ..|-+++.+.-..-| +.+
T Consensus 390 fGSvm~gp~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p 464 (858)
T COG5215 390 FGSVMHGPCEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCP 464 (858)
T ss_pred hhhhhcCccHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccc
Confidence 9998877654333222246789999988877 778999999999998763 22222 245555544433222 245
Q ss_pred chHHHHHHHHHHHhC
Q 041408 354 KTTELILGILFHLCS 368 (425)
Q Consensus 354 ~~~e~Al~~L~~L~~ 368 (425)
.......+...+|+.
T Consensus 465 ~~~~ncsw~~~nlv~ 479 (858)
T COG5215 465 FRSINCSWRKENLVD 479 (858)
T ss_pred hHHhhhHHHHHhHHH
Confidence 555566666777765
No 245
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.98 E-value=0.65 Score=44.50 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CCCcccCcCCccCCCC--cee--cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKD--PVT--AITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~d--PV~--~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-++++ ||+|.+.|.- --. -+||...||-|-...-..- +.+||-||..+..
T Consensus 12 deed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--ngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--NGRCPACRRKYDD 65 (480)
T ss_pred ccccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhc--cCCChHhhhhccc
Confidence 34445 9999998832 212 3689988988855444332 4689999977653
No 246
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.95 E-value=17 Score=34.27 Aligned_cols=167 Identities=18% Similarity=0.125 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchh-HHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQ-IFQN 299 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g-~i~~ 299 (425)
+-.++.++..+..+......+.....+....+..++..... +.+...+.-+++++.|+-.....+..+....+ .+..
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSS--SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTT--TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccC--CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence 67777777777766654433322211234555555543110 14666778899999999888887777665544 2333
Q ss_pred HHHHhcccc--CChHHHHHHHHHHHHhCCCC-Cch-HHHHhhCchHHHHHHhh-ccCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 300 IIRVLKQRV--IAQQGINAALKLMLDACPSG-RNR-MIMVESGAVFELIELEL-TASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 300 Lv~lL~~~~--~~~~~~~~A~~aL~~L~~~~-~n~-~~iv~~G~v~~Lv~lL~-~~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
.+..+.... .+..++-+++.+++|++..- .++ ..-.....+..+++.+. ...++++.-+++-+|.+|...+....
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 333333220 04678888899999997521 111 11112234556666433 22478899999999999998776666
Q ss_pred HHhhccccHHHHHHHH
Q 041408 375 QFLSHRAAIAVVTKRI 390 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll 390 (425)
..... .++...+...
T Consensus 238 ~~~~~-l~~~~~~~~~ 252 (268)
T PF08324_consen 238 QLAKS-LDVKSVLSKK 252 (268)
T ss_dssp HHCCC-CTHHHHHHHH
T ss_pred HHHHH-cChHHHHHHH
Confidence 66543 3344444433
No 247
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.89 E-value=0.87 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=45.8
Q ss_pred ccCcCCccCCC------CceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC----CCCCCccHHHHHHHHHH
Q 041408 73 FICPISLQIMK------DPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK----DLDLTPNHTLRRLIQAW 138 (425)
Q Consensus 73 ~~Cpi~~~~m~------dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~----~~~l~pn~~l~~~I~~~ 138 (425)
+.|-||.+.++ -|-++.||||+|..|+...+..+ ...||+||.+... ...+..|..+-..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--RILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--eeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 34666665554 46677899999999999888776 4678999988422 13466677777777664
No 248
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=33 Score=38.87 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhc-hhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFE-IDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIF 297 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i 297 (425)
.+|..+.++|..++...+. ...+.. ...+...|....++ .....+..+..+|..|-...+.-..... ...|
T Consensus 669 ~vQkK~yrlL~~l~~~~s~-~~~~~q~i~~I~n~L~ds~qs------~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I 740 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSG-EGLVEQRIDDIFNSLLDSFQS------SSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLI 740 (1176)
T ss_pred HHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHhccHHHHHHH-HHHH
Confidence 5689999999998876322 222221 11344556666665 4455667777777777655442222222 2346
Q ss_pred HHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 298 QNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 298 ~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
+-++=.++.. +...++.|..+|..++
T Consensus 741 ~EvIL~~Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 741 PEVILSLKEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHhcccc--cHHHHhhHHHHHHHHH
Confidence 6666566776 8999999999999888
No 249
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.54 E-value=1.6 Score=44.15 Aligned_cols=141 Identities=16% Similarity=0.009 Sum_probs=80.0
Q ss_pred cHHHHHHHHHhcCCC--------hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhh
Q 041408 220 GLEGALSILHFFKIT--------SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQR 291 (425)
Q Consensus 220 ~~~~Al~~L~~L~~~--------~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 291 (425)
.+++|.+.++|++.- +.....+++ -.+..+...-. +.+..+..++.+|...|.|+...-...+..+
T Consensus 449 ~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg---~ll~~~~~~A~---~~~Ad~dkV~~navraLgnllQvlq~i~~~~ 522 (728)
T KOG4535|consen 449 VRAKAAWSLGNITDALIVNMPTPDSFQERFSG---LLLLKMLRSAI---EASADKDKVKSNAVRALGNLLQFLQPIEKPT 522 (728)
T ss_pred HHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH---HHHHHHHHHHH---HhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc
Confidence 388899999887521 111112221 12333322222 1123456788899999999876533221111
Q ss_pred c---chhHHHHHH-HHhccccCChHHHHHHHHHHHHhCCCCCchHH--HHhhCchHHHHHHhhccCCcchHHHHHHHHHH
Q 041408 292 L---KPQIFQNII-RVLKQRVIAQQGINAALKLMLDACPSGRNRMI--MVESGAVFELIELELTASEKKTTELILGILFH 365 (425)
Q Consensus 292 ~---~~g~i~~Lv-~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~--iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~ 365 (425)
. ..|.+..++ ...-.+ ..+++.+|..++.||-.++.-+-. =-..-+.+.|..++.+..+=++.-.|+++|..
T Consensus 523 ~~e~~~~~~~~l~~~v~~~~--~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 523 FAEIIEESIQALISTVLTEA--AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHHHHHHHHHhcccceeccc--ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 1 012222222 222333 678999999999999987642111 11234678888888876677788888888876
Q ss_pred HhC
Q 041408 366 LCS 368 (425)
Q Consensus 366 L~~ 368 (425)
-..
T Consensus 601 p~~ 603 (728)
T KOG4535|consen 601 PGK 603 (728)
T ss_pred CCC
Confidence 544
No 250
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=0.42 Score=44.91 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=32.8
Q ss_pred CCCcccCcCCccCCCCceecCCCccc-cHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITY-DRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~-~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
...+.+|-||++.-+|=|.++|||.. |-.| |+....||+||+-+
T Consensus 297 ~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 297 LATRRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred hhHHHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 34488999999999999999999974 3333 33345799997643
No 251
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.43 E-value=8.2 Score=42.27 Aligned_cols=151 Identities=7% Similarity=0.045 Sum_probs=97.5
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
..++|.+++....... ..+..=+.+|.++-.+-+. ..+.-..+..+|.|...|+- .+..+|..+..++.
T Consensus 866 ~~ivP~l~~~~~t~~~----~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~------~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPG----SQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM------PDVIVRVSTLRTIP 934 (1030)
T ss_pred HhhHHHHHHHhccCCc----cchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC------CccchhhhHhhhhh
Confidence 4678888887752221 2245555666654433332 22222334688999999987 78889999998888
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCC-hHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIA-QQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTT 356 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 356 (425)
-+......-...-++ -++|.|+.+=++.+++ ..+|+.|+.+|..|.. .+.+.-.--+..++.+|+..|.+. ...++
T Consensus 935 ~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR 1012 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVR 1012 (1030)
T ss_pred HHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHH
Confidence 877665544433222 3677777766655222 6789999999999998 555544445567888888888764 55566
Q ss_pred HHHHHH
Q 041408 357 ELILGI 362 (425)
Q Consensus 357 e~Al~~ 362 (425)
+.|..+
T Consensus 1013 ~eAv~t 1018 (1030)
T KOG1967|consen 1013 KEAVDT 1018 (1030)
T ss_pred HHHHHH
Confidence 666543
No 252
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.23 E-value=45 Score=32.86 Aligned_cols=183 Identities=12% Similarity=0.095 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHhhhchhhhh-----HHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhc
Q 041408 173 ELQTKTLIQLEVFAAENERNRK-----CMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDK 247 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~-----~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g 247 (425)
+.+.++......+.......+. .+.. -.|-++..|-.+.... +.--.+-..|.....++.-.+.++.. .
T Consensus 91 EsrKdv~~if~~llr~~~~~~~~p~v~yl~~--~~peil~~L~~gy~~~--dial~~g~mlRec~k~e~l~~~iL~~--~ 164 (335)
T PF08569_consen 91 ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER--HRPEILDILLRGYENP--DIALNCGDMLRECIKHESLAKIILYS--E 164 (335)
T ss_dssp HHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGST--TTHHHHHHHHHHHTTSHHHHHHHHTS--G
T ss_pred cccccHHHHHHHHHhhccCCCCCchHHHHHh--CCHHHHHHHHHHhcCc--cccchHHHHHHHHHhhHHHHHHHhCc--H
Confidence 5566666555555544333332 2222 1133333443443322 22445556777777777666655553 6
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc---hhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK---PQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~---~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.+..+....+. .+-++-..|..++..+-............ ..++...-.+|.++ +.-++..++..|..|
T Consensus 165 ~f~~ff~~~~~------~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~--NYvtkrqslkLL~el 236 (335)
T PF08569_consen 165 CFWKFFKYVQL------PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS--NYVTKRQSLKLLGEL 236 (335)
T ss_dssp GGGGHHHHTTS------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC--CeEeehhhHHHHHHH
Confidence 77888888887 89999999999999987654433222221 34677888899988 999999999999999
Q ss_pred CCCCCchHHHHh----hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 325 CPSGRNRMIMVE----SGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 325 ~~~~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
-....|...|.. ..-+..+..+|.+. +..++-.|..+..-.+.++
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence 999888776554 56677788888875 7889999998888766655
No 253
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.20 E-value=50 Score=35.76 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=38.0
Q ss_pred hhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHHHhccCC
Q 041408 336 ESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSLICKFSG 413 (425)
Q Consensus 336 ~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~l~~~~~ 413 (425)
.+.+||.|++.+.+. ++ +.|..+|.-+-..-+--..+. ...+..|++-+... |.+.-+-|+|++-.-|....
T Consensus 394 aatvV~~ll~fisD~-N~---~aas~vl~FvrE~iek~p~Lr--~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 394 AATVVSLLLDFISDS-NE---AAASDVLMFVREAIEKFPNLR--ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHhccC-CH---HHHHHHHHHHHHHHHhCchHH--HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 356788888888764 33 344455554433222111221 12234455444332 56666677888777666544
No 254
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=52 Score=35.85 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHHHHh
Q 041408 310 AQQGINAALKLMLDA 324 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L 324 (425)
++-+.-.|+.|.-..
T Consensus 193 splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEV 207 (968)
T ss_pred CCcchhHHHHHHHHh
Confidence 444444444443333
No 255
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=83.61 E-value=2.6 Score=37.52 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhcchhhc-cCC-------hhHHH-----HHHHHhhhhccccCC-CCCCCcccCc
Q 041408 11 LLPFCKTNEQNLLLFLSKLLIKLLLSESRSRTH-KQK-------PQQQH-----IIILSLLFQMDDHQD-IEIPEYFICP 76 (425)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~-----~~~~~~~~~~~~~~~-~~~p~~~~Cp 76 (425)
|-+....+...+|+-+.++-..-+-.-.+.|.+ +.. ..++. .+.-..+..+..... -.-+..|.||
T Consensus 42 LA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i~d~ik~~~~~~~~klk~~l~~e~~~~~Y~Cp 121 (178)
T PRK06266 42 IAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKLPEIIKKKKMEELKKLKEQLEEEENNMFFFCP 121 (178)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEECC
Confidence 334445566667777777666555332222221 100 00111 122223333333322 2345778999
Q ss_pred CCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 77 ISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 77 i~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
-|+.-+ ||+- .... .+.||.|+.+|...+.-.--..|++.|+....
T Consensus 122 ~C~~ry----------tf~e-----A~~~---~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 122 NCHIRF----------TFDE-----AMEY---GFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCCcEE----------eHHH-----Hhhc---CCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 987443 3332 2333 49999999999652221122345565655543
No 256
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.75 E-value=61 Score=33.31 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=76.5
Q ss_pred hHHHHHHHHcccc--ccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChH------HHHHHH
Q 041408 248 IVESFTWVLALDD--ESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQ------GINAAL 318 (425)
Q Consensus 248 ~i~~Lv~lL~~~~--~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~------~~~~A~ 318 (425)
+.+.+-++|.+.. +.+ .+.-.+.-++.+|.-.|...+-... .++ ..||.|..++..+ .+++ ..+.+-
T Consensus 57 Gf~Fl~rLl~tk~~p~dc-pd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~-~d~d~e~~~~m~~d~Y 132 (698)
T KOG2611|consen 57 GFHFLDRLLRTKSGPGDC-PDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKG-IDTDYEDNLIMLEDCY 132 (698)
T ss_pred ccchHHHHhhcCCCCCCC-cHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhc-CCCchhhhHHHHHHHH
Confidence 4456667776411 011 1133567788899888887763322 122 4599999999766 3443 778899
Q ss_pred HHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHh
Q 041408 319 KLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLC 367 (425)
Q Consensus 319 ~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~ 367 (425)
.+|..++..+.+...++..|+|+.+-++-.-.+..--.+.|+.++.-+.
T Consensus 133 ~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 133 ECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999876543222233444555554443
No 257
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.41 E-value=14 Score=39.68 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
..|..+..+|.+. ++.++=.|+.+|..|+..+...+..+ ..+++++...+|..++--.+.-|..+. .+..
T Consensus 243 ~~i~~i~~lL~st--ssaV~fEaa~tlv~lS~~p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl~~l~---~~~~ 312 (948)
T KOG1058|consen 243 RYIRCIYNLLSST--SSAVIFEAAGTLVTLSNDPTALKAAA-----STYIDLLVKESDNNVKLIVLDRLSELK---ALHE 312 (948)
T ss_pred HHHHHHHHHHhcC--CchhhhhhcceEEEccCCHHHHHHHH-----HHHHHHHHhccCcchhhhhHHHHHHHh---hhhH
Confidence 3556666666655 55555555555555555444333322 334444443333333322222222222 2333
Q ss_pred HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 375 QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.+++ |-+--+++.|....-.+++.++.+-..|..+
T Consensus 313 ~il~--~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 313 KILQ--GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHH--HHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 3333 2334444544444456677777776666654
No 258
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.17 E-value=4.9 Score=30.11 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhC
Q 041408 270 KSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESG 338 (425)
Q Consensus 270 ~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G 338 (425)
.+.|.|++.++++.+.....+- +.++++.++++.... .....|-.+..+|.-++.+.+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678999999988766555433 458999999999865 367889999999999999988888877765
No 259
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.87 E-value=2.8 Score=36.55 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=50.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhcchhhccC-------C-hhHHHH-----HHHHhhhhccccC-CCCCCCcccCc
Q 041408 11 LLPFCKTNEQNLLLFLSKLLIKLLLSESRSRTHKQ-------K-PQQQHI-----IILSLLFQMDDHQ-DIEIPEYFICP 76 (425)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~-----~~~~~~~~~~~~~-~~~~p~~~~Cp 76 (425)
|-+....+...+|+.+.++.+..+-.-.|.+-... . ..++.. ++......+.... ...=+..|.||
T Consensus 34 La~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~e~~~~~Y~Cp 113 (158)
T TIGR00373 34 ISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEFETNNMFFICP 113 (158)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEECC
Confidence 44455667788888888877776654222211111 0 111111 2222233333332 33456778999
Q ss_pred CCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 77 ISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 77 i~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-|+.-+ ||+- .... .+.||.|+.+|..
T Consensus 114 ~c~~r~----------tf~e-----A~~~---~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 114 NMCVRF----------TFNE-----AMEL---NFTCPRCGAMLDY 140 (158)
T ss_pred CCCcEe----------eHHH-----HHHc---CCcCCCCCCEeee
Confidence 877433 2332 2233 3999999999865
No 260
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.82 E-value=0.55 Score=49.65 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=47.6
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAW 138 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~ 138 (425)
...+.||||.+...+|+.+.|.|.||+.|+-.-|....+...||.|+..... ....-.....++++++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSKES 86 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHHHh
Confidence 4456799999999999999999999999998866543335789999855543 2222233334455543
No 261
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=81.59 E-value=54 Score=31.92 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhhchhhhhHHhhcC-cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHH
Q 041408 175 QTKTLIQLEVFAAENERNRKCMAEAG-VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFT 253 (425)
Q Consensus 175 ~~~Al~~L~~la~~~~~~r~~i~~~G-~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv 253 (425)
+.-|++.|..+. -.++.|..+-..+ .-..++.+++..-.. .+.|-..+-++..|+.+.. ....+......+..++
T Consensus 166 rlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~--~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dli 241 (432)
T COG5231 166 RLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGV--KQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHH
Confidence 444556666654 2455565554443 334566666543221 2457778888888876543 3333333235677778
Q ss_pred HHHccccccccCCHHHHHHHHHHHHHHHhccc--chhHhhcchhHHHHHHHHhccccC-ChHHHHHH----------HHH
Q 041408 254 WVLALDDESIENHKEIKSHALRILKNIIQAAS--SKFLQRLKPQIFQNIIRVLKQRVI-AQQGINAA----------LKL 320 (425)
Q Consensus 254 ~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~~~A----------~~a 320 (425)
.+.+. .....+-+-++.++.|++.... ........ |-+.+-+++|..+.+ +.+.+..- ..-
T Consensus 242 ~iVk~-----~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 242 AIVKE-----RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 88775 2334556678899999988331 11122222 324555666654411 22222111 010
Q ss_pred H-------HHh-----CCC---------CCchHHHHh--hCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHH
Q 041408 321 M-------LDA-----CPS---------GRNRMIMVE--SGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQF 376 (425)
Q Consensus 321 L-------~~L-----~~~---------~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~ 376 (425)
| ..| +-+ .+|.+.+.+ -..+..|.++|+...+......|+.=+..+.. .+|++..+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 1 111 111 126666765 36788999999886222245566777777776 78888877
Q ss_pred hhccccHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 377 LSHRAAIAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 377 ~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
...||-..+++++.+..++++-.|++++..+-+
T Consensus 396 -~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 396 -SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred -HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 447888999998888888999999999876643
No 262
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=81.51 E-value=4 Score=42.72 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=85.6
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC---CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG---RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD 371 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e 371 (425)
-++...+.+|++. .+.+|..|+.....|+..- ..-+.+...|.| |.+-|... ++++.-..+.++..+.+.-.
T Consensus 604 ~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 604 MIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhc
Confidence 3577888899998 9999999999988887532 234445556654 66777664 78888888888887766433
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCCh
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNF 415 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~ 415 (425)
-+..---..|.+|.|+-+|.+...+++.+.+..+-.+|.+++++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey 722 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY 722 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc
Confidence 33211122467899999888777899999999999999999884
No 263
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.51 E-value=25 Score=37.73 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=78.9
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
|.+..+++-..+ .+..+|-..+.+|..+........- .+-.++...|..-|.+. .|.+|..|+.+|..+=.
T Consensus 85 ~~f~hlLRg~Es------kdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 85 GTFYHLLRGTES------KDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR--EPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHhcccC------cchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHhc
Confidence 566666666665 6778889999999888763322222 22346777888888887 88999999999999875
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.+.+- +..++..++.+++..+++++... +|.++.-++..+..+++
T Consensus 156 d~~de----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 156 DPKDE----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCIVE 200 (892)
T ss_pred CCCCC----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhHHH
Confidence 43221 23566788888987766776655 46666666655554443
No 264
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.17 E-value=19 Score=36.58 Aligned_cols=111 Identities=11% Similarity=0.079 Sum_probs=75.3
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC-hHH-------------HHhhhhchhchHHHHHHHHccccccccCC
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT-SEY-------------MKLSAFEIDKIVESFTWVLALDDESIENH 266 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~-~~~-------------~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~ 266 (425)
.+..|+.+|.+.. ....|+..+.-|..+ ++. .+++.. ..+|.|+...+. .+
T Consensus 272 ~~~~L~~lL~~~~------~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~---~~~p~L~~~~~~------~~ 336 (415)
T PF12460_consen 272 LLDKLLELLSSPE------LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT---QVLPKLLEGFKE------AD 336 (415)
T ss_pred HHHHHHHHhCChh------hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH---HHHHHHHHHHhh------cC
Confidence 3556777775532 245666666666655 321 122222 367888887775 55
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
.+.+.+-..+|.++...-+.......-..++|.|++-|.-. +...+..++.+|..+....
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHcC
Confidence 55788888899999886665444444356899999999877 8889999999999887754
No 265
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.82 E-value=70 Score=32.72 Aligned_cols=190 Identities=15% Similarity=0.139 Sum_probs=107.4
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcC-CChHHHHh-hhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFK-ITSEYMKL-SAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~-~~~~~~~~-~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
.++.+..+|..-+.......++.|+.-|..+. .+...... ..+ .++..++.+|+. ..+...++.|.++|.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~---~iL~~l~EvL~d-----~~~~~~k~laLrvL~ 355 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA---EILLLLLEVLSD-----SEDEIIKKLALRVLR 355 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH---HHHHHHHHHHcc-----chhhHHHHHHHHHHH
Confidence 34455555543222211233677777555443 33222221 222 467788888875 366778899999999
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH-HHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL-KLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTE 357 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~-~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e 357 (425)
.++.....+..--. .=+|..+++.-++. .+.+...|. .++.-+++.+.-+... .+..++.+. |...-.
T Consensus 356 ~ml~~Q~~~l~Dst-E~ai~K~Leaa~ds--~~~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~-D~~~~~ 424 (516)
T KOG2956|consen 356 EMLTNQPARLFDST-EIAICKVLEAAKDS--QDEVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTA-DEPRAV 424 (516)
T ss_pred HHHHhchHhhhchH-HHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcC-cchHHH
Confidence 99987654432111 12345555555555 444444444 4455566655433222 122233333 444445
Q ss_pred HHHHHHHHHhC--CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 358 LILGILFHLCS--CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 358 ~Al~~L~~L~~--~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.++..+..++. ..|.-..++. ...|.+++--.+.|..+++.||.+|..+-..
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 56666777765 4445555544 4678999866666889999999999877654
No 266
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=28 Score=35.72 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=99.8
Q ss_pred hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC-hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHH
Q 041408 198 EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT-SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRI 276 (425)
Q Consensus 198 ~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~-~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~ 276 (425)
+.|....++..|.....+.+...+..|++.|.+++.. .+..+.. . .-.+..++.-|-. +.+.+++-.|+.+
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~--~~~ldaii~gL~D-----~~~~~V~leam~~ 323 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-K--TTQLDAIIRGLYD-----DLNEEVQLEAMKC 323 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-H--HHHHHHHHHHHhc-----CCccHHHHHHHHH
Confidence 3566666666665444444445588899999998877 3332221 1 2456666666665 3667888889888
Q ss_pred HHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC--CCCchHHHHh--hCchHHHHHHhhccCC
Q 041408 277 LKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP--SGRNRMIMVE--SGAVFELIELELTASE 352 (425)
Q Consensus 277 L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~--~~~n~~~iv~--~G~v~~Lv~lL~~~~~ 352 (425)
|.-+...-.+......--.+.-.+..++.+. +++.|-+|..++..|+. +...++.+.+ -+...+|+-.|.+. .
T Consensus 324 Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~-~ 400 (533)
T KOG2032|consen 324 LTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP-N 400 (533)
T ss_pred HHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC-C
Confidence 8777654443332111112333555666776 88999999888888876 3345555554 12233444445432 3
Q ss_pred cchHHHHHHHHHHHhCCHhhHHHH
Q 041408 353 KKTTELILGILFHLCSCADGRAQF 376 (425)
Q Consensus 353 ~~~~e~Al~~L~~L~~~~e~r~~~ 376 (425)
+ -...|+......|.-.-.|+..
T Consensus 401 p-~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 401 P-YVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred h-HHHHHHHHHHHhcCchhHHHHH
Confidence 3 3456777777777766566554
No 267
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=80.73 E-value=80 Score=33.28 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHH-hcC--hhHHHHHHHHHHHHhhhc--hhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 159 KLQIIKLIKD-IWK--PELQTKTLIQLEVFAAEN--ERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 159 ~~~i~~lv~~-l~s--~~~~~~Al~~L~~la~~~--~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
..++.|++.. +++ .-+..++++.+..++.++ ++.-. -+|..|-.+|++..... +-.|+++|-.|+.
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~----rFsA~Riln~lam 332 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVL----RFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHH----HHHHHHHHHHHHh
Confidence 5566666655 455 356677777777766654 22211 23555666666655432 5666677666653
No 268
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.67 E-value=39 Score=31.17 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCC-CcccHHHHHHHHHhcCCChH-HHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKN-QVGGLEGALSILHFFKITSE-YMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~-~~~~~~~Al~~L~~L~~~~~-~~~~~v~~~~g~i~ 250 (425)
...+.|+..|..+++ +++.|..++++.+--.+-.+|...+... ..-.+-.++.+++.|..+++ ...+..... .++|
T Consensus 115 nRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT-eivP 192 (315)
T COG5209 115 NRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT-EIVP 192 (315)
T ss_pred hHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh-hHHH
Confidence 445778888888874 6888888888776555666664332211 11346778899998876554 223333333 7999
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc-------hhHHHHHHHHh-ccccCChHHHHHHHHHHH
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK-------PQIFQNIIRVL-KQRVIAQQGINAALKLML 322 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-------~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~ 322 (425)
.+.++... ++.-.+.-|+.++..+.-++..-.-+... ..++..++.-+ ..+ +.+..+.+.++-.
T Consensus 193 LcLrIme~------gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~--~~RLlKh~iRcYl 264 (315)
T COG5209 193 LCLRIMEL------GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG--STRLLKHAIRCYL 264 (315)
T ss_pred HHHHHHHh------hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHhe
Confidence 99999987 77777888888887776655533222110 12333344333 344 6778888888888
Q ss_pred HhCCCCCchHHHH
Q 041408 323 DACPSGRNRMIMV 335 (425)
Q Consensus 323 ~L~~~~~n~~~iv 335 (425)
.||..+..|..+-
T Consensus 265 RLsd~p~aR~lL~ 277 (315)
T COG5209 265 RLSDKPHARALLS 277 (315)
T ss_pred eecCCHhHHHHHh
Confidence 8888777665543
No 269
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.59 E-value=8.8 Score=33.58 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=77.6
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhh--CchHHHHHHhhccCCcchHHHHHHHHHHHhCC---
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVES--GAVFELIELELTASEKKTTELILGILFHLCSC--- 369 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~--- 369 (425)
..+..+..+|++. ++..|..++..+..++...+ ...+.+. --+..|+.+|+..++..+.+.++.+|..|...
T Consensus 25 ~l~~ri~~LL~s~--~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSK--SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5677788889887 88999999998888887543 2344342 35677888887754567888888888888753
Q ss_pred -HhhHHHHhhccccHHHHHHHHhcCCh--HHHHHHHHHHHHHhccCCC
Q 041408 370 -ADGRAQFLSHRAAIAVVTKRIMQVSP--AADDRAILILSLICKFSGN 414 (425)
Q Consensus 370 -~e~r~~~~~~~g~i~~Lv~ll~~~s~--~~~e~a~~~L~~l~~~~~~ 414 (425)
++-..++.. ..+|.++..+..-.. ...+.++.+|..+-.+.+.
T Consensus 102 ~p~l~Rei~t--p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 102 KPTLTREIAT--PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCchHHHHhh--ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 332333322 235666665555433 6777888888888765443
No 270
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=80.44 E-value=33 Score=37.73 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHh--hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMA--EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
..+..|++++..+++. +.+. ..+++..|.++....++ ++...-..+|...++-+++......+ .+.|
T Consensus 506 ~~ki~a~~~~~~~~~~-----~vl~~~~p~ild~L~qlas~~s~----evl~llmE~Ls~vv~~dpef~as~~s--kI~P 574 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYCKV-----KVLLSLQPMILDGLLQLASKSSD----EVLVLLMEALSSVVKLDPEFAASMES--KICP 574 (1005)
T ss_pred chhHHHHHHHHhccCc-----eeccccchHHHHHHHHHcccccH----HHHHHHHHHHHHHhccChhhhhhhhc--chhH
Confidence 4455566666555521 1111 13556666665543322 22444455666666666665554443 5667
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc--CChHHHHHHHHHHHHhCCCC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV--IAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--~~~~~~~~A~~aL~~L~~~~ 328 (425)
.++.+.... ..++.+...+-.++..++....+..-.. .-.||.|+..|.... .......-|+..|.-+..+.
T Consensus 575 ~~i~lF~k~----s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t 648 (1005)
T KOG2274|consen 575 LTINLFLKY----SEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT 648 (1005)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence 666655432 3778888888888888887444333222 357999999997651 11445555666666555432
Q ss_pred -CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 329 -RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 329 -~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
.--....-.-+.|++.+..-..+|......+-.+|..+...
T Consensus 649 p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 649 PSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred CCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 21222222347788888764444677777888888887764
No 271
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.23 E-value=14 Score=34.03 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHH-HHHHHccccccccCC-HHHHHHHHHHHHHHHhcccchh-HhhcchhHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVES-FTWVLALDDESIENH-KEIKSHALRILKNIIQAASSKF-LQRLKPQIF 297 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~-Lv~lL~~~~~~~~~~-~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i 297 (425)
..+|+.+|.-++++.+..+..+.. -+|. +...|... . .+.. .-.|-.+..++..|..+++.-. .......++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~A---hiplflypfLnts-s-~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDA---HIPLFLYPFLNTS-S-SNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeec---ccceeeHhhhhcc-c-cCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 567788888888877665544432 2222 22233210 0 0122 2356788899999988776543 334456799
Q ss_pred HHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh----h----CchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 298 QNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE----S----GAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 298 ~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~----~----G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
|.+++++..| +.-.+-.|+-.+..+-.++.+-..+.. . .++..++.-+-+.+...+...++.+-..||..
T Consensus 192 PLcLrIme~g--SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 192 PLCLRIMELG--SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 9999999998 666666666666666666654444432 2 23334444443333677888899999999999
Q ss_pred HhhHHHHh
Q 041408 370 ADGRAQFL 377 (425)
Q Consensus 370 ~e~r~~~~ 377 (425)
+..|..+.
T Consensus 270 p~aR~lL~ 277 (315)
T COG5209 270 PHARALLS 277 (315)
T ss_pred HhHHHHHh
Confidence 99988774
No 272
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=79.80 E-value=23 Score=37.01 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=94.7
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhH-HHHHHHHhccccCChHHHHHHHHHHHH-h
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQI-FQNIIRVLKQRVIAQQGINAALKLMLD-A 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~~A~~aL~~-L 324 (425)
|....+|+-... +.....+.+++.++.+.|........+.....+ +.....-++++ .+..+|-.|+.+|.+ |
T Consensus 133 ~lm~~mv~nvg~-----eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~e-t~~avRLaaL~aL~dsl 206 (858)
T COG5215 133 GLMEEMVRNVGD-----EQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNE-TTSAVRLAALKALMDSL 206 (858)
T ss_pred HHHHHHHHhccc-----cCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccC-chHHHHHHHHHHHHHHH
Confidence 445555555443 233457889999999999887764444443332 33334445555 466788899999987 4
Q ss_pred CCCCCchHHHHhhCch-HHHHHHhhccCCcchHHHHHHHHHHHhCCHh-hHHHHhhccccHHHHHHHHhcCChHHHHHHH
Q 041408 325 CPSGRNRMIMVESGAV-FELIELELTASEKKTTELILGILFHLCSCAD-GRAQFLSHRAAIAVVTKRIMQVSPAADDRAI 402 (425)
Q Consensus 325 ~~~~~n~~~iv~~G~v-~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e-~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~ 402 (425)
-....|-..--+.+++ ...++.-+. ++.+++..|.+.|..+..--- .-+-.++.+ -.....+.+++.++++.-.|+
T Consensus 207 ~fv~~nf~~E~erNy~mqvvceatq~-~d~e~q~aafgCl~kim~LyY~fm~~ymE~a-L~alt~~~mks~nd~va~qav 284 (858)
T COG5215 207 MFVQGNFCYEEERNYFMQVVCEATQG-NDEELQHAAFGCLNKIMMLYYKFMQSYMENA-LAALTGRFMKSQNDEVAIQAV 284 (858)
T ss_pred HHHHHhhcchhhhchhheeeehhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcchHHHHHHH
Confidence 3322211111111222 222333333 478899999999988876221 222334422 233444666666777777888
Q ss_pred HHHHHHhccCCChHHHHHH
Q 041408 403 LILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 403 ~~L~~l~~~~~~~~~~v~e 421 (425)
..-..+|...-+.+...++
T Consensus 285 EfWsticeEeid~~~e~~~ 303 (858)
T COG5215 285 EFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred HHHHHHHHHHhhhHHHHhh
Confidence 7776888765553333333
No 273
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=79.71 E-value=84 Score=32.91 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=100.4
Q ss_pred HHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc
Q 041408 204 AMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA 283 (425)
Q Consensus 204 ~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~ 283 (425)
.+..++.+++.. .+-.|+.-|..++.+..-...++.. .++..|..+..... .+ .+.+....++.++..+-..
T Consensus 87 ~i~e~l~~~~~~----~~~~a~k~l~sls~d~~fa~efi~~--~gl~~L~~liedg~-~~-~~~~~L~~~L~af~elmeh 158 (713)
T KOG2999|consen 87 RIMEILTEGNNI----SKMEALKELDSLSLDPTFAEEFIRC--SGLELLFSLIEDGR-VC-MSSELLSTSLRAFSELMEH 158 (713)
T ss_pred HHHHHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHhc--chHHHHHHHHHcCc-cc-hHHHHHHHHHHHHHHHHhh
Confidence 355566555432 2555888888888777666666664 67778888887511 00 1334555566666666554
Q ss_pred ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHH
Q 041408 284 ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR-NRMIMVESGAVFELIELELTASEKKTTELILGI 362 (425)
Q Consensus 284 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~ 362 (425)
.-..+... ...+|...+.+..-.-.+..+-..|+..|-++..++. -+..+.+.--+..|+..|... +..++..|.+.
T Consensus 159 gvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial 236 (713)
T KOG2999|consen 159 GVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIAL 236 (713)
T ss_pred ceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHH
Confidence 43222222 2234444444443221244567788888988888665 666777788899999999876 77777778888
Q ss_pred HHHHhC-CHhhHH
Q 041408 363 LFHLCS-CADGRA 374 (425)
Q Consensus 363 L~~L~~-~~e~r~ 374 (425)
+..|.. .++++.
T Consensus 237 ~nal~~~a~~~~R 249 (713)
T KOG2999|consen 237 LNALFRKAPDDKR 249 (713)
T ss_pred HHHHHhhCChHHH
Confidence 777764 444443
No 274
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.45 E-value=9.1 Score=43.05 Aligned_cols=145 Identities=11% Similarity=0.003 Sum_probs=98.3
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
..|.++...+.+....++..+..|.-+|+.+..-+.+ +.. .-+|.|..++.. ..++-+|.+++-.+..+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fce---s~l~llftimek-----sp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FCE---SHLPLLFTIMEK-----SPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HHH---HHHHHHHHHHhc-----CCCceeeecchheccch
Confidence 4566666664443333345677777777776543321 222 468889999985 38888999999999888
Q ss_pred HhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHH
Q 041408 281 IQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELIL 360 (425)
Q Consensus 281 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al 360 (425)
+..-.+-.- -.-+.|...|.+. ++.+|+.|..+|.+|-.++--+. .|.++-+.-.|.++ +..+...|-
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~-~~~IsdlAk 1056 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDP-NAEISDLAK 1056 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCC-cHHHHHHHH
Confidence 765443221 2457788888888 99999999999999987654332 48888888888775 777777766
Q ss_pred HHHHHHhC
Q 041408 361 GILFHLCS 368 (425)
Q Consensus 361 ~~L~~L~~ 368 (425)
.-...|+.
T Consensus 1057 ~FF~Els~ 1064 (1251)
T KOG0414|consen 1057 SFFKELSS 1064 (1251)
T ss_pred HHHHHhhh
Confidence 33333433
No 275
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.20 E-value=14 Score=39.67 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=69.0
Q ss_pred CcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhH
Q 041408 217 QVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQI 296 (425)
Q Consensus 217 ~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~ 296 (425)
++.++..|++.++.+..+ +++. -+...+...++. +++.+|..|+....++=..+. ..+...|+
T Consensus 99 np~iR~lAlrtm~~l~v~-----~i~e---y~~~Pl~~~l~d------~~~yvRktaa~~vakl~~~~~---~~~~~~gl 161 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRVD-----KITE---YLCDPLLKCLKD------DDPYVRKTAAVCVAKLFDIDP---DLVEDSGL 161 (734)
T ss_pred CHHHHHHHhhceeeEeeh-----HHHH---HHHHHHHHhccC------CChhHHHHHHHHHHHhhcCCh---hhccccch
Confidence 345577777777666432 2222 367788999987 889999888877777654433 34556799
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 297 FQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
++.|-+++.+. ++.+..+|+.+|..+....
T Consensus 162 ~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 162 VDALKDLLSDS--NPMVVANALAALSEIHESH 191 (734)
T ss_pred hHHHHHHhcCC--CchHHHHHHHHHHHHHHhC
Confidence 99999999987 9999999999999887644
No 276
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=78.51 E-value=36 Score=34.17 Aligned_cols=109 Identities=12% Similarity=0.194 Sum_probs=81.3
Q ss_pred HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhc-cc-cCChHHHH
Q 041408 238 MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLK-QR-VIAQQGIN 315 (425)
Q Consensus 238 ~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~-~~-~~~~~~~~ 315 (425)
.+.++.. ......|-.++++ -+.+ .+.+-..|+.++..+...+.....+..+.|+++.+++.+. .+ ..+.++-.
T Consensus 98 lrnl~D~-s~L~~sL~~Il~n-~~~F--G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~ 173 (379)
T PF06025_consen 98 LRNLIDS-SSLLSSLKHILEN-PEVF--GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLT 173 (379)
T ss_pred cccccch-hhHHHHHHHHHhC-cccc--chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHH
Confidence 3444541 1355566666664 1111 1455678899999999988888887778899999999998 54 23556666
Q ss_pred HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc
Q 041408 316 AALKLMLDACPSGRNRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
.--.+|..||.+.++.+.+.+.++++.+++++.+.
T Consensus 174 ~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 174 SLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 77788899999999999999999999999999764
No 277
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.33 E-value=34 Score=38.79 Aligned_cols=140 Identities=11% Similarity=0.044 Sum_probs=95.0
Q ss_pred HHHHHHHHHh-------cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 160 LQIIKLIKDI-------WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 160 ~~i~~lv~~l-------~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
+...|+|..+ ++++.+..|.-+|..+.--+.+.- .-..|.|...|.... ++.++.+++.+++-|+
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp---~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSP---SPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCC---Cceeeecchheccchh
Confidence 3445555544 345677777777765533222221 234788999886332 2356889998888887
Q ss_pred CChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChH
Q 041408 233 ITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 233 ~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
..-++ ++. -.-+.|...|.. .++.+|+.|..+|.+|...+--+. .|.++-+...|.++ +.+
T Consensus 990 v~fpn---lie---~~T~~Ly~rL~D------~~~~vRkta~lvlshLILndmiKV-----KGql~eMA~cl~D~--~~~ 1050 (1251)
T KOG0414|consen 990 VRFPN---LIE---PWTEHLYRRLRD------ESPSVRKTALLVLSHLILNDMIKV-----KGQLSEMALCLEDP--NAE 1050 (1251)
T ss_pred hhccc---ccc---hhhHHHHHHhcC------ccHHHHHHHHHHHHHHHHhhhhHh-----cccHHHHHHHhcCC--cHH
Confidence 54333 222 355677888886 899999999999999987653222 38899999999998 888
Q ss_pred HHHHHHHHHHHhCC
Q 041408 313 GINAALKLMLDACP 326 (425)
Q Consensus 313 ~~~~A~~aL~~L~~ 326 (425)
.+.-|-.....|+.
T Consensus 1051 IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSS 1064 (1251)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888766555554
No 278
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.14 E-value=2.3 Score=42.14 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCcccCcCCccCCCC---ceecCCCccccHHHHHHHHHc---CC--CCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKD---PVTAITGITYDRESIEHWLFQ---GN--NNAECPVTK 116 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~---~~--~~~~cP~~~ 116 (425)
+..-|-|.||.+-..- -+.+||+|.|||.|...|+.. ++ ..-.||.++
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3456789999966543 446799999999999999974 21 123577765
No 279
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=77.97 E-value=1.3 Score=30.97 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=21.2
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQ 117 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~ 117 (425)
+.|.||.|++-+... .+.+=+.+++..+.+ ...||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~-~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESK-NVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCC-CccCCCchh
Confidence 468899988743211 222323333333322 468999965
No 280
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=77.94 E-value=2.9 Score=33.65 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhccccCCCCCCCcccCcCCccCCCCceecC-CC-----ccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 50 QHIIILSLLFQMDDHQDIEIPEYFICPISLQIMKDPVTAI-TG-----ITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPV~~~-~g-----~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-+.++..+.|.....+-.=.++.+.||||.++=..=|... ++ .-|++.++.+-...+. .=|.+|.|+..
T Consensus 18 l~~kI~~csF~V~~~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~---~HPLSREpit~ 92 (113)
T PF06416_consen 18 LQDKISSCSFSVNSEEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA---PHPLSREPITP 92 (113)
T ss_dssp HHHHHHHC-EE--CCCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT------TTT-----T
T ss_pred HHHHHHhcccccChhhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC---CCCCccCCCCh
Confidence 3446677777766555555566689999999999888663 22 4599999999998863 44899988865
No 281
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.48 E-value=45 Score=36.15 Aligned_cols=133 Identities=11% Similarity=0.035 Sum_probs=87.7
Q ss_pred hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 246 DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 246 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
+|+...|.++... ...+.+-++..+|..-......+ ....++++.+.+++. ...-..-.++.++.||+
T Consensus 503 ~~~~~aLlrl~~~------q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d-~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 503 PGGYEALLRLGQQ------QFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHND-EKGLENFEALEALTNLA 570 (748)
T ss_pred ccHHHHHHHHHHH------hchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhh-HHHHHHHHHHHHhhccc
Confidence 3889999999886 67777777777776211111111 124567777777654 11223347889999999
Q ss_pred CC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhc-cccHHHHHHHHh
Q 041408 326 PS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSH-RAAIAVVTKRIM 391 (425)
Q Consensus 326 ~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~-~g~i~~Lv~ll~ 391 (425)
+. ...+..+++.-.++-+-+++.+. ++..+..++..+.||..++--....+.. ..+.+.....+.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 84 45777788877777666666554 7889999999999999988766655443 455555554433
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.42 E-value=1.1 Score=43.77 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=36.5
Q ss_pred CcccCcCCccCCC--Cce--ecCCCccccHHHHHHHHHcCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMK--DPV--TAITGITYDRESIEHWLFQGNNNAECPVTK 116 (425)
Q Consensus 71 ~~~~Cpi~~~~m~--dPV--~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~ 116 (425)
-++.|-.|++.+- +-- -+||.|.|--+|+++++.+++ ..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-TRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-CCCCccHH
Confidence 3578999998753 222 369999999999999998775 78999998
No 283
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.65 E-value=1.1e+02 Score=32.43 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=53.7
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
+|..++.+..+.+. .++..|+..|-.++.++.+. +. .++..|+.+|++ .++......-.+|..|
T Consensus 60 Ai~a~~DLcEDed~----~iR~~aik~lp~~ck~~~~~---v~---kvaDvL~QlL~t------dd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 60 AINAQLDLCEDEDV----QIRKQAIKGLPQLCKDNPEH---VS---KVADVLVQLLQT------DDPVELDAVKNSLMSL 123 (556)
T ss_dssp HHHHHHHHHT-SSH----HHHHHHHHHGGGG--T--T----HH---HHHHHHHHHTT---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccH----HHHHHHHHhHHHHHHhHHHH---Hh---HHHHHHHHHHhc------ccHHHHHHHHHHHHHH
Confidence 45566666655443 34778888888888765332 22 466678888987 5555555555555555
Q ss_pred HhcccchhHhhcchhHHHHHHHHhc---cccCChHHHHHHHHHHH
Q 041408 281 IQAASSKFLQRLKPQIFQNIIRVLK---QRVIAQQGINAALKLML 322 (425)
Q Consensus 281 ~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~~~~~~~~~A~~aL~ 322 (425)
...+. .+.+..|+..+. ++ +..+|+.++..|.
T Consensus 124 l~~d~--------k~tL~~lf~~i~~~~~~--de~~Re~~lkFl~ 158 (556)
T PF05918_consen 124 LKQDP--------KGTLTGLFSQIESSKSG--DEQVRERALKFLR 158 (556)
T ss_dssp HHH-H--------HHHHHHHHHHHH---HS---HHHHHHHHHHHH
T ss_pred HhcCc--------HHHHHHHHHHHHhcccC--chHHHHHHHHHHH
Confidence 44332 244555555554 55 7788999988875
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.63 E-value=2.8 Score=45.26 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=36.0
Q ss_pred CCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
+-..-.|..|.-.+.=|++- -|||.|-+.|.+ ++ ...||.|+..+
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~--~~~CP~C~~e~ 882 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DK--EDKCPKCLPEL 882 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cC--cccCCccchhh
Confidence 33446899999999999975 899999999987 33 47899997533
No 285
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.52 E-value=26 Score=30.51 Aligned_cols=146 Identities=11% Similarity=0.084 Sum_probs=81.2
Q ss_pred hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 246 DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 246 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
+..++.|..+|++ +.+.+.|.+++++|..|..-|..+....... .+.-. -.+. +...... .+.+..
T Consensus 9 P~LL~~L~~iLk~-----e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~--~~~~~~~---~l~~~~ 74 (160)
T PF11865_consen 9 PELLDILLNILKT-----EQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENS--NDESTDI---SLPMMG 74 (160)
T ss_pred HHHHHHHHHHHHh-----CCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccc--cccchhh---HHhhcc
Confidence 4678889999997 4679999999999999988887766532210 00000 0000 1111111 111111
Q ss_pred CCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH-hhHHHHhhccccHHHHHHHHhcCChHHHHHHHHH
Q 041408 326 PSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA-DGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILI 404 (425)
Q Consensus 326 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~-e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~ 404 (425)
... .-...--..++..|+..|.+.+-..-...++.++.++.... -....+.. -.+|.+++.+...++..+|.-..-
T Consensus 75 ~~~-~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~q 151 (160)
T PF11865_consen 75 ISP-SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQ 151 (160)
T ss_pred CCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHH
Confidence 111 23333344578889999987532333345566666666422 12233333 468899998876666666655544
Q ss_pred HHHH
Q 041408 405 LSLI 408 (425)
Q Consensus 405 L~~l 408 (425)
|..|
T Consensus 152 L~~l 155 (160)
T PF11865_consen 152 LADL 155 (160)
T ss_pred HHHH
Confidence 4443
No 286
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=76.47 E-value=0.72 Score=51.74 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=39.9
Q ss_pred CCCcccCcCCccCCC-CceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMK-DPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~-dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
+-..+.|++|+++|+ .--+..|||.||..|+.-|+... ..||.|+...
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~---s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS---SRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh---ccCcchhhhh
Confidence 344679999999999 55577899999999999999984 6899997543
No 287
>PF14353 CpXC: CpXC protein
Probab=76.24 E-value=1.8 Score=36.19 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=32.2
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCC-CCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN-NNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~-~~~~cP~~~~~l~ 120 (425)
+.+||-|+..+.-.|-+.=.-..+....++-+ .|. -..+||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il-~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKIL-DGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH-cCCcCEEECCCCCCcee
Confidence 46899999999888854333345555555555 333 2368999997753
No 288
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.07 E-value=66 Score=29.79 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
..+...+..|..++.++.. .. +-++..++.+... +..+.+.-+...+..+-..++-.. +.+.
T Consensus 16 ~~~~~~L~~L~~l~~~~~~----~~--~~v~~~L~~L~~~------~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNV----CV--PPVLQTLVSLVEQ------GSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred HHHHHHHHHHHHHhccCcc----ch--hHHHHHHHHHHcC------CchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 4577788888888876521 11 1345556666654 555555556666666655433111 3444
Q ss_pred HHHHHh--------ccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHh-hccCCcchHHHHHHHHHHHhC
Q 041408 299 NIIRVL--------KQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELE-LTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 299 ~Lv~lL--------~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL-~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..+ .+++...+..-..+.++..+|....+ .....++.+...| ... ++.++..++.+|..||.
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence 444441 11111233444556788888886655 3345788888888 554 77888999999999994
No 289
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.48 E-value=2.6 Score=41.21 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=35.0
Q ss_pred ccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
+.|.|+++.|-| |.+.|.|++|-...|+.|-..++ -.||.++..+..
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~--i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDG--IGDPRTKKVFRY 380 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCC--CcCCCCCccccH
Confidence 467777777754 77888888888888888876542 678888877754
No 290
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=74.19 E-value=78 Score=35.08 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh-HHHHhhhhchhchHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS-EYMKLSAFEIDKIVES 251 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~-~~~~~~v~~~~g~i~~ 251 (425)
..+.+|+..+....++.. ...+.|....+..++.....+.+..+.-.|+..|..++..- ......+. +..+.
T Consensus 268 K~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~---~v~p~ 340 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK---NVFPS 340 (815)
T ss_pred HHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH---hhcch
Confidence 677888888866654322 11223444444444443333333444666666666665321 11222222 56777
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CC-C
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SG-R 329 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~-~ 329 (425)
+..-+.. .....+..+..++-..+.. ... ...++.++..++++ +|..+......+..... .+ .
T Consensus 341 lld~lke------kk~~l~d~l~~~~d~~~ns------~~l-~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 341 LLDRLKE------KKSELRDALLKALDAILNS------TPL-SKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhh------ccHHHHHHHHHHHHHHHhc------ccH-HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcCCc
Confidence 7777765 5566666666666555441 111 24578888899999 99998886666554433 33 2
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
....---.+++|.++....+. +..+...|+.++.-+-.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 222222236788888888775 78888888888776644
No 291
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.34 E-value=40 Score=36.23 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=61.6
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
|.+..+++...+.+. .++-..+.+|..+.....+...-+.. +....+..-|.. ..+.+|.+|+.+|..
T Consensus 85 ~~f~hlLRg~Eskdk----~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~D------rep~VRiqAv~aLsr 152 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDK----KVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKD------REPNVRIQAVLALSR 152 (892)
T ss_pred HHHHHHHhcccCcch----hHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhc------cCchHHHHHHHHHHH
Confidence 445555554444433 34777777777766422222222332 555555555554 678899999999999
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLM 321 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL 321 (425)
+-..+.+-.. .++..|+.++++. .++++|++|+..|
T Consensus 153 lQ~d~~dee~-----~v~n~l~~liqnD-pS~EVRRaaLsnI 188 (892)
T KOG2025|consen 153 LQGDPKDEEC-----PVVNLLKDLIQND-PSDEVRRAALSNI 188 (892)
T ss_pred HhcCCCCCcc-----cHHHHHHHHHhcC-CcHHHHHHHHHhh
Confidence 8643322211 3456777888766 4788888776543
No 292
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.21 E-value=40 Score=39.29 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCc--hHHHHhhCchHHHHHHhh
Q 041408 271 SHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRN--RMIMVESGAVFELIELEL 348 (425)
Q Consensus 271 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n--~~~iv~~G~v~~Lv~lL~ 348 (425)
..|.++...++...+...- -.+.+..++..|... ...+|..|+++|.++...+.. ....+..|+..- +.
T Consensus 795 ~~a~li~~~la~~r~f~~s---fD~yLk~Il~~l~e~--~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~ 865 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARSFSQS---FDPYLKLILSVLGEN--AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LN 865 (1692)
T ss_pred hhHHHHHHHHHhhhHHHHh---hHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hc
Confidence 3455555555554432221 136778888888876 889999999999999986652 233344444433 33
Q ss_pred ccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChH
Q 041408 349 TASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFN 416 (425)
Q Consensus 349 ~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~ 416 (425)
+. ...++|.|+..+..-.. .++-..++.+ .+.+-++..+..++.+++.+|+.+|..-+++.
T Consensus 866 Ds-sasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 866 DS-SASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred cc-hhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChh
Confidence 33 67899999999986544 4444444432 34444666677889999999999999888863
No 293
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=73.19 E-value=2.7 Score=33.24 Aligned_cols=27 Identities=19% Similarity=0.536 Sum_probs=23.9
Q ss_pred CCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 89 ITGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 89 ~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
.|+|.|---||.+|++.+ ..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlktr---~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc---CcCCCcCcc
Confidence 689999999999999985 689999765
No 294
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.02 E-value=50 Score=31.33 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=50.6
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
..+..|+++|.++ .+-.+...+..|..+-..-+-+.. ..++.+.+++++|++. ....|+.+|.....
T Consensus 188 ~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 188 QILTFLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 4567788899888 888999999999988775443333 6677999999999764 45667777776654
No 295
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.79 E-value=45 Score=26.47 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=48.5
Q ss_pred chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHH
Q 041408 293 KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGIL 363 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L 363 (425)
..+++..|+.-+... ++...+.++..|..|..++.....+.+-|++..|-++=... ++..+...-+++
T Consensus 28 ~~~Ll~~LleWFnf~--~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP--PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 345666666666665 56688899999999999999999999999998866655332 454444444443
No 296
>PHA02862 5L protein; Provisional
Probab=71.75 E-value=3.4 Score=34.92 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=32.9
Q ss_pred cCcCCccCCCCceecCCCc-----cccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPVTAITGI-----TYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~~g~-----t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.|=||++-=.+. .-||+. -.-++|+++|+...+ ...||.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-KKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-CcCccCCCCeEEE
Confidence 477787765444 456542 255899999998654 6789999988753
No 297
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=71.49 E-value=66 Score=36.76 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=124.6
Q ss_pred HHHHHhcChhHHHHHHHHHHHHhhh-chhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC----CChHHH
Q 041408 164 KLIKDIWKPELQTKTLIQLEVFAAE-NERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK----ITSEYM 238 (425)
Q Consensus 164 ~lv~~l~s~~~~~~Al~~L~~la~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~----~~~~~~ 238 (425)
.-+..+...+.+.+|+.-|..++.- +++++- .-++|.++.++.+.... ++..|+.+|..+- .-....
T Consensus 429 s~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~----Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 429 SCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEAD----VRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHH----HHHHHHHHHHHHHhhccCCCccc
Confidence 3344456678889999999888754 223221 24689999988766543 4777777666532 122222
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc------------------ccch----------hHh
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA------------------ASSK----------FLQ 290 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~------------------~~~~----------~~~ 290 (425)
..+.-+ -++|.|-.++.. +...-+|..=+..|..|+.- +.+. ...
T Consensus 501 aniF~e--YlfP~L~~l~~d-----~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 501 ANIFPE--YLFPHLNHLLND-----SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred chhhHh--hhhhhhHhhhcc-----CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence 344444 477888888875 12222332222223222211 1111 000
Q ss_pred hcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 291 RLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 291 ~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
....++=...+.+|.+. .+-++..-+..|.-||. ....+ .+.=.++.|+..|.+. |..+...-..-+.-+|-.
T Consensus 574 ~L~~~V~~~v~sLlsd~--~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDS--PPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCc-cHHHHHHHHhhccceEEE
Confidence 11112222333444444 45666666666766664 22111 0123456777777765 544443322222222221
Q ss_pred HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHHHHhhc
Q 041408 370 ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMSR 424 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~~~ 424 (425)
-|..-+ + .+.+|.|.+-|..+-+.+-..|+.+|..|++.+--.+..|.++++
T Consensus 648 -VG~rs~-s-eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~ 699 (1431)
T KOG1240|consen 648 -VGWRSV-S-EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQ 699 (1431)
T ss_pred -EeeeeH-H-HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 122212 2 355777777666666677788999999999876654667777654
No 298
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=71.47 E-value=38 Score=37.45 Aligned_cols=147 Identities=14% Similarity=0.050 Sum_probs=89.5
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc-hhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK-PQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++|.++..... .....|.+=..+|.++...- .+..+.-+ ..++|.|++-|.-. |..+|-.++.++.-+.
T Consensus 867 ~ivP~l~~~~~t------~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 867 DIVPILVSKFET------APGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLL 937 (1030)
T ss_pred hhHHHHHHHhcc------CCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHH
Confidence 467888888874 45556677778888877633 33333222 45778888888776 7888888888877655
Q ss_pred C-CCCchHHHHhhCchHHHHHHhhccCC--cchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHH
Q 041408 326 P-SGRNRMIMVESGAVFELIELELTASE--KKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 326 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~~--~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a 401 (425)
. .+.-...-+ .-.||.++.+=.+.++ ..+++.|+..|..|.. .+-.+-.-.. ...+.+|++.|.+.-..+++.|
T Consensus 938 ~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 938 TESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHH
Confidence 4 333222222 2366777777665532 5688999999999988 4433322211 2334555554433334566666
Q ss_pred HHH
Q 041408 402 ILI 404 (425)
Q Consensus 402 ~~~ 404 (425)
+.+
T Consensus 1016 v~t 1018 (1030)
T KOG1967|consen 1016 VDT 1018 (1030)
T ss_pred HHH
Confidence 654
No 299
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=71.36 E-value=4.4 Score=34.92 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=35.2
Q ss_pred cccCcCCccCCCCceecCCCc-----cccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGI-----TYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~-----t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
+-.|=||++--. +..-||.. ..=++|+++|+..++ ...||.|+.++..
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-NKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-CCcccccCCeEEE
Confidence 446888887753 44556643 235899999999764 6789999988854
No 300
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.24 E-value=40 Score=32.56 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=62.4
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
++...+..|.+ .+++.+..++..+..|+........-.. .-+|..+++-+++. ...+.+.|..++..+-++
T Consensus 89 al~~~l~~L~s------~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl--RS~VsraA~~t~~difs~ 159 (334)
T KOG2933|consen 89 ALKQALKKLSS------DDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSS 159 (334)
T ss_pred HHHHHHHHhch------HHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHH
Confidence 33344455554 5666666666666666655542222222 24667777777777 677888888888877664
Q ss_pred CCchHHHHhhCchHHHHHHhhcc--CCcchHHHHHHHHHHHhCCH
Q 041408 328 GRNRMIMVESGAVFELIELELTA--SEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~e~Al~~L~~L~~~~ 370 (425)
-.+...-.-.+.+ ..||... ++.-+++.|..+|..+....
T Consensus 160 ln~~i~~~ld~lv---~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 160 LNNSIDQELDDLV---TQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHHHHHHHHH---HHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 3333222112222 2223222 13557788888888777643
No 301
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=69.48 E-value=1.6e+02 Score=31.23 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHH
Q 041408 220 GLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQN 299 (425)
Q Consensus 220 ~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 299 (425)
+.-++++++..++... .....+. ..+..|-.+|++ .....|=.|.++|..|+.....+..... +.
T Consensus 280 V~lE~Ar~v~~~~~~n-v~~~~~~---~~vs~L~~fL~s------~rv~~rFsA~Riln~lam~~P~kv~vcN-----~e 344 (898)
T COG5240 280 VFLEAARAVCALSEEN-VGSQFVD---QTVSSLRTFLKS------TRVVLRFSAMRILNQLAMKYPQKVSVCN-----KE 344 (898)
T ss_pred hhHHHHHHHHHHHHhc-cCHHHHH---HHHHHHHHHHhc------chHHHHHHHHHHHHHHHhhCCceeeecC-----hh
Confidence 3667777777665322 0111221 356666677776 6777888999999999987665544321 22
Q ss_pred HHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhc
Q 041408 300 IIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELT 349 (425)
Q Consensus 300 Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~ 349 (425)
+=.++.+. +......|..+|.. ..++++...+++ .||.++.=+.+
T Consensus 345 vEsLIsd~--Nr~IstyAITtLLK-TGt~e~idrLv~--~I~sfvhD~SD 389 (898)
T COG5240 345 VESLISDE--NRTISTYAITTLLK-TGTEETIDRLVN--LIPSFVHDMSD 389 (898)
T ss_pred HHHHhhcc--cccchHHHHHHHHH-cCchhhHHHHHH--HHHHHHHhhcc
Confidence 22233333 33343444444433 234556666664 45555554443
No 302
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=69.39 E-value=81 Score=34.46 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=109.9
Q ss_pred HHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH--HHHHHHcc
Q 041408 181 QLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE--SFTWVLAL 258 (425)
Q Consensus 181 ~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~--~Lv~lL~~ 258 (425)
.|...+..++++-+.+.+.|++..+..++.....+ ..+..++.++.+++...+........ ..+. .+-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~---~~~~~il~~l~n~~~~~~~~~~~~~~--~~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE---ELHRKILGLLGNLAEVLELRELLMIF--EFIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch---hHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHhh
Confidence 55577788899999999999999999999866322 44888999999988655332222111 1121 22224443
Q ss_pred ccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh-CCCCCchHHHHhh
Q 041408 259 DDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA-CPSGRNRMIMVES 337 (425)
Q Consensus 259 ~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L-~~~~~n~~~iv~~ 337 (425)
....+.--.|+.+|..+....+. .. ....++.+-..+... .........++..
T Consensus 569 -----w~~~ersY~~~siLa~ll~~~~~----~~-----------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~ 622 (699)
T KOG3665|consen 569 -----WDSIERSYNAASILALLLSDSEK----TT-----------------ECVFRNSVNELLVEAISRWLTSEIRVIND 622 (699)
T ss_pred -----cchhhHHHHHHHHHHHHHhCCCc----Cc-----------------cccchHHHHHHHHHHhhccCccceeehhh
Confidence 13335445677777777665443 11 111222233333322 2233333334444
Q ss_pred CchHH-HHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 041408 338 GAVFE-LIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQV-SPAADDRAILILSL 407 (425)
Q Consensus 338 G~v~~-Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~a~~~L~~ 407 (425)
..+.+ +..++.....+..+--|+.++.+++. .+++.+.+ ...++++.+.+.-... ....++.+..++-.
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLV-RESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhh-HhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 44455 65666554467788889999999998 45544444 5467777666632211 22344445544443
No 303
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=69.22 E-value=38 Score=35.12 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=52.0
Q ss_pred chhHHHHHHHHhccccCChHHHHHHHHHHHHhCC---CC-----------CchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 293 KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP---SG-----------RNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~---~~-----------~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
+.++|+.|+.+|... .+...+.+|+.+|..+.. +. .--..++....|..|++.+..+........
T Consensus 60 ~q~LI~~Li~~L~p~-~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn 138 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPS-YSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVN 138 (475)
T ss_pred HhCHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHH
Confidence 468999999999743 578889999988877743 11 123445667788888888774223556667
Q ss_pred HHHHHHHHhC
Q 041408 359 ILGILFHLCS 368 (425)
Q Consensus 359 Al~~L~~L~~ 368 (425)
+++++..|..
T Consensus 139 ~v~IlieLIR 148 (475)
T PF04499_consen 139 GVSILIELIR 148 (475)
T ss_pred HHHHHHHHHH
Confidence 7777777764
No 304
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.08 E-value=9.9 Score=32.59 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=16.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 041408 10 ILLPFCKTNEQNLLLFLSKLLI 31 (425)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (425)
-|-+...-+.+.+|+-++++-.
T Consensus 20 dLa~~l~i~~n~vRkiL~~L~e 41 (147)
T smart00531 20 DLAELLGIKQKQLRKILYLLYD 41 (147)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh
Confidence 3455566778888888888766
No 305
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=68.98 E-value=3.9 Score=38.80 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=33.1
Q ss_pred cccCcCCccCC----CCceecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 041408 72 YFICPISLQIM----KDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQ 117 (425)
Q Consensus 72 ~~~Cpi~~~~m----~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~ 117 (425)
++-||||.+.+ .+|..++|||+.-..|.++....+ ++||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~---y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG---YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC---CCCCcccc
Confidence 35599998654 456678999987777777777653 89999976
No 306
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=68.49 E-value=41 Score=32.73 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh--hCchHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE--SGAVFE 342 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~--~G~v~~ 342 (425)
-++-++--|+.+|.++....+.+..+-.+..+-..++.++++.-...+.+=.++-.+|-|+.+..-. ..++ ...+.-
T Consensus 161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a-qdi~K~~dli~d 239 (432)
T COG5231 161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA-QDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHH
Confidence 4455677888889888887777766555545667788888765335688889999999999876544 2222 356777
Q ss_pred HHHHhhccCCcchHHHHHHHHHHHhC-CHhhH-HHHhhccccHHHHHHHHhcC
Q 041408 343 LIELELTASEKKTTELILGILFHLCS-CADGR-AQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 343 Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r-~~~~~~~g~i~~Lv~ll~~~ 393 (425)
|+.+.......++....++++.|++. .+.+. ....- .|-+..-|+.|..+
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~er 291 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLER 291 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhc
Confidence 88888765456677888999999998 33222 22222 23355666656543
No 307
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.42 E-value=78 Score=35.09 Aligned_cols=174 Identities=14% Similarity=0.087 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNI 300 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 300 (425)
+.+|+..+........ ..+.....|.+-.+...... +.|..+...|+..|..++........-. ..+++|.|
T Consensus 270 R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~k-----DaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~l 341 (815)
T KOG1820|consen 270 RKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLK-----DANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSL 341 (815)
T ss_pred HHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhcc-----CcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchH
Confidence 6666666655443322 12222111344444444444 3777888899999999887654432211 23678899
Q ss_pred HHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh----hHHHH
Q 041408 301 IRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD----GRAQF 376 (425)
Q Consensus 301 v~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e----~r~~~ 376 (425)
++-+.+. .+.+++.+..++...+.... -....+.+...+..+ ++.........+......-. .+..+
T Consensus 342 ld~lkek--k~~l~d~l~~~~d~~~ns~~------l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 342 LDRLKEK--KSELRDALLKALDAILNSTP------LSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred HHHhhhc--cHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 9999887 77888888887776665211 122445666777765 77777776666666554322 12222
Q ss_pred hhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 377 LSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 377 ~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+|.++......+..++..|..++..+-+..+.
T Consensus 413 ---~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 413 ---KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred ---HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 23456666655445667888888888777776555
No 308
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.28 E-value=4.2 Score=43.51 Aligned_cols=41 Identities=12% Similarity=-0.075 Sum_probs=34.5
Q ss_pred CCCCCCCcccCcCCccCCCCce----ecC---CCccccHHHHHHHHHc
Q 041408 65 QDIEIPEYFICPISLQIMKDPV----TAI---TGITYDRESIEHWLFQ 105 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV----~~~---~g~t~~r~~I~~~~~~ 105 (425)
.....++.-.|++|..-+.+|| +.+ |+|.+|-.||+.|.+.
T Consensus 89 ~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 89 VDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 3456677889999999999977 345 8999999999999986
No 309
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=66.27 E-value=3.1 Score=37.46 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=36.0
Q ss_pred ccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
..|.+|+.+...-+-- .||..|-+.|+++++.+. ..||.|+--.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~---~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR---DICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhccc---CcCCchhccc
Confidence 4899999998776654 688889999999999873 7999997544
No 310
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=65.41 E-value=1.4e+02 Score=29.19 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=104.5
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHhcCC-ChHH-HHhhhhchhchHHHHHHHHccccccccCC-------HHHHHH
Q 041408 202 PRAMLTYIVNCCDKNQVGGLEGALSILHFFKI-TSEY-MKLSAFEIDKIVESFTWVLALDDESIENH-------KEIKSH 272 (425)
Q Consensus 202 i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~-~~~~-~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~-------~~~~~~ 272 (425)
+..+-+.|.+... .....++++|..+.. +... .+.+...-.--.+.+.+++...-...... +.+|..
T Consensus 58 ~k~lyr~L~~~~~----~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~ 133 (330)
T PF11707_consen 58 LKLLYRSLSSSKP----SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN 133 (330)
T ss_pred HHHHHHHhCcCcH----HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence 6667777765542 236678888888876 4433 23333322123455666664210000000 278888
Q ss_pred HHHHHHHHHhcccc--hhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC-CCC----CchHHHHhhCchHHHHH
Q 041408 273 ALRILKNIIQAASS--KFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC-PSG----RNRMIMVESGAVFELIE 345 (425)
Q Consensus 273 A~~~L~~L~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~-~~~----~n~~~iv~~G~v~~Lv~ 345 (425)
.+..+..+....+. +..+....+.+..+++-|..+ ++++....+.+|..=. ... ..|..+.+..++..|+.
T Consensus 134 fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 134 FIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 88777777654432 334455567789999999887 8899999999998533 322 35666677888999999
Q ss_pred HhhccCCc----chHHHHHHHHHHHhCCHh
Q 041408 346 LELTASEK----KTTELILGILFHLCSCAD 371 (425)
Q Consensus 346 lL~~~~~~----~~~e~Al~~L~~L~~~~e 371 (425)
+-... ++ .+.+.+-..|..+|..+.
T Consensus 212 Ly~~~-~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSRD-GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhccc-CCcccchHHHHHHHHHHHHhcCCC
Confidence 77654 55 788999999999997554
No 311
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.31 E-value=1.5e+02 Score=35.03 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=82.3
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
+.+..++.+|..+.. .++..|+.+|..+..-++.. .. .+.+-..+..-+.. .+..+|+.|+.++..
T Consensus 816 ~yLk~Il~~l~e~~i----alRtkAlKclS~ive~Dp~v---L~-~~dvq~~Vh~R~~D------ssasVREAaldLvGr 881 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI----ALRTKALKCLSMIVEADPSV---LS-RPDVQEAVHGRLND------SSASVREAALDLVGR 881 (1692)
T ss_pred HHHHHHHHHhcCchH----HHHHHHHHHHHHHHhcChHh---hc-CHHHHHHHHHhhcc------chhHHHHHHHHHHhh
Confidence 556667777765443 44999999999988665432 11 12333333333433 678899999999975
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc-CCc-chHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA-SEK-KTTE 357 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~-~~~e 357 (425)
.......-.. ....-++.-+.+. ...+|+.+.+.|+.+|....+-..+++ ..+++|... ++. .+++
T Consensus 882 fvl~~~e~~~-----qyY~~i~erIlDt--gvsVRKRvIKIlrdic~e~pdf~~i~~-----~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 882 FVLSIPELIF-----QYYDQIIERILDT--GVSVRKRVIKILRDICEETPDFSKIVD-----MCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred hhhccHHHHH-----HHHHHHHhhcCCC--chhHHHHHHHHHHHHHHhCCChhhHHH-----HHHHHHHHhccchhHHHH
Confidence 4332221110 1223333334444 678999999999999985554444432 333444322 122 3667
Q ss_pred HHHHHHHHHh
Q 041408 358 LILGILFHLC 367 (425)
Q Consensus 358 ~Al~~L~~L~ 367 (425)
.+..++..+=
T Consensus 950 Lv~etf~klW 959 (1692)
T KOG1020|consen 950 LVRETFLKLW 959 (1692)
T ss_pred HHHHHHHHHh
Confidence 7777776663
No 312
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=64.81 E-value=2.5e+02 Score=31.90 Aligned_cols=231 Identities=14% Similarity=0.081 Sum_probs=125.9
Q ss_pred HHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhh
Q 041408 164 KLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLS 241 (425)
Q Consensus 164 ~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~ 241 (425)
.|++.+++ ..++=.|++-+..++...+ ..++ ..+|...+.++.-... ......|+-+|+.|+...--....
T Consensus 345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~e~---~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 345 HLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPAED---DSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcCCc---hhHHHHHHHHHHHHHhcCCcchHH
Confidence 34444443 4666778888888877655 2222 2345555554432221 133678888999887533211111
Q ss_pred hhchhchHHHHHHHHccccc--cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH-HHHHHhccccCChHHHHHHH
Q 041408 242 AFEIDKIVESFTWVLALDDE--SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ-NIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 242 v~~~~g~i~~Lv~lL~~~~~--~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~-~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+. .++|.++.-|.-+.. -......+|..|+-+.+.++...+.......-..+.. .|+..+-+. ....|.+|.
T Consensus 418 l~---dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr--evncRRAAs 492 (1133)
T KOG1943|consen 418 LE---DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR--EVNCRRAAS 492 (1133)
T ss_pred HH---HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc--hhhHhHHHH
Confidence 21 466666666642100 0113345788888888888765543322111111222 233334555 678899999
Q ss_pred HHHHHhCCCCCch--------------------------HHHHh-hCchHHHHHHhhccC----CcchHHHHHHHHHHHh
Q 041408 319 KLMLDACPSGRNR--------------------------MIMVE-SGAVFELIELELTAS----EKKTTELILGILFHLC 367 (425)
Q Consensus 319 ~aL~~L~~~~~n~--------------------------~~iv~-~G~v~~Lv~lL~~~~----~~~~~e~Al~~L~~L~ 367 (425)
.|+.....-..|. ..+.+ .|...++++-|.... |..+++.|+.+|.+|+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 9987665421111 11111 466667777665432 5677888888888876
Q ss_pred CCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 368 SCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 368 ~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
.. ..+... +.-+|.+++..+..+...+.-+.-+...+..
T Consensus 573 ~~---~pk~~a-~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 573 LT---EPKYLA-DYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred Hh---hHHhhc-ccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 52 223323 3456777776666666666666555555443
No 313
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=64.64 E-value=1.3e+02 Score=28.55 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
-.+..+..+++.|-+ +-+|+.|.+.|... ..++-+|..|+.+|..++. ..+++
T Consensus 202 lfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~----~E~pMVRhEaAeALGaIa~-----------e~~~~ 254 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS------------PAAIPSLIKVLLDE----TEHPMVRHEAAEALGAIAD-----------EDCVE 254 (289)
T ss_pred HHHHHHHHHHhhccc------------hhhhHHHHHHHHhh----hcchHHHHHHHHHHHhhcC-----------HHHHH
Confidence 347777788876632 25777888777642 3778899999999987653 35678
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHh
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.|.+.+.+. ++-+++.+.-+|.-+
T Consensus 255 vL~e~~~D~--~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 255 VLKEYLGDE--ERVVRESCEVALDML 278 (289)
T ss_pred HHHHHcCCc--HHHHHHHHHHHHHHH
Confidence 888888887 777777776666544
No 314
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=12 Score=40.22 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=42.7
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHH
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~ 323 (425)
..+..|.+|.. +-|+.+|--|+-+|.-.|.+..++..+ .++++|+ ++. ..=+|+.|+-++.-
T Consensus 589 ~~~s~V~lLse-----s~N~HVRyGaA~ALGIaCAGtG~~eAi----~lLepl~---~D~--~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 589 QLPSTVSLLSE-----SYNPHVRYGAAMALGIACAGTGLKEAI----NLLEPLT---SDP--VDFVRQGALIALAM 650 (929)
T ss_pred hchHHHHHHhh-----hcChhhhhhHHHHHhhhhcCCCcHHHH----HHHhhhh---cCh--HHHHHHHHHHHHHH
Confidence 35777888875 478999999999999999887665543 2344443 344 44567777766653
No 315
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=64.21 E-value=8.1 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=21.9
Q ss_pred CcCCccCCCCceecC---CCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 75 CPISLQIMKDPVTAI---TGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 75 Cpi~~~~m~dPV~~~---~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
|-+|+++..-=+.=+ |+..+=..|++.||.... .+.||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-CCCCcCC
Confidence 456666666555433 777788899999998753 3479986
No 316
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=64.00 E-value=3.5 Score=39.23 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=19.3
Q ss_pred cccCcCCccCCC--Cc-eecCCCccccHH
Q 041408 72 YFICPISLQIMK--DP-VTAITGITYDRE 97 (425)
Q Consensus 72 ~~~Cpi~~~~m~--dP-V~~~~g~t~~r~ 97 (425)
.|.||+|+..|. +. ..-++||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 488999999995 33 233679999884
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=61.71 E-value=2.3e+02 Score=30.43 Aligned_cols=163 Identities=7% Similarity=-0.060 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHh---hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhch
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMA---EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKI 248 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~---~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~ 248 (425)
.+.+.-|+..||.+..++.-+-..+- ....+..++..+. .. +..+-.+++.|.|+-.+.-. ++.+...-..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~----~an~ll~vR~L~N~f~~~~g-~~~~~s~~~~ 631 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-AD----PANQLLVVRCLANLFSNPAG-RELFMSRLES 631 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cc----hhHHHHHHHHHHHhccCHHH-HHHHHHHHHH
Confidence 35567788888888876544322222 1234444444443 11 12367788999998777443 3333321122
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc--ccchhHhhcchhHHHHHHHHhccc---cCChHHHHHHHHHHHH
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQA--ASSKFLQRLKPQIFQNIIRVLKQR---VIAQQGINAALKLMLD 323 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~--~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~~A~~aL~~ 323 (425)
+...+--.++ ..+...+..-+.+..|.+.. ..+.+ .|..+.|...+... ..+.++.=.++.||.+
T Consensus 632 i~~~~~~~~s-----~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 632 ILDPVIEASS-----LSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred Hhhhhhhhhc-----ccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 2222222232 24455555445555554431 11111 23344444444322 1233455566788889
Q ss_pred hCCCCCchHHHHhhCchHHHHHHhhcc
Q 041408 324 ACPSGRNRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 324 L~~~~~n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
|+..+.+...+...--|..+++-+.+.
T Consensus 702 L~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 702 LMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred hccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 999888888888877778888887664
No 318
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.58 E-value=2.3e+02 Score=30.22 Aligned_cols=125 Identities=11% Similarity=0.009 Sum_probs=78.9
Q ss_pred cCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCC
Q 041408 231 FKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIA 310 (425)
Q Consensus 231 L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 310 (425)
.-.++++...+|. |.+..+++-+.+ .+..+|..++.+|.-+...-...- .....|++..|.+-+-+. .
T Consensus 78 ~~~~dpeg~~~V~---~~~~h~lRg~es------kdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DR--E 145 (885)
T COG5218 78 DMPDDPEGEELVA---GTFYHLLRGTES------KDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDR--E 145 (885)
T ss_pred cCCCChhhhHHHH---HHHHHHHhcccC------cchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcc--h
Confidence 3345555455554 677777777766 778899999988887765322211 122357788888888777 8
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 311 QQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
+.+|..|+.+|+.+-....|-... .+..|+.+++..++.++... +|.|+.-.+..+.
T Consensus 146 ~~VR~eAv~~L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p 202 (885)
T COG5218 146 KAVRREAVKVLCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYP 202 (885)
T ss_pred HHHHHHHHHHHHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcch
Confidence 899999999998775433332222 23467777776545555544 4556655554443
No 319
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=61.01 E-value=56 Score=27.78 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=56.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|.+-|++ +++.++..|+.+|..+..+-.... ....+.+++..|++++.+. .++.+++.++..+.+-+
T Consensus 41 ~a~ral~krl~~------~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLS------KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT-KNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcC------CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc-CCHHHHHHHHHHHHHHH
Confidence 577788888887 899999999999988887643333 2233568999999999753 47889999999987766
Q ss_pred C
Q 041408 326 P 326 (425)
Q Consensus 326 ~ 326 (425)
.
T Consensus 114 ~ 114 (142)
T cd03569 114 L 114 (142)
T ss_pred H
Confidence 4
No 320
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.27 E-value=15 Score=40.23 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCCCcccCcCCcc-CCCCce-ecCCCccccHHHHHHHHHcC
Q 041408 68 EIPEYFICPISLQ-IMKDPV-TAITGITYDRESIEHWLFQG 106 (425)
Q Consensus 68 ~~p~~~~Cpi~~~-~m~dPV-~~~~g~t~~r~~I~~~~~~~ 106 (425)
-+...=.|-+|+. ++..|- +.||||.|-+.||.++....
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 4555668999985 344565 45999999999999987653
No 321
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.11 E-value=2.8e+02 Score=30.83 Aligned_cols=190 Identities=10% Similarity=0.073 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 157 LSKLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 157 ~~~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
.+.+.....+..+.++ ..+..++..|+.+.+.. .....+...+++......|++.++- +--+|+..+..|+.-
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkdedsy----vyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSY----VYLNAIRGVVSLCEV 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCce----eeHHHHHHHHHHHHh
Confidence 3455566666666654 67888999999888643 3334455578889999998876542 255666655555421
Q ss_pred hHHHHhhhhchhchHHHHHH-HHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 235 SEYMKLSAFEIDKIVESFTW-VLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
.- ..++|.+.. ..+.. --..++.+-..-.++.++...-..-.. .-.+-++..+++.++++ +..-
T Consensus 799 -------y~--e~il~dL~e~Y~s~k---~k~~~d~~lkVGEai~k~~qa~Gel~~-~y~~~Li~tfl~gvrep--d~~~ 863 (982)
T KOG4653|consen 799 -------YP--EDILPDLSEEYLSEK---KKLQTDYRLKVGEAILKVAQALGELVF-KYKAVLINTFLSGVREP--DHEF 863 (982)
T ss_pred -------cc--hhhHHHHHHHHHhcc---cCCCccceehHHHHHHHHHHHhccHHH-HHHHHHHHHHHHhcCCc--hHHH
Confidence 11 145565555 33220 001123333333444444432221111 11123455666666655 6677
Q ss_pred HHHHHHHHHHhCCC-C-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 314 INAALKLMLDACPS-G-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 314 ~~~A~~aL~~L~~~-~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
|..++..+.+||.- + .....+.+ ++.-++.+...+++.-++..|+..+..+..
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 88999999999872 2 12224443 556666666655456677777777776655
No 322
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=59.88 E-value=13 Score=32.60 Aligned_cols=12 Identities=17% Similarity=0.586 Sum_probs=8.4
Q ss_pred cccCcCCccCCC
Q 041408 72 YFICPISLQIMK 83 (425)
Q Consensus 72 ~~~Cpi~~~~m~ 83 (425)
.+.||+|+.++.
T Consensus 134 ~~vC~vCGy~~~ 145 (166)
T COG1592 134 VWVCPVCGYTHE 145 (166)
T ss_pred EEEcCCCCCccc
Confidence 789999854443
No 323
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=59.87 E-value=67 Score=35.25 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=84.7
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHh
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CAD 371 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e 371 (425)
.+-..+...+..+ ++...+..+.++.+++.-.. .++ ...-+++-..-.... -....+....+|..++. .++
T Consensus 441 ~lW~~l~~~~~~~--~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 441 NLWKALLKSLDSD--NPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHHHHhhcCC--ChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHH
Confidence 3455666666665 77888888888888887432 111 111112212212111 23456677888899988 777
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHHHHhhc
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEMSR 424 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~~~ 424 (425)
.-..+..+.....+++.++.++.....+.|..+|......++- .+.++++.+
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R-~e~i~~ll~ 566 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGR-LEAIQALLQ 566 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcH-HHHHHHHHH
Confidence 8888888888899999999999889999999999999986666 677777653
No 324
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.80 E-value=4.5 Score=40.94 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=51.7
Q ss_pred cCCCCCCCcccCcCC-ccCCCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q 041408 64 HQDIEIPEYFICPIS-LQIMKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAW 138 (425)
Q Consensus 64 ~~~~~~p~~~~Cpi~-~~~m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~ 138 (425)
..-.+.++.+.||+| ...|.|-+++ .|+.+||..||...+...+ ...|+.|... ...+.++..++..+..-
T Consensus 211 ~~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~-~~~c~~~~~~---~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 211 RTVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKS-MCVCGASNVL---ADDLLPPKTLRDTINRI 284 (448)
T ss_pred HHhccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccccc-CCcchhhccc---ccccCCchhhHHHHHHH
Confidence 345578999999999 8999999988 5899999999999998643 3345554332 24566777776665443
No 325
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=59.64 E-value=70 Score=35.40 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=78.8
Q ss_pred chhHHHHHHHHhccc---cCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhc---cCC----cchHHHHHHH
Q 041408 293 KPQIFQNIIRVLKQR---VIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELT---ASE----KKTTELILGI 362 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~---~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~---~~~----~~~~e~Al~~ 362 (425)
+.|++..|+++|..- +.....-...+..|...|....||..+++.|+++.|++.|.. ... ..+.|..+.+
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 347788888888643 113345556677777778888999999999999999999952 112 5778888888
Q ss_pred HHHHhCCHhhHHHH-----hhc-------cccHHHHHHHHhcC----ChHHHHHHHHHHHHHhccCCC
Q 041408 363 LFHLCSCADGRAQF-----LSH-------RAAIAVVTKRIMQV----SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 363 L~~L~~~~e~r~~~-----~~~-------~g~i~~Lv~ll~~~----s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+..|.........- ... .--+..|++.+... ++...+..+++|-.|+.+..+
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e 262 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE 262 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH
Confidence 88887633311110 010 11145555544432 345667778888888877655
No 326
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=59.46 E-value=5.7 Score=36.45 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=34.1
Q ss_pred cccCcCCc-cCCCCcee----cC-CCccccHHHHHHHHHcCCCCCCCC--CCCCC
Q 041408 72 YFICPISL-QIMKDPVT----AI-TGITYDRESIEHWLFQGNNNAECP--VTKQP 118 (425)
Q Consensus 72 ~~~Cpi~~-~~m~dPV~----~~-~g~t~~r~~I~~~~~~~~~~~~cP--~~~~~ 118 (425)
+-.||+|+ +.+-.|-+ -| |=|..|-+|+.+.|..| ...|| -|++-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G--pAqCP~~gC~kI 62 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG--PAQCPYKGCGKI 62 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC--CCCCCCccHHHH
Confidence 45799998 55556642 25 88999999999999987 57899 56533
No 327
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.32 E-value=9 Score=26.78 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=22.7
Q ss_pred ccCcCCccCC--CCceec--CCCccccHHH
Q 041408 73 FICPISLQIM--KDPVTA--ITGITYDRES 98 (425)
Q Consensus 73 ~~Cpi~~~~m--~dPV~~--~~g~t~~r~~ 98 (425)
-.||+|++.| .|.++. .||-.|=|.|
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 4799999999 788877 4999999988
No 328
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=59.02 E-value=1.2e+02 Score=26.27 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=42.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.++..|...|+. +.-..-...++.++.++......+.. .--..++|.+++.++.. +...++.-+.-|..|
T Consensus 86 vvi~~L~~iL~D-----~sLs~~h~~vv~ai~~If~~l~~~cv-~~L~~viP~~l~~i~~~--~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 86 VVINALMRILRD-----PSLSSHHTAVVQAIMYIFKSLGLKCV-PYLPQVIPIFLRVIRTC--PDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHhcCcCch-hHHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 356678888875 12223344566666666544333222 22246899999999977 667777766666554
No 329
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=58.30 E-value=12 Score=42.35 Aligned_cols=40 Identities=28% Similarity=0.706 Sum_probs=27.4
Q ss_pred CCCCcccCcCCc--cCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISL--QIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~Cpi~~--~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+|.++.||=|+ +.+.|+ ...+| |+- ..+.||.|+.|+..
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fDL-----------pdK~CPkCg~pl~k 951 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FDL-----------PDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CCC-----------CCCCCCcCCCcccc
Confidence 689999999887 455555 22233 332 14789999999865
No 330
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.10 E-value=10 Score=30.38 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=21.7
Q ss_pred CCCCcccCcCCccCC----CCceecC-CCccccHHHHH
Q 041408 68 EIPEYFICPISLQIM----KDPVTAI-TGITYDRESIE 100 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m----~dPV~~~-~g~t~~r~~I~ 100 (425)
++-..-+||-|+.-| ++|++.| ||.+|-|+..+
T Consensus 5 eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe 42 (129)
T COG4530 5 ELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFE 42 (129)
T ss_pred cccccccCccccchhhccCCCccccCcccccchHHHHH
Confidence 344456788887554 6787776 78887665543
No 331
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=57.93 E-value=43 Score=35.94 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=73.5
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh------hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 297 FQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE------SGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~------~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
...++.+|.+. +.-.|-.-+.+..|+...-.....+++ +..|..|++-|.+. .+-+.-.|+.++..++.-+
T Consensus 301 ~~~~~~LLdse--s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 301 YEHFDELLDSE--SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHHhccc--chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCc
Confidence 56788999887 788888888888888764333334544 23444455555554 7888899999999998733
Q ss_pred h----hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 371 D----GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 371 e----~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
. -|.++. ..+++-+...|..++.+|++++..|-...
T Consensus 378 sk~~~~r~ev~------~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 378 SKTVGRRHEVI------RLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred ccccchHHHHH------HHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 2 233333 34455566778899999999998875543
No 332
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=57.25 E-value=88 Score=26.10 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=55.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccc-cCChHHHHHHHHHHHHh
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQR-VIAQQGINAALKLMLDA 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~aL~~L 324 (425)
.++..|-+-|++ +++.++..|+.+|..+..+-..... ...+..++..|++++... ..++.+++.++..|.+.
T Consensus 37 ~a~raL~krl~~------~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 37 EAARAIRKKIKY------GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 567778888887 8999999999999888876554332 222336777799999763 24788999999998877
Q ss_pred CC
Q 041408 325 CP 326 (425)
Q Consensus 325 ~~ 326 (425)
+.
T Consensus 111 ~~ 112 (133)
T cd03561 111 SE 112 (133)
T ss_pred HH
Confidence 65
No 333
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=56.43 E-value=6.3 Score=26.64 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=24.3
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
|.|--|....+. .+-.+.|..|..|+..-+..+ ..||.|+.+++
T Consensus 3 ~nCKsCWf~~k~-Li~C~dHYLCl~CLt~ml~~s---~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFANKG-LIKCSDHYLCLNCLTLMLSRS---DRCPICGKPLP 46 (50)
T ss_dssp ----SS-S--SS-EEE-SS-EEEHHHHHHT-SSS---SEETTTTEE--
T ss_pred ccChhhhhcCCC-eeeecchhHHHHHHHHHhccc---cCCCcccCcCc
Confidence 345445444322 234567999999999888764 79999999984
No 334
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.16 E-value=4 Score=37.60 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCce-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 041408 83 KDPV-TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWC 139 (425)
Q Consensus 83 ~dPV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~ 139 (425)
.||- ++.|+|.||-.|...-. ...||.|++++.. ..+..| |-.-|..+.
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~-----~~~C~lCkk~ir~-i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS-----PDVCPLCKKSIRI-IQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccCC-----ccccccccceeee-eecccc--cchhHHHHc
Confidence 4555 56899999999853221 2389999999754 555444 444444433
No 335
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=55.87 E-value=83 Score=26.32 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|-+-|++ +++.++..|+.+|..+..+-.... ....+.+++..|++++......+.+++.++..+.+.+
T Consensus 37 ~a~r~l~krl~~------~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNN------KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 467778888887 899999999999998887644433 2233557899999999876222338888888887665
Q ss_pred C
Q 041408 326 P 326 (425)
Q Consensus 326 ~ 326 (425)
.
T Consensus 111 ~ 111 (133)
T smart00288 111 D 111 (133)
T ss_pred H
Confidence 4
No 336
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=54.49 E-value=50 Score=28.18 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=59.1
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|.+-|.++ ++.++-.|+..|-.+..+.. -...+...+.+..|+.++....+..+++.++..+...+.
T Consensus 37 ~a~ral~KRl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHK--DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4577777888887 89999999999999987543 566777889999999999874478899999999888765
No 337
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=54.47 E-value=10 Score=37.54 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCCccccH-----HHHHHHHHcCC----------CCCCCCCCCCCCCC
Q 041408 89 ITGITYDR-----ESIEHWLFQGN----------NNAECPVTKQPLPK 121 (425)
Q Consensus 89 ~~g~t~~r-----~~I~~~~~~~~----------~~~~cP~~~~~l~~ 121 (425)
+|+.-||| .|+-+||.... |.-.||.||..++-
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 56666755 79999997533 34689999999875
No 338
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=54.45 E-value=47 Score=35.49 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=62.1
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
...++.+...|.......+...+..++.+|+|+.. +..++.+...+... ...+...|..|+++|.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------------~~~i~~l~~~i~~~---~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------------PESIPVLLPYIEGK---EEVPHFIRVAAIQALR 549 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------------GGGHHHHHTTSTTS---S-S-HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------------chhhHHHHhHhhhc---cccchHHHHHHHHHHH
Confidence 35677777777633222212235666788887753 14666676666641 0235678889999998
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~ 323 (425)
.++.... .-+.+.|..++.+...++++|-+|..+|..
T Consensus 550 ~~~~~~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 550 RLAKHCP--------EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp TGGGT-H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHhhcCc--------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 7744322 134677888887765578899999888776
No 339
>PLN02189 cellulose synthase
Probab=54.29 E-value=9.9 Score=42.54 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=33.8
Q ss_pred ccCcCCccC-----CCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQI-----MKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~-----m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|+||++- .-+|-+. .||--.||.|.+-=.+++ +..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg--~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREG--TQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC--CccCcccCCchh
Confidence 389999975 3456554 488889999985444444 789999998775
No 340
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=53.65 E-value=52 Score=27.98 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=58.5
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|.+-|..+ ++..+-.|+..|-.+..+. .-...+...+.+..|+.++....+..+++.++..+..-+.
T Consensus 41 ~a~ral~krl~~~--n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSK--NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4677788888888 9999999999998888763 3566677889999999999765578899999998887765
No 341
>PLN03086 PRLI-interacting factor K; Provisional
Probab=53.55 E-value=16 Score=38.52 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCCCCCcccCcCCccCCC------------CceecCCCccccHHHHHHHHHcC-C-CCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMK------------DPVTAITGITYDRESIEHWLFQG-N-NNAECPVTKQPLP 120 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~------------dPV~~~~g~t~~r~~I~~~~~~~-~-~~~~cP~~~~~l~ 120 (425)
..+++.++.||.|+..|. .|+.-+||..+.|..+.+|.... . ....||.|+..+.
T Consensus 447 r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 447 VEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 346677788888877663 34444578888888887776521 1 2356888877664
No 342
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=53.46 E-value=47 Score=26.01 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=50.3
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 297 FQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
+...+..|.++ .+.+|..++..|..|....+ ....--.+++..+...|.+. |+-+--.|...|..|+.
T Consensus 5 ~~~al~~L~dp--~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDP--LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCC--CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHH
Confidence 34456667777 78899999999999987655 22222346677777777775 88888999999999887
No 343
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=52.86 E-value=10 Score=36.70 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=37.2
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
-+++-.|-||-.-..=--.+||||..|..|=-+--.--. .+.||+|+..-
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCcccccc
Confidence 356689999999887777899999999988544322111 36899999764
No 344
>PLN02195 cellulose synthase A
Probab=52.77 E-value=12 Score=41.58 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred cCcCCcc-----CCCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQ-----IMKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 74 ~Cpi~~~-----~m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
.|.||++ .+-+|-+. .||.-.||.|.+-=-+++ +..||.|+.++.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg--~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEG--RKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcC--CccCCccCCccc
Confidence 5899987 45567665 588899999984333333 789999998876
No 345
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=52.62 E-value=6.8 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.958 Sum_probs=11.7
Q ss_pred CCCCcccCcCCcc
Q 041408 68 EIPEYFICPISLQ 80 (425)
Q Consensus 68 ~~p~~~~Cpi~~~ 80 (425)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999975
No 346
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=52.50 E-value=16 Score=32.36 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
-+..|.||.|+.-+ +|+.+ +..+ ++||.|+..+...+.-.....+.+.++....
T Consensus 110 ~~~~y~C~~~~~r~----------sfdeA-----~~~~---F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 110 ENNYYVCPNCHVKY----------SFDEA-----MELG---FTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred cCCceeCCCCCCcc----------cHHHH-----HHhC---CCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 45568898877544 45543 3443 8999999998652333333445555555443
No 347
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.36 E-value=99 Score=26.36 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=57.6
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|.+-|++ +++.++..|+.+|..+..+-..... .+.+..++..|++++... .++.+++..+..|...+
T Consensus 37 ~a~ral~KRl~~------~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNH------KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH
Confidence 467778888887 8899999999999998877665443 233568999999999884 38899999999987766
Q ss_pred C
Q 041408 326 P 326 (425)
Q Consensus 326 ~ 326 (425)
.
T Consensus 110 ~ 110 (144)
T cd03568 110 D 110 (144)
T ss_pred H
Confidence 4
No 348
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.18 E-value=2e+02 Score=28.77 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHHhCCCCC-------------chH
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLDACPSGR-------------NRM 332 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L~~~~~-------------n~~ 332 (425)
...|..|+..|..|+..-.....-.. .+.+..++.-. .++..+.+.+..|+..+..|+.... +..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 34567888999999875332221111 12233222211 1333477889999999999986432 234
Q ss_pred HHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHH
Q 041408 333 IMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILIL 405 (425)
Q Consensus 333 ~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L 405 (425)
.+...-++|-|- -.....+-++..|+..+...... -.+..+. +.+|.++..|.+.+..+.-+|+.++
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 444455555544 11112466777777777766552 2334442 3789999988887877777776653
No 349
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.83 E-value=1.2e+02 Score=33.94 Aligned_cols=128 Identities=8% Similarity=-0.054 Sum_probs=74.8
Q ss_pred cCcHHHHHHHHhhcccCC----CcccHHHHHHHHHhcCCC---hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKN----QVGGLEGALSILHFFKIT---SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKS 271 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~----~~~~~~~Al~~L~~L~~~---~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~ 271 (425)
.|.++.+++.|.+..... +..-.+.|+.+++.|+.- .+-.+..+.. =.++.+.-.+++ .-.-.|.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~--flv~hVfP~f~s------~~g~Lra 480 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY--FLVNHVFPEFQS------PYGYLRA 480 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH--HHHHHhhHhhcC------chhHHHH
Confidence 478888888887432211 123467788888887610 0111122221 123344445565 5556889
Q ss_pred HHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhh
Q 041408 272 HALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVES 337 (425)
Q Consensus 272 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~ 337 (425)
.|+|++...+..+=...... ..++..-.+.|.+. ..-.++-.|+-||..+-++......-+++
T Consensus 481 rac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 481 RACWVLSQFSSIDFKDPNNL--SEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 99999999995432111111 13566666777632 26788999999999888866544333443
No 350
>PHA03096 p28-like protein; Provisional
Probab=51.13 E-value=9.8 Score=36.47 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=30.3
Q ss_pred ccCcCCccCCCCc-e------ec-CCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDP-V------TA-ITGITYDRESIEHWLFQGNNNAECPVTKQ 117 (425)
Q Consensus 73 ~~Cpi~~~~m~dP-V------~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~ 117 (425)
-.|-||++.-.+- + ++ .|.|.||-.||..|-.......+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5699998654321 1 33 69999999999999976432345666643
No 351
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.28 E-value=1.9e+02 Score=32.40 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=81.6
Q ss_pred chHHHHHHHHcccccc--ccCCHHHHHHHHHHHHHHHhcccchhHh--hcchhHHHHHHHHhccccCChHHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDES--IENHKEIKSHALRILKNIIQAASSKFLQ--RLKPQIFQNIIRVLKQRVIAQQGINAALKLML 322 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~--~~~~~~~~~~A~~~L~~L~~~~~~~~~~--~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~ 322 (425)
|+++.++..|++..+. -..++..+.-|..++.+|++.=..+... ..+.=+++.++-.+++. ..-.|..|++++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~--~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP--YGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc--hhHHHHHHHHHHH
Confidence 7888889998831111 0234556677888888887532111111 11111345555566666 6778999999999
Q ss_pred HhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh-hHHHHhhccccHHHHHHHHhcC
Q 041408 323 DACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD-GRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 323 ~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e-~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
.+|.-+ .+...+.+ ++......|.+..+..++..|+-||..+-++.+ ...++.. -||.+++.|++-
T Consensus 488 ~~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~---hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA---HVPPIMQELLKL 555 (1010)
T ss_pred HHHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh---hhhHHHHHHHHH
Confidence 999522 33333332 445555556532366777777777887766443 4455533 366666666654
No 352
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.91 E-value=2.6e+02 Score=27.17 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH
Q 041408 160 LQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 160 ~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
..+...+..|++. +..++++.-|+.++.-+++....+. .-+|..+++-+++..+. +-..|+.++..+...-++
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~----VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSA----VSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHH----HHHHHHHHHHHHHHHHHH
Confidence 4456677777664 6788999999988877765444333 34666777777665433 256677777666432221
Q ss_pred HHhhhhchhchHHHHH-HHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 238 MKLSAFEIDKIVESFT-WVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 238 ~~~~v~~~~g~i~~Lv-~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
.+.. ....++ .+|.... ..+.-+++.|-.+|..+...-.. +-+++.|+..++.. ++.++..
T Consensus 163 --~i~~----~ld~lv~~Ll~ka~---~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~--n~r~r~~ 224 (334)
T KOG2933|consen 163 --SIDQ----ELDDLVTQLLHKAS---QDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHS--NPRVRAK 224 (334)
T ss_pred --HHHH----HHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhh--chhhhhh
Confidence 1211 222233 3333210 14455788888999887654321 23566677777777 8888777
Q ss_pred HHHHHHHhC
Q 041408 317 ALKLMLDAC 325 (425)
Q Consensus 317 A~~aL~~L~ 325 (425)
++....+..
T Consensus 225 a~~~~~~~v 233 (334)
T KOG2933|consen 225 AALCFSRCV 233 (334)
T ss_pred hhccccccc
Confidence 776555443
No 353
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=48.71 E-value=98 Score=29.34 Aligned_cols=58 Identities=17% Similarity=0.004 Sum_probs=27.5
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHH
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILF 364 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~ 364 (425)
.||.|.+.|.+....+-+|..|+.||..++. ..+++.|.+.+.+. ++.+.+.+.-+|.
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~-~~vv~esc~vald 276 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDE-ERVVRESCEVALD 276 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 3555555554443345556666665554432 23445555555443 3444444333333
No 354
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=48.57 E-value=7.6 Score=26.35 Aligned_cols=13 Identities=23% Similarity=0.958 Sum_probs=8.7
Q ss_pred CCCCcccCcCCcc
Q 041408 68 EIPEYFICPISLQ 80 (425)
Q Consensus 68 ~~p~~~~Cpi~~~ 80 (425)
++|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 7899999999974
No 355
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.43 E-value=14 Score=22.91 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 041408 109 NAECPVTKQP 118 (425)
Q Consensus 109 ~~~cP~~~~~ 118 (425)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4689999864
No 356
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.27 E-value=9.6 Score=22.34 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 041408 110 AECPVTKQPL 119 (425)
Q Consensus 110 ~~cP~~~~~l 119 (425)
..||.|+..|
T Consensus 15 ~~Cp~CG~~F 24 (26)
T PF10571_consen 15 KFCPHCGYDF 24 (26)
T ss_pred CcCCCCCCCC
Confidence 3455555443
No 357
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=47.55 E-value=4.3e+02 Score=29.23 Aligned_cols=110 Identities=8% Similarity=-0.047 Sum_probs=65.8
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
.+|.+...++. ..+.++.+-.+.+..+-...+..-........+|.++.+-.+. ..+.+.+..+.+.-++..
T Consensus 438 llp~~~~~l~d------e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 438 LLPLLIGNLKD------EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQ 509 (759)
T ss_pred cChhhhhhcch------hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHh
Confidence 55666667765 7788888888777665444443333233445788888887776 778888888888877764
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.. ..+.+.-..+.+...|.+. ...+.+.|+..|..++.
T Consensus 510 ~~--~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 510 LG--VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE 547 (759)
T ss_pred hh--hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence 33 2222222222222223332 34566777777776665
No 358
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.80 E-value=2.5e+02 Score=29.61 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=62.7
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
..++.+...|.......+...+..++.+|+|+... ..++.+...+... ...+...|..|+++|..
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~------------~~i~~l~~~l~~~---~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP------------SSIKVLEPYLEGA---EPLSTFIRLAAILALRN 506 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh------------hHHHHHHHhcCCC---CCCCHHHHHHHHHHHHH
Confidence 45667777665432221122245567888877542 2344444444411 12457789999999998
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
++..... -+-+.|+.++.+...++++|-+|..+|...
T Consensus 507 ~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 507 LAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 8754332 234677788877655788998888887764
No 359
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=46.59 E-value=91 Score=26.02 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=56.2
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhc--cCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--NRMIMVESGAVFELIELELT--ASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~--~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|-+-|+.+ ++..+-.|+.+|-.+..+.. -...+.....+..|+.++.. ..+..++..++..+.....
T Consensus 37 ~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567778888888 99999999999999887543 55566666777889999975 3367899999998887765
No 360
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.35 E-value=16 Score=41.21 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=33.6
Q ss_pred ccCcCCccC-----CCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQI-----MKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~-----m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|.||++- .-+|-+. .||--.||.|.+-=.+++ +..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG--~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDG--NQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcC--CccCCccCCchh
Confidence 389999965 4456554 588889999985433343 789999998765
No 361
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.10 E-value=3.8e+02 Score=31.92 Aligned_cols=153 Identities=12% Similarity=0.167 Sum_probs=87.2
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHh-cCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHF-FKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~-L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
.||.|.++=-+++.. ...|..-+++ |..+......... + .++.-|+.-|.+ ....+|+.++-+|..
T Consensus 999 LIPrLyRY~yDP~~~-----Vq~aM~sIW~~Li~D~k~~vd~y~-n-eIl~eLL~~lt~------kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKK-----VQDAMTSIWNALITDSKKVVDEYL-N-EILDELLVNLTS------KEWRVREASCLALAD 1065 (1702)
T ss_pred hhHHHhhhccCCcHH-----HHHHHHHHHHHhccChHHHHHHHH-H-HHHHHHHHhccc------hhHHHHHHHHHHHHH
Confidence 566666654444332 4556666666 4444332221111 1 577777777776 788999999999999
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHH---HHHHHHhCC--CC-C--chHHHHhhCchHHHHH--Hhhc
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAA---LKLMLDACP--SG-R--NRMIMVESGAVFELIE--LELT 349 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A---~~aL~~L~~--~~-~--n~~~iv~~G~v~~Lv~--lL~~ 349 (425)
|..+.+.-...-.-..+...+++.+.+= ...+|++| +.+|..||. .+ . .+..-+-+.++|.|++ .+ +
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c
Confidence 9998775544321123444455555433 44556655 555666653 11 1 1112222346666654 12 1
Q ss_pred cCCcchHHHHHHHHHHHhCCH
Q 041408 350 ASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 350 ~~~~~~~e~Al~~L~~L~~~~ 370 (425)
. -.++...+++++..|+...
T Consensus 1143 ~-v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1143 K-VNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred c-hHHHHHHHHHHHHHHHHhc
Confidence 1 3678888999999998844
No 362
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=45.88 E-value=93 Score=30.95 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHH-HHHhCCHhhHHH
Q 041408 297 FQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGIL-FHLCSCADGRAQ 375 (425)
Q Consensus 297 i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L-~~L~~~~e~r~~ 375 (425)
+.-+++=|..+ .+...|..++--|..-|.+++.+..+...|.+..+++.+.+.++......++.++ .-++... .-..
T Consensus 23 v~ylld~l~~~-~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESS-SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMH 100 (361)
T ss_pred HHHHHhhcccC-CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchh
Confidence 45555555533 3567888999999999999999999999999999999996543442444444444 4444433 2233
Q ss_pred HhhccccHHHHHHHHh
Q 041408 376 FLSHRAAIAVVTKRIM 391 (425)
Q Consensus 376 ~~~~~g~i~~Lv~ll~ 391 (425)
+..+......+++++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3344555555566554
No 363
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.23 E-value=21 Score=38.43 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLP 120 (425)
Q Consensus 109 ~~~cP~~~~~l~ 120 (425)
..+||.|+.++.
T Consensus 41 ~~fC~~CG~~~~ 52 (645)
T PRK14559 41 EAHCPNCGAETG 52 (645)
T ss_pred cccccccCCccc
Confidence 356777776653
No 364
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.21 E-value=1.1e+02 Score=32.95 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=51.4
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
.+..++.-|.. .++-+|..|+..+..++..+. +..+..+.++...++-|.+. +.-+|++|...+..|-.
T Consensus 347 Lv~ll~ERl~D------~~py~RtKalqv~~kifdl~s--k~~~~r~ev~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 347 LVGLLVERLSD------TYPYTRTKALQVLEKIFDLNS--KTVGRRHEVIRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHhhc------cchHHHHHHHHHHHHHHhCcc--cccchHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 44555555554 788999999999999887554 22333456778888899988 88999999998887754
No 365
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=19 Score=36.17 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=29.7
Q ss_pred cccCcCCccCCCCc----eecCCCccccHHHHHHHHHcCC---CCCCCCC
Q 041408 72 YFICPISLQIMKDP----VTAITGITYDRESIEHWLFQGN---NNAECPV 114 (425)
Q Consensus 72 ~~~Cpi~~~~m~dP----V~~~~g~t~~r~~I~~~~~~~~---~~~~cP~ 114 (425)
...|+||..-..++ .+..|||.||..|..+|+.... ...+||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 36799999332233 2456999999999999997322 2456766
No 366
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=43.87 E-value=1.8e+02 Score=24.69 Aligned_cols=73 Identities=11% Similarity=0.199 Sum_probs=53.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccc----cCChHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQR----VIAQQGINAALKLM 321 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~aL 321 (425)
.++..+.+-|++ +++.++-.|+.+|..+..+-..... .+.+.+++..|++++... ..++.+++..+..|
T Consensus 38 ~a~rai~krl~~------~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 38 LAVRLLAHKIQS------PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 467778888887 8899999999999888876544432 233458899999999641 12678888888887
Q ss_pred HHhC
Q 041408 322 LDAC 325 (425)
Q Consensus 322 ~~L~ 325 (425)
..-+
T Consensus 112 ~~W~ 115 (139)
T cd03567 112 YSWT 115 (139)
T ss_pred HHHH
Confidence 6554
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.31 E-value=14 Score=33.96 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=28.8
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCC-------CCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN-------NNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~-------~~~~cP~~~~~l~ 120 (425)
+.+.||+|+..|.-.-+.+.+....+.- .+....-+ ....||.|+-...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d-~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~ 59 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRD-SDFCPRYKGVNPLFYEVWVCPHCGYAAF 59 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeec-CCCccccCCCCCeeeeEEECCCCCCccc
Confidence 5688999999998887766554433211 11111101 1247999996654
No 368
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.11 E-value=4.3e+02 Score=27.92 Aligned_cols=145 Identities=15% Similarity=0.039 Sum_probs=74.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc--cCChHHHHHHHHHHHHh
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR--VIAQQGINAALKLMLDA 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~~A~~aL~~L 324 (425)
.++..+...+.+ +.... ..|+.++..+...-. --+...+..+..+++++ ...+.++..|.-++.+|
T Consensus 357 ~a~~~i~~~i~~------~~~~~-~ea~~~~~~~~~~~~-----~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~l 424 (574)
T smart00638 357 PALKFIKQWIKN------KKITP-LEAAQLLAVLPHTAR-----YPTEEILKALFELAESPEVQKQPYLRESALLAYGSL 424 (574)
T ss_pred HHHHHHHHHHHc------CCCCH-HHHHHHHHHHHHhhh-----cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 567777777775 33221 233344433322210 01224567777887653 12445666666666655
Q ss_pred C----CCCCchHHHHhhCchHHHHHHhhcc---CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHh---cCC
Q 041408 325 C----PSGRNRMIMVESGAVFELIELELTA---SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIM---QVS 394 (425)
Q Consensus 325 ~----~~~~n~~~iv~~G~v~~Lv~lL~~~---~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~---~~s 394 (425)
. ...+.....+-...++.|.+.|... .+...+..++.+|.|+-. ...++.|...+. ..+
T Consensus 425 v~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~ 493 (574)
T smart00638 425 VRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLS 493 (574)
T ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCC
Confidence 4 3333221223345778888777542 133344556777776643 122333443333 114
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+-.|+.+|..++...+.
T Consensus 494 ~~iR~~Av~Alr~~a~~~p~ 513 (574)
T smart00638 494 TFIRLAAILALRNLAKRDPR 513 (574)
T ss_pred HHHHHHHHHHHHHHHHhCch
Confidence 45667777777777654443
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.91 E-value=1.6e+02 Score=24.82 Aligned_cols=73 Identities=11% Similarity=0.271 Sum_probs=53.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChH--HHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQ--GINAALKLMLD 323 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~--~~~~A~~aL~~ 323 (425)
.++..|.+-|.+ +++.++..|+.+|..+..+-..... .+.+..++..|++++.+....+. +++.++..|..
T Consensus 42 ea~~~l~krl~~------~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 42 EAARALRKRLKH------GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 567778888888 8999999999999998876544432 23345799999999987622222 78888887765
Q ss_pred hC
Q 041408 324 AC 325 (425)
Q Consensus 324 L~ 325 (425)
..
T Consensus 116 W~ 117 (140)
T PF00790_consen 116 WA 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 370
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=42.88 E-value=12 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.539 Sum_probs=18.0
Q ss_pred ceecCCCc-----cccHHHHHHHHHcCCCCCCCCCC
Q 041408 85 PVTAITGI-----TYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 85 PV~~~~g~-----t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
|.+.||+- ..=+.|+++|+...+ ...|+.|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~-~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESG-NRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT--SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcC-CCcCCCC
Confidence 66777652 245789999998643 5678876
No 371
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=42.65 E-value=19 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=32.4
Q ss_pred cccCcCCccCCCC--cee-cCCC------ccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKD--PVT-AITG------ITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 72 ~~~Cpi~~~~m~d--PV~-~~~g------~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
..-|.||.+...+ =|+ +++| +-||..|+++|-.. ..++|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~---~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE---RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh---ccCCCcccce
Confidence 4559999988877 554 4676 45999999999644 3678887643
No 372
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.49 E-value=1.3e+02 Score=29.36 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHh------hcch
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQ------RLKP 294 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~------~~~~ 294 (425)
+-.|+..|..+.........++...++++..|+++++... .-..++|..|..+|..++....-...+ .+..
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~---~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEE---KVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 5667777777777777777777765679999999998521 344678899999999998855422221 2345
Q ss_pred hHHHHHHHH
Q 041408 295 QIFQNIIRV 303 (425)
Q Consensus 295 g~i~~Lv~l 303 (425)
|+++.+++-
T Consensus 316 GiL~~llR~ 324 (329)
T PF06012_consen 316 GILPQLLRK 324 (329)
T ss_pred ccHHHHHHH
Confidence 666655543
No 373
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.39 E-value=27 Score=25.79 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred CccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHH
Q 041408 91 GITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTL 131 (425)
Q Consensus 91 g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l 131 (425)
-+|||..|-+.-+. ..||.|+-.|.. ....|.-.|
T Consensus 28 EcTFCadCae~~l~-----g~CPnCGGelv~-RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRLH-----GLCPNCGGELVA-RPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhhc-----CcCCCCCchhhc-CcCChHHHH
Confidence 46999999887764 479999988875 666665444
No 374
>PLN02436 cellulose synthase A
Probab=42.37 E-value=19 Score=40.48 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=33.6
Q ss_pred ccCcCCccC-----CCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQI-----MKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~-----m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|.||++- .-+|-+. .||--.||.|.+-=.+++ +..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg--~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREG--NQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC--CccCcccCCchh
Confidence 489999964 3455554 488889999985444443 789999998775
No 375
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=42.33 E-value=10 Score=32.74 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.2
Q ss_pred CcccCcCCccCCCCceecCC
Q 041408 71 EYFICPISLQIMKDPVTAIT 90 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~ 90 (425)
++.+||||++.=.+.|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998854
No 376
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=42.27 E-value=27 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.020 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhh
Q 041408 313 GINAALKLMLDACPSGRNRMIMVESGAVFELIELEL 348 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~ 348 (425)
+|..|+++|.++.. .-++|+|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 35667777777654 446788887774
No 377
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.13 E-value=1.1e+02 Score=23.83 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 250 ESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 250 ~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
......|+. ..+.+|.++...|..|....+ .......+++..+...|++. ++=+=-+|...|..|+...
T Consensus 6 ~~al~~L~d------p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 6 QEALSDLND------PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHccC------CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHC
Confidence 334445554 667789999999999988776 12222246788888888887 6666677888888887643
No 378
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.07 E-value=1.1e+02 Score=25.52 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=55.1
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcc-hHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKK-TTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~-~~e~Al~~L~~L~~ 368 (425)
.++..|-+-|.++ ++..+-.|+..|-.+..+. .-...+...+.+..|+.++....+.. +++.++.++..-+.
T Consensus 37 ~a~r~l~krl~~~--n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNK--NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3566777778887 9999999999999888753 35566777889999999987653333 88888888877665
No 379
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=41.32 E-value=4.9e+02 Score=28.12 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhch--hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEI--DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~--~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
+-.|+.+|..+..+....-.+.... ...+..++..++ +++.-+.-++++|.|+-.+...+..+... ..
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-------~~~an~ll~vR~L~N~f~~~~g~~~~~s~---~~ 630 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-------ADPANQLLVVRCLANLFSNPAGRELFMSR---LE 630 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-------cchhHHHHHHHHHHHhccCHHHHHHHHHH---HH
Confidence 5667777766554443322222210 123333333333 34555677888888887775554444322 22
Q ss_pred HHHHHh---ccccCChHHHHHHHHHHHHhCC--CCCchHHHHhhCchHHHHHHhhcc----CCcchHHHHHHHHHHHhCC
Q 041408 299 NIIRVL---KQRVIAQQGINAALKLMLDACP--SGRNRMIMVESGAVFELIELELTA----SEKKTTELILGILFHLCSC 369 (425)
Q Consensus 299 ~Lv~lL---~~~~~~~~~~~~A~~aL~~L~~--~~~n~~~iv~~G~v~~Lv~lL~~~----~~~~~~e~Al~~L~~L~~~ 369 (425)
.+...+ +.. .+...+.+-+....|++. ...+-+ .|..+.|...+... +|-++.-+++-||.+|+..
T Consensus 631 ~i~~~~~~~~s~-~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 631 SILDPVIEASSL-SNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 222222 222 123444444444445553 222221 34444444444332 2334566778889999987
Q ss_pred HhhHHHHhhccccHHHHHHHHhcC
Q 041408 370 ADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
+....++.. .-.+..+++.+...
T Consensus 706 ~~~~~~~A~-~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 706 DASVIQLAK-NRSVDSIAKKLKEA 728 (745)
T ss_pred cHHHHHHHH-hcCHHHHHHHHHHh
Confidence 777777744 44678888877654
No 380
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=1e+02 Score=32.46 Aligned_cols=63 Identities=6% Similarity=-0.037 Sum_probs=35.3
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L 324 (425)
.++..|.+|.. +.|..+|.-.+-+|.-.|.+...+. ++..|=.+..+. +.=+|..|.-++.-+
T Consensus 586 ~lv~tvelLs~-----shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~--~dfVRQ~AmIa~~mI 648 (926)
T COG5116 586 LLVGTVELLSE-----SHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT--NDFVRQSAMIAVGMI 648 (926)
T ss_pred hhhHHHHHhhh-----ccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc--HHHHHHHHHHHHHHH
Confidence 34555666654 3667777777777766666544322 234444455555 555666666655543
No 381
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.80 E-value=2.6e+02 Score=24.86 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHH----hccccCChHHHHHHHHHHHHh
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRV----LKQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~l----L~~~~~~~~~~~~A~~aL~~L 324 (425)
...|+..|+. +.+.........+|..|.......+. ..|+++.++.- +.+. |+.++..++.++..|
T Consensus 103 H~~Ll~~L~~-----E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~--d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 103 HRGLLLALQA-----EKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHR--DPNVRVAALSCLGAL 172 (182)
T ss_pred HHHHHHHHhc-----ccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 4667777876 46777888888999888887665443 24666655554 4555 888899999888887
Q ss_pred CCCC
Q 041408 325 CPSG 328 (425)
Q Consensus 325 ~~~~ 328 (425)
....
T Consensus 173 ~s~~ 176 (182)
T PF13251_consen 173 LSVQ 176 (182)
T ss_pred HcCC
Confidence 6643
No 382
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=40.36 E-value=7.2 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=8.5
Q ss_pred ccCcCCccCCCCc
Q 041408 73 FICPISLQIMKDP 85 (425)
Q Consensus 73 ~~Cpi~~~~m~dP 85 (425)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4577777766655
No 383
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.86 E-value=22 Score=39.93 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=33.7
Q ss_pred ccCcCCccC-----CCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQI-----MKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~-----m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|.||++- .-||-+. .||--.||.|.+-=.+++ +..||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g--~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEG--NQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcC--CccCCccCCchh
Confidence 469999864 4456555 588889999985444443 789999998875
No 384
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.76 E-value=2.9e+02 Score=28.63 Aligned_cols=111 Identities=6% Similarity=0.004 Sum_probs=63.0
Q ss_pred hHHHHHHHHh----ccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC
Q 041408 295 QIFQNIIRVL----KQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 295 g~i~~Lv~lL----~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~ 369 (425)
|.+..++..+ .++ +...+..|++.|.|+... ++-+..... -.+..++.=|-++.+.+++-.|..+|..+...
T Consensus 254 ~lL~s~~~~la~ka~dp--~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDP--SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 4444444444 444 667888999999999886 443333332 23344444444443667777778888877776
Q ss_pred HhhHHHHhhccccHHHHH---HHHhcCChHHHHHHHHHHHHHhcc
Q 041408 370 ADGRAQFLSHRAAIAVVT---KRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv---~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.+++..- .+-++.-+ .+.....++.+-.|..++-.|++.
T Consensus 331 ~~~~~l~---~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 331 ASNDDLE---SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred hhhcchh---hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 5555422 22334333 333344566666666665555543
No 385
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=39.44 E-value=1.5e+02 Score=28.05 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhCCCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC---HhhH-------------
Q 041408 311 QQGINAALKLMLDACPSGR-NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC---ADGR------------- 373 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~---~e~r------------- 373 (425)
...|......|..|..+.. .-.. ...+.|..+++++..+.|++..-.+..++..+... ++..
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI 174 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPI 174 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeee
Confidence 3556666666666654321 1111 22456667777776555666666666555555321 1111
Q ss_pred ----------------------HHHhh----ccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 374 ----------------------AQFLS----HRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 374 ----------------------~~~~~----~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
..+.. ..-.+|.|++.|.+.+..++..++.+|..++..-+.
T Consensus 175 ~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 175 TFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred eeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 11111 124588888888888888999999999887765443
No 386
>PRK01343 zinc-binding protein; Provisional
Probab=39.28 E-value=28 Score=24.68 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=21.8
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPV 114 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~ 114 (425)
...||+|+..+..+..--|....-..-+-+|+..+ +..|.
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~---Y~Ip~ 48 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGS---YVIPG 48 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCC---cccCC
Confidence 35688888876544332344433344456676653 44454
No 387
>PRK14707 hypothetical protein; Provisional
Probab=39.16 E-value=8.8e+02 Score=30.41 Aligned_cols=159 Identities=8% Similarity=-0.041 Sum_probs=87.2
Q ss_pred HHHHHHHHH-hcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHH
Q 041408 221 LEGALSILH-FFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQN 299 (425)
Q Consensus 221 ~~~Al~~L~-~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 299 (425)
...|...|. .|.. +......+.. -.+..++.-|+.+ +.+..++..|..+-..|+...+.+..+- ...+..
T Consensus 307 c~~Aa~~la~rl~~-d~~l~~~~~~--~~~~~~LNalsKW----pd~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~ 377 (2710)
T PRK14707 307 CAEAAIALAERLAD-DPELCKALNA--RGLSTALNALSKW----PDNPVCAAAVSALAERLVADPELRKDLE--PQGVSS 377 (2710)
T ss_pred HHHHHHHHHHHHhc-cHhhhhccch--HHHHHHHHHhhcC----CCchhHHHHHHHHHHHhccCHhhhcccc--hhHHHH
Confidence 555554444 3554 3333333332 3455566666654 5778888888888888888776655443 223455
Q ss_pred HHHHh-ccccCChHHHHHHHHHHH-HhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHH-HhCCHhhHHHH
Q 041408 300 IIRVL-KQRVIAQQGINAALKLML-DACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFH-LCSCADGRAQF 376 (425)
Q Consensus 300 Lv~lL-~~~~~~~~~~~~A~~aL~-~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~-L~~~~e~r~~~ 376 (425)
.+.-| +-+ +..+...|+.+|. .|....+-++.|--.|+ ..+++-|..=++..++..++..|.- ++...+-++.+
T Consensus 378 ~lNalsKWp--~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~ 454 (2710)
T PRK14707 378 VLNALSKWP--DTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAGRLAHDTELCKAL 454 (2710)
T ss_pred HHhhhhcCC--CchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhc
Confidence 55555 444 4455555555554 66656666666655444 4455555433466666666666654 44455555554
Q ss_pred hhccccHHHHHHHHhcC
Q 041408 377 LSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 377 ~~~~g~i~~Lv~ll~~~ 393 (425)
. ...|.-.++-+.+.
T Consensus 455 -~-p~~va~~LnalSKW 469 (2710)
T PRK14707 455 -D-PINVTQALDALSKW 469 (2710)
T ss_pred -C-hHHHHHHHHHhhcC
Confidence 3 22344444444443
No 388
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=38.61 E-value=28 Score=30.95 Aligned_cols=36 Identities=22% Similarity=0.658 Sum_probs=26.1
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
-+.||.|+.+|-|-|--. -+.+|-+|.. .||.....
T Consensus 87 IYICPFTGKVF~DNt~~n-----PQDAIYDWvS------kCPeN~ER 122 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTHPN-----PQDAIYDWVS------KCPENTER 122 (238)
T ss_pred EEEcCCcCccccCCCCCC-----hHHHHHHHHh------hCCccchh
Confidence 379999999998875332 2678999975 47876443
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.49 E-value=96 Score=33.67 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELI 344 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv 344 (425)
.|.++|+.|+-+|.-++.. +....|..|.+|... +++.+|-.|+.+|.-.|....++..+- .+.||+
T Consensus 567 ~nDDVrRaAVialGFVl~~---------dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~---lLepl~ 633 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFR---------DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAIN---LLEPLT 633 (929)
T ss_pred cchHHHHHHHHHheeeEec---------ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHH---HHhhhh
Confidence 4455555555555444332 234567788888764 689999999999998888776654432 233332
Q ss_pred HHhhccCCcchHHHHHHHHHHHh
Q 041408 345 ELELTASEKKTTELILGILFHLC 367 (425)
Q Consensus 345 ~lL~~~~~~~~~e~Al~~L~~L~ 367 (425)
. + +..-++..|+-+++.+.
T Consensus 634 ~---D-~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 634 S---D-PVDFVRQGALIALAMIM 652 (929)
T ss_pred c---C-hHHHHHHHHHHHHHHHH
Confidence 2 2 23345555555555443
No 390
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=4.6e+02 Score=28.87 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=80.1
Q ss_pred chHHHHHHHHccccc--cccCCHHHHHHHHHHHHHHHhc-ccchhHhh-cchhHHHHHHHHhccccCChHHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDE--SIENHKEIKSHALRILKNIIQA-ASSKFLQR-LKPQIFQNIIRVLKQRVIAQQGINAALKLML 322 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~--~~~~~~~~~~~A~~~L~~L~~~-~~~~~~~~-~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~ 322 (425)
|+++.++..|...-. +.-.++...+-|.+++.++.+. ........ .+.=+++.++..+++. ..=.+..|+..+.
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~--ygfL~Srace~is 485 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN--YGFLKSRACEFIS 485 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc--ccchHHHHHHHHH
Confidence 899999999942100 0113344555666777776551 11111111 1112345555556666 5567788888888
Q ss_pred HhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 323 DACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 323 ~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.++..-.... +-..+.......|.+. +..+.-.|+-||.-+-.+.+-..++.+ -||..++.|+..|
T Consensus 486 ~~eeDfkd~~--ill~aye~t~ncl~nn-~lpv~ieAalAlq~fi~~~q~h~k~sa---hVp~tmekLLsLS 551 (970)
T COG5656 486 TIEEDFKDNG--ILLEAYENTHNCLKNN-HLPVMIEAALALQFFIFNEQSHEKFSA---HVPETMEKLLSLS 551 (970)
T ss_pred HHHHhcccch--HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHhchhhhHHHHh---hhhHHHHHHHHhc
Confidence 8743222222 2233555666667665 666666677777777776666667744 2677777677654
No 391
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=38.14 E-value=1.3e+02 Score=32.99 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHH--HHHHHHhcCCh-
Q 041408 320 LMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIA--VVTKRIMQVSP- 395 (425)
Q Consensus 320 aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~--~Lv~ll~~~s~- 395 (425)
+|+++.. +.++.+.+++.|++..+.+.+..-........+++.|.+++...+.+.......- +. .+-..+.+...
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~-~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEF-IDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHhhcchh
Confidence 8888887 5689999999999999999998665678889999999999997766655433221 22 22233344444
Q ss_pred HHHHHHHHHHHHHhccCC
Q 041408 396 AADDRAILILSLICKFSG 413 (425)
Q Consensus 396 ~~~e~a~~~L~~l~~~~~ 413 (425)
+....|.++|..+..++.
T Consensus 573 ersY~~~siLa~ll~~~~ 590 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSE 590 (699)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 556789999999887644
No 392
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=37.98 E-value=27 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred cCcCCccCCCC--ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKD--PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 74 ~Cpi~~~~m~d--PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
.|+-|.+.+.+ .++..-|..|-..| +.|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C-----------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC-----------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC-----------CCCcccCCcC
Confidence 37778877766 34444555555543 6788887766
No 393
>PRK14707 hypothetical protein; Provisional
Probab=37.94 E-value=9.1e+02 Score=30.27 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=128.1
Q ss_pred CCCCCHHHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhh-cccCCCcccHHHHHHHHH
Q 041408 154 KAPLSKLQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVN-CCDKNQVGGLEGALSILH 229 (425)
Q Consensus 154 ~~~~~~~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~~~~~Al~~L~ 229 (425)
+..++..+|..+++-++ +...+..|+..|.......+.-+..+ +.-.|-..+.-|+. ++. .++..|+..|.
T Consensus 199 ~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~----~~C~~a~~~lA 273 (2710)
T PRK14707 199 RSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADT----PVCAAAASALA 273 (2710)
T ss_pred hcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCc----hHHHHHHHHHH
Confidence 44556677777777774 34666777777755544444444443 34444444555532 222 34777777776
Q ss_pred h-cCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc
Q 041408 230 F-FKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV 308 (425)
Q Consensus 230 ~-L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 308 (425)
. ++ .+....+.+.. --+...+.-|+.+ +.....+..|+.+-..|....+-.. ..+.-.+..++.-|+.=+
T Consensus 274 ~rl~-~~~~l~~al~~--q~vanalNalSKw----pd~~vc~~Aa~~la~rl~~d~~l~~--~~~~~~~~~~LNalsKWp 344 (2710)
T PRK14707 274 ERLV-DDPGLRKALDP--INVTQALNALSKW----ADLPVCAEAAIALAERLADDPELCK--ALNARGLSTALNALSKWP 344 (2710)
T ss_pred HHHh-hhHHHHHhcCH--HHHHHHHhhhhcC----CCchHHHHHHHHHHHHHhccHhhhh--ccchHHHHHHHHHhhcCC
Confidence 5 44 44444444442 3344455555543 3455566667777777776443332 222223444444453222
Q ss_pred CChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHH-HhCCHhhHHHHhhccccHHHHH
Q 041408 309 IAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFH-LCSCADGRAQFLSHRAAIAVVT 387 (425)
Q Consensus 309 ~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~-L~~~~e~r~~~~~~~g~i~~Lv 387 (425)
.+...+++|...-..|+..++-+..+--.|+ ...++-|..=++...+..|+..|.. |....+-++.+ + ..++.-++
T Consensus 345 d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~-a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~-~Q~van~l 421 (2710)
T PRK14707 345 DNPVCAAAVSALAERLVADPELRKDLEPQGV-SSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-D-PQGVSNAL 421 (2710)
T ss_pred CchhHHHHHHHHHHHhccCHhhhcccchhHH-HHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-c-hhhHHHHH
Confidence 3555555555555677777776666544443 4444444332466666666666654 55577777766 3 34577777
Q ss_pred HHHhcCC-hHHHHHHHHHHH
Q 041408 388 KRIMQVS-PAADDRAILILS 406 (425)
Q Consensus 388 ~ll~~~s-~~~~e~a~~~L~ 406 (425)
+-|.+.. ..+...++..|.
T Consensus 422 nalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 422 NALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred HHhhcCCcchhHHHHHHHHH
Confidence 7676663 233444555443
No 394
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=37.59 E-value=1.3e+02 Score=25.46 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=49.4
Q ss_pred CchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHh-hHHHHhhccccHHHHHHHHhc------CChHHHHHHHHHHHHHh
Q 041408 338 GAVFELIELELTASEKKTTELILGILFHLCS-CAD-GRAQFLSHRAAIAVVTKRIMQ------VSPAADDRAILILSLIC 409 (425)
Q Consensus 338 G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e-~r~~~~~~~g~i~~Lv~ll~~------~s~~~~e~a~~~L~~l~ 409 (425)
.++..+..-|.+. ++.++-.|+.+|..+.. ++. -+..+ .....+..|++++.. .+..+++..+.++..-+
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~ev-as~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEV-GKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHH-HhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3556677777765 78888889998888887 443 33444 445678889997743 35688888888885554
Q ss_pred c
Q 041408 410 K 410 (425)
Q Consensus 410 ~ 410 (425)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 4
No 395
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=37.14 E-value=1.1e+02 Score=32.86 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=81.9
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
.++|.|...+.+.+ ...|+.++..+..++..-|. ..|.. -++|.+-.+... ..+..++.+++.++..
T Consensus 389 ~IlplL~~S~~~~~----~~iQ~~~L~~lptv~e~iD~--~~vk~--~ilP~l~~l~~~-----tt~~~vkvn~L~c~~~ 455 (700)
T KOG2137|consen 389 KILPLLYRSLEDSD----VQIQELALQILPTVAESIDV--PFVKQ--AILPRLKNLAFK-----TTNLYVKVNVLPCLAG 455 (700)
T ss_pred HHHHHHHHHhcCcc----hhhHHHHHHhhhHHHHhccH--HHHHH--HHHHHhhcchhc-----ccchHHHHHHHHHHHH
Confidence 34555554444332 35589999888877644332 23433 467776655443 3778899999999988
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
+...-+ +..+ + ..+.++.+-.+.. ++...-.-+++..++.....+....+...++|.++-+....
T Consensus 456 l~q~lD-~~~v-~--d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 456 LIQRLD-KAAV-L--DELLPILKCIKTR--DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHH-HHHh-H--HHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 883211 1111 1 2355566666665 88888888888888877555534444557888888877553
No 396
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.05 E-value=2.3e+02 Score=23.03 Aligned_cols=82 Identities=12% Similarity=0.111 Sum_probs=54.9
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHH
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQ 375 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~ 375 (425)
+|+.|++-|.+. ++++...|..+|...|..+.....++... |. +..|... ..-.|..+.+.+.|-.-
T Consensus 9 ~i~lLv~QL~D~--~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~-l~~L~~~--------g~~Ll~~~lS~~~Gf~~ 75 (115)
T PF14663_consen 9 GIELLVTQLYDP--SPEVVAAALEILEEACEDKEYLEYLVSLR--PS-LDHLGDI--------GSPLLLRFLSTPSGFRY 75 (115)
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhchhhHHHHHHcC--cH-HHHHHHc--------CHHHHHHHHcchHHHHH
Confidence 478999999998 89999999999999999877666666532 33 3444332 23355566666777554
Q ss_pred HhhccccHHHHHHHHh
Q 041408 376 FLSHRAAIAVVTKRIM 391 (425)
Q Consensus 376 ~~~~~g~i~~Lv~ll~ 391 (425)
+ ...|.+..-++.-.
T Consensus 76 L-~~~~~v~~El~~W~ 90 (115)
T PF14663_consen 76 L-NEIGYVEKELDKWF 90 (115)
T ss_pred h-cchhHHHHHHHHHH
Confidence 4 33455555555443
No 397
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=37.05 E-value=4.7e+02 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhc----------------cCCcchHHHHHHHHHHHhCCHhhHH
Q 041408 316 AALKLMLDACPSGRNRMIMVESGAVFELIELELT----------------ASEKKTTELILGILFHLCSCADGRA 374 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~----------------~~~~~~~e~Al~~L~~L~~~~e~r~ 374 (425)
-.+.+|..+|..+.+.....+..++|||.+.=.. .++..++..|+.-|..||.-.-+|.
T Consensus 334 PvlsVL~~car~~R~~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~rm 408 (532)
T KOG4464|consen 334 PVLSVLTECARSHRVMRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNRM 408 (532)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchhhh
Confidence 4466777788888888888888999998874322 1245677888888998988665654
No 398
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.03 E-value=43 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHcc
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLAL 258 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~ 258 (425)
...++..|..|+..++-...++.. |+++.|+.+|.+
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l--~~v~sL~~LL~H 98 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVEL--GAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHc--CCHHHHHHHHCC
Confidence 677888888899887766666654 899999999998
No 399
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=7e+02 Score=28.61 Aligned_cols=155 Identities=11% Similarity=0.052 Sum_probs=96.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
++++.|...|+. .+..++=.|+.-+..++...+ ...+ ..+|...++++... .++.+=..|.-+|..|+.
T Consensus 341 ~vie~Lls~l~d------~dt~VrWSaAKg~grvt~rlp--~~La--d~vi~svid~~~p~-e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 341 FVIEHLLSALSD------TDTVVRWSAAKGLGRVTSRLP--PELA--DQVIGSVIDLFNPA-EDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHhccC------CcchhhHHHHHHHHHHHccCc--HHHH--HHHHHHHHHhcCcC-CchhHHHHHHHHHHHHHh
Confidence 577777777776 777888899999999988766 2222 35778888877655 245677788888888876
Q ss_pred CCCchHHHHhhCchHHHHHHhhcc-------CCcchHHHHHHHHHHHhCCHhhH--HHHhhccccHHHHHHHHhcCChHH
Q 041408 327 SGRNRMIMVESGAVFELIELELTA-------SEKKTTELILGILFHLCSCADGR--AQFLSHRAAIAVVTKRIMQVSPAA 397 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~-------~~~~~~e~Al~~L~~L~~~~e~r--~~~~~~~g~i~~Lv~ll~~~s~~~ 397 (425)
-+=-..-..+ .+||.++.-|.=. ....+.+.|+.+++.++..-+.. +-+.. ...-..|+..++...-.+
T Consensus 410 rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 RGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNC 487 (1133)
T ss_pred cCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhH
Confidence 3321111111 3556666555210 14578899999999998743322 22322 222334445555556678
Q ss_pred HHHHHHHHHHHhccCCC
Q 041408 398 DDRAILILSLICKFSGN 414 (425)
Q Consensus 398 ~e~a~~~L~~l~~~~~~ 414 (425)
+..|.++|-..-+.-++
T Consensus 488 RRAAsAAlqE~VGR~~n 504 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN 504 (1133)
T ss_pred hHHHHHHHHHHhccCCC
Confidence 88888887665554333
No 400
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=36.49 E-value=57 Score=26.40 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc
Q 041408 313 GINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
.-......|..|+..++--..+++.|+++.|+.||...
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 34567788889999999888999999999999999764
No 401
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.55 E-value=1e+02 Score=32.54 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=39.0
Q ss_pred hhHHHHHHHH-hccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHH
Q 041408 294 PQIFQNIIRV-LKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILF 364 (425)
Q Consensus 294 ~g~i~~Lv~l-L~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~ 364 (425)
.|++..|+.. +.++ +.++|++|..||.-+|..+.+ .++..|++|...-+.-++-..+-+|.
T Consensus 550 ~~vv~~lLh~avsD~--nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLG 611 (926)
T COG5116 550 LGVVSTLLHYAVSDG--NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALG 611 (926)
T ss_pred chhHhhhheeecccC--chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhh
Confidence 3677777777 6677 889999999999988876543 44555666654313333333333344
No 402
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.06 E-value=2.7e+02 Score=26.49 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHH----HHHHHhc--------cccCChHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQ----NIIRVLK--------QRVIAQQG 313 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~----~Lv~lL~--------~~~~~~~~ 313 (425)
-++|.+..++.. .+++.|..++.+|..+...-.... ......|..+ .|...|. +. +...
T Consensus 119 liiP~iL~llDD------~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~--s~~L 190 (282)
T PF10521_consen 119 LIIPPILNLLDD------YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE--SLEL 190 (282)
T ss_pred HHHhhHHHHhcC------CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh--hHHH
Confidence 478899999986 789999999999999987544333 1111223322 3333333 22 4556
Q ss_pred HHHHHHHHHHhC
Q 041408 314 INAALKLMLDAC 325 (425)
Q Consensus 314 ~~~A~~aL~~L~ 325 (425)
-..|.-+|..|+
T Consensus 191 l~~ay~~L~~L~ 202 (282)
T PF10521_consen 191 LQAAYPALLSLL 202 (282)
T ss_pred HHHHHHHHHHHH
Confidence 666777776663
No 403
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=34.95 E-value=12 Score=20.29 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=6.2
Q ss_pred ccCcCCccCCCCc
Q 041408 73 FICPISLQIMKDP 85 (425)
Q Consensus 73 ~~Cpi~~~~m~dP 85 (425)
|.||+|...+.++
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 4567766665443
No 404
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=33.47 E-value=21 Score=33.06 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHH---HHHHcCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIE---HWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~---~~~~~~~~~~~cP~~~~~l 119 (425)
++-.+++||=|.+.|.-||--.|....+-+.|- ++|--. ++.|..|..|+
T Consensus 179 evk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHve--HFvCa~CekPF 231 (332)
T KOG2272|consen 179 EVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVE--HFVCAKCEKPF 231 (332)
T ss_pred hhccceeccccccccCCcccccccCchHHHHHHHhccccchh--heeehhcCCcc
Confidence 556677777777777777666665555544442 122111 46777776665
No 405
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.30 E-value=3.5e+02 Score=24.08 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHH----HhhccCCcchHHHHHHHHHHHhCCH
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIE----LELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~----lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
+-..|+..|... .+.......+++|..|..+....+. +.|.++.++. ++.+. |..++..++.++..|....
T Consensus 102 lH~~Ll~~L~~E-~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 102 LHRGLLLALQAE-KSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 445667777654 4677888899999999886542211 2355555544 44554 8889999999998887643
No 406
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.08 E-value=27 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=9.3
Q ss_pred ccHHHHHHHHHc
Q 041408 94 YDRESIEHWLFQ 105 (425)
Q Consensus 94 ~~r~~I~~~~~~ 105 (425)
|||.|+.+|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 407
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.01 E-value=31 Score=28.66 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.8
Q ss_pred CCCCCCCCCCC
Q 041408 109 NAECPVTKQPL 119 (425)
Q Consensus 109 ~~~cP~~~~~l 119 (425)
...||.|+..+
T Consensus 26 p~vcP~cg~~~ 36 (129)
T TIGR02300 26 PAVSPYTGEQF 36 (129)
T ss_pred CccCCCcCCcc
Confidence 35677776655
No 408
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.00 E-value=4.3e+02 Score=24.97 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
++..+.+|+..|......-+... ....-+..|+.+..+.-.+. .....++..|..|.....-....+ ..++.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~---~~i~~ 83 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESA---VKILR 83 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhH---HHHHH
Confidence 34667778888866655433221 22334677777776554332 224445555554442111000000 02333
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
.+..-..-. .-....|..+-.+|..+........ .....+++..+++++... .||+.--.+...+..+..
T Consensus 84 ~l~~~~~~q----~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gE-kDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 84 SLFQNVDVQ----SLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGE-KDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHhCChh----hhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHH
Confidence 333322210 0224456677788888776543222 223346888888888654 688887777777776654
No 409
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=27 Score=33.18 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHcCC----------CCCCCCCCCCCCCC
Q 041408 93 TYDRESIEHWLFQGN----------NNAECPVTKQPLPK 121 (425)
Q Consensus 93 t~~r~~I~~~~~~~~----------~~~~cP~~~~~l~~ 121 (425)
..||+|+-+|+.... |.-+||.|++.++-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 357899999997432 45789999988764
No 410
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=32.42 E-value=4e+02 Score=27.69 Aligned_cols=82 Identities=10% Similarity=0.059 Sum_probs=52.3
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh--------------HHHHhhccccHHHHHHHHhc-CC
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADG--------------RAQFLSHRAAIAVVTKRIMQ-VS 394 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~--------------r~~~~~~~g~i~~Lv~ll~~-~s 394 (425)
-...+.+.+.|+.|+++|....+...+..|...|..+.....+ -.++ ...-.|..|++.++. ..
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L-~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQL-VSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHH-hChHHHHHHHHHHhcCCC
Confidence 3445567899999999997544677888888887777542211 1223 234567778887774 22
Q ss_pred hHHHHHHHHHHHHHhccC
Q 041408 395 PAADDRAILILSLICKFS 412 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~ 412 (425)
...--++++++..|-+..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 333447787777776543
No 411
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=32.00 E-value=2.1e+02 Score=23.48 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHHHHHHHhccccC-C-hHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHH
Q 041408 295 QIFQNIIRVLKQRVI-A-QQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGIL 363 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~-~-~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L 363 (425)
.++..+.++|..... . ......++.++..... --....+.+.+.++.+.++|. ++...+.|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~---~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQ---SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTT---SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcC---CHHHHHHHHHhC
Confidence 456666666655410 1 6788899999999887 345556677889999999994 456688887765
No 412
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.68 E-value=31 Score=22.04 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 041408 109 NAECPVTKQPL 119 (425)
Q Consensus 109 ~~~cP~~~~~l 119 (425)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 36799998754
No 413
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=25 Score=34.81 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCCcccCcCCccCCCCce----ecCCCccccHHHHHHHHHcCC-C---CCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 69 IPEYFICPISLQIMKDPV----TAITGITYDRESIEHWLFQGN-N---NAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV----~~~~g~t~~r~~I~~~~~~~~-~---~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
-..+|.||++..+|.+-. +-.+|..||-..|++.=...+ . ..--|++|..+- +.--||..=+.-++.|..
T Consensus 98 s~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiI--tiQdP~~lek~~~~~F~h 175 (518)
T KOG0883|consen 98 SEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADII--TIQDPNNLEKFNMSDFYH 175 (518)
T ss_pred CCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhcee--eecCcchhhccchhhHHH
Confidence 467899999999998875 236999999999987422111 0 123466665542 222244333333555544
No 414
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.80 E-value=43 Score=27.13 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLPK 121 (425)
Q Consensus 109 ~~~cP~~~~~l~~ 121 (425)
..+||.|+..+..
T Consensus 26 PivCP~CG~~~~~ 38 (108)
T PF09538_consen 26 PIVCPKCGTEFPP 38 (108)
T ss_pred CccCCCCCCccCc
Confidence 3568888876654
No 415
>PLN02400 cellulose synthase
Probab=30.48 E-value=28 Score=39.28 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=33.0
Q ss_pred ccCcCCccC-----CCCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQI-----MKDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~-----m~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|.||++- .-+|-+. .||--.||.|.+-=.++ |+..||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERke--Gnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKD--GTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheeccc--CCccCcccCCccc
Confidence 489999964 3445554 58888999998432233 3789999998875
No 416
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.84 E-value=1.2e+02 Score=29.18 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=42.2
Q ss_pred hhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC---------------CchHHHHhhCchHHHHHHhhc
Q 041408 294 PQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG---------------RNRMIMVESGAVFELIELELT 349 (425)
Q Consensus 294 ~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~---------------~n~~~iv~~G~v~~Lv~lL~~ 349 (425)
...+..+++-|... +...+-.|+++|.-++.+. .|...+.+.|++++|+++|..
T Consensus 59 ~~~i~~ll~~L~~~--~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESS--DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhcccc--chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35677888888877 7778888888888776521 177778899999999999964
No 417
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.81 E-value=56 Score=36.63 Aligned_cols=42 Identities=12% Similarity=-0.017 Sum_probs=26.3
Q ss_pred ccCcCCccCCCCceec-C-CCc-----cccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTA-I-TGI-----TYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~-~g~-----t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..||-|+... +... | ||. .||..| .+. . +...||.|+.....
T Consensus 627 RfCpsCG~~t--~~frCP~CG~~Te~i~fCP~C--G~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 627 RKCPSCGKET--FYRRCPFCGTHTEPVYRCPRC--GIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred ccCCCCCCcC--CcccCCCCCCCCCcceeCccc--cCc--C-CCCcCCCCCCCCCc
Confidence 5788888775 2222 3 774 478888 111 1 24679999988754
No 418
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=29.75 E-value=6.5e+02 Score=26.06 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=97.2
Q ss_pred HHHHHHHHhcC---hhHHHHHHHHHHHHhhhc-hhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 161 QIIKLIKDIWK---PELQTKTLIQLEVFAAEN-ERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 161 ~i~~lv~~l~s---~~~~~~Al~~L~~la~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+..++..+++ .+.+..|+..|..+.-++ -..++.-. .-.+..++..|++.... .....|+++|..+..+..
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~---~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDE---IIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhh---HHHHHHHHHHHHHHHhch
Confidence 34555555543 266788888886554443 22222111 23456677777653222 338889999999887654
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHH-HHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHAL-RILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~-~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
. .+.....-+|..++..-.. ...++...|. .++.-+++...... |..+..++... +.+.--
T Consensus 363 ~--~l~DstE~ai~K~Leaa~d------s~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~--D~~~~~ 424 (516)
T KOG2956|consen 363 A--RLFDSTEIAICKVLEAAKD------SQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA--DEPRAV 424 (516)
T ss_pred H--hhhchHHHHHHHHHHHHhC------CchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC--cchHHH
Confidence 2 3333322355556555554 4455444444 55555565554333 23333333333 333333
Q ss_pred HHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 316 AALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 316 ~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..+..++..-+ .-..++ ....|.+|+--.+. +..++..|+-.|-.+..
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 44445555554221 111122 35778888877664 56667777666665543
No 419
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.88 E-value=48 Score=24.99 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=20.2
Q ss_pred ccCcCCccCC-----CCceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIM-----KDPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m-----~dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-.|.||++-. -+|-+. .|+--.||.|.+-=.+.+ +..||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg--~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG--NQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS---SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC--cccccccCCCccc
Confidence 3688887533 233333 477788999988766665 6899999988753
No 420
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=28.46 E-value=28 Score=20.32 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=5.4
Q ss_pred cCcCCccCC
Q 041408 74 ICPISLQIM 82 (425)
Q Consensus 74 ~Cpi~~~~m 82 (425)
.||||.+.|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 466666555
No 421
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.20 E-value=3.1e+02 Score=23.60 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHh-hccccHHHHHHHHhc-C--ChHHHHHHHHHH
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFL-SHRAAIAVVTKRIMQ-V--SPAADDRAILIL 405 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~-~~~g~i~~Lv~ll~~-~--s~~~~e~a~~~L 405 (425)
.-..+++....+.|+..+.+. +..+...++.++..|... .|..+. +-+-.+..++.-++. . +..-|+.++.++
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l 141 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEIL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 344556777888888888775 688888999999988852 233221 222334444442332 2 236778899999
Q ss_pred HHHhccCCChHHHHHHh
Q 041408 406 SLICKFSGNFNFVVQEM 422 (425)
Q Consensus 406 ~~l~~~~~~~~~~v~e~ 422 (425)
..+|+. .+.+.|+
T Consensus 142 ~~l~~~----p~~l~~l 154 (168)
T PF12783_consen 142 RELCKD----PQFLVDL 154 (168)
T ss_pred HHHHhC----hhHHHHH
Confidence 999986 4555553
No 422
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.16 E-value=1.3e+02 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=31.2
Q ss_pred chHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 339 AVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 339 ~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
+|+.||.-|.+. ++++...|+.+|...|...+....++.
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 567888888775 788999999999999998866655544
No 423
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=28.12 E-value=1.9e+02 Score=29.37 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred CCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHH
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHT 130 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~ 130 (425)
...-+..|.||.|..-|. ---+.+-+....+.+.|-.|+.++..+..-.|+..
T Consensus 122 d~t~~~~Y~Cp~C~kkyt------------~Lea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e 174 (436)
T KOG2593|consen 122 DDTNVAGYVCPNCQKKYT------------SLEALQLLDNETGEFHCENCGGELVEDENKLPSKE 174 (436)
T ss_pred hccccccccCCccccchh------------hhHHHHhhcccCceEEEecCCCchhcccccCchHH
Confidence 445678899999876553 33334444432236889999988865455556544
No 424
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.05 E-value=19 Score=33.96 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCcccCcCCccCCCC-------------cee-cCCCccccHHHHHH-HHHcCC--CCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD-------------PVT-AITGITYDRESIEH-WLFQGN--NNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-------------PV~-~~~g~t~~r~~I~~-~~~~~~--~~~~cP~~~~~l~~ 121 (425)
+.-|.|+.|...+.. |-. .-||.-|.|-++.+ ++.... -.+.||.|+..|-+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 667888888876532 221 13677777765433 333221 24789999988865
No 425
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=27.86 E-value=30 Score=20.03 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.5
Q ss_pred ccCcCCccCCCCcee
Q 041408 73 FICPISLQIMKDPVT 87 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~ 87 (425)
|.|++|...|.+.-.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T PF12171_consen 2 FYCDACDKYFSSENQ 16 (27)
T ss_dssp CBBTTTTBBBSSHHH
T ss_pred CCcccCCCCcCCHHH
Confidence 788888888877643
No 426
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=27.60 E-value=22 Score=30.55 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=17.2
Q ss_pred CCCccccHHHHHHHHHcCC--------CCCCCCCCCCCC
Q 041408 89 ITGITYDRESIEHWLFQGN--------NNAECPVTKQPL 119 (425)
Q Consensus 89 ~~g~t~~r~~I~~~~~~~~--------~~~~cP~~~~~l 119 (425)
.+||.|+= ||.... |.-+||.|+..-
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 46888763 665321 467899998653
No 427
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=1.5e+02 Score=27.22 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=37.3
Q ss_pred cCcCCccCCC--CceecCCCccccHHHHHHHHHcCC-----CCCCCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMK--DPVTAITGITYDRESIEHWLFQGN-----NNAECPVTKQPLPKDLDLT 126 (425)
Q Consensus 74 ~Cpi~~~~m~--dPV~~~~g~t~~r~~I~~~~~~~~-----~~~~cP~~~~~l~~~~~l~ 126 (425)
-|-+|+..+. |-+-+.|=|.|-=.|+.+|-.+-- ..+.||.|.+++-++..+.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence 4777776664 666778999999999999986421 2478999987653323333
No 428
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.42 E-value=8.6e+02 Score=26.92 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhh
Q 041408 162 IIKLIKDIWKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLS 241 (425)
Q Consensus 162 i~~lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~ 241 (425)
+..++..=+.-+-+.....++..+...+++.|+. ++..|..++.++-. ..-+..+|+.|..+.+ +..
T Consensus 396 L~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~------~~i~~rILhlLG~EgP--~a~ 462 (865)
T KOG1078|consen 396 LSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEF------TQIAVRILHLLGKEGP--KAP 462 (865)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccc------hHHHHHHHHHHhccCC--CCC
Q ss_pred hhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHH
Q 041408 242 AFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLM 321 (425)
Q Consensus 242 v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL 321 (425)
.-+ ..|..+...+-- .+.-+|..|+.+|.++. ....+....+.-.|.+.+.+. +.++|+.|.-+|
T Consensus 463 ~Ps--kyir~iyNRviL------En~ivRaaAv~alaKfg-----~~~~~l~~sI~vllkRc~~D~--DdevRdrAtf~l 527 (865)
T KOG1078|consen 463 NPS--KYIRFIYNRVIL------ENAIVRAAAVSALAKFG-----AQDVVLLPSILVLLKRCLNDS--DDEVRDRATFYL 527 (865)
T ss_pred Ccc--hhhHHHhhhhhh------hhhhhHHHHHHHHHHHh-----cCCCCccccHHHHHHHHhcCc--hHHHHHHHHHHH
Q ss_pred HHh
Q 041408 322 LDA 324 (425)
Q Consensus 322 ~~L 324 (425)
.++
T Consensus 528 ~~l 530 (865)
T KOG1078|consen 528 KNL 530 (865)
T ss_pred HHh
No 429
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=27.21 E-value=16 Score=20.50 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.2
Q ss_pred ccCcCCccCCCCce
Q 041408 73 FICPISLQIMKDPV 86 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV 86 (425)
|.|.+|...|.++.
T Consensus 1 ~~C~~C~~~f~s~~ 14 (25)
T PF12874_consen 1 FYCDICNKSFSSEN 14 (25)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCCcCCHH
Confidence 56888887777664
No 430
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=26.49 E-value=1.3e+02 Score=19.69 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhccccCChHHHHHHHHHH
Q 041408 294 PQIFQNIIRVLKQRVIAQQGINAALKLM 321 (425)
Q Consensus 294 ~g~i~~Lv~lL~~~~~~~~~~~~A~~aL 321 (425)
..+...+.+-|.+. ++.+|++|..+|
T Consensus 17 ~~v~~~i~~rl~D~--s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDS--SPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCC--ChHHHHHHHHHC
Confidence 35667777778888 899999998754
No 431
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.30 E-value=77 Score=22.64 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLPK 121 (425)
Q Consensus 109 ~~~cP~~~~~l~~ 121 (425)
+..||.|+.++.+
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 5789999998864
No 432
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=26.24 E-value=21 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..+...|.||.|.-.= .+.++.+|.. +.|...|-+|.+.|+.
T Consensus 18 ~~ldt~FnClfcnHek------~v~~~~Dk~~-------~iG~~sC~iC~esFqt 59 (109)
T KOG3214|consen 18 EPLDTQFNCLFCNHEK------SVSCTLDKKH-------NIGKASCRICEESFQT 59 (109)
T ss_pred cchheeeccCcccccc------ceeeeehhhc-------Ccceeeeeehhhhhcc
Confidence 3566789999998644 4566777743 2245789999888753
No 433
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.04 E-value=1.4e+02 Score=25.14 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=54.2
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcc---hHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKK---TTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~---~~e~Al~~L~~L~~ 368 (425)
.++..|-+-|..+ ++..+-.|+.+|-.+..+. .-...+.....+..|+.++.+..... +++.++..|.....
T Consensus 42 ea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHG--NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3567777778887 9999999999999888754 45666667788889999887653333 78888887776654
No 434
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.86 E-value=46 Score=34.14 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=30.1
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHHHHHc
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEHWLFQ 105 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~~~~~ 105 (425)
.....|.||..-..+ .+.+.|||.||..|+..|+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 445889999988875 556689999999999999975
No 435
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=25.64 E-value=68 Score=34.97 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=36.7
Q ss_pred CcccCcCCc--cCCCCceecCCCcc-----ccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISL--QIMKDPVTAITGIT-----YDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~--~~m~dPV~~~~g~t-----~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+.-.|-||. ..=-||.--||..+ .-|+|+-+|...++ ...|-.|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~-~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG-TKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC-Ccceeeecceee
Confidence 346788886 56667877677644 56899999999764 678999997754
No 436
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=25.46 E-value=55 Score=28.74 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCC
Q 041408 108 NNAECPVTKQPLPK 121 (425)
Q Consensus 108 ~~~~cP~~~~~l~~ 121 (425)
|.+.||.|+.|+.+
T Consensus 155 GRP~CPlCg~PldP 168 (177)
T TIGR03847 155 GRPPCPLCGRPIDP 168 (177)
T ss_pred CCCCCCCCCCCCCC
Confidence 36999999999975
No 437
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=25.23 E-value=47 Score=25.83 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=19.3
Q ss_pred eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 86 VTAITGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 86 V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
|++|.|+.|++..|..-+.. .||..-.|
T Consensus 10 VtIp~G~KYdK~wLl~~iq~-----~c~v~F~P 37 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS-----HCSVPFTP 37 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH-----HSSS----
T ss_pred EEecCCcccCHHHHHHHHHH-----HCCCCeee
Confidence 78899999999999998864 47654444
No 438
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=25.02 E-value=6.4e+02 Score=24.46 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=57.6
Q ss_pred chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC---chHHHHhhCchHHHHHHhhccC--CcchHHHHHHHHHHHh
Q 041408 293 KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR---NRMIMVESGAVFELIELELTAS--EKKTTELILGILFHLC 367 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~---n~~~iv~~G~v~~Lv~lL~~~~--~~~~~e~Al~~L~~L~ 367 (425)
..|.+..+++.+...+.+...+---+.++-++-.... -+..+.+.|.+..|+..+.++. +..+...+...|..|.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4588899999987664455566666777777766443 4566789999999999997652 2357788889999998
Q ss_pred CCH
Q 041408 368 SCA 370 (425)
Q Consensus 368 ~~~ 370 (425)
...
T Consensus 173 K~n 175 (303)
T PF12463_consen 173 KFN 175 (303)
T ss_pred CCC
Confidence 844
No 439
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=24.95 E-value=1.2e+02 Score=30.68 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=26.3
Q ss_pred CCCCccc-CcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFI-CPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~-Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.++.... ||-|..+.+.| -++.|+ ...||.|+..+..
T Consensus 8 ~~~~~~~~C~~Cd~l~~~~-~l~~g~----------------~a~CpRCg~~L~~ 45 (403)
T TIGR00155 8 HPAAKHILCSQCDMLVALP-RIESGQ----------------KAACPRCGTTLTV 45 (403)
T ss_pred CCCCCeeeCCCCCCccccc-CCCCCC----------------eeECCCCCCCCcC
Confidence 4445554 99999999888 334444 2579999999954
No 440
>PRK05978 hypothetical protein; Provisional
Probab=24.44 E-value=43 Score=28.75 Aligned_cols=12 Identities=8% Similarity=0.393 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 041408 110 AECPVTKQPLPK 121 (425)
Q Consensus 110 ~~cP~~~~~l~~ 121 (425)
..||.|+.++..
T Consensus 53 ~~C~~CG~~~~~ 64 (148)
T PRK05978 53 DHCAACGEDFTH 64 (148)
T ss_pred CCccccCCcccc
Confidence 567777766643
No 441
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=24.20 E-value=71 Score=34.45 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCCCCCCCccHHHHHHHH
Q 041408 66 DIEIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGN--NNAECPVTKQPLPKDLDLTPNHTLRRLIQ 136 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~~l~~~~~l~pn~~l~~~I~ 136 (425)
...+.-.+.|||++.-|.=|+-- .|+|-=|-.. ..|+..+. +...||+|.+.... +.++-+.-+-..+.
T Consensus 300 tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~-~~~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 300 TTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDA-LSYLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNILQ 371 (636)
T ss_pred eccceeEecCCcccceeecCCcccccccceecch-hhhHHhccCCCeeeCccCCccccc-cchhhhHHHHHHHh
Confidence 34566678999999999988854 6876544422 23333332 34679999887766 66666555544443
No 442
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=32 Score=32.56 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=32.6
Q ss_pred CcccCcCCccCCCCceec--C--CCccccHHHHHHHHHcCC--CCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTA--I--TGITYDRESIEHWLFQGN--NNAECPV 114 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~--~--~g~t~~r~~I~~~~~~~~--~~~~cP~ 114 (425)
..++|-+|++-+.|-=.. | .+|.||--|=.+.+++.+ +.-.||.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 348999999999986544 2 579999888888777543 3456776
No 443
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.12 E-value=8.2e+02 Score=27.10 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=101.7
Q ss_pred HHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC---C
Q 041408 160 LQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK---I 233 (425)
Q Consensus 160 ~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~---~ 233 (425)
..+.+....+. .+..+..+...+..+++.-. ......+.+|.+..+..+..++ +++.|...+..+. .
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~Ddqds----Vr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDS----VREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhh----HHHHHHHHHHHHHHhcC
Confidence 44556666652 23555556666666665332 2556678888888888665543 3666666555543 1
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
.++ .... ...+.++..... ++...+-........+...-.. ..+ ....+++...++++. ..+.
T Consensus 309 ~~~---d~~~---~~~~~l~~~~~d------~~~~v~~~~~~~~~~L~~~~~~--~~~-~~~~~~~~~~l~~~~--~~e~ 371 (759)
T KOG0211|consen 309 DDD---DVVK---SLTESLVQAVED------GSWRVSYMVADKFSELSSAVGP--SAT-RTQLVPPVSNLLKDE--EWEV 371 (759)
T ss_pred Cch---hhhh---hhhHHHHHHhcC------hhHHHHHHHhhhhhhHHHHhcc--ccC-cccchhhHHHHhcch--hhhh
Confidence 221 1111 466677777765 6777776666666666543222 111 123467777777765 4555
Q ss_pred HHHHHHHHHHhCC--CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHH
Q 041408 314 INAALKLMLDACP--SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHL 366 (425)
Q Consensus 314 ~~~A~~aL~~L~~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L 366 (425)
+.+++.=...++. +.+....+...-++|.+-.+..+. +..+....+.....+
T Consensus 372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-~~~vr~a~a~~~~~~ 425 (759)
T KOG0211|consen 372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-ALHVRSALASVITGL 425 (759)
T ss_pred hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-cchHHHHHhcccccc
Confidence 5555555555554 333444555555677777777664 555555444444444
No 444
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=24.06 E-value=29 Score=24.25 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.0
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
+++.||+|+.--+.-
T Consensus 3 ~Wi~CP~CgnKTR~k 17 (55)
T PF14205_consen 3 EWILCPICGNKTRLK 17 (55)
T ss_pred eEEECCCCCCcccee
Confidence 578999999655444
No 445
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.89 E-value=7.4e+02 Score=26.97 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 310 AQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.+..|-.++..|..+... +.....+++...++.|+..|.-..+..+...|+.+|..|.-
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 457888999999999874 67788889999999999999775567777788888877764
No 446
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.83 E-value=5.8e+02 Score=23.54 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCCh
Q 041408 316 AALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSP 395 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~ 395 (425)
.=...|..||.+..+...+-+.|....+.++.... +. .....-+|.+|=..-++... ..|-+.|..++.
T Consensus 142 ~Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~-~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~s~ 210 (226)
T PF14666_consen 142 GYFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLS-SR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSGSE 210 (226)
T ss_pred HHHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccC-ch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcCCH
Confidence 33567888999999999999999999999998764 22 22333355555332222221 133344666788
Q ss_pred HHHHHHHHHHHHHh
Q 041408 396 AADDRAILILSLIC 409 (425)
Q Consensus 396 ~~~e~a~~~L~~l~ 409 (425)
..+-.|...|..+.
T Consensus 211 ~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 211 SIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 447
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.68 E-value=26 Score=27.83 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHH
Q 041408 108 NNAECPVTKQPLPKDLDLTPNHTL 131 (425)
Q Consensus 108 ~~~~cP~~~~~l~~~~~l~pn~~l 131 (425)
|...||.|+.++.. .-+.-|.+|
T Consensus 48 G~t~CP~Cg~~~e~-~fvva~~aL 70 (115)
T COG1885 48 GSTSCPKCGEPFES-AFVVANTAL 70 (115)
T ss_pred ccccCCCCCCccce-eEEEeccee
Confidence 35679999998865 444444433
No 448
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.60 E-value=8.1e+02 Score=25.16 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=66.5
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
+.+..++.+... ..+.+..+.+..++-.+.....- =.+.++.++..|..-....+..+.+-.++.||+.
T Consensus 176 ~lv~~i~~iC~~-----Ts~~~di~~~L~vldaii~y~~i------P~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~ 244 (464)
T PF11864_consen 176 SLVDQICTICKS-----TSSEDDIEACLSVLDAIITYGDI------PSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLK 244 (464)
T ss_pred HHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHcCcC------ChHHHHHHHHHHhhHhcccccchhHHHHHHHHHc
Confidence 445555555443 13333345555555444332211 1133455555554221133667778888889987
Q ss_pred CCCchHHHHhhCchHHHHHHhhcc-----CCcchHHHHHHHHHHHhCCH--hhHHHHhhccc--cHHHHHHHHhcCChHH
Q 041408 327 SGRNRMIMVESGAVFELIELELTA-----SEKKTTELILGILFHLCSCA--DGRAQFLSHRA--AIAVVTKRIMQVSPAA 397 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~-----~~~~~~e~Al~~L~~L~~~~--e~r~~~~~~~g--~i~~Lv~ll~~~s~~~ 397 (425)
+..+.. +|..|.++|.+. .+..+...|+..|..+.-.. .+...+ ...- .++.|...+...+...
T Consensus 245 S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l-~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 245 SHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL-PFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred CccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee-cccHHHHHHHHHHHHhCCCCee
Confidence 654322 345677777322 13445566777777766533 222222 2222 4566666555444433
No 449
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=23.51 E-value=71 Score=22.45 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLP 120 (425)
Q Consensus 109 ~~~cP~~~~~l~ 120 (425)
.+.||.|+-|.-
T Consensus 14 ~~~Cp~cGipth 25 (55)
T PF13824_consen 14 NFECPDCGIPTH 25 (55)
T ss_pred CCcCCCCCCcCc
Confidence 478999998763
No 450
>PRK13908 putative recombination protein RecO; Provisional
Probab=23.51 E-value=2.7e+02 Score=25.10 Aligned_cols=63 Identities=16% Similarity=0.356 Sum_probs=41.0
Q ss_pred chhhccCChhHHHHHHHHhhhhccccCCCCCCCcccCcCCccCCCCceecC---------C--CccccHHHHHHHHHc
Q 041408 39 RSRTHKQKPQQQHIIILSLLFQMDDHQDIEIPEYFICPISLQIMKDPVTAI---------T--GITYDRESIEHWLFQ 105 (425)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPV~~~---------~--g~t~~r~~I~~~~~~ 105 (425)
..+.+.+.|-+--+...-.+-+.+.. +..++.|-+|.+...+.+.+. | |.+|++.-|++|++.
T Consensus 109 a~~~~kQnpKR~iie~Y~~LLefEGR----Lh~~~~Cf~Ce~~i~~~iaL~RaflpaH~~C~~~~~f~~~ki~~~f~~ 182 (204)
T PRK13908 109 AKKLEKQNPKRVIIESYAKLLEFEGR----LHKDFICFLCDEKIENEIALARAFLPAHPSCIKSKSFELEKIKEFFRT 182 (204)
T ss_pred HHHHHhcCcHhHHHHHHHHHHHhccc----cCCCCeEEecCCccccchHHHHhhcccChhhhcccccCHHHHHHHHHh
Confidence 44455566666666655555565543 778899999999988887542 1 344666666666654
No 451
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.36 E-value=51 Score=28.90 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCC
Q 041408 108 NNAECPVTKQPLPK 121 (425)
Q Consensus 108 ~~~~cP~~~~~l~~ 121 (425)
|.+.||.|+.|+.+
T Consensus 153 GRP~CPlCg~PlDP 166 (171)
T PF11290_consen 153 GRPPCPLCGEPLDP 166 (171)
T ss_pred CCCCCCCCCCCCCC
Confidence 46999999999865
No 452
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=15 Score=27.56 Aligned_cols=11 Identities=27% Similarity=0.621 Sum_probs=8.5
Q ss_pred ccCcCCccCCC
Q 041408 73 FICPISLQIMK 83 (425)
Q Consensus 73 ~~Cpi~~~~m~ 83 (425)
+.||+|.--|.
T Consensus 2 llCP~C~v~l~ 12 (88)
T COG3809 2 LLCPICGVELV 12 (88)
T ss_pred cccCcCCceee
Confidence 47999997773
No 453
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.12 E-value=17 Score=33.38 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=25.8
Q ss_pred CCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCC------CCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGN------NNAECPVTK 116 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~------~~~~cP~~~ 116 (425)
.+.+.||+|...|+--.+. .++.+.-+ -+.-.+.=+. ..-.||.|.
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiRiiag-Dld~~lkygninP~fY~VvvCP~C~ 69 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIRIIAG-DLDFFLKYGNINPYFYDVVVCPICY 69 (267)
T ss_pred hceeccCcccchhhhhheeccceeEecc-cccceeeccccCCceeEEEEcchhh
Confidence 4567899999999766554 34444332 2222222111 124699985
No 454
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.11 E-value=35 Score=23.90 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=19.3
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
.|.||.|++-+ .++.... +. ...||.|+..+.
T Consensus 2 ~~~CP~CG~~i----ev~~~~~------------Ge-iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEI----ELENPEL------------GE-LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEE----ecCCCcc------------CC-EEeCCCCCCEEE
Confidence 47899999854 3332210 11 247999987763
No 455
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=22.93 E-value=2.2e+02 Score=27.85 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCCchHHHHhhC--chHHHHHHhhccC--CcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 316 AALKLMLDACPSGRNRMIMVESG--AVFELIELELTAS--EKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G--~v~~Lv~lL~~~~--~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
.|+..|..+.........+...+ .+..|++++.-+. ...++..|+.+|..++........++.
T Consensus 241 lAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 241 LAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444555666777666 9999999997642 356888999999999886554444443
No 456
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=22.92 E-value=92 Score=21.94 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.6
Q ss_pred ccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 92 ITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 92 ~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.|||..|-+..+. ..||-|+-.|..
T Consensus 29 CTFC~~C~e~~l~-----~~CPNCgGelv~ 53 (57)
T PF06906_consen 29 CTFCADCAETMLN-----GVCPNCGGELVR 53 (57)
T ss_pred CcccHHHHHHHhc-----CcCcCCCCcccc
Confidence 4999999988873 479999987754
No 457
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.65 E-value=2.9e+02 Score=23.17 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.6
Q ss_pred CCCCCcccCcCCcc-CCCCceecCCCccccHHHHHHHHHc
Q 041408 67 IEIPEYFICPISLQ-IMKDPVTAITGITYDRESIEHWLFQ 105 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~-~m~dPV~~~~g~t~~r~~I~~~~~~ 105 (425)
..+.++-+|-||+. -|-|- |||. |..|-.+++.+
T Consensus 60 aGv~ddatC~IC~KTKFADG----~GH~-C~YCq~r~CAR 94 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADG----CGHN-CSYCQTRFCAR 94 (169)
T ss_pred cccCcCcchhhhhhcccccc----cCcc-cchhhhhHHHh
Confidence 57888899999984 45554 7774 33343444443
No 458
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.58 E-value=39 Score=35.07 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=26.4
Q ss_pred CCcccCcCCccCCCCceec-CCCccccHHHHHHHHHc------CC---CCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQ------GN---NNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~------~~---~~~~cP~~~~~l~~ 121 (425)
++-|+|..|+++-..==+. .=-..||-.|+.+.-.. ++ ..+.||.|..+|..
T Consensus 3 ~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~ 64 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV 64 (483)
T ss_pred ccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence 4456666666665321111 11124666666544321 11 13678998888754
No 459
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=22.37 E-value=7.9e+02 Score=24.53 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLM 321 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL 321 (425)
..+-.+..|++.+...-..-+. ... .+++|.|+..|.++ +..+...|+.++
T Consensus 320 ~~piLka~aik~~~~Fr~~l~~-~~l---~~~~~~l~~~L~~~--~~vv~tyAA~~i 370 (370)
T PF08506_consen 320 SHPILKADAIKFLYTFRNQLPK-EQL---LQIFPLLVNHLQSS--SYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHHHHHGGGS-H-HHH---HHHHHHHHHHTTSS---HHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhCCH-HHH---HHHHHHHHHHhCCC--CcchhhhhhhhC
Confidence 4566777777777666543221 111 36899999999988 888888888765
No 460
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=1.5e+03 Score=27.42 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHH----------hhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC-hHHHHhh
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCM----------AEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT-SEYMKLS 241 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i----------~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~-~~~~~~~ 241 (425)
....+|+..+|.-+..+....+.| +-...+|.++++++++..- .-+..++..+..|+.. ..+.+..
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl---~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGL---GTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCC---CcchhHHHHHHHHHHHhccccCcc
Confidence 445667777764433332211111 1135788888888665321 1244444555444421 1111222
Q ss_pred hhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHH
Q 041408 242 AFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLM 321 (425)
Q Consensus 242 v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL 321 (425)
.+ ..+..+...++. .|..+++.-+.+..+|+......+.. ..+..++.-+-.. .+.....+..++
T Consensus 1275 sg---Kll~al~~g~~d------RNesv~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k--~es~~siscati 1339 (1702)
T KOG0915|consen 1275 SG---KLLRALFPGAKD------RNESVRKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGK--DESLKSISCATI 1339 (1702)
T ss_pred hh---HHHHHHhhcccc------ccHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhcc--CCCccchhHHHH
Confidence 21 345555556664 78888888888888887665543321 2344444444333 233336677777
Q ss_pred HHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC-ChHHHHH
Q 041408 322 LDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV-SPAADDR 400 (425)
Q Consensus 322 ~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~~~e~ 400 (425)
.+++.+....-.= .+.+|=||+-+-....+...++..-.+...+...++++....... .+-.+.+...+. +-..+..
T Consensus 1340 s~Ian~s~e~Lkn-~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~e-iLn~iceni~nn~~w~lr~q 1417 (1702)
T KOG0915|consen 1340 SNIANYSQEMLKN-YASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLE-ILNLICENITNNESWKLRKQ 1417 (1702)
T ss_pred HHHHHhhHHHHHh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHH-HHHHHHHHhccchHHHHHHH
Confidence 7755533211111 133444555554433134455555566666666666665543322 222333333333 2355666
Q ss_pred HHHHHHHHhccC
Q 041408 401 AILILSLICKFS 412 (425)
Q Consensus 401 a~~~L~~l~~~~ 412 (425)
++.++..+|...
T Consensus 1418 ~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1418 AAKAIRVIAEGL 1429 (1702)
T ss_pred HHHHHHHHcccc
Confidence 777776666543
No 461
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=21.67 E-value=1.7e+02 Score=20.82 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHH
Q 041408 320 LMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILF 364 (425)
Q Consensus 320 aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~ 364 (425)
+|.-||....+|..+-+.|+.+.|=.+=....++.+.+..-.+..
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~ 45 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQ 45 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 366788888899998888887665554433335555554444333
No 462
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=21.63 E-value=80 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCcccCcCCccCCCCc-eecCCCccccHHHHHH
Q 041408 70 PEYFICPISLQIMKDP-VTAITGITYDRESIEH 101 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP-V~~~~g~t~~r~~I~~ 101 (425)
++-|.|-.|...+.+. .....|..||+.+..+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 4557888888888777 3556778888877654
No 463
>PHA02768 hypothetical protein; Provisional
Probab=21.26 E-value=1.2e+02 Score=21.34 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=19.6
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
|.||.|+..|... +.+..+.........|..|+..+.
T Consensus 6 y~C~~CGK~Fs~~-----------~~L~~H~r~H~k~~kc~~C~k~f~ 42 (55)
T PHA02768 6 YECPICGEIYIKR-----------KSMITHLRKHNTNLKLSNCKRISL 42 (55)
T ss_pred cCcchhCCeeccH-----------HHHHHHHHhcCCcccCCcccceec
Confidence 5788888877433 222223221100357888876554
No 464
>COG1773 Rubredoxin [Energy production and conversion]
Probab=21.16 E-value=49 Score=23.27 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=11.8
Q ss_pred CCCCcccCcCCcc
Q 041408 68 EIPEYFICPISLQ 80 (425)
Q Consensus 68 ~~p~~~~Cpi~~~ 80 (425)
++|++..||.|+-
T Consensus 32 dlPd~w~CP~Cg~ 44 (55)
T COG1773 32 DLPDDWVCPECGV 44 (55)
T ss_pred hCCCccCCCCCCC
Confidence 7999999999985
No 465
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.67 E-value=94 Score=24.98 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=29.3
Q ss_pred ccCcCCccCCCCceecC--------C---CccccHHHHHHHHHcCC------CCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAI--------T---GITYDRESIEHWLFQGN------NNAECPVTKQ 117 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~--------~---g~t~~r~~I~~~~~~~~------~~~~cP~~~~ 117 (425)
-+|-.|.+--.|+.+.. | .-.||..|+..++.+.- ..-.||.|+-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 35666666555655433 3 55699999988886421 2457999975
No 466
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=20.67 E-value=1.1e+02 Score=28.42 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=20.2
Q ss_pred CCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 90 TGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 90 ~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
||+.|.+..+........ .+.||.|+..+.+
T Consensus 122 C~~~~~~~~~~~~~~~~~-~p~C~~Cgg~lrP 152 (235)
T cd01408 122 CKHKYPGDWMREDIFNQE-VPKCPRCGGLVKP 152 (235)
T ss_pred CCCcCCHHHHHHHHhCCC-CccCCCCCCCccC
Confidence 677777765555543322 4789999877754
No 467
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.66 E-value=7.2e+02 Score=23.46 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=50.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
..+..+..+|.+ +....|.....+|..+-..-+.+... .+++|.+|+++|+.. .-..|+.+|.+..
T Consensus 188 ~~l~~Ll~lL~n------~~~w~~~~~L~iL~~ll~~~d~~~~~--~~dlispllrlL~t~-----~~~eAL~VLd~~v 253 (262)
T PF14225_consen 188 QILTFLLGLLEN------GPPWLRRKTLQILKVLLPHVDMRSPH--GADLISPLLRLLQTD-----LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhC------CcHHHHHHHHHHHHHHhccccCCCCc--chHHHHHHHHHhCCc-----cHHHHHHHHHHHH
Confidence 467788899987 88899999999999998766655443 346999999999876 4455777766543
No 468
>PRK00420 hypothetical protein; Validated
Probab=20.59 E-value=38 Score=27.64 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLP 120 (425)
Q Consensus 109 ~~~cP~~~~~l~ 120 (425)
...||.|+.++.
T Consensus 40 ~~~Cp~Cg~~~~ 51 (112)
T PRK00420 40 EVVCPVHGKVYI 51 (112)
T ss_pred ceECCCCCCeee
Confidence 467999987653
No 469
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=20.57 E-value=6.7e+02 Score=23.03 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
++..+...+..|-.++.....+... ++..|..+...+.. ...--+.+.+..+...++... +.+.
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~----~~~~~~~rLl~~lw~~~~r~f-------~~L~ 77 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL----ELRYVALRLLTLLWKANDRHF-------PFLQ 77 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch----hHHHHHHHHHHHHHHhCchHH-------HHHH
Confidence 4566777777777776543122111 13333333333221 112245566666665444322 2333
Q ss_pred HHHHH-----HccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHHh
Q 041408 251 SFTWV-----LALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 251 ~Lv~l-----L~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L 324 (425)
.++.. ..... +.....+.....+..+..+|...++ .+ ..+++.+..+| ++. ++.++..|+.+|..|
T Consensus 78 ~~L~~~~~r~~~~~~-~~~~~~~~~i~~a~s~~~ic~~~p~---~g--~~ll~~ls~~L~~~~--~~~~~alale~l~~L 149 (234)
T PF12530_consen 78 PLLLLLILRIPSSFS-SKDEFWECLISIAASIRDICCSRPD---HG--VDLLPLLSGCLNQSC--DEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHhhcccccC-CCcchHHHHHHHHHHHHHHHHhChh---hH--HHHHHHHHHHHhccc--cHHHHHHHHHHHHHH
Confidence 33333 11100 0013344444556788888887776 22 24788889999 666 888999999999999
Q ss_pred C
Q 041408 325 C 325 (425)
Q Consensus 325 ~ 325 (425)
|
T Consensus 150 c 150 (234)
T PF12530_consen 150 C 150 (234)
T ss_pred H
Confidence 9
No 470
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=20.55 E-value=34 Score=27.16 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=16.2
Q ss_pred cCcCCccCC--CCceec--CCCccccHHHHHHHHHcCC-CCCCCCCCCCCC
Q 041408 74 ICPISLQIM--KDPVTA--ITGITYDRESIEHWLFQGN-NNAECPVTKQPL 119 (425)
Q Consensus 74 ~Cpi~~~~m--~dPV~~--~~g~t~~r~~I~~~~~~~~-~~~~cP~~~~~l 119 (425)
.||+|...+ .|+... +.||+|.| |-..++.=.. +...||.|+...
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPR-CALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp -------------SSEEE-TTS-EEEB--SSS-SBS-SS-EEE-TTT--EE
T ss_pred cccccccccccCCcCEeECCCCCEEee-eeeeeeeeccCCeeEcCCCCCEE
Confidence 699999855 576544 68999999 5444432111 236799998654
No 471
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.55 E-value=6.2e+02 Score=22.60 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=47.0
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD 371 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e 371 (425)
-.+|.+++=|... ...-+--|...+..|... ...+..=+=.-.|++|-.-|.+. ++++...++.+|..|+...+
T Consensus 38 ~~Lpif~dGL~Et--~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRET--EHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhcc--CccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 3556666666555 444445555555555444 33332223345777777888876 89999999999999966443
No 472
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=20.42 E-value=54 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.4
Q ss_pred ccCcCCccCCCCce---ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPV---TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV---~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
+.||-|+.....-+ -.+.|....| ...||.|+..+..
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~------------~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRR------------RRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceee------------eeeccccCCcceE
Confidence 36999997663333 3345655443 3579999987754
No 473
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=1e+03 Score=25.91 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=29.7
Q ss_pred chhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh
Q 041408 244 EIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF 288 (425)
Q Consensus 244 ~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~ 288 (425)
++..++|.||+.|.. .+..+....+...|+..+...++..
T Consensus 356 En~eVLpqlvdalg~-----vqT~ds~~a~~dfL~~~S~sss~~~ 395 (896)
T KOG4337|consen 356 ENDEVLPQLVDALGG-----VQTADSITAADDFLFGISQSSSNNE 395 (896)
T ss_pred hhhhHHHHHHHHhcc-----ccchhhHHHHHHHHhccccccchhH
Confidence 455799999999986 4666777777788887777665544
No 474
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.14 E-value=31 Score=23.88 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 041408 111 ECPVTKQPLPK 121 (425)
Q Consensus 111 ~cP~~~~~l~~ 121 (425)
.||+|+.+|+.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988854
No 475
>PRK03922 hypothetical protein; Provisional
Probab=20.10 E-value=35 Score=27.46 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCccH
Q 041408 109 NAECPVTKQPLPKDLDLTPNH 129 (425)
Q Consensus 109 ~~~cP~~~~~l~~~~~l~pn~ 129 (425)
...||.|+.++.. .-+.-|.
T Consensus 49 ~~~cP~cge~~~~-afvvA~t 68 (113)
T PRK03922 49 LTICPKCGEPFDS-AFVVADT 68 (113)
T ss_pred cccCCCCCCcCCc-EEEEecc
Confidence 4679999888865 4444443
No 476
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=67 Score=30.81 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=32.8
Q ss_pred ccCcCCccCCC------CceecC--------CCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMK------DPVTAI--------TGITYDRESIEHWLFQGNNNAECPVTKQP 118 (425)
Q Consensus 73 ~~Cpi~~~~m~------dPV~~~--------~g~t~~r~~I~~~~~~~~~~~~cP~~~~~ 118 (425)
-.|.+|...+. -|-+.. |||++|..|+..-+.+. ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~--~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA--GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh--hhcCCcccce
Confidence 45667665554 355666 99999999999988765 3789999753
Done!