Query 041408
Match_columns 425
No_of_seqs 295 out of 2048
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 99.9 3.6E-27 1.2E-31 231.9 18.3 242 159-414 72-338 (354)
2 3nmw_A APC variant protein; AR 99.9 8E-27 2.7E-31 229.5 19.9 238 173-421 47-303 (354)
3 3nmz_A APC variant protein; pr 99.9 4.4E-26 1.5E-30 230.9 20.1 241 160-414 189-454 (458)
4 3nmz_A APC variant protein; pr 99.9 6.8E-26 2.3E-30 229.5 17.7 236 175-421 165-419 (458)
5 4db8_A Armadillo-repeat protei 99.9 6.5E-25 2.2E-29 204.9 19.7 236 161-411 13-252 (252)
6 4hxt_A De novo protein OR329; 99.9 1.8E-24 6E-29 201.0 22.5 239 161-414 3-245 (252)
7 1xm9_A Plakophilin 1; armadill 99.9 1.2E-24 4.2E-29 221.7 22.2 244 162-419 4-368 (457)
8 3l6x_A Catenin delta-1; cateni 99.9 3.1E-23 1.1E-27 214.8 25.3 250 157-419 45-392 (584)
9 3ul1_B Importin subunit alpha- 99.9 2.2E-23 7.5E-28 215.3 19.2 253 159-420 99-355 (510)
10 3tt9_A Plakophilin-2; cell adh 99.9 7.9E-24 2.7E-28 195.3 13.4 199 200-411 8-230 (233)
11 3now_A UNC-45 protein, SD10334 99.9 3.8E-23 1.3E-27 220.9 19.7 242 160-414 495-741 (810)
12 3tpo_A Importin subunit alpha- 99.9 8.3E-23 2.8E-27 211.9 20.8 252 159-420 118-374 (529)
13 3now_A UNC-45 protein, SD10334 99.9 1.8E-22 6.3E-27 215.7 23.7 241 159-413 420-697 (810)
14 3tpo_A Importin subunit alpha- 99.9 4.6E-22 1.6E-26 206.3 21.0 246 159-414 161-410 (529)
15 1xm9_A Plakophilin 1; armadill 99.9 5.2E-22 1.8E-26 202.3 19.4 251 159-420 43-416 (457)
16 3ul1_B Importin subunit alpha- 99.9 6E-22 2.1E-26 204.5 18.3 246 159-414 142-391 (510)
17 3tt9_A Plakophilin-2; cell adh 99.9 1E-21 3.6E-26 181.1 17.1 197 161-369 9-230 (233)
18 2f42_A STIP1 homology and U-bo 99.9 7.1E-23 2.4E-27 179.5 8.6 97 45-144 77-175 (179)
19 4db6_A Armadillo repeat protei 99.9 1.3E-21 4.5E-26 177.4 16.9 198 199-411 11-210 (210)
20 4db6_A Armadillo repeat protei 99.9 2.8E-21 9.4E-26 175.2 17.1 194 161-368 13-209 (210)
21 4b8j_A Importin subunit alpha- 99.9 1.6E-20 5.5E-25 194.1 22.7 239 160-413 117-361 (528)
22 3l6x_A Catenin delta-1; cateni 99.9 4.6E-21 1.6E-25 198.6 18.2 202 196-411 44-271 (584)
23 4b8j_A Importin subunit alpha- 99.9 1.2E-20 4.1E-25 195.1 21.3 243 159-414 73-319 (528)
24 1xqr_A HSPBP1 protein; armadil 99.9 5.4E-20 1.8E-24 176.3 22.3 225 173-411 55-288 (296)
25 2kr4_A Ubiquitin conjugation f 99.9 5.6E-22 1.9E-26 154.0 6.3 76 64-143 6-81 (85)
26 4hxt_A De novo protein OR329; 99.8 1.9E-20 6.5E-25 173.7 17.6 200 200-414 2-203 (252)
27 1wgm_A Ubiquitin conjugation f 99.8 1.5E-21 5.2E-26 155.4 8.0 77 65-145 15-92 (98)
28 2kre_A Ubiquitin conjugation f 99.8 1.5E-21 5.2E-26 156.0 7.3 75 65-143 22-96 (100)
29 1wa5_B Importin alpha subunit; 99.8 1.1E-19 3.7E-24 188.2 21.8 239 160-414 130-374 (530)
30 2jdq_A Importin alpha-1 subuni 99.8 2.8E-19 9.5E-24 180.1 23.7 241 160-414 64-309 (450)
31 4db8_A Armadillo-repeat protei 99.8 8E-20 2.7E-24 170.2 18.3 200 200-414 12-213 (252)
32 1jdh_A Beta-catenin; beta-cate 99.8 2.4E-19 8.2E-24 184.5 22.0 241 157-412 14-258 (529)
33 1wa5_B Importin alpha subunit; 99.8 2.8E-19 9.7E-24 185.0 21.2 240 160-414 87-332 (530)
34 2z6h_A Catenin beta-1, beta-ca 99.8 3.4E-19 1.1E-23 189.0 21.9 241 157-412 11-255 (644)
35 1jdh_A Beta-catenin; beta-cate 99.8 7.5E-19 2.6E-23 180.8 22.0 238 159-409 265-529 (529)
36 2jdq_A Importin alpha-1 subuni 99.8 8.1E-19 2.8E-23 176.7 20.4 238 160-412 107-349 (450)
37 2z6h_A Catenin beta-1, beta-ca 99.8 2.6E-18 8.9E-23 182.1 24.0 245 159-414 262-531 (644)
38 2z6g_A B-catenin; FULL-length, 99.8 1.9E-18 6.4E-23 187.0 22.0 245 159-414 398-667 (780)
39 1xqr_A HSPBP1 protein; armadil 99.8 1.2E-18 4.1E-23 167.0 17.1 181 221-412 57-240 (296)
40 2z6g_A B-catenin; FULL-length, 99.8 5.6E-18 1.9E-22 183.3 21.6 239 159-412 149-391 (780)
41 2c2l_A CHIP, carboxy terminus 99.8 4.1E-19 1.4E-23 169.0 8.8 92 50-144 184-277 (281)
42 1t1h_A Gspef-atpub14, armadill 99.8 3.6E-19 1.2E-23 136.0 6.3 75 66-143 2-76 (78)
43 2yu4_A E3 SUMO-protein ligase 99.7 9.8E-19 3.3E-23 138.4 5.8 76 68-144 3-85 (94)
44 3opb_A SWI5-dependent HO expre 99.7 7.9E-17 2.7E-21 169.6 16.9 207 192-411 449-684 (778)
45 3opb_A SWI5-dependent HO expre 99.7 5.2E-16 1.8E-20 163.4 20.9 246 159-410 456-728 (778)
46 3ztg_A E3 ubiquitin-protein li 99.7 2.1E-16 7.2E-21 124.5 7.9 78 66-144 7-85 (92)
47 3m62_A Ubiquitin conjugation f 99.6 7.2E-17 2.5E-21 171.6 4.9 77 63-143 882-959 (968)
48 2bay_A PRE-mRNA splicing facto 99.6 2.9E-16 1E-20 113.2 2.7 54 72-129 3-57 (61)
49 3fl2_A E3 ubiquitin-protein li 99.5 5.9E-15 2E-19 122.9 5.6 72 68-141 48-119 (124)
50 3htk_C E3 SUMO-protein ligase 99.5 7.9E-15 2.7E-19 134.4 4.0 71 69-141 178-251 (267)
51 1z6u_A NP95-like ring finger p 99.5 1.9E-14 6.6E-19 123.6 5.5 71 68-140 74-144 (150)
52 2y43_A E3 ubiquitin-protein li 99.4 3.8E-14 1.3E-18 113.1 4.1 71 69-143 19-90 (99)
53 2yur_A Retinoblastoma-binding 99.4 1.5E-13 5.2E-18 103.4 6.6 62 66-128 9-71 (74)
54 2ecw_A Tripartite motif-contai 99.4 4.9E-14 1.7E-18 108.9 2.5 72 62-134 9-83 (85)
55 2ckl_A Polycomb group ring fin 99.4 1.5E-13 5E-18 111.5 4.7 69 68-140 11-84 (108)
56 4ayc_A E3 ubiquitin-protein li 99.4 2.8E-13 9.6E-18 114.8 6.2 66 69-140 50-115 (138)
57 2egp_A Tripartite motif-contai 99.4 1.4E-14 4.9E-19 110.5 -1.9 66 67-133 7-76 (79)
58 3lrq_A E3 ubiquitin-protein li 99.4 2.1E-13 7.3E-18 108.9 4.7 72 69-143 19-91 (100)
59 2ecv_A Tripartite motif-contai 99.4 8.6E-14 2.9E-18 107.5 1.9 68 65-133 12-82 (85)
60 1jm7_A BRCA1, breast cancer ty 99.4 2.5E-13 8.6E-18 110.8 4.3 70 69-139 18-87 (112)
61 2djb_A Polycomb group ring fin 99.4 1.3E-12 4.5E-17 97.7 7.2 58 67-128 10-68 (72)
62 2csy_A Zinc finger protein 183 99.4 5.5E-13 1.9E-17 102.2 5.0 63 67-134 10-72 (81)
63 2ckl_B Ubiquitin ligase protei 99.3 3.7E-13 1.3E-17 117.7 4.4 72 68-141 50-122 (165)
64 3hct_A TNF receptor-associated 99.3 5E-13 1.7E-17 110.1 5.0 72 67-141 13-84 (118)
65 1jm7_B BARD1, BRCA1-associated 99.3 2.4E-13 8.3E-18 111.8 2.3 68 69-142 19-87 (117)
66 2ecy_A TNF receptor-associated 99.3 1.5E-12 5.2E-17 95.6 6.0 52 68-121 11-62 (66)
67 3grl_A General vesicular trans 99.3 2.9E-11 1E-15 124.5 17.4 242 157-413 18-295 (651)
68 3l11_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 110.1 2.2 70 68-139 11-86 (115)
69 2ysl_A Tripartite motif-contai 99.3 2.3E-12 8E-17 96.5 6.1 55 67-121 15-69 (73)
70 3grl_A General vesicular trans 99.3 8.8E-11 3E-15 120.9 17.9 245 159-414 59-346 (651)
71 2ysj_A Tripartite motif-contai 99.3 5.6E-12 1.9E-16 91.6 6.3 48 68-115 16-63 (63)
72 1rmd_A RAG1; V(D)J recombinati 99.2 2.1E-12 7.2E-17 106.0 3.3 68 68-138 19-87 (116)
73 3hcs_A TNF receptor-associated 99.2 5.1E-12 1.8E-16 110.9 4.4 69 68-139 14-82 (170)
74 3knv_A TNF receptor-associated 99.2 1.7E-12 5.9E-17 110.1 0.4 69 68-138 27-103 (141)
75 1g25_A CDK-activating kinase a 99.2 8.6E-12 3E-16 91.2 3.9 55 71-128 2-61 (65)
76 2ct2_A Tripartite motif protei 99.2 3.2E-11 1.1E-15 93.6 7.0 56 66-121 9-68 (88)
77 3ng2_A RNF4, snurf, ring finge 99.2 1.5E-11 5.3E-16 91.4 3.9 58 67-128 5-69 (71)
78 2ecj_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 85.7 5.2 49 67-115 10-58 (58)
79 2d8t_A Dactylidin, ring finger 99.1 2.9E-11 1E-15 90.0 3.9 51 68-121 11-61 (71)
80 3ltm_A Alpha-REP4; protein eng 99.1 4.6E-09 1.6E-13 94.6 19.1 188 159-414 18-207 (211)
81 3ltj_A Alpharep-4; protein eng 99.1 8.5E-09 2.9E-13 92.0 20.5 187 155-409 9-197 (201)
82 2ea6_A Ring finger protein 4; 99.1 8.6E-11 3E-15 86.7 4.3 53 66-121 9-68 (69)
83 1e4u_A Transcriptional repress 99.0 1.8E-10 6.2E-15 87.1 5.6 54 66-121 5-62 (78)
84 2xeu_A Ring finger protein 4; 99.0 6.1E-11 2.1E-15 86.1 2.5 54 71-128 2-62 (64)
85 2ect_A Ring finger protein 126 99.0 2.6E-10 9E-15 86.4 5.4 58 67-128 10-70 (78)
86 1chc_A Equine herpes virus-1 r 98.9 8.3E-10 2.8E-14 81.2 4.8 48 71-121 4-52 (68)
87 1oyz_A Hypothetical protein YI 98.9 8.8E-08 3E-12 90.0 19.0 193 162-409 25-220 (280)
88 2kiz_A E3 ubiquitin-protein li 98.9 3E-09 1E-13 78.4 6.6 53 66-121 8-63 (69)
89 2ecm_A Ring finger and CHY zin 98.9 1.3E-09 4.4E-14 76.5 4.3 47 71-120 4-54 (55)
90 2ep4_A Ring finger protein 24; 98.9 3E-09 1E-13 79.5 6.0 52 67-121 10-64 (74)
91 4ap4_A E3 ubiquitin ligase RNF 98.9 6.9E-10 2.3E-14 92.8 2.5 54 70-127 5-65 (133)
92 1bor_A Transcription factor PM 98.8 5.9E-10 2E-14 78.7 1.6 46 70-121 4-49 (56)
93 2ecn_A Ring finger protein 141 98.8 5.2E-10 1.8E-14 82.8 1.1 50 68-121 11-60 (70)
94 1iym_A EL5; ring-H2 finger, ub 98.8 2.1E-09 7.2E-14 75.4 3.8 48 69-119 2-53 (55)
95 2l0b_A E3 ubiquitin-protein li 98.8 2.4E-09 8.2E-14 83.6 4.3 51 68-121 36-89 (91)
96 3ltm_A Alpha-REP4; protein eng 98.8 1.9E-07 6.4E-12 83.9 16.6 156 198-410 17-172 (211)
97 1x4j_A Ring finger protein 38; 98.8 3.5E-09 1.2E-13 79.5 3.4 50 69-121 20-72 (75)
98 3ltj_A Alpharep-4; protein eng 98.7 3.1E-07 1.1E-11 81.7 16.1 154 199-409 13-166 (201)
99 1v87_A Deltex protein 2; ring- 98.7 1.2E-08 4E-13 83.1 5.5 52 70-121 23-94 (114)
100 4gmo_A Putative uncharacterize 98.7 1.4E-07 4.9E-12 100.3 14.5 194 202-409 36-257 (684)
101 4ic3_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 78.5 1.8 45 70-121 22-67 (74)
102 4gmo_A Putative uncharacterize 98.7 4.2E-08 1.4E-12 104.4 9.4 157 248-414 35-218 (684)
103 2y1n_A E3 ubiquitin-protein li 98.7 1.6E-08 5.6E-13 98.5 5.3 49 71-121 331-379 (389)
104 4fdd_A Transportin-1; heat rep 98.6 6.8E-07 2.3E-11 97.3 15.9 236 163-413 218-474 (852)
105 4ap4_A E3 ubiquitin ligase RNF 98.6 1.5E-08 5E-13 84.6 1.7 56 69-128 69-131 (133)
106 2ecg_A Baculoviral IAP repeat- 98.5 2.8E-08 9.6E-13 74.5 2.9 45 70-121 23-68 (75)
107 2vje_A E3 ubiquitin-protein li 98.5 5.9E-08 2E-12 70.3 4.3 49 69-120 5-56 (64)
108 1oyz_A Hypothetical protein YI 98.5 1.4E-06 4.6E-11 81.8 14.6 166 198-409 21-187 (280)
109 1wim_A KIAA0161 protein; ring 98.5 1.9E-08 6.6E-13 78.9 1.4 69 70-140 3-83 (94)
110 2ecl_A Ring-box protein 2; RNF 98.5 9E-08 3.1E-12 72.8 3.8 48 71-121 14-76 (81)
111 2vje_B MDM4 protein; proto-onc 98.4 1.2E-07 4.1E-12 68.4 3.8 46 72-120 7-55 (63)
112 4fdd_A Transportin-1; heat rep 98.3 3E-05 1E-09 84.3 20.8 234 161-413 129-391 (852)
113 3dpl_R Ring-box protein 1; ubi 98.3 6.5E-07 2.2E-11 71.6 4.7 46 72-120 37-100 (106)
114 2yho_A E3 ubiquitin-protein li 98.2 2.1E-07 7.2E-12 70.4 1.3 44 71-121 17-61 (79)
115 2vgl_B AP-2 complex subunit be 98.2 4.1E-05 1.4E-09 79.8 19.0 222 161-414 50-315 (591)
116 2d8s_A Cellular modulator of i 98.2 1.5E-06 5.3E-11 65.6 5.7 59 68-127 11-76 (80)
117 1b3u_A Protein (protein phosph 98.2 1.7E-05 5.9E-10 81.6 15.5 225 161-411 164-393 (588)
118 3t6p_A Baculoviral IAP repeat- 98.2 2.8E-07 9.5E-12 89.2 1.2 45 70-121 293-338 (345)
119 2ea5_A Cell growth regulator w 98.2 1.9E-06 6.6E-11 63.0 5.3 46 69-121 12-58 (68)
120 1te4_A Conserved protein MTH18 98.1 1.4E-06 4.9E-11 72.2 3.8 120 199-365 11-130 (131)
121 1b3u_A Protein (protein phosph 98.1 9.5E-05 3.2E-09 76.0 18.0 214 172-414 101-314 (588)
122 1w63_A Adapter-related protein 98.1 9.5E-05 3.3E-09 77.5 18.2 231 164-423 146-391 (618)
123 2vgl_B AP-2 complex subunit be 98.0 2.1E-05 7E-10 82.1 10.7 183 162-368 123-311 (591)
124 3b2a_A TON_1937, putative unch 98.0 6.4E-05 2.2E-09 67.6 11.8 219 159-404 32-255 (265)
125 2qk2_A LP04448P; mini spindles 97.9 0.00011 3.7E-09 67.3 13.2 178 165-368 20-205 (242)
126 1ibr_B P95, importin beta-1 su 97.9 0.00019 6.5E-09 71.3 15.9 236 161-412 129-397 (462)
127 2qk2_A LP04448P; mini spindles 97.9 4.3E-05 1.5E-09 70.0 10.2 184 205-414 20-209 (242)
128 1te4_A Conserved protein MTH18 97.9 1.6E-06 5.4E-11 71.9 0.0 119 247-407 12-130 (131)
129 1qgr_A Protein (importin beta 97.9 0.0003 1E-08 76.0 17.0 225 172-411 231-480 (876)
130 4a0k_B E3 ubiquitin-protein li 97.8 2.4E-06 8.4E-11 69.2 0.0 45 73-120 49-111 (117)
131 1ibr_B P95, importin beta-1 su 97.7 0.00021 7.2E-09 71.0 12.6 222 172-411 188-438 (462)
132 3b2a_A TON_1937, putative unch 97.7 0.00027 9.3E-09 63.6 11.7 186 200-412 33-220 (265)
133 2qk1_A Protein STU2; STU2P, XM 97.7 0.00029 1E-08 65.1 12.5 181 172-368 30-220 (249)
134 2bpt_A Importin beta-1 subunit 97.7 0.00045 1.6E-08 74.4 15.5 239 161-413 455-714 (861)
135 3dad_A FH1/FH2 domain-containi 97.7 0.0018 6.1E-08 61.6 17.2 176 161-349 119-316 (339)
136 2bpt_A Importin beta-1 subunit 97.6 0.0011 3.8E-08 71.4 17.2 222 172-411 238-483 (861)
137 3dad_A FH1/FH2 domain-containi 97.6 0.0012 4E-08 62.9 14.6 147 265-414 130-290 (339)
138 2qk1_A Protein STU2; STU2P, XM 97.5 0.00044 1.5E-08 63.8 10.8 180 220-414 32-224 (249)
139 1w63_A Adapter-related protein 97.5 0.0015 5.1E-08 68.4 16.1 200 172-412 48-265 (618)
140 1u6g_C TIP120 protein, CAND1; 97.5 0.00096 3.3E-08 75.3 15.1 229 162-414 50-288 (1230)
141 1u6g_C TIP120 protein, CAND1; 97.4 0.00045 1.5E-08 78.0 10.5 229 160-411 6-244 (1230)
142 1qgr_A Protein (importin beta 97.3 0.0096 3.3E-07 64.1 19.1 234 162-413 130-398 (876)
143 2db0_A 253AA long hypothetical 97.1 0.12 4.3E-06 44.7 20.8 214 159-410 31-246 (253)
144 2vgl_A Adaptor protein complex 97.0 0.01 3.4E-07 62.2 15.3 228 171-422 161-409 (621)
145 2db0_A 253AA long hypothetical 97.0 0.015 5.3E-07 50.3 13.5 190 200-422 32-222 (253)
146 1ho8_A Vacuolar ATP synthase s 97.0 0.033 1.1E-06 55.5 17.9 229 173-411 183-477 (480)
147 1vyx_A ORF K3, K3RING; zinc-bi 96.9 0.00072 2.5E-08 47.8 3.9 49 71-120 5-58 (60)
148 2ct0_A Non-SMC element 1 homol 96.9 0.00095 3.2E-08 49.2 4.7 48 73-121 16-64 (74)
149 3vk6_A E3 ubiquitin-protein li 96.8 0.00098 3.3E-08 51.4 4.1 46 74-121 3-49 (101)
150 2fv2_A RCD1 required for cell 96.7 0.064 2.2E-06 48.9 15.8 238 160-408 3-266 (268)
151 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.00092 3.1E-08 63.4 3.1 78 43-120 269-372 (381)
152 2vgl_A Adaptor protein complex 96.5 0.032 1.1E-06 58.2 14.3 162 172-368 52-216 (621)
153 3i2d_A E3 SUMO-protein ligase 96.0 0.0053 1.8E-07 59.0 4.7 64 72-137 249-315 (371)
154 4ady_A RPN2, 26S proteasome re 95.7 0.28 9.5E-06 53.2 16.8 103 296-414 578-680 (963)
155 2iw3_A Elongation factor 3A; a 95.6 0.43 1.5E-05 52.1 18.2 231 162-420 56-289 (986)
156 3tjz_B Coatomer subunit gamma; 95.6 0.1 3.5E-06 50.4 11.9 238 126-414 79-320 (355)
157 3tjz_B Coatomer subunit gamma; 95.6 0.4 1.4E-05 46.2 16.0 138 201-369 69-206 (355)
158 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0057 2E-07 47.8 2.4 34 71-104 2-38 (101)
159 4fo9_A E3 SUMO-protein ligase 95.3 0.015 5.2E-07 55.7 5.0 66 70-137 213-281 (360)
160 2iw3_A Elongation factor 3A; a 95.3 2.1 7.3E-05 46.7 22.2 219 163-408 98-322 (986)
161 1ho8_A Vacuolar ATP synthase s 95.2 2.8 9.6E-05 41.7 21.2 105 266-370 181-303 (480)
162 4ffb_C Protein STU2; tubulin f 94.9 0.35 1.2E-05 44.6 13.0 182 165-368 14-212 (278)
163 3ebb_A Phospholipase A2-activa 94.6 1.2 4E-05 41.9 15.9 157 173-337 117-274 (304)
164 4ady_A RPN2, 26S proteasome re 94.3 0.63 2.2E-05 50.4 14.8 141 248-419 508-649 (963)
165 2fv2_A RCD1 required for cell 93.9 0.96 3.3E-05 41.2 12.9 153 174-336 72-234 (268)
166 3ebb_A Phospholipase A2-activa 93.8 1.2 4E-05 41.9 14.1 188 201-403 104-299 (304)
167 3nw0_A Non-structural maintena 92.4 0.13 4.5E-06 46.7 5.0 49 72-121 180-229 (238)
168 3u0r_A Apoptosis inhibitor 5; 92.1 2.5 8.5E-05 42.1 13.8 120 265-406 40-159 (507)
169 2of3_A ZYG-9; multifunctional 91.9 1.8 6.2E-05 39.8 12.0 101 247-368 132-236 (266)
170 4hat_C Exportin-1; heat repeat 91.2 1 3.5E-05 49.7 11.4 143 265-414 465-622 (1023)
171 2f31_A Diaphanous protein homo 89.8 3.3 0.00011 37.1 11.7 125 267-393 68-210 (233)
172 3c2g_A SYS-1 protein; beta-cat 89.3 9.4 0.00032 36.4 14.3 135 221-366 260-401 (619)
173 1wa5_C Importin alpha RE-expor 88.6 17 0.00057 39.5 18.4 179 218-410 472-670 (960)
174 4ffb_C Protein STU2; tubulin f 88.2 7.1 0.00024 35.5 13.1 150 248-413 56-215 (278)
175 3oc3_A Helicase MOT1, MOT1; re 87.3 1.2 3.9E-05 45.4 7.2 215 164-409 178-403 (800)
176 2of3_A ZYG-9; multifunctional 86.5 5.9 0.0002 36.3 11.1 136 265-414 99-240 (266)
177 3eg5_B Protein diaphanous homo 85.9 18 0.00063 34.8 15.0 147 194-350 104-276 (383)
178 2f31_A Diaphanous protein homo 85.9 2.3 7.8E-05 38.2 8.0 77 337-413 42-128 (233)
179 2x1g_F Cadmus; transport prote 84.7 11 0.00037 41.0 14.2 217 173-410 479-722 (971)
180 2bnx_A Diaphanous protein homo 84.6 6.8 0.00023 38.0 11.2 123 267-393 72-214 (386)
181 1wa5_C Importin alpha RE-expor 84.2 17 0.00058 39.4 15.5 182 171-367 471-669 (960)
182 3eg5_B Protein diaphanous homo 84.2 3.6 0.00012 40.0 9.0 81 332-413 104-194 (383)
183 2kkx_A Uncharacterized protein 82.9 2.5 8.6E-05 32.3 5.6 67 52-121 7-79 (102)
184 2ko5_A Ring finger protein Z; 82.8 0.66 2.3E-05 35.1 2.4 49 69-121 25-73 (99)
185 1upk_A MO25 protein; transfera 81.1 37 0.0013 32.0 15.6 184 173-370 93-285 (341)
186 2x19_B Importin-13; nuclear tr 80.6 17 0.00058 39.2 13.7 156 174-348 465-622 (963)
187 2x1g_F Cadmus; transport prote 80.5 12 0.00041 40.6 12.5 154 219-390 479-637 (971)
188 3mjh_B Early endosome antigen 79.5 0.39 1.3E-05 29.3 0.1 17 72-88 5-21 (34)
189 1upk_A MO25 protein; transfera 78.3 36 0.0012 32.1 13.2 200 196-411 74-284 (341)
190 3qml_C Protein SLS1, nucleotid 77.4 31 0.0011 32.1 12.2 137 221-368 45-189 (315)
191 1weo_A Cellulose synthase, cat 76.8 4.4 0.00015 30.2 5.1 47 72-120 16-69 (93)
192 2bnx_A Diaphanous protein homo 73.6 11 0.00037 36.6 8.6 77 337-413 46-132 (386)
193 2x19_B Importin-13; nuclear tr 72.6 27 0.00091 37.7 12.5 134 265-413 461-602 (963)
194 2jvx_A NF-kappa-B essential mo 72.3 0.98 3.4E-05 26.2 0.5 16 70-85 1-16 (28)
195 2jne_A Hypothetical protein YF 72.1 0.18 6E-06 38.4 -3.5 40 73-120 33-72 (101)
196 3c2g_A SYS-1 protein; beta-cat 71.7 36 0.0012 32.6 11.1 116 275-393 264-379 (619)
197 3pwf_A Rubrerythrin; non heme 71.3 7.2 0.00025 33.1 5.9 30 68-119 134-163 (170)
198 3m1i_C Exportin-1; heat repeat 71.0 1.2E+02 0.0042 32.9 18.8 230 156-411 12-264 (1049)
199 3l9t_A Putative uncharacterize 70.9 20 0.00069 32.1 9.0 139 247-414 71-211 (240)
200 4hat_C Exportin-1; heat repeat 69.7 20 0.00068 39.4 10.6 143 173-328 468-620 (1023)
201 3u0r_A Apoptosis inhibitor 5; 67.7 1E+02 0.0035 30.6 16.1 118 173-323 43-160 (507)
202 3m1i_C Exportin-1; heat repeat 67.3 33 0.0011 37.6 11.8 144 265-413 465-621 (1049)
203 1lsh_A Lipovitellin (LV-1N, LV 64.2 58 0.002 35.8 13.0 143 200-371 436-579 (1056)
204 2bay_A PRE-mRNA splicing facto 62.4 1.9 6.4E-05 29.9 0.4 44 109-158 3-49 (61)
205 3ldz_A STAM-1, signal transduc 62.4 41 0.0014 27.2 8.7 72 247-326 42-114 (140)
206 3oc3_A Helicase MOT1, MOT1; re 61.0 11 0.00039 38.3 5.8 133 200-364 299-432 (800)
207 2kre_A Ubiquitin conjugation f 58.6 5.7 0.00019 30.5 2.6 34 72-107 63-96 (100)
208 6rxn_A Rubredoxin; electron tr 56.5 3.5 0.00012 26.9 0.9 14 68-81 26-39 (46)
209 1x5b_A Signal transducing adap 54.4 68 0.0023 26.7 8.9 72 247-325 52-124 (163)
210 1e8j_A Rubredoxin; iron-sulfur 51.8 5.4 0.00019 26.7 1.2 14 68-81 32-45 (52)
211 2xqn_T Testin, TESS; metal-bin 51.5 9.7 0.00033 30.1 3.0 47 70-121 28-75 (126)
212 1m3v_A FLIN4, fusion of the LI 50.9 11 0.00037 29.8 3.2 49 70-121 30-81 (122)
213 4rxn_A Rubredoxin; electron tr 50.8 4.9 0.00017 27.2 0.9 14 68-81 32-45 (54)
214 1mhq_A ADP-ribosylation factor 50.2 81 0.0028 25.8 8.6 74 247-326 38-116 (148)
215 2jrp_A Putative cytoplasmic pr 49.7 1.3 4.3E-05 32.8 -2.3 40 73-120 3-42 (81)
216 1lsh_A Lipovitellin (LV-1N, LV 48.8 2.3E+02 0.0078 31.1 14.4 122 172-328 454-578 (1056)
217 1wgm_A Ubiquitin conjugation f 48.0 9.3 0.00032 29.1 2.2 34 72-107 57-90 (98)
218 3g2s_A C-terminal fragment of 47.4 1.1E+02 0.0038 25.0 9.0 74 247-326 48-126 (149)
219 1yk4_A Rubredoxin, RD; electro 46.5 6.3 0.00021 26.4 0.9 14 68-81 31-44 (52)
220 2kn9_A Rubredoxin; metalloprot 45.9 7.1 0.00024 28.7 1.2 19 68-86 56-74 (81)
221 3vhs_A ATPase wrnip1; zinc fin 45.9 4.7 0.00016 22.4 0.1 10 73-82 7-16 (29)
222 1juq_A ADP-ribosylation factor 45.9 98 0.0033 25.9 8.6 74 247-326 50-128 (171)
223 2v3b_B Rubredoxin 2, rubredoxi 45.6 6.5 0.00022 26.7 0.9 15 68-82 32-46 (55)
224 3ldz_A STAM-1, signal transduc 43.8 69 0.0023 25.9 7.1 68 340-409 44-113 (140)
225 2xjy_A Rhombotin-2; oncoprotei 43.1 13 0.00045 29.5 2.6 49 70-121 27-78 (131)
226 1yuz_A Nigerythrin; rubrythrin 43.0 28 0.00095 30.3 4.8 13 70-82 169-181 (202)
227 3qml_C Protein SLS1, nucleotid 42.7 1.8E+02 0.0063 26.9 10.4 135 269-410 44-189 (315)
228 1dx8_A Rubredoxin; electron tr 42.0 7.9 0.00027 27.7 0.9 19 68-86 36-54 (70)
229 3zyq_A Hepatocyte growth facto 40.3 1.1E+02 0.0037 26.9 8.4 73 247-326 45-118 (226)
230 1lko_A Rubrerythrin all-iron(I 39.3 12 0.00042 32.3 1.9 11 72-82 155-165 (191)
231 1dvp_A HRS, hepatocyte growth 38.8 1.2E+02 0.0042 26.3 8.5 72 247-325 42-114 (220)
232 1s24_A Rubredoxin 2; electron 38.8 9.8 0.00034 28.4 1.0 16 68-83 64-79 (87)
233 1x5b_A Signal transducing adap 38.0 46 0.0016 27.8 5.3 72 295-368 52-125 (163)
234 1t1h_A Gspef-atpub14, armadill 37.6 22 0.00077 25.1 2.9 33 72-106 43-75 (78)
235 2eps_A POZ-, at HOOK-, and zin 37.1 73 0.0025 20.2 5.3 41 69-120 9-52 (54)
236 2jtn_A LIM domain-binding prot 37.1 28 0.00097 29.4 3.9 47 70-121 85-131 (182)
237 2kr4_A Ubiquitin conjugation f 36.8 14 0.00046 27.2 1.5 33 72-106 48-80 (85)
238 1juq_A ADP-ribosylation factor 36.4 1.5E+02 0.005 24.8 8.2 73 339-413 51-131 (171)
239 3zyq_A Hepatocyte growth facto 36.1 40 0.0014 29.8 4.9 72 295-368 45-118 (226)
240 2rgt_A Fusion of LIM/homeobox 36.0 40 0.0014 28.1 4.6 47 70-121 31-77 (169)
241 3g2s_A C-terminal fragment of 35.0 1.5E+02 0.0053 24.1 7.9 73 339-413 49-129 (149)
242 3ibv_A Exportin-T; karyopherin 34.1 1.5E+02 0.0053 32.1 10.0 99 310-414 456-570 (980)
243 1lrv_A LRV, leucine-rich repea 33.5 4.7 0.00016 36.4 -1.8 12 132-143 41-52 (244)
244 3uk3_C Zinc finger protein 217 33.4 16 0.00053 23.6 1.3 41 72-121 4-44 (57)
245 1rut_X Flinc4, fusion protein 33.0 9.3 0.00032 32.8 0.1 49 70-121 30-81 (188)
246 3l9t_A Putative uncharacterize 33.0 2.6E+02 0.009 24.8 9.8 126 220-377 87-217 (240)
247 3gjx_A Exportin-1; transport, 32.6 2.8E+02 0.0097 30.5 11.8 101 265-368 491-595 (1073)
248 3gs3_A Symplekin, LD45768P; he 30.7 1.3E+02 0.0044 27.1 7.3 107 247-367 53-172 (257)
249 2cs3_A Protein C14ORF4, MY039 30.3 27 0.00092 25.5 2.1 45 70-114 13-63 (93)
250 1mhq_A ADP-ribosylation factor 29.7 1.4E+02 0.0047 24.3 6.8 71 339-411 39-117 (148)
251 1iml_A CRIP, cysteine rich int 29.4 36 0.0012 23.9 2.8 46 70-120 25-72 (76)
252 3gs3_A Symplekin, LD45768P; he 29.3 2.3E+02 0.0077 25.4 8.7 128 268-408 30-171 (257)
253 1dvp_A HRS, hepatocyte growth 28.9 61 0.0021 28.4 4.8 72 295-368 42-115 (220)
254 4gzn_C ZFP-57, zinc finger pro 28.9 19 0.00065 24.4 1.1 42 71-121 3-44 (60)
255 3o2t_A Symplekin; heat repeat, 27.8 2E+02 0.0067 27.6 8.4 64 247-323 63-126 (386)
256 2cup_A Skeletal muscle LIM-pro 27.7 20 0.00069 26.9 1.2 47 70-121 31-78 (101)
257 2o35_A Hypothetical protein DU 27.5 25 0.00085 26.7 1.6 13 93-105 42-54 (105)
258 2d8x_A Protein pinch; LIM doma 27.0 49 0.0017 22.7 3.1 35 70-104 29-64 (70)
259 3ibv_A Exportin-T; karyopherin 26.9 1.6E+02 0.0056 32.0 8.6 99 265-368 455-566 (980)
260 3fyb_A Protein of unknown func 26.8 26 0.00089 26.6 1.6 12 94-105 42-53 (104)
261 2eq4_A Zinc finger protein 224 26.3 1E+02 0.0035 18.3 4.3 14 71-84 11-24 (46)
262 2epr_A POZ-, at HOOK-, and zin 26.2 85 0.0029 19.1 4.0 39 68-117 8-48 (48)
263 2epq_A POZ-, at HOOK-, and zin 26.0 30 0.001 20.9 1.6 35 71-116 9-45 (45)
264 2adr_A ADR1; transcription reg 26.0 45 0.0015 21.5 2.6 39 72-121 2-42 (60)
265 2dar_A PDZ and LIM domain prot 25.4 56 0.0019 23.8 3.3 24 74-97 27-50 (90)
266 1wig_A KIAA1808 protein; LIM d 25.3 34 0.0012 24.0 2.0 35 70-104 29-65 (73)
267 2f42_A STIP1 homology and U-bo 25.1 28 0.00095 29.7 1.7 32 74-107 143-174 (179)
268 2eoq_A Zinc finger protein 224 25.0 1E+02 0.0036 18.3 4.2 14 71-84 11-24 (46)
269 2lv2_A Insulinoma-associated p 25.0 34 0.0012 25.0 2.0 41 70-121 26-68 (85)
270 2d8z_A Four and A half LIM dom 25.0 58 0.002 22.3 3.2 34 70-103 29-63 (70)
271 2ytn_A Zinc finger protein 347 24.7 96 0.0033 18.5 4.0 15 71-85 11-25 (46)
272 2ytr_A Zinc finger protein 347 24.5 1.1E+02 0.0037 18.2 4.2 15 71-85 11-25 (46)
273 1x61_A Thyroid receptor intera 24.5 1E+02 0.0036 21.0 4.5 36 70-105 31-67 (72)
274 2ytm_A Zinc finger protein 28 24.2 65 0.0022 19.4 3.0 15 71-85 11-25 (46)
275 2eop_A Zinc finger protein 268 24.2 1.1E+02 0.0037 18.2 4.2 15 71-85 11-25 (46)
276 2ytt_A Zinc finger protein 473 24.1 64 0.0022 19.4 3.0 17 70-86 10-26 (46)
277 2gqj_A Zinc finger protein KIA 24.0 39 0.0013 24.9 2.2 43 70-121 22-66 (98)
278 2drp_A Protein (tramtrack DNA- 23.8 41 0.0014 22.2 2.1 40 71-121 9-52 (66)
279 3gae_A Protein DOA1; UFD3, CDC 23.6 1.6E+02 0.0054 26.4 6.6 100 265-368 102-217 (253)
280 2ytq_A Zinc finger protein 268 23.6 1.2E+02 0.0041 18.1 4.3 15 71-85 11-25 (46)
281 1x6a_A LIMK-2, LIM domain kina 23.5 75 0.0026 22.5 3.6 35 70-104 39-76 (81)
282 2cur_A Skeletal muscle LIM-pro 23.1 79 0.0027 21.5 3.6 35 70-104 29-64 (69)
283 1nyp_A Pinch protein; LIM doma 22.6 57 0.002 22.0 2.7 32 70-101 29-61 (66)
284 2ctd_A Zinc finger protein 512 22.5 59 0.002 24.0 3.0 39 72-121 34-74 (96)
285 3pst_A Protein DOA1; protein d 22.4 2.1E+02 0.0072 27.8 7.5 107 220-330 278-393 (425)
286 2ee8_A Protein ODD-skipped-rel 22.3 1.1E+02 0.0038 22.2 4.6 18 68-85 13-30 (106)
287 2ely_A Zinc finger protein 224 21.8 67 0.0023 19.3 2.7 15 71-85 11-25 (46)
288 2lce_A B-cell lymphoma 6 prote 21.8 31 0.0011 23.7 1.1 41 70-121 15-57 (74)
289 1wyh_A SLIM 2, skeletal muscle 21.7 58 0.002 22.4 2.6 27 73-99 34-61 (72)
290 2eml_A Zinc finger protein 28 21.7 87 0.003 18.7 3.3 14 71-84 11-24 (46)
291 1j8f_A SIRT2, sirtuin 2, isofo 21.7 40 0.0014 31.6 2.2 31 90-121 167-197 (323)
292 2l4z_A DNA endonuclease RBBP8, 21.5 53 0.0018 25.9 2.6 37 73-120 62-99 (123)
293 2cor_A Pinch protein; LIM doma 21.2 51 0.0017 23.5 2.2 30 70-99 39-68 (79)
294 1x6e_A Zinc finger protein 24; 21.1 18 0.00062 24.8 -0.3 41 70-121 12-54 (72)
295 2ene_A Zinc finger protein 347 21.1 97 0.0033 18.5 3.4 14 71-84 11-24 (46)
296 2dar_A PDZ and LIM domain prot 20.8 43 0.0015 24.5 1.8 34 70-103 49-83 (90)
297 3pst_A Protein DOA1; protein d 20.7 4.9E+02 0.017 25.2 9.8 102 265-369 274-390 (425)
298 1use_A VAsp, vasodilator-stimu 20.6 1.3E+02 0.0043 19.3 3.6 25 6-33 7-31 (45)
299 2em8_A Zinc finger protein 224 20.5 62 0.0021 19.5 2.4 16 70-85 10-25 (46)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=3.6e-27 Score=231.89 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhc-------------ChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCcccHHHH
Q 041408 159 KLQIIKLIKDIW-------------KPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQVGGLEGA 224 (425)
Q Consensus 159 ~~~i~~lv~~l~-------------s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~A 224 (425)
.+++++|+..+. ++..+..|+++|.+++.+++.+|..+.. .|+||.|+.+|.+++. .+++.|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~----~v~~~A 147 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE----DLQQVI 147 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH----HHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH----HHHHHH
Confidence 356777777762 1367899999999999888889988865 5669999999987654 449999
Q ss_pred HHHHHhcCCC-hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHh-cccchhHhhcchhHHHHHHH
Q 041408 225 LSILHFFKIT-SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQ-AASSKFLQRLKPQIFQNIIR 302 (425)
Q Consensus 225 l~~L~~L~~~-~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~~~~~~g~i~~Lv~ 302 (425)
+++|.+|+.+ ++..+..+.+. |+|+.|+.+|.+ .++.+.++.|+.+|++|+. .++++..++...|++|.|++
T Consensus 148 ~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~-----~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~ 221 (354)
T 3nmw_A 148 ASVLRNLSWRADVNSKKTLREV-GSVKALMECALE-----VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 221 (354)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHH
Confidence 9999999975 44455555543 999999998643 2788999999999999998 45666666656799999999
Q ss_pred HhccccCCh----HHHHHHHHHHHHhCC----CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhH
Q 041408 303 VLKQRVIAQ----QGINAALKLMLDACP----SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGR 373 (425)
Q Consensus 303 lL~~~~~~~----~~~~~A~~aL~~L~~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r 373 (425)
+|..+ ++ ++++.|+++|+||+. +++++..++++|+||+|+++|.++ +..+++.|+++|.+|+. +++++
T Consensus 222 lL~~~--~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~ 298 (354)
T 3nmw_A 222 TLTYR--SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQ 298 (354)
T ss_dssp HTTCC--CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HhccC--CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHH
Confidence 99876 43 589999999999995 778999999999999999999986 88899999999999995 78888
Q ss_pred HHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 374 AQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 374 ~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
..+++ .|++|.|+++|..++...++.|+++|++|+.+.+.
T Consensus 299 ~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 299 EALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 88866 78999999988888899999999999999998776
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=8e-27 Score=229.45 Aligned_cols=238 Identities=14% Similarity=0.102 Sum_probs=195.0
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcc-------cCCCcccHHHHHHHHHhcCCChHHHHhhhhch
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCC-------DKNQVGGLEGALSILHFFKITSEYMKLSAFEI 245 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~ 245 (425)
+.++.|+++|.+++. ++++|..|++.|+++.|+.+|.+.. ...+...+..|+++|.+|+.+++..+..+...
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456789999999986 4899999999999999999996431 00112458999999999998877666666333
Q ss_pred hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc-c-cchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHH
Q 041408 246 DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA-A-SSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLML 322 (425)
Q Consensus 246 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~-~-~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~ 322 (425)
+|+||.||.+|++ ++.+++..|+++|.+|+.. + +++..++ +.|+||+|+++| +++ ++.+++.|+.+|+
T Consensus 126 ~GaIp~LV~LL~s------~~~~v~~~A~~aL~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 126 KGCMRALVAQLKS------ESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVK--KESTLKSVLSALW 196 (354)
T ss_dssp HHHHHHHHHGGGC------SCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCC--CHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCC------CCHHHHHHHHHHHHHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 4789999999998 8999999999999999985 3 3444444 569999999985 556 8899999999999
Q ss_pred HhCC-CCCchHHHH-hhCchHHHHHHhhccCCc---chHHHHHHHHHHHhC----CHhhHHHHhhccccHHHHHHHHhcC
Q 041408 323 DACP-SGRNRMIMV-ESGAVFELIELELTASEK---KTTELILGILFHLCS----CADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 323 ~L~~-~~~n~~~iv-~~G~v~~Lv~lL~~~~~~---~~~e~Al~~L~~L~~----~~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
||+. +++|+..++ ..|+||+|+++|.++++. .+++.|+++|.+|+. .++++..+++ .|++|.|+++|.++
T Consensus 197 nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~ 275 (354)
T 3nmw_A 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSH 275 (354)
T ss_dssp HHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCS
T ss_pred HHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCC
Confidence 9998 668898888 799999999999875322 489999999999995 7888888766 78899999999888
Q ss_pred ChHHHHHHHHHHHHHhccCCChHHHHHH
Q 041408 394 SPAADDRAILILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~~~~~~~v~e 421 (425)
+...++.|+++|++|+.++.+.++.+.+
T Consensus 276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 303 (354)
T 3nmw_A 276 SLTIVSNACGTLWNLSARNPKDQEALWD 303 (354)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999765443445544
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=4.4e-26 Score=230.85 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=202.6
Q ss_pred HHHHHHHHHhc-------------ChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCcccHHHHH
Q 041408 160 LQIIKLIKDIW-------------KPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQVGGLEGAL 225 (425)
Q Consensus 160 ~~i~~lv~~l~-------------s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~Al 225 (425)
+.+.+|+..+. ++..+..|+++|.+++.+++.+|..+.. .|+||.|+.+|.+.+. .+++.|+
T Consensus 189 G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~----~v~~~A~ 264 (458)
T 3nmz_A 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE----DLQQVIA 264 (458)
T ss_dssp THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH----HHHHHHH
T ss_pred CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH----HHHHHHH
Confidence 45677777662 1356899999999999888888888865 5669999999987654 4499999
Q ss_pred HHHHhcCCC-hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHh-cccchhHhhcchhHHHHHHHH
Q 041408 226 SILHFFKIT-SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQ-AASSKFLQRLKPQIFQNIIRV 303 (425)
Q Consensus 226 ~~L~~L~~~-~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~~~~~~g~i~~Lv~l 303 (425)
++|.+|+.+ ++..+..+.+. |+|+.||.+|.+ .++.+.++.|+.+|++|+. .++++..++...|++|.|+++
T Consensus 265 ~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~-----s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~L 338 (458)
T 3nmz_A 265 SVLRNLSWRADVNSKKTLREV-GSVKALMECALE-----VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338 (458)
T ss_dssp HHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTT-----CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhc-----CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHH
Confidence 999999974 44555555543 999999998654 2788999999999999999 556777776567999999999
Q ss_pred hccccCCh----HHHHHHHHHHHHhCC----CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHH
Q 041408 304 LKQRVIAQ----QGINAALKLMLDACP----SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRA 374 (425)
Q Consensus 304 L~~~~~~~----~~~~~A~~aL~~L~~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~ 374 (425)
|..+ +. ++++.|+++|+||+. +++++..++++|+||+|+++|.++ +..+++.|+++|.||+. .++++.
T Consensus 339 L~~~--~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~ 415 (458)
T 3nmz_A 339 LTYR--SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQE 415 (458)
T ss_dssp TTCC--CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred hcCC--CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHH
Confidence 9876 33 589999999999995 778999999999999999999986 88899999999999995 788888
Q ss_pred HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 375 QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 375 ~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.+++ .|++|.|+++|..++...++.|+++|++|+.+.+.
T Consensus 416 ~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 416 ALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 8866 78999999988888899999999999999998765
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=229.50 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcc-------cCCCcccHHHHHHHHHhcCCChHHHHhhhhchhc
Q 041408 175 QTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCC-------DKNQVGGLEGALSILHFFKITSEYMKLSAFEIDK 247 (425)
Q Consensus 175 ~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g 247 (425)
+++|+|+|.+++. ++++|..|++.|+++.|+.+|.... ...+...+..|+++|.||+.+++..+..+...+|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4689999999964 6899999999999999999996421 0011245899999999999888766666643347
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc-c-cchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHHh
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQA-A-SSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLDA 324 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~-~-~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L 324 (425)
+||.|+.+|++ ++.+++..|+++|.+|+.. + .++..+ .+.|+||+|+++| .++ ++.+++.|+.+|+||
T Consensus 244 aIp~LV~LL~s------~~~~v~~~A~~aL~nLs~~~~~~~k~~I-~~~GaI~~LV~lLl~s~--~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 244 CMRALVAQLKS------ESEDLQQVIASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVK--KESTLKSVLSALWNL 314 (458)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTSSCCHHHHHHH-HHTTHHHHHHHHHTTCC--SHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhC------CCHHHHHHHHHHHHHHhcCCCHHHHHHH-HHcCCHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 89999999998 8999999999999999985 3 344444 4569999999975 555 889999999999999
Q ss_pred CC-CCCchHHHH-hhCchHHHHHHhhccCCc---chHHHHHHHHHHHhC----CHhhHHHHhhccccHHHHHHHHhcCCh
Q 041408 325 CP-SGRNRMIMV-ESGAVFELIELELTASEK---KTTELILGILFHLCS----CADGRAQFLSHRAAIAVVTKRIMQVSP 395 (425)
Q Consensus 325 ~~-~~~n~~~iv-~~G~v~~Lv~lL~~~~~~---~~~e~Al~~L~~L~~----~~e~r~~~~~~~g~i~~Lv~ll~~~s~ 395 (425)
+. +++|+..++ .+|+||+|+++|...++. .+++.|+++|.+|+. .++++..+++ .|++|.|+++|.+++.
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~ 393 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSL 393 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCH
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCCh
Confidence 99 778999998 799999999999876332 489999999999995 7888888766 7889999999888899
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHHH
Q 041408 396 AADDRAILILSLICKFSGNFNFVVQE 421 (425)
Q Consensus 396 ~~~e~a~~~L~~l~~~~~~~~~~v~e 421 (425)
..++.|+++|++|+.++.+.++.|.+
T Consensus 394 ~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 394 TIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999765443444444
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=6.5e-25 Score=204.85 Aligned_cols=236 Identities=12% Similarity=0.152 Sum_probs=200.6
Q ss_pred HHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
....++..+. +++.+..|++.|+.+...++.++..+.+.|++|.|+.+|.+.+. .++..|+++|.+++.+++..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE----QILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH----HHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCHHH
Confidence 3566666663 45889999999977666688889999999999999999987653 45999999999999865555
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+..+... |+++.|+.+|++ ++++++..|+++|.+++..++.+.......|+++.|+++|.++ ++.+++.|+
T Consensus 89 ~~~i~~~-g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~ 159 (252)
T 4db8_A 89 IQAVIDA-GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEAL 159 (252)
T ss_dssp HHHHHHT-THHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHH
Confidence 5555543 999999999998 8899999999999999998888745555679999999999988 999999999
Q ss_pred HHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 319 KLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 319 ~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
++|.+|+.. ++++..+++.|++|.|+++|.+. ++.+++.|+.+|.+|+. .++.+..+++ .|+++.|++++...++.
T Consensus 160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~ 237 (252)
T 4db8_A 160 WALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEK 237 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSH
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHH
Confidence 999999985 46778889999999999999886 88999999999999996 5556666654 78999999988888899
Q ss_pred HHHHHHHHHHHHhcc
Q 041408 397 ADDRAILILSLICKF 411 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~ 411 (425)
.++.|+++|.+|+++
T Consensus 238 v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 238 IQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHTHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999864
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.8e-24 Score=201.00 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=205.5
Q ss_pred HHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
.++.++..+.+ ++.+..|++.|.+++.+++.++..+.+.|+++.|+.+|.+.+. .++..|+++|.+++.+++..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS----EVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH----HHHHHHHHHHHHHHcCChHH
Confidence 57788888844 5788999999999999888899999999999999999987654 45999999999999885555
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+..+... |+++.|+.+|++ ++.+++..|+++|.+++..++.........|+++.|+++|.++ ++.++..|+
T Consensus 79 ~~~~~~~-~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 79 IKAIVDA-GGVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp HHHHHHT-THHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 5555543 999999999997 8899999999999999976555555455579999999999998 899999999
Q ss_pred HHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 319 KLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 319 ~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
++|.+|+... .++..+++.|++|.|+.+|.+. ++.++..|+.+|.+|+. .++.+..+.+ .|+++.|++++...++.
T Consensus 150 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHH
Confidence 9999999854 5668889999999999999875 88999999999999998 5555656654 78999999988888899
Q ss_pred HHHHHHHHHHHHhccCCC
Q 041408 397 ADDRAILILSLICKFSGN 414 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~~ 414 (425)
.++.|+++|.+|+.+.+.
T Consensus 228 v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999987665
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.93 E-value=1.2e-24 Score=221.69 Aligned_cols=244 Identities=12% Similarity=0.058 Sum_probs=195.5
Q ss_pred HHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHH
Q 041408 162 IIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMK 239 (425)
Q Consensus 162 i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~ 239 (425)
++.++..|+ +++.+..|++.|++++.+++.++..+++.|+||.|+.+|.+++. .++..|+++|.||+.+++.++
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ----NVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH----HHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCHHHH
Confidence 667777774 45889999999999998888889899999999999999987654 449999999999998755556
Q ss_pred hhhhchhchHHHHHHHHc-cccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhc--------ccc--
Q 041408 240 LSAFEIDKIVESFTWVLA-LDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLK--------QRV-- 308 (425)
Q Consensus 240 ~~v~~~~g~i~~Lv~lL~-~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~--------~~~-- 308 (425)
..+.+. |+||.|+.+|+ + ++.++++.|+++|.||+..++++..++ + |++|+|+++|. +++
T Consensus 80 ~~i~~~-G~i~~Lv~lL~~~------~~~~~~~~a~~aL~nLa~~~~~~~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~ 150 (457)
T 1xm9_A 80 LETRRQ-NGIREAVSLLRRT------GNAEIQKQLTGLLWNLSSTDELKEELI-A-DALPVLADRVIIPFSGWCDGNSNM 150 (457)
T ss_dssp HHHHHT-TCHHHHHHHHTTC------CCHHHHHHHHHHHHHHHTSSSTHHHHH-H-HHHHHHHHHTTHHHHTCC------
T ss_pred HHHHHc-CCHHHHHHHHhhC------CCHHHHHHHHHHHHHHhcCHHhHHHHH-h-ccHHHHHHHHhccccccccCccch
Confidence 655543 99999999999 5 889999999999999999977666555 5 99999999993 220
Q ss_pred ----CChHHHHHHHHHHHHhCCCCCchHHHHhh-CchHHHHHHhhcc-----C---------------------------
Q 041408 309 ----IAQQGINAALKLMLDACPSGRNRMIMVES-GAVFELIELELTA-----S--------------------------- 351 (425)
Q Consensus 309 ----~~~~~~~~A~~aL~~L~~~~~n~~~iv~~-G~v~~Lv~lL~~~-----~--------------------------- 351 (425)
.++.+.+.|+++|+|||.+++++..+++. |++|+|+.+|.++ .
T Consensus 151 ~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~ 230 (457)
T 1xm9_A 151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230 (457)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred hcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence 13455669999999999988899999998 9999999998741 0
Q ss_pred ------------------------------------------------------------------CcchHHHHHHHHHH
Q 041408 352 ------------------------------------------------------------------EKKTTELILGILFH 365 (425)
Q Consensus 352 ------------------------------------------------------------------~~~~~e~Al~~L~~ 365 (425)
++.+++.|+++|.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310 (457)
T ss_dssp HHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 12345667888888
Q ss_pred HhCCHh-----hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHH
Q 041408 366 LCSCAD-----GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVV 419 (425)
Q Consensus 366 L~~~~e-----~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v 419 (425)
|+.... ..+.++...||+|.|+++|.+++..++..|+++|.+|+.+... +.+|
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~-~~~i 368 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVM 368 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HHHH
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH-HHHH
Confidence 886432 1123445578999999999888999999999999999997655 4444
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.91 E-value=3.1e-23 Score=214.79 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=196.7
Q ss_pred CCHHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 157 LSKLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 157 ~~~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
.....++++|..|.+ ...+..|++.|++++.+++.+|..|++.|+||.|+.+|.+.+. .+++.|+++|.||+.+
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~----~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK----EVHLGACGALKNISFG 120 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH----HHHHHHHHHHHHHTSS
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH----HHHHHHHHHHHHHHcc
Confidence 345679999999854 5788999999999999999999999999999999999988764 4599999999999985
Q ss_pred -hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcc---c---
Q 041408 235 -SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQ---R--- 307 (425)
Q Consensus 235 -~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~---~--- 307 (425)
++.++..|.+. |+|+.||.+|++ +.+.+++++|+++|++|+..++++..++ . |++|+|+++|.. +
T Consensus 121 ~~~~nk~~I~~~-GaIp~LV~LL~s-----~~~~~~~e~aa~aL~nLS~~~~~k~~I~-~-~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 121 RDQDNKIAIKNC-DGVPALVRLLRK-----ARDMDLTEVITGTLWNLSSHDSIKMEIV-D-HALHALTDEVIIPHSGWER 192 (584)
T ss_dssp SCHHHHHHHHHT-THHHHHHHHHHH-----CCSHHHHHHHHHHHHHHTTSGGGHHHHH-H-HTHHHHHHHTHHHHHCCC-
T ss_pred CCHHHHHHHHHc-CCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHhCCchhhHHHH-h-ccHHHHHHHHhcccccccc
Confidence 34455555543 999999999997 3578899999999999999888887776 3 569999998821 0
Q ss_pred ----------cCChHHHHHHHHHHHHhCCCCC-chHHHHhh-CchHHHHHHhhcc-------------------------
Q 041408 308 ----------VIAQQGINAALKLMLDACPSGR-NRMIMVES-GAVFELIELELTA------------------------- 350 (425)
Q Consensus 308 ----------~~~~~~~~~A~~aL~~L~~~~~-n~~~iv~~-G~v~~Lv~lL~~~------------------------- 350 (425)
+.++.+++.|+++|+||+...+ ++..+++. |+|++||.+|.+.
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 1256899999999999999764 58888874 6677888877531
Q ss_pred ------------------------------------------------CCcchHHHHHHHHHHHhCCH----hhHHHHhh
Q 041408 351 ------------------------------------------------SEKKTTELILGILFHLCSCA----DGRAQFLS 378 (425)
Q Consensus 351 ------------------------------------------------~~~~~~e~Al~~L~~L~~~~----e~r~~~~~ 378 (425)
.+..++|.|+++|.|||... ..-..++.
T Consensus 273 ~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~ 352 (584)
T 3l6x_A 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352 (584)
T ss_dssp HHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence 12334556666666666532 11122445
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHH
Q 041408 379 HRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVV 419 (425)
Q Consensus 379 ~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v 419 (425)
..+|+|.|+++|...+..+++.|+++|++|+.+..+ +.+|
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~~I 392 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELI 392 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-HHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-HHHH
Confidence 578899999999888999999999999999999877 5554
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.91 E-value=2.2e-23 Score=215.30 Aligned_cols=253 Identities=14% Similarity=0.082 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.+++||..|++ +..+.+|+|+|.+++.+++++++.+++.|+||.|+.+|.+++. .+++.|+++|++|+.+.
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~----~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA----HISEQAVWALGNIAGDG 174 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCC
Confidence 4668889998842 4789999999999999999999999999999999999987764 45999999999999887
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+..+..+... |+++.|+.+|.+. +.-......+..++++|.+++.+...........|++|.|+++|.++ +++++.
T Consensus 175 ~~~r~~v~~~-G~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~ 250 (510)
T 3ul1_B 175 SAFRDLVIKH-GAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLA 250 (510)
T ss_dssp HHHHHHHHHT-TCHHHHHHHTCSS-CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHH
T ss_pred HHHHHHHHHc-CChHHHHHHHHhc-cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHH
Confidence 7777777654 9999999999851 00012356778999999999998766555444468999999999998 999999
Q ss_pred HHHHHHHHhCCCCCc-hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 316 AALKLMLDACPSGRN-RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.|+++|.+|+....+ ...+++.|++|.|+++|.+. +..++..|+.+|.+|+...+.....+...|+++.|+++|.+.+
T Consensus 251 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~ 329 (510)
T 3ul1_B 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329 (510)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS
T ss_pred HHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC
Confidence 999999999987654 45567899999999999886 8889999999999998855544444344789999999888888
Q ss_pred hHHHHHHHHHHHHHhccCCChHHHHH
Q 041408 395 PAADDRAILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~~~~~v~ 420 (425)
...++.|+++|.+|+.+.....+.+.
T Consensus 330 ~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 330 TNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999987665444443
No 10
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=7.9e-24 Score=195.28 Aligned_cols=199 Identities=13% Similarity=0.153 Sum_probs=164.9
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
-.+|.|+++|.+++.+. ..+..|++.|.+|+..++..+..+... |+||.||.+|++ ++.+++..|+++|.+
T Consensus 8 ~~i~~lV~lL~s~~~~~--~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s------~~~~vq~~Aa~aL~n 78 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLP--SRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKV------QNEDVQRAVCGALRN 78 (233)
T ss_dssp CCHHHHHHTCCSSCCCH--HHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGC------CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCchH--HHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 35899999998876421 347889999999997655555555543 999999999998 899999999999999
Q ss_pred HHhcc-cchhHhhcchhHHHHHHHHhcc-ccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhh---cc----
Q 041408 280 IIQAA-SSKFLQRLKPQIFQNIIRVLKQ-RVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELEL---TA---- 350 (425)
Q Consensus 280 L~~~~-~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~---~~---- 350 (425)
|+..+ +++..+ .+.|+||+|+++|++ + +..+++.|+.+|+||+..++++..+++. +||+|++++. ++
T Consensus 79 La~~~~~nk~~I-~~~GaI~~Lv~lL~~~~--~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 79 LVFEDNDNKLEV-AELNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHTTCHHHHHHH-HHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGG
T ss_pred HHhCCHHHHHHH-HHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccc
Confidence 99864 455554 456999999999984 6 8899999999999999999999999874 6999999763 11
Q ss_pred --------CCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcC------ChHHHHHHHHHHHHHhcc
Q 041408 351 --------SEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQV------SPAADDRAILILSLICKF 411 (425)
Q Consensus 351 --------~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~------s~~~~e~a~~~L~~l~~~ 411 (425)
.+..+++.|.++|.||+. .+++|+++++.+|+|+.|+.++... +.+.+|+|+.+|++||.+
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 145799999999999998 5699999988888899999988753 458899999999999975
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=3.8e-23 Score=220.91 Aligned_cols=242 Identities=17% Similarity=0.056 Sum_probs=200.6
Q ss_pred HHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH
Q 041408 160 LQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 160 ~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
+.++.|+..+++ +..+.+|+|+|.+++ +++++|..+++.|++|.|+.+|.++... .++.|+++|.+|+.+.+.
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~----~k~~Aa~AL~nL~~~~~p 569 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEK----GKRHATQALARIGITINP 569 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHH----HHHHHHHHHHHHhcCCCh
Confidence 456777877754 588999999999998 4677999999999999999999876543 489999999998753222
Q ss_pred HHhhhh-chhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 238 MKLSAF-EIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 238 ~~~~v~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
...+-. ...|+++.|+.+|.+ +.+...+..|+++|.||+..++.......+.|+++.|+.+|.++ ++.+++.
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~-----~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~ 642 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQ-----DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRA 642 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTST-----TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHH
Confidence 111101 012799999999986 24556667899999999998654444445568999999999988 8999999
Q ss_pred HHHHHHHhCCCCCchHHHHh-hCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 317 ALKLMLDACPSGRNRMIMVE-SGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 317 A~~aL~~L~~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
|+++|+||+.+++++..+++ .|++++|+.++.+. +..+++.|+++|++|+. .++..+.++...|+++.|+++|.+++
T Consensus 643 A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721 (810)
T ss_dssp HHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC
Confidence 99999999999889888886 79999999999886 88999999999999998 67788888775789999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...++.|+++|.+++.++..
T Consensus 722 ~~vq~~A~~aL~NL~~~s~e 741 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGEE 741 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999986543
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.90 E-value=8.3e-23 Score=211.86 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=207.9
Q ss_pred HHHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.++.|+..|+ ++..+.+|+|+|.+++.++++++..+++.|+||.|+.+|.+++.. +++.|+++|++|+.++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~----v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH----ISEQAVWALGNIAGAG 193 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH----HHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH----HHHHHHHHHHHHhccC
Confidence 466788888884 257899999999999999999999999999999999999887653 4999999999999887
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+..+..+... |+++.|+.+|... +........+..++++|.+++.+...........|++|.|+++|.++ +++++.
T Consensus 194 ~~~r~~i~~~-g~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~ 269 (529)
T 3tpo_A 194 SAFRDLVIKH-GAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLA 269 (529)
T ss_dssp HHHHHHHHHT-TCHHHHHHTTCSS-CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHH
T ss_pred HHHHHHHHHc-CCcHHHHHHHhcc-chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHH
Confidence 7777777654 9999999999851 00012356788999999999988766555444468999999999998 999999
Q ss_pred HHHHHHHHhCCCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh-hHHHHhhccccHHHHHHHHhcC
Q 041408 316 AALKLMLDACPSGR-NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD-GRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 316 ~A~~aL~~L~~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e-~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
.|+++|.+|+.... ....+++.|++|.|+++|.+. +..++..|+.+|.+|+...+ .+..++ ..|+++.|+++|.+.
T Consensus 270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCS
T ss_pred HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHHcCC
Confidence 99999999998765 455667899999999999886 88999999999999988554 445554 478999999988888
Q ss_pred ChHHHHHHHHHHHHHhccCCChHHHHH
Q 041408 394 SPAADDRAILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~~~~~~~v~ 420 (425)
+...++.|+++|.+|+.++......+.
T Consensus 348 ~~~i~~~a~~aL~nl~~~~~~~~~~v~ 374 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGRQDQIQQVV 374 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 889999999999999987665434443
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.8e-22 Score=215.69 Aligned_cols=241 Identities=12% Similarity=0.039 Sum_probs=200.2
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhch-----------------------------hhh---hHHhhcCcHHH
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENE-----------------------------RNR---KCMAEAGVPRA 204 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~-----------------------------~~r---~~i~~~G~i~~ 204 (425)
.+.+++|+..+++ +..+..|++.|.+++.+.+ .++ +.++++|+||.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 4667888888843 5789999999999997542 223 68889999999
Q ss_pred HHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc
Q 041408 205 MLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA 284 (425)
Q Consensus 205 Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~ 284 (425)
|+.+|.+++. .+++.|+++|.||+.+++. +..+.+. |+++.|+.+|++ ++...++.|+++|.+|+...
T Consensus 500 LV~LL~s~s~----~vqe~Aa~aL~NLA~d~~~-r~~Vv~~-Gaip~Lv~LL~s------~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 500 LCALAKTESH----NSQELIARVLNAVCGLKEL-RGKVVQE-GGVKALLRMALE------GTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTCCCH----HHHHHHHHHHHHHHTSHHH-HHHHHHT-THHHHHHHHHHS------SCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCH----HHHHHHHHHHHHHcCCHHH-HHHHHHC-CCHHHHHHHHcc------CCHHHHHHHHHHHHHHhcCC
Confidence 9999988754 4499999999999987665 4444443 999999999997 88999999999999999875
Q ss_pred cchhHhhc--chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHH
Q 041408 285 SSKFLQRL--KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILG 361 (425)
Q Consensus 285 ~~~~~~~~--~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~ 361 (425)
+....+.. ..|++|+|+.+|..+ .+...+..|+++|.||+.. ++++..++++|++|.|+++|.++ +..+++.|+.
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~ 645 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQ 645 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 54443221 146899999999854 2345567899999999996 47899999999999999999986 8899999999
Q ss_pred HHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCC
Q 041408 362 ILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 362 ~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~ 413 (425)
+|.||+..++.+.+++...|+++.|+.++...+...++.|+++|++|+.++.
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999998546889999998877788999999999999999643
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.89 E-value=4.6e-22 Score=206.27 Aligned_cols=246 Identities=9% Similarity=0.079 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCC-CcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKN-QVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~-~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.++.|+..+.+ ...+..|+++|.+++.+++.+|..+.+.|+++.|+.+|....... ....+..++++|.+++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 3567888887754 588999999999999999999999999999999999997654321 1134678899999998765
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
.....+... .|++|.|+.+|.+ ++.+++..|+++|.+++....+........|+++.|+.+|.++ ++.++.
T Consensus 241 ~~~~~~~~~-~~~lp~L~~LL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~ 311 (529)
T 3tpo_A 241 NPAPPLDAV-EQILPTLVRLLHH------NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVT 311 (529)
T ss_dssp TTCCCHHHH-HHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHH
T ss_pred cchhhHHHH-hhHHHHHHHHhcC------CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHH
Confidence 544443332 3899999999998 8999999999999999998888777777789999999999988 999999
Q ss_pred HHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 316 AALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 316 ~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.|+++|.|++.. +.++..+++.|++++|+.+|.+. +..+++.|+++|.+|+.........+...|++|.|+.++..++
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 999999999875 56788889999999999999886 8889999999999999855544444445789999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+..|+++|.+++.++..
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999987554
No 15
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.88 E-value=5.2e-22 Score=202.25 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHh-hcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIV-NCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.++.|+..|++ +..+..|+++|++++.+++++|..|+++|+||.|+++|. +++. .+++.|+++|.||+.++
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~----~~~~~a~~aL~nLa~~~ 118 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA----EIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH----HHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH----HHHHHHHHHHHHHhcCH
Confidence 4678899998854 578899999999999888999999999999999999997 5433 45999999999999885
Q ss_pred HHHHhhhhchhchHHHHHHHHc--------ccccc-c-cCCHHHHHHHHHHHHHHHhcccchhHhhcch-hHHHHHHHHh
Q 041408 236 EYMKLSAFEIDKIVESFTWVLA--------LDDES-I-ENHKEIKSHALRILKNIIQAASSKFLQRLKP-QIFQNIIRVL 304 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~--------~~~~~-~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~-g~i~~Lv~lL 304 (425)
+ .+..+.. |+++.|+.+|. +...+ . ..+.++..+|+++|+||+..++++.. ..+. |++++|+.+|
T Consensus 119 ~-~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~-i~~~~g~i~~Lv~lL 194 (457)
T 1xm9_A 119 E-LKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT-MRNYSGLIDSLMAYV 194 (457)
T ss_dssp S-THHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHH-HTTSTTHHHHHHHHH
T ss_pred H-hHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHH-HHHcCCCHHHHHHHH
Confidence 4 4554543 89999999993 20000 0 02355667999999999988554444 4444 8899999888
Q ss_pred ccc-----------------------------------------------------------------------------
Q 041408 305 KQR----------------------------------------------------------------------------- 307 (425)
Q Consensus 305 ~~~----------------------------------------------------------------------------- 307 (425)
.++
T Consensus 195 ~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (457)
T 1xm9_A 195 QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274 (457)
T ss_dssp HHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCC
T ss_pred HhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCch
Confidence 641
Q ss_pred --------------------cCChHHHHHHHHHHHHhCCCCCc------hHHHHhhCchHHHHHHhhccCCcchHHHHHH
Q 041408 308 --------------------VIAQQGINAALKLMLDACPSGRN------RMIMVESGAVFELIELELTASEKKTTELILG 361 (425)
Q Consensus 308 --------------------~~~~~~~~~A~~aL~~L~~~~~n------~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~ 361 (425)
+.++..++.|+++|.||+..... +..+.++|++|+|+++|.++ +..++..|++
T Consensus 275 ~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~ 353 (457)
T 1xm9_A 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGAS 353 (457)
T ss_dssp GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHH
Confidence 01356677889999999985432 22333689999999999987 8899999999
Q ss_pred HHHHHhCCHhhHHHHhhccccHHHHHHHHhcCCh------HHHHHHHHHHHHHhccCCChHHHHH
Q 041408 362 ILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSP------AADDRAILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 362 ~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~------~~~e~a~~~L~~l~~~~~~~~~~v~ 420 (425)
+|.+|+...+++..+. .+++|.|+++|...++ +....++.+|.++..+++...+.+.
T Consensus 354 aL~nls~~~~~~~~i~--~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~ 416 (457)
T 1xm9_A 354 LLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYF 416 (457)
T ss_dssp HHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHC
T ss_pred HHHHHhcCHHHHHHHH--HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999888887664 3689999997776532 4666888888888877665334443
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.88 E-value=6e-22 Score=204.50 Aligned_cols=246 Identities=9% Similarity=0.084 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCC-CcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKN-QVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~-~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.++.|+..|++ ...+..|+++|.+++.+++.+|..+.+.|+++.|+.+|.+.+... ....+..++++|.+++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 3568888888865 488999999999999989999999999999999999997654321 1134678899999998765
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
.....+... .|+++.|+.+|.+ .+.+++..|+++|.+|+....+........|+++.|+.+|.++ ++.++.
T Consensus 222 ~~~~~~~~~-~~~lp~L~~LL~~------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~ 292 (510)
T 3ul1_B 222 NPAPPLDAV-EQILPTLVRLLHH------NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVT 292 (510)
T ss_dssp SSCCCHHHH-HHHHHHHHHHTTC------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHH
T ss_pred cchhHHHHH-HhHHHHHHHHHhc------CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--Chhhhh
Confidence 444333332 3899999999998 8999999999999999998887777777789999999999998 999999
Q ss_pred HHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 316 AALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 316 ~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.|+++|.|++.. +.++..+++.|++++|+.+|.+. +..+++.|+++|.+|+.........+...|++|.|++++..++
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 999999999875 46788889999999999999876 8889999999999999855444444445789999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+..|+++|.+++.++..
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHccCCH
Confidence 99999999999999987654
No 17
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=181.07 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=165.3
Q ss_pred HHHHHHHHhcC--h--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 161 QIIKLIKDIWK--P--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 161 ~i~~lv~~l~s--~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.++++|+.|++ + +.+..|++.|++++.+++.+|..|.+.|+||.|+++|.+++. .+++.|+++|.||+.+++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~----~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE----DVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH----HHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCH
Confidence 47888888854 3 567889999999999999999999999999999999987654 459999999999998665
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhc---cc------
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLK---QR------ 307 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~---~~------ 307 (425)
.++..|.+. |+||.|+.+|++ +++.+++++|+.+|++|+..+.++..++. +++|+|++++. .|
T Consensus 85 ~nk~~I~~~-GaI~~Lv~lL~~-----~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 85 DNKLEVAEL-NGVPRLLQVLKQ-----TRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HHHHHHHHT-THHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGC
T ss_pred HHHHHHHHc-CCHHHHHHHHcc-----CCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccc
Confidence 666666654 999999999984 27899999999999999999888887763 56999999773 12
Q ss_pred -----cCChHHHHHHHHHHHHhCCCC-CchHHHHhh-CchHHHHHHhhcc-----CCcchHHHHHHHHHHHhCC
Q 041408 308 -----VIAQQGINAALKLMLDACPSG-RNRMIMVES-GAVFELIELELTA-----SEKKTTELILGILFHLCSC 369 (425)
Q Consensus 308 -----~~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~e~Al~~L~~L~~~ 369 (425)
+.++.++++|+.+|+||+..+ ++|+.|.+. |+|++||.++... .+...+|.|+.+|.||+..
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 125689999999999999854 899999985 7899999999763 2567899999999999864
No 18
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.88 E-value=7.1e-23 Score=179.52 Aligned_cols=97 Identities=32% Similarity=0.555 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHhhhhcccc--CCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 041408 45 QKPQQQHIIILSLLFQMDDH--QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKD 122 (425)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~ 122 (425)
....++.+..+..++..++. ...++|++|+||||+++|+|||+++|||||||.||+.||..++ .+||+|+.++..
T Consensus 77 ~~~~~~~i~~~~~l~~~~~~~~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~- 153 (179)
T 2f42_A 77 KSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQ- 153 (179)
T ss_dssp -CHHHHHHHHHHHHHHHHHHGGGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCG-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCCh-
Confidence 34566777777777865543 4678999999999999999999999999999999999998753 479999999987
Q ss_pred CCCCccHHHHHHHHHHHHcCCC
Q 041408 123 LDLTPNHTLRRLIQAWCADNSA 144 (425)
Q Consensus 123 ~~l~pn~~l~~~I~~~~~~n~~ 144 (425)
.+++||..|+++|+.|+..|+|
T Consensus 154 ~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 154 DQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp GGCEECHHHHHHHHHHHHHCTT
T ss_pred hhCcchHHHHHHHHHHHHHCCC
Confidence 8999999999999999999997
No 19
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.3e-21 Score=177.39 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=168.5
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
.|..+.|+.+|.+.+. .++..|+++|.+++.+++..+..+.+. |+++.|+.+|++ ++++++..|+++|.
T Consensus 11 ~~~~~~l~~LL~s~~~----~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~------~~~~v~~~a~~~L~ 79 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQ----QELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSS------PNEQILQEALWALS 79 (210)
T ss_dssp --CHHHHHHHTTCSCH----HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC------SCHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcCCCH----HHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 5889999999987654 449999999999996655555555543 999999999998 79999999999999
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTE 357 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e 357 (425)
+++..++.......+.|+++.|+.+|.++ ++.+++.|+++|.||+.. ++++..+++.|++|.|+++|.+. +..+++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~ 156 (210)
T 4db6_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQ 156 (210)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred HHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHH
Confidence 99977665555555679999999999998 999999999999999975 45677889999999999999886 889999
Q ss_pred HHHHHHHHHhCC-HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 358 LILGILFHLCSC-ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 358 ~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.|+.+|.+|+.. ++.+..+.+ .|+++.|++++...+...++.|+.+|.+|+.+
T Consensus 157 ~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 157 EALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 999999999996 666666655 78999999988888899999999999999864
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=2.8e-21 Score=175.24 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=168.1
Q ss_pred HHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
..+.++..+. ++..+..|++.|.+++.+++.++..+.+.|++|.|+.+|.+.+. .+++.|+++|.+++.+++..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE----QILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHTTSCHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCcHH
Confidence 3455566564 45888999999999998899999999999999999999987654 45999999999999766555
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+..+.+. |+++.|+.+|++ +++.++..|+++|.+++..+........+.|+++.|+++|.++ ++.+++.|+
T Consensus 89 ~~~i~~~-g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 159 (210)
T 4db6_A 89 IQAVIDA-GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEAL 159 (210)
T ss_dssp HHHHHHT-TCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHH
Confidence 5555543 999999999998 8899999999999999987776665556679999999999998 999999999
Q ss_pred HHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 319 KLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 319 ~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++|.+|+.. ++++..+++.|+++.|++++.+. +..+++.|+.+|.+|+.
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 999999986 67888899999999999999876 89999999999999986
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=1.6e-20 Score=194.13 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=201.9
Q ss_pred HHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 160 LQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 160 ~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
+.++.|+..+.+ +..+..|+++|.+++.++++++..+++.|++|.|+.+|.+.+. .+++.|+++|.+|+.+.+
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~----~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD----DVREQAVWALGNVAGDSP 192 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH----HHHHHHHHHHHHHhCCCh
Confidence 457778887743 5788999999999999889999999999999999999987643 459999999999997766
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
..+..+... |+++.|+.+|.. ..+..++..|+++|.+|+........... .|+++.|+.+|.++ ++.++..
T Consensus 193 ~~~~~i~~~-g~l~~Ll~lL~~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~--~~~v~~~ 263 (528)
T 4b8j_A 193 KCRDLVLAN-GALLPLLAQLNE-----HTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN--DEEVLTD 263 (528)
T ss_dssp HHHHHHHHT-TCHHHHHHTCCT-----TCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC--CHHHHHH
T ss_pred hhHHHHHHC-CcHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC--CHHHHHH
Confidence 666666543 899999999954 27899999999999999988654444443 58999999999988 9999999
Q ss_pred HHHHHHHhCCCCCc-hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-HhhHHHHhhccccHHHHHHHHhcC-
Q 041408 317 ALKLMLDACPSGRN-RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADGRAQFLSHRAAIAVVTKRIMQV- 393 (425)
Q Consensus 317 A~~aL~~L~~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv~ll~~~- 393 (425)
|+++|.+|+...++ ...+++.|++|.|+.+|.+. +..++..|+.+|.+|+.. ......++. .|+++.|+++|...
T Consensus 264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCC
Confidence 99999999987654 45778899999999999886 788999999999999984 445555554 78999999999888
Q ss_pred ChHHHHHHHHHHHHHhccCC
Q 041408 394 SPAADDRAILILSLICKFSG 413 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~~ 413 (425)
+...+..|+++|.+|+.+..
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~ 361 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNK 361 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCH
T ss_pred cHHHHHHHHHHHHHHHCCCH
Confidence 88999999999999998543
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.86 E-value=4.6e-21 Score=198.59 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=168.6
Q ss_pred HhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHH
Q 041408 196 MAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALR 275 (425)
Q Consensus 196 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~ 275 (425)
-...+.||.|+.+|.+.+. ..+..|+++|.+|+..++..+..|... |+||.||.+|++ ++.+++..|++
T Consensus 44 ~~~~~~i~~LV~~L~s~~~----~~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s------~~~~vq~~Aa~ 112 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLD----AVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDH------PKKEVHLGACG 112 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCH----HHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGC------SSHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCH----HHHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCC------CCHHHHHHHHH
Confidence 3357899999999987654 348999999999997665556656543 999999999998 89999999999
Q ss_pred HHHHHHhc--ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhc----
Q 041408 276 ILKNIIQA--ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELT---- 349 (425)
Q Consensus 276 ~L~~L~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~---- 349 (425)
+|.||+.+ ++++..++ ..|+||+||++|.++ .+..+++.|+++|+||+.+++++..+++ |+||+|+++|..
T Consensus 113 AL~nLa~~~~~~nk~~I~-~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg 189 (584)
T 3l6x_A 113 ALKNISFGRDQDNKIAIK-NCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSG 189 (584)
T ss_dssp HHHHHTSSSCHHHHHHHH-HTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHC
T ss_pred HHHHHHccCCHHHHHHHH-HcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccc
Confidence 99999985 45555554 569999999999973 2778999999999999999999999996 579999998821
Q ss_pred -------------cCCcchHHHHHHHHHHHhCCH-hhHHHHhhccccHHHHHHHHhc------CChHHHHHHHHHHHHHh
Q 041408 350 -------------ASEKKTTELILGILFHLCSCA-DGRAQFLSHRAAIAVVTKRIMQ------VSPAADDRAILILSLIC 409 (425)
Q Consensus 350 -------------~~~~~~~e~Al~~L~~L~~~~-e~r~~~~~~~g~i~~Lv~ll~~------~s~~~~e~a~~~L~~l~ 409 (425)
..+..+++.|+++|.||+... ++|..+++.+|+++.||.+|.. .+...+++|+++|++||
T Consensus 190 ~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp CC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 114688999999999999865 5699998888888999998864 35678999999999999
Q ss_pred cc
Q 041408 410 KF 411 (425)
Q Consensus 410 ~~ 411 (425)
.+
T Consensus 270 ~~ 271 (584)
T 3l6x_A 270 YQ 271 (584)
T ss_dssp TT
T ss_pred cc
Confidence 76
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=1.2e-20 Score=195.07 Aligned_cols=243 Identities=12% Similarity=0.048 Sum_probs=201.3
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhch-hhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENE-RNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
...++.++..+.+ +..+..|++.|+.++.... .++..+++.|++|.|+.+|.+.+. ..++..|+++|.+++.+.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~---~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF---PQLQFEAAWALTNIASGT 149 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC---HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC---HHHHHHHHHHHHHHhCCC
Confidence 3457888888844 5788999999998876554 678889999999999999987541 245899999999999876
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-ccccCChHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGI 314 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~ 314 (425)
+..+..+... |+++.|+.+|.+ .+.+++..|+++|.+|+.............|++++|+.+| .+. ++.++
T Consensus 150 ~~~~~~~~~~-g~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~--~~~v~ 220 (528)
T 4b8j_A 150 SENTKVVIDH-GAVPIFVKLLGS------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT--KLSML 220 (528)
T ss_dssp HHHHHHHHHT-THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC--CHHHH
T ss_pred HHHHHHHHhC-CcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC--CHHHH
Confidence 6555555543 999999999997 8999999999999999987665454455568999999999 455 88999
Q ss_pred HHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 315 NAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 315 ~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
..|+++|.+|+....+.......|++|.|+.+|.+. +..++..|+.+|.+|+.....+...+...|+++.|+++|...+
T Consensus 221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 999999999999766556666789999999999886 8899999999999999877666545455789999999888888
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+..|+.+|.+|+.+...
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHH
T ss_pred hhHHHHHHHHHHHHHcCCHH
Confidence 89999999999999986543
No 24
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=5.4e-20 Score=176.31 Aligned_cols=225 Identities=13% Similarity=0.123 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHH-HHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLT-YIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~ 251 (425)
+.+..|+..|..++. +.+|...+.+.|++|.|+. +|.+++. .+++.|+++|++++.+++..+..+... |+++.
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~----~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~ 128 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAA----GLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSH----HHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHH
Confidence 567889999999986 4557778889999999999 9987654 459999999999998887777666654 99999
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCc
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRN 330 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n 330 (425)
|+.+|++ +.+..+++.|+|+|.+++.+.......+...|+++.|+.+|+++ ++.++..|+++|.+|+. +++.
T Consensus 129 Ll~LL~~-----~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~ 201 (296)
T 1xqr_A 129 LLRLLDR-----DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEH 201 (296)
T ss_dssp HHHHHHH-----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHcc-----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHH
Confidence 9999996 25789999999999999988776655555568999999999998 99999999999999987 4678
Q ss_pred hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH-hhHHHHhhccccHHHHH----HHHh-cC-ChHHHHHHHH
Q 041408 331 RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA-DGRAQFLSHRAAIAVVT----KRIM-QV-SPAADDRAIL 403 (425)
Q Consensus 331 ~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~-e~r~~~~~~~g~i~~Lv----~ll~-~~-s~~~~e~a~~ 403 (425)
+..+++.|++|+|+.+|.+. +..+++.|+.+|.+|+... ............+..++ +.+. +. .....+.|..
T Consensus 202 ~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~ 280 (296)
T 1xqr_A 202 KGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEK 280 (296)
T ss_dssp HHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 99999999999999999886 8999999999999999863 33333322111233333 2222 22 3466778888
Q ss_pred HHHHHhcc
Q 041408 404 ILSLICKF 411 (425)
Q Consensus 404 ~L~~l~~~ 411 (425)
+|..+...
T Consensus 281 il~~~f~~ 288 (296)
T 1xqr_A 281 LLQTCFSS 288 (296)
T ss_dssp HHHHHCC-
T ss_pred HHHHHcCC
Confidence 88887754
No 25
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.85 E-value=5.6e-22 Score=153.99 Aligned_cols=76 Identities=29% Similarity=0.440 Sum_probs=70.1
Q ss_pred cCCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 64 HQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 64 ~~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
.....+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++.. .+++||..|+++|+.|+..|+
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTE-SMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCCh-HhcchHHHHHHHHHHHHHHhh
Confidence 345579999999999999999999999999999999999996 3799999999987 899999999999999998875
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.85 E-value=1.9e-20 Score=173.65 Aligned_cols=200 Identities=13% Similarity=0.129 Sum_probs=170.9
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
|+||.|+.+|.+.+. ..+..|+++|.+++..++.....+... |+++.|+.+|++ ++.+++..|+++|.+
T Consensus 2 ~~i~~L~~~L~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS----ETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS------TDSEVQKEAARALAN 70 (252)
T ss_dssp CHHHHHHHHTTCSCH----HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC------SCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCH----HHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC------CCHHHHHHHHHHHHH
Confidence 789999999987664 448999999999987776555555443 999999999998 789999999999999
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
++..++.......+.|+++.|+.+|.++ ++.++..|+++|.+|+. +++++..+++.|++|.|+++|.+. ++.++..
T Consensus 71 l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~ 147 (252)
T 4hxt_A 71 IASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKE 147 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHH
Confidence 9998555554455679999999999988 99999999999999995 678999999999999999999986 8899999
Q ss_pred HHHHHHHHhCCHhhH-HHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 359 ILGILFHLCSCADGR-AQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 359 Al~~L~~L~~~~e~r-~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
|+.+|.+|+...+.. ..++. .|+++.|++++...++..+..|+.+|.+|+.+++.
T Consensus 148 a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 203 (252)
T 4hxt_A 148 AARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999855444 55544 78999999988888889999999999999985444
No 27
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.85 E-value=1.5e-21 Score=155.40 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=71.1
Q ss_pred CCCCCCCcccCcCCccCCCCceecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 65 QDIEIPEYFICPISLQIMKDPVTAITG-ITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV~~~~g-~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
...++|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||+|++++.. .+++||..|+++|+.|+..++
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTM-DQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCT-TTSEECHHHHHHHHHHHHHST
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCCh-hhceEcHHHHHHHHHHHHHcc
Confidence 345789999999999999999999999 99999999999986 3799999999987 899999999999999999988
Q ss_pred CC
Q 041408 144 AY 145 (425)
Q Consensus 144 ~~ 145 (425)
+.
T Consensus 91 ~~ 92 (98)
T 1wgm_A 91 QQ 92 (98)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 28
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.84 E-value=1.5e-21 Score=156.01 Aligned_cols=75 Identities=29% Similarity=0.464 Sum_probs=69.9
Q ss_pred CCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 65 QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
...++|++|+||||+++|+|||+++|||+|||.||++||.. ..+||.|++++.. .+++||..|+++|+.|+..|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---SPTDPFNRQTLTE-SMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---CSBCSSSCCBCCT-TSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---CCCCCCCCCCCCh-hhceECHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999999985 4799999999987 899999999999999999887
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.84 E-value=1.1e-19 Score=188.16 Aligned_cols=239 Identities=10% Similarity=0.030 Sum_probs=200.7
Q ss_pred HHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 160 LQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 160 ~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
+.++.|+..+.+ +..+..|++.|.+++.+++.++..+++.|++|.|+.+|.+.+. .+++.|+++|.+|+.+.+
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~----~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV----EVKEQAIWALGNVAGDST 205 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH----HHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH----HHHHHHHHHHHHHhCCCc
Confidence 446777877743 4788999999999998888899999999999999999987654 459999999999998766
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc-cchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA-SSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
..+..+... |+++.|+.+|.+ .+.+++..|+++|.+|+... ....... ..|+++.|+.+|.++ ++.++.
T Consensus 206 ~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~lL~~~--d~~v~~ 275 (530)
T 1wa5_B 206 DYRDYVLQC-NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSV-VSQALPTLAKLIYSM--DTETLV 275 (530)
T ss_dssp HHHHHHHHT-TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHH-HGGGHHHHHHHTTCC--CHHHHH
T ss_pred cchHHHHHc-CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHH-HHhHHHHHHHHHcCC--CHHHHH
Confidence 566655543 999999999997 88999999999999999876 3333333 358999999999988 899999
Q ss_pred HHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-HhhHHHHhhccccHHHHHHHHhcC
Q 041408 316 AALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 316 ~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
.|+++|.+|+... +....+++.|++|.|+.+|.+. +..++..|+.+|.+|+.. ++....++. .|+++.|+++|...
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~ 353 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSP 353 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCC
Confidence 9999999999754 5677888899999999999875 888999999999999975 444555544 68999999988887
Q ss_pred ChHHHHHHHHHHHHHhccCCC
Q 041408 394 SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+...++.|+++|.+|+.++..
T Consensus 354 ~~~vr~~A~~aL~~l~~~~~~ 374 (530)
T 1wa5_B 354 KENIKKEACWTISNITAGNTE 374 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH
Confidence 889999999999999986443
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.84 E-value=2.8e-19 Score=180.14 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=199.4
Q ss_pred HHHHHHHHHhc---ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 160 LQIIKLIKDIW---KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 160 ~~i~~lv~~l~---s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
+.++.|+..+. ++..+..|++.|.+++.++++++..+++.|++|.|+.+|.+.+. .+++.|+++|.+++.+.+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE----DVQEQAVWALGNIAGDST 139 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH----HHHHHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH----HHHHHHHHHHHHHccCCH
Confidence 45777777774 34788999999999998888888888899999999999987643 459999999999998776
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcc-cchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAA-SSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
..+..+... |+++.|+.+|++ +.+.+++..|+++|.+++... ........ .|++|.|+++|.++ ++.++.
T Consensus 140 ~~~~~~~~~-~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~ 210 (450)
T 2jdq_A 140 MCRDYVLDC-NILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLA 210 (450)
T ss_dssp HHHHHHHHT-TCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHH
Confidence 666655543 899999999985 368999999999999999765 22222222 58999999999988 899999
Q ss_pred HHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 316 AALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 316 ~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.|+++|.+|+... +++..+++.|++|.|+.+|.+. +..+++.|+.+|.+|+...+...+.+...|+++.|++++.+.+
T Consensus 211 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 289 (450)
T 2jdq_A 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK 289 (450)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC
Confidence 9999999999864 5777888999999999999875 8899999999999999865554443344689999999888878
Q ss_pred hHHHHHHHHHHHHHhccCCC
Q 041408 395 PAADDRAILILSLICKFSGN 414 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~~~ 414 (425)
...+..|+++|.+|+.+...
T Consensus 290 ~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 290 ESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHcCCHH
Confidence 89999999999999975433
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.84 E-value=8e-20 Score=170.17 Aligned_cols=200 Identities=13% Similarity=0.136 Sum_probs=167.7
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
...+.++..|.+.+.. .+..|++.|.++...++.....+.+. |+++.|+.+|++ .+++++..|+++|.+
T Consensus 12 ~~~~~~~~~L~s~~~~----~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~------~~~~v~~~a~~~L~~ 80 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ----EQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSS------PNEQILQEALWALSN 80 (252)
T ss_dssp CSHHHHHHHHHSSCSS----HHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 5688899999887654 49999999976544344444444433 999999999998 789999999999999
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCch-HHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNR-MIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
++..++.........|+++.|+++|.++ ++.+++.|+++|.+|+...+++ ..+++.|++|.|+++|.+. +..+++.
T Consensus 81 l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~ 157 (252)
T 4db8_A 81 IASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQE 157 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHH
Confidence 9986555555555679999999999998 9999999999999999998888 8899999999999999886 8899999
Q ss_pred HHHHHHHHhCCH-hhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 359 ILGILFHLCSCA-DGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 359 Al~~L~~L~~~~-e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
|+.+|.+|+... +.+..++ ..|+++.|++++...++..++.|+.+|.+|+.+++.
T Consensus 158 a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 158 ALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 999999999854 4555554 478999999988888889999999999999976554
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.83 E-value=2.4e-19 Score=184.53 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=197.0
Q ss_pred CCHHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 157 LSKLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 157 ~~~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
+..+.+++|+..++ ++..+..|+..|..++.+. .++..+.. .|+++.|+++|.+..+ ...+..|+.+|.+|+.
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~---~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTND---VETARCTAGTLHNLSH 89 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCC---HHHHHHHHHHHHHHHc
Confidence 33556888888885 4588999999999998654 46666665 4999999999976421 2458999999999998
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
+++....++. . |+++.|+.+|++ ++++++..|+++|.+++..+++......+.|++|.|+++|.++ +++.
T Consensus 90 ~~~~~~~i~~-~-g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~ 159 (529)
T 1jdh_A 90 HREGLLAIFK-S-GGIPALVKMLGS------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKF 159 (529)
T ss_dssp SHHHHHHHHH-T-THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHH
T ss_pred CchhHHHHHH-c-CCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHH
Confidence 8775555554 3 999999999998 7899999999999999998766565555679999999999988 8999
Q ss_pred HHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc
Q 041408 314 INAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 314 ~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~ 392 (425)
+..++.+|.+++. +++++..+++.|+++.|+.+|.+..+....+.++.+|.+|+.+++++..++. .|+++.|++++..
T Consensus 160 ~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~ 238 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTD 238 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhC
Confidence 9999999999997 4679999999999999999998874566778899999999999999998876 5788888887776
Q ss_pred CChHHHHHHHHHHHHHhccC
Q 041408 393 VSPAADDRAILILSLICKFS 412 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~~~~ 412 (425)
.+...++.++++|.+|+.+.
T Consensus 239 ~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 239 PSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHhcCC
Confidence 67777777777777777654
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.82 E-value=2.8e-19 Score=185.00 Aligned_cols=240 Identities=12% Similarity=0.058 Sum_probs=198.4
Q ss_pred HHHHHHHHHhcC--hhHHHHHHHHHHHHhhh-chhhhhHHhhcCcHHHHHHHHhhc-ccCCCcccHHHHHHHHHhcCCCh
Q 041408 160 LQIIKLIKDIWK--PELQTKTLIQLEVFAAE-NERNRKCMAEAGVPRAMLTYIVNC-CDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 160 ~~i~~lv~~l~s--~~~~~~Al~~L~~la~~-~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
..+..++..+.+ +..+..|+..|+.+... ...++..+++.|++|.|+.+|.+. +. .++..|+++|.+++.+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~----~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE----MLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH----HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH----HHHHHHHHHHHHHhCCC
Confidence 347788888854 57889999999988654 345667888999999999999875 32 45899999999999876
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+.....+.. .|+++.|+.+|++ .+++++..|+++|.+++...+.........|+++.|+.+|.+. ++.++.
T Consensus 163 ~~~~~~~~~-~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~ 233 (530)
T 1wa5_B 163 SAQTKVVVD-ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIR 233 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHH
Confidence 655555554 3999999999997 8999999999999999987654444444568999999999987 899999
Q ss_pred HHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-HhhHHHHhhccccHHHHHHHHhcC
Q 041408 316 AALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 316 ~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
.|+++|.+|+.+. .+.......|++|.|+.+|.+. +..++..|+.+|.+|+.. ++....++. .|+++.|+++|...
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~ 311 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHE 311 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCS
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCC
Confidence 9999999999865 5666677789999999999876 888999999999999985 455666654 68899999988887
Q ss_pred ChHHHHHHHHHHHHHhccCCC
Q 041408 394 SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+...+..|+.+|.+|+.+...
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHH
T ss_pred ChhhHHHHHHHHHHHHcCCHH
Confidence 889999999999999986543
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.82 E-value=3.4e-19 Score=188.98 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=200.7
Q ss_pred CCHHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhc-CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 157 LSKLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEA-GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 157 ~~~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~-G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
+..+.++.|+..+. ++..+..|+..|.+++.+. .++..+... |+++.|+++|.+.. +..++..|+.+|.+|+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~---~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTN---DVETARCTAGTLHNLSH 86 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHTT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCC---CHHHHHHHHHHHHHHhc
Confidence 34556888888885 4588999999999999755 467777654 99999999997642 12458999999999998
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
+.+....++. . |+++.|+.+|++ .++.++..|+++|.+++...+.......+.|+++.|+++|+++ +++.
T Consensus 87 ~~~~~~~i~~-~-g~i~~Lv~lL~~------~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~~ 156 (644)
T 2z6h_A 87 HREGLLAIFK-S-GGIPALVKMLGS------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKF 156 (644)
T ss_dssp SHHHHHHHHT-T-THHHHHHHHTTC------SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHH
T ss_pred ChhhHHHHHH-c-CCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC--CHHH
Confidence 8775554444 3 999999999998 7899999999999999998766665555679999999999998 8889
Q ss_pred HHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc
Q 041408 314 INAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 314 ~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~ 392 (425)
+..++.+|.+|+. +++++..+++.|+++.|+.+|.+.....+++.++.+|.+|+.+++++..++. .|+++.|++++..
T Consensus 157 ~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~ 235 (644)
T 2z6h_A 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhc
Confidence 9999999999997 6789999999999999999998764466788999999999999999999877 6789999998777
Q ss_pred CChHHHHHHHHHHHHHhccC
Q 041408 393 VSPAADDRAILILSLICKFS 412 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~~~~ 412 (425)
.+...++.++++|.+||.+.
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHhhcc
Confidence 77788888888888888754
No 35
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.82 E-value=7.5e-19 Score=180.82 Aligned_cols=238 Identities=11% Similarity=0.099 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+.++.|+..+. +++.+..|++.|.+++..+++++..+.+.|+++.|+.+|.+.... ..+++.|+.+|.+|+.++.
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~--~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSSST
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH--HHHHHHHHHHHHHHHcCCc
Confidence 556777777774 458889999999999988888999999999999999999764321 1458999999999987532
Q ss_pred H---HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 237 Y---MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 237 ~---~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
. .+..+... |+++.|+.+|++ +.+..++..++++|.+++.++.+...+ .+.|+++.|+++|.++ ++++
T Consensus 343 ~~~~~~~~i~~~-~~i~~L~~lL~~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~-~~~~~i~~L~~ll~~~--~~~v 413 (529)
T 1jdh_A 343 EAEMAQNAVRLH-YGLPVVVKLLHP-----PSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRA--HQDT 413 (529)
T ss_dssp THHHHHHHHHHT-TCHHHHHHTTST-----TCCHHHHHHHHHHHHHHTTSGGGHHHH-HHTTHHHHHHHHHHHH--HHHH
T ss_pred hHHHHHHHHHHc-CChhHHHHHhcc-----ccchHHHHHHHHHHHHHhcChhhhHHH-HHcCCHHHHHHHHHHH--hHHH
Confidence 1 23333333 899999999997 244789999999999999987776544 4569999999999876 6666
Q ss_pred HH----------------------HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh
Q 041408 314 IN----------------------AALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD 371 (425)
Q Consensus 314 ~~----------------------~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e 371 (425)
++ .++.+|++|+.+.+++..+.+.|++++|+.++.++ +..++..|+.+|.+|+..++
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chHHHHHHHHHHHHHhcCHH
Confidence 65 45566677888888899999999999999999986 88899999999999998888
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
++..+.+ .||++.|.+++.+.++..++.|.++|.+|+
T Consensus 493 ~~~~i~~-~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 493 AAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-cCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 8888755 788999999888888999999999998874
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.81 E-value=8.1e-19 Score=176.73 Aligned_cols=238 Identities=8% Similarity=0.119 Sum_probs=197.6
Q ss_pred HHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh-H
Q 041408 160 LQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS-E 236 (425)
Q Consensus 160 ~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~-~ 236 (425)
+.++.|+..+.+ +..+..|++.|.+++..++.++..+.+.|+++.|+.+|.+.. +..++..|+++|.+++.+. +
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~ 183 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---RLTMTRNAVWALSNLCRGKSP 183 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---CHHHHHHHHHHHHHHHCCSSS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCCC
Confidence 456777777754 578899999999999888889999999999999999997521 1245899999999998654 2
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
.....+.. ++++.|+.++++ ++.+++..++++|.+++.............|+++.|+++|.+. ++.++..
T Consensus 184 ~~~~~~~~--~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~ 253 (450)
T 2jdq_A 184 PPEFAKVS--PCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSP 253 (450)
T ss_dssp CCCGGGTG--GGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHH
T ss_pred CCCHHHHH--HHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHH
Confidence 22222222 899999999997 8899999999999999987655444444568999999999988 9999999
Q ss_pred HHHHHHHhCCCCC-chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 317 ALKLMLDACPSGR-NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 317 A~~aL~~L~~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
|+++|.+++...+ ....+++.|++|.|+.+|.+. +..++..|+.+|.+|+. ..+....++. .+++|.|+++|...+
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCC
Confidence 9999999998654 555678899999999999885 88999999999999997 5666666655 688999999998888
Q ss_pred hHHHHHHHHHHHHHhccC
Q 041408 395 PAADDRAILILSLICKFS 412 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~ 412 (425)
+..+..|+++|.+|+.++
T Consensus 332 ~~v~~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGG 349 (450)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999999863
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.81 E-value=2.6e-18 Score=182.13 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=202.4
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+.++.|+..+. +...+..|++.|.+++..++.++..+.+.|+++.|+.+|.+.... ..+++.|+.+|.+|+....
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~--~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSSST
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCc--HHHHHHHHHHHHHHhcCCc
Confidence 456777777774 457889999999999988889999999999999999999864321 1458999999999986422
Q ss_pred ---HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc-----
Q 041408 237 ---YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV----- 308 (425)
Q Consensus 237 ---~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----- 308 (425)
..+..+... |+++.|+.+|++ +.+..++..|+++|.|++..+.++..+ .+.|+++.|+++|.++.
T Consensus 340 ~~~~~q~~v~~~-~~l~~L~~lL~~-----~~~~~v~~~a~~~L~nLa~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~vr~ 412 (644)
T 2z6h_A 340 EAEMAQNAVRLH-YGLPVVVKLLHP-----PSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQR 412 (644)
T ss_dssp THHHHHHHHHHT-THHHHHHHTTST-----TCCHHHHHHHHHHHHHHTTSGGGHHHH-HHTTHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHc-cChHHHHHHhCc-----cCchHHHHHHHHHHHHHccCHHHHHHH-HHcCCHHHHHHHHhccchhhhh
Confidence 233333332 899999999997 345789999999999999988777444 45699999999998640
Q ss_pred ---------------CChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH
Q 041408 309 ---------------IAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGR 373 (425)
Q Consensus 309 ---------------~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r 373 (425)
.+.++++.++.+|++|+.+..++..+.+.|++|+|+++|.+. +..++..|+.+|.+|+..++.+
T Consensus 413 ~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~~ 491 (644)
T 2z6h_A 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA 491 (644)
T ss_dssp C----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHHH
T ss_pred HhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHH
Confidence 124567789999999999889999999999999999999886 8889999999999999988888
Q ss_pred HHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 374 AQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 374 ~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
..+.+ .|+++.|++++.+.++..++.|+.+|.+|+.+.+.
T Consensus 492 ~~i~~-~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 492 EAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHH-cCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcH
Confidence 87754 78899999988888999999999999999988754
No 38
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.80 E-value=1.9e-18 Score=187.03 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+.++.|+..+. +...+..|++.|.+++..++.++..+.+.|+++.|+.+|.+.... ..+++.|+++|++|+....
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSST
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH--HHHHHHHHHHHHHHHhcCc
Confidence 556777777774 457889999999999988889999999999999999999764321 1348999999999986432
Q ss_pred H---HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc-----
Q 041408 237 Y---MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV----- 308 (425)
Q Consensus 237 ~---~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----- 308 (425)
. .+..+... |+++.|+.+|.+ +.+..++..|+++|.||+..+.++.. ..+.|+++.|+++|.++.
T Consensus 476 ~~~~~~~~v~~~-~~l~~L~~lL~~-----~~~~~v~~~A~~aL~nLa~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~ 548 (780)
T 2z6g_A 476 DAEMAQNAVRLH-YGLPVVVKLLHP-----PSHWPLIKATVGLIRNLALCPANHAP-LREQGAIPRLVQLLVRAHQDTQR 548 (780)
T ss_dssp THHHHHHHHHHT-TCHHHHHHTTST-----TCCHHHHHHHHHHHHHHHSSHHHHHH-HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCHHHHHHHhcC-----CChHHHHHHHHHHHHHHhcCHHHHHH-HHHCCCHHHHHHHHHhcchhHHH
Confidence 2 22333333 889999999997 34468999999999999987777644 445689999999997641
Q ss_pred ---------------CChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH
Q 041408 309 ---------------IAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGR 373 (425)
Q Consensus 309 ---------------~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r 373 (425)
...++++.++.+|.+|+.+..++..+++.|+||+|+++|.+. +..++..|+.+|.+|+..++++
T Consensus 549 ~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~ 627 (780)
T 2z6g_A 549 RTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA 627 (780)
T ss_dssp TTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHHHH
Confidence 013467789999999999888999999999999999999986 8899999999999999988888
Q ss_pred HHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 374 AQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 374 ~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
..+.+ .||++.|++++.+.+..+++.|+.+|.+|+.+.+.
T Consensus 628 ~~i~~-~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 628 EAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 88755 78899999988888899999999999999997765
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=1.2e-18 Score=166.96 Aligned_cols=181 Identities=11% Similarity=0.012 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHH-HHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTW-VLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQN 299 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 299 (425)
+..|+..|.++..+.++...++.. |+++.|+. +|++ +++++|..|+++|.+++.+++..+..+.+.|++|+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~--G~l~~Lv~~lL~s------~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~ 128 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQL--SGMHLLVGRYLEA------GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHTTTTC------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHc--CCHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 788899999999877766666543 89999999 9998 89999999999999999988766666667799999
Q ss_pred HHHHhccccCChHHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHh
Q 041408 300 IIRVLKQRVIAQQGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFL 377 (425)
Q Consensus 300 Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~ 377 (425)
|+.+|++. .++.+++.|+++|.||+.+ +.+...++++|++|+|+.+|.++ +..++..|+++|.+|+. .++.+..++
T Consensus 129 Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 129 LLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999853 2688999999999999975 45677889999999999999986 89999999999999987 566777776
Q ss_pred hccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 378 SHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 378 ~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
+ .|+++.|+++|...+...++.|+.+|.+|+...
T Consensus 207 ~-~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 207 S-MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp H-TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred H-cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6 789999999888888899999999999999873
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.78 E-value=5.6e-18 Score=183.35 Aligned_cols=239 Identities=13% Similarity=0.126 Sum_probs=197.2
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhc-CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEA-GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~-G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
.+.++.|+..+. ++..+..|+..|.+++.. ..++..+.+. |+++.|+.+|.+... ..++..|+.+|.+|+.+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d---~~vr~~Aa~aL~~Ls~~~ 224 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTND---VETARCTSGTLHNLSHHR 224 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHTSH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCC---HHHHHHHHHHHHHHhCCc
Confidence 455777777774 458899999999999865 4566677754 899999999976521 245899999999999887
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+....++. . |+|+.|+.+|++ ++..++..|+++|.+|+...++........|+++.|+++|.++ +..+++
T Consensus 225 ~~~~~i~~-~-g~I~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~ 294 (780)
T 2z6g_A 225 EGLLAIFK-S-GGIPALVNMLGS------PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLA 294 (780)
T ss_dssp HHHHHHHH-T-THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHH
T ss_pred hhHHHHHH-c-CCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHH
Confidence 76444444 3 999999999998 7899999999999999998776666666679999999999988 889999
Q ss_pred HHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC
Q 041408 316 AALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS 394 (425)
Q Consensus 316 ~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s 394 (425)
.|+.+|.+|+. +++++..+++.|+++.|+.+|.+.+.....+.++.+|.+|+.+.+++..++. .|+++.|++++...+
T Consensus 295 ~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~ 373 (780)
T 2z6g_A 295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPS 373 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSC
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCc
Confidence 99999999997 5689999999999999999998764456778899999999999989988876 678899988777667
Q ss_pred hHHHHHHHHHHHHHhccC
Q 041408 395 PAADDRAILILSLICKFS 412 (425)
Q Consensus 395 ~~~~e~a~~~L~~l~~~~ 412 (425)
...++.|+++|.+|+...
T Consensus 374 ~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 374 QRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccc
Confidence 777778888888887654
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.77 E-value=4.1e-19 Score=168.99 Aligned_cols=92 Identities=33% Similarity=0.571 Sum_probs=79.3
Q ss_pred HHHHHHHhhhhcccc--CCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 50 QHIIILSLLFQMDDH--QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
........+|+.+.. ...++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||.|+.+++. .+++|
T Consensus 184 ~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~~-~~l~~ 260 (281)
T 2c2l_A 184 KYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--GHFNPVTRSPLTQ-EQLIP 260 (281)
T ss_dssp HHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT--CSSCTTTCCCCCG-GGCEE
T ss_pred HHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC--CCCCcCCCCCCch-hcCcc
Confidence 334455566654443 466899999999999999999999999999999999999976 3569999999987 89999
Q ss_pred cHHHHHHHHHHHHcCCC
Q 041408 128 NHTLRRLIQAWCADNSA 144 (425)
Q Consensus 128 n~~l~~~I~~~~~~n~~ 144 (425)
|..++++|+.|+..|+|
T Consensus 261 n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 261 NLAMKEVIDAFISENGW 277 (281)
T ss_dssp CHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 99999999999999987
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.77 E-value=3.6e-19 Score=136.00 Aligned_cols=75 Identities=51% Similarity=0.967 Sum_probs=69.5
Q ss_pred CCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
+.++|++|.||||+++|.|||+++|||+||+.||.+|+..+ ..+||.|+.++.. .++.||..++++|+.|...|+
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--HKTCPKSQETLLH-AGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--CCBCTTTCCBCSS-CCCEECTTTHHHHHHHHHHSC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--cCCCCCCcCCCCh-hhCccCHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999999999999864 4799999999986 889999999999999999887
No 43
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-19 Score=138.40 Aligned_cols=76 Identities=29% Similarity=0.471 Sum_probs=65.7
Q ss_pred CCCCcccCcCCccCCCCceecC-CCccccHHHHHHHHHcC---CCCCCCCC--CCCC-CCCCCCCCccHHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQG---NNNAECPV--TKQP-LPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~---~~~~~cP~--~~~~-l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ++..+||. |+.. +.. .+++||..|+++|+.|..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHHH
Confidence 4578999999999999999996 99999999999999863 12469999 5544 776 899999999999999998
Q ss_pred cCCC
Q 041408 141 DNSA 144 (425)
Q Consensus 141 ~n~~ 144 (425)
.+..
T Consensus 82 ~~~r 85 (94)
T 2yu4_A 82 KRHR 85 (94)
T ss_dssp TCCS
T ss_pred Hhcc
Confidence 8763
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.9e-17 Score=169.59 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=163.6
Q ss_pred hhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHH---
Q 041408 192 NRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKE--- 268 (425)
Q Consensus 192 ~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~--- 268 (425)
+++.+.++|+||.|+.++++.+.. .++.|+++|.+|+.+.+....++.. |+++.|+.+|.+ ++..
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~----~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s------~~~~~~~ 516 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPN----CKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLAN------KQDIGEP 516 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTC------C---CCH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhc------CCCcchH
Confidence 678889999999999999886543 4999999999999886665555553 999999999987 4433
Q ss_pred HHHHHHHHHHHHHhcccchhHhhc--chhHHHHHHHHhccccCCh------------HHHHHHHHHHHHhCCCCCc----
Q 041408 269 IKSHALRILKNIIQAASSKFLQRL--KPQIFQNIIRVLKQRVIAQ------------QGINAALKLMLDACPSGRN---- 330 (425)
Q Consensus 269 ~~~~A~~~L~~L~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~~------------~~~~~A~~aL~~L~~~~~n---- 330 (425)
.+..|+.+|.+++...+....+.. ..|+|++|+.+|..++... ..+..|+.||.||+..++|
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 789999999999976554444321 1389999999998321111 2377999999999998743
Q ss_pred -hHHHHhh-CchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH-HHHhhcc-----ccHHHHHHHHhcCChHHHHHHH
Q 041408 331 -RMIMVES-GAVFELIELELTASEKKTTELILGILFHLCSCADGR-AQFLSHR-----AAIAVVTKRIMQVSPAADDRAI 402 (425)
Q Consensus 331 -~~~iv~~-G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r-~~~~~~~-----g~i~~Lv~ll~~~s~~~~e~a~ 402 (425)
+..+++. |++|.|+++|.++ +..++..|+.+++||+.+++++ .++.... ++++.||.++...+...|+.|.
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAa 675 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVA 675 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHH
Confidence 7888985 9999999999986 8899999999999999999886 3554322 2488999988777889999999
Q ss_pred HHHHHHhcc
Q 041408 403 LILSLICKF 411 (425)
Q Consensus 403 ~~L~~l~~~ 411 (425)
++|.+++..
T Consensus 676 gALAnLts~ 684 (778)
T 3opb_A 676 AIFANIATT 684 (778)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhcCC
Confidence 999999654
No 45
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.2e-16 Score=163.43 Aligned_cols=246 Identities=11% Similarity=0.038 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
.+.++.|+..++ ++..+..|++.|.+++ .++.+|..+++.|+++.|+.+|.+..... ...++.|+.+|.++....+
T Consensus 456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~-~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 456 TELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIG-EPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---C-CHHHHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHhcCC
Confidence 345666777663 4688999999999998 56899999999999999999998764321 1248899999999874332
Q ss_pred HHHhhhh--chhchHHHHHHHHcccccccc--------CCHHHHHHHHHHHHHHHhcccc-----hhHhhcchhHHHHHH
Q 041408 237 YMKLSAF--EIDKIVESFTWVLALDDESIE--------NHKEIKSHALRILKNIIQAASS-----KFLQRLKPQIFQNII 301 (425)
Q Consensus 237 ~~~~~v~--~~~g~i~~Lv~lL~~~~~~~~--------~~~~~~~~A~~~L~~L~~~~~~-----~~~~~~~~g~i~~Lv 301 (425)
.. .++. ...|+|+.|+.+|....+..+ .+.-.+-+|+.+|.||+..+++ +..+....|+++.|.
T Consensus 534 p~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 534 PG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 21 1222 112899999999983100000 0112367999999999998743 444444358999999
Q ss_pred HHhccccCChHHHHHHHHHHHHhCCCCCch-HHHHh------hCchHHHHHHhhccCCcchHHHHHHHHHHHh-CCHhhH
Q 041408 302 RVLKQRVIAQQGINAALKLMLDACPSGRNR-MIMVE------SGAVFELIELELTASEKKTTELILGILFHLC-SCADGR 373 (425)
Q Consensus 302 ~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~-~~iv~------~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~-~~~e~r 373 (425)
.+|.+. +..++++|+++|+||+.+++.+ ..+.+ .+.+++||.++.++ +.+++..|.++|++++ ..+...
T Consensus 613 ~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 613 NLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHH
Confidence 999988 8999999999999999988765 34432 23488999999886 8999999999999996 577788
Q ss_pred HHHhhccccHHHHHHHHhc--CChHHHHHHHHHHHHHhc
Q 041408 374 AQFLSHRAAIAVVTKRIMQ--VSPAADDRAILILSLICK 410 (425)
Q Consensus 374 ~~~~~~~g~i~~Lv~ll~~--~s~~~~e~a~~~L~~l~~ 410 (425)
..+++..+|+..+++++.. .+...+.+++.+|++|+.
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 8888877899999998887 678999999999999996
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=124.52 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=69.1
Q ss_pred CCCCCCcccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCCC
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNSA 144 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~~ 144 (425)
..+++++|.||||.++|.|||+++ |||+||+.||.+|+...+ ...||.|+.++.....+.+|..++++|+.|...++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-TCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-CCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 447899999999999999999999 999999999999998653 479999999974337899999999999999988764
No 47
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.64 E-value=7.2e-17 Score=171.62 Aligned_cols=77 Identities=31% Similarity=0.525 Sum_probs=70.8
Q ss_pred ccCCCCCCCcccCcCCccCCCCceecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 63 DHQDIEIPEYFICPISLQIMKDPVTAITG-ITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 63 ~~~~~~~p~~~~Cpi~~~~m~dPV~~~~g-~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
+....++|++|+|||++++|+|||++|+| +||+|.+|++|+..+ .+||.|+++++. .+++||++||+.|++|+..
T Consensus 882 e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~---~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 882 DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD---STDPFNRMPLKL-EDVTPNEELRQKILCFKKQ 957 (968)
T ss_dssp HHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---CBCTTTCCBCCG-GGCEECHHHHHHHHHHHHH
T ss_pred hccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC---CCCCCCCCCCCc-ccccccHHHHHHHHHHHHH
Confidence 33457999999999999999999999997 799999999999874 699999999987 8999999999999999998
Q ss_pred CC
Q 041408 142 NS 143 (425)
Q Consensus 142 n~ 143 (425)
++
T Consensus 958 ~~ 959 (968)
T 3m62_A 958 KK 959 (968)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.59 E-value=2.9e-16 Score=113.25 Aligned_cols=54 Identities=19% Similarity=0.422 Sum_probs=49.2
Q ss_pred cccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccH
Q 041408 72 YFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNH 129 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~ 129 (425)
.|.||||+++|+|||++ +|||+|||.+|++|+..+ .+||.|++++.. .+++||.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~---~~cP~t~~~L~~-~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSI-EEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH---SBCTTTCCBCCG-GGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC---CCCcCCcCCCCh-hhcEECc
Confidence 58999999999999999 899999999999999875 469999999987 8899875
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=122.86 Aligned_cols=72 Identities=14% Similarity=0.326 Sum_probs=63.7
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
.+++++.||||.++|.+||+++|||+||+.||..|+..+ ...||.|+.++.....+.+|..+.++++.|.-.
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--cCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 346779999999999999999999999999999999854 469999999997546799999999999988653
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.9e-15 Score=134.38 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=63.6
Q ss_pred CCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCC--CCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 69 IPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPV--TKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~--~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
...+|+||||+++|+|||++ .|||+|||.||.+||..++ ...||+ |++++.. .++.||..|+++|+.|...
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-TRDCPQAACSQVVSM-RDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-CEECSGGGCSCEECG-GGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-CCCCCcccccCcCch-hhCCcCHHHHHHHHHHHHH
Confidence 46779999999999999985 9999999999999998643 568999 9999987 8999999999999999764
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.9e-14 Score=123.57 Aligned_cols=71 Identities=17% Similarity=0.365 Sum_probs=63.4
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
.+++++.||||.++|.+||+++|||+||+.||.+|+..+ ...||.|+.++.....+.+|..++++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--VFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--CCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999875 46899999999872389999999999998864
No 52
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.44 E-value=3.8e-14 Score=113.07 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=64.0
Q ss_pred CCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 69 IPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
+++++.||||.+.|.+||++ +|||+||+.||.+|+..+ ..||.|+.++.. .++.+|..++++++.|.....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPTCCVTVTE-PDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC---CBCTTTCCBCCG-GGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC---CCCCCCCCcCCh-hhCCcCHHHHHHHHHHHHHHH
Confidence 45678999999999999988 899999999999999863 799999999986 789999999999999987654
No 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=103.43 Aligned_cols=62 Identities=29% Similarity=0.427 Sum_probs=52.4
Q ss_pred CCCCCCcccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 66 DIEIPEYFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
..++++++.||||+++|.+||+++ |||+||+.||.+|+...+ ...||.|+.++...+.+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-SSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-CCcCCCCCCcCCCccccccC
Confidence 446889999999999999999999 999999999999998643 46899999986543555555
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=4.9e-14 Score=108.92 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=59.4
Q ss_pred cccCCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcC---CCCCCCCCCCCCCCCCCCCCccHHHHHH
Q 041408 62 DDHQDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQG---NNNAECPVTKQPLPKDLDLTPNHTLRRL 134 (425)
Q Consensus 62 ~~~~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~---~~~~~cP~~~~~l~~~~~l~pn~~l~~~ 134 (425)
++....++.+++.||||.+.|.+|++++|||+||+.||.+|+... ++...||.|+.++.. .++.+|..++++
T Consensus 9 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecw_A 9 ASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSS
T ss_pred hHHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHh
Confidence 333445688899999999999999999999999999999999873 124789999999986 788888765443
No 55
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.40 E-value=1.5e-13 Score=111.50 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=60.9
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDL----DLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~----~l~pn~~l~~~I~~~~~ 140 (425)
++++++.||||.++|.+||++ +|||+||+.||.+|+..+ ..||.|+.++.. . .+.+|..+.++++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---KYCPICDVQVHK-TRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC---SBCTTTCCBSCS-SCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC---CcCcCCCccccc-cCcccccCcCHHHHHHHHHHhh
Confidence 467889999999999999998 999999999999999874 789999999875 4 67889999999887754
No 56
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=2.8e-13 Score=114.81 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=53.9
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCA 140 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~ 140 (425)
+.+++.||||.+.|.|||+++|||+||+.||.+|+... .+||.|+.++.. . .+|..+...|..+..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~--~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK---IECPICRKDIKS-K--TYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC---SBCTTTCCBCCC-E--EECHHHHHHHHHHHT
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC---CcCCCCCCcCCC-C--CCccchhHHHHHHHH
Confidence 34578999999999999999999999999999999864 789999999854 2 356666666666543
No 57
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-14 Score=110.48 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=56.5
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcC----CCCCCCCCCCCCCCCCCCCCccHHHHH
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQG----NNNAECPVTKQPLPKDLDLTPNHTLRR 133 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~----~~~~~cP~~~~~l~~~~~l~pn~~l~~ 133 (425)
..+++++.||||++.|.+|++++|||+||+.||.+|+... ++...||.|+.++.. .++.+|..+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHH
Confidence 4678899999999999999999999999999999999863 124789999999986 77888876544
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=108.89 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=63.5
Q ss_pred CCCcccCcCCccCCCCcee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcCC
Q 041408 69 IPEYFICPISLQIMKDPVT-AITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADNS 143 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~-~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n~ 143 (425)
+.+++.||||++.|.+||+ ++|||+||+.||.+|+... ...||.|+.++.. .++.+|..+..+++.......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQL-RELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCG-GGCEECTTHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCH-HHhHhhHHHHHHHHHHHHHHH
Confidence 5677899999999999999 8999999999999999985 2689999999987 889999988888887766544
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=8.6e-14 Score=107.51 Aligned_cols=68 Identities=18% Similarity=0.428 Sum_probs=57.7
Q ss_pred CCCCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHc---CCCCCCCCCCCCCCCCCCCCCccHHHHH
Q 041408 65 QDIEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ---GNNNAECPVTKQPLPKDLDLTPNHTLRR 133 (425)
Q Consensus 65 ~~~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~---~~~~~~cP~~~~~l~~~~~l~pn~~l~~ 133 (425)
...++++++.||||.+.+.+|++++|||+||+.||.+|+.. .++...||.|+.++.. .++.+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHH
Confidence 34467889999999999999999999999999999999986 1125799999999986 78888876544
No 60
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=2.5e-13 Score=110.76 Aligned_cols=70 Identities=21% Similarity=0.467 Sum_probs=58.7
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWC 139 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~ 139 (425)
+.+.+.||||.+.|.+||+++|||+||+.||.+|+....+...||.|+.++.. ..+.+|..+.++++.+.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHH
Confidence 34577899999999999999999999999999999865334689999999987 78888876666666554
No 61
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=97.67 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 67 IEIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
.++.+++.||||++.|.|||++ +|||+||+.||.+|+... ..||.|+.++.. .++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---NRCPKCNIVVHQ-TQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC---SSCTTTCCCCCS-SCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC---CcCCCcCcccCc-cccccc
Confidence 3678899999999999999997 999999999999999873 799999999976 666665
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=102.19 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHH
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRL 134 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~ 134 (425)
.+..+.+.||||.+.|.+||+++|||+||+.||.+|+... ..||.|+.++. ..+.+|..+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~--~~~~~~~~l~~~ 72 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---PRCYICDQPTG--GIFNPAKELMAK 72 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC---SBCSSSCCBCC--SCCEECHHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC---CcCCCcCcccc--ccCCcHHHHHHH
Confidence 3567789999999999999999999999999999999863 79999999985 567788555433
No 63
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.35 E-value=3.7e-13 Score=117.70 Aligned_cols=72 Identities=25% Similarity=0.451 Sum_probs=62.3
Q ss_pred CCCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 68 EIPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
.+.+++.||||++.|.+||++ +|||+||+.||.+|+..+ ...||.|+.++.....+.+|..+.++|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--NKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 456788999999999999987 999999999999999974 478999999985446789999999999988553
No 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=5e-13 Score=110.12 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=63.9
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHc
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCAD 141 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~ 141 (425)
..++++|.||||.++|.+||+++|||+||+.||.+|+..+ ...||.|+.++.. .++.+|..+.+.|..+.-.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~ 84 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLE-NQLFPDNFAKREILSLMVK 84 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC--CCCCCCCCCCcCH-HhcccCHHHHHHHccceeE
Confidence 3688899999999999999999999999999999999875 3589999999987 7889999999988876443
No 65
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=2.4e-13 Score=111.85 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=61.2
Q ss_pred CCCcccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHcC
Q 041408 69 IPEYFICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWCADN 142 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~~~n 142 (425)
+.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++.. .++.+|..+.++++.+....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~-~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWI-QDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSC-SSCCCCHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCcc-ccccccHHHHHHHHHHHHHH
Confidence 45679999999999999999 9999999999999986 479999999976 88999999999999887653
No 66
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=95.58 Aligned_cols=52 Identities=12% Similarity=0.319 Sum_probs=47.3
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+++++.||||.+.|++||+++|||+||+.||.+|+..+ ...||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS--SPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS--SCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC--cCCCCCCCcCCCh
Confidence 578899999999999999999999999999999999643 4789999999875
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.32 E-value=2.9e-11 Score=124.48 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHhcC---hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 157 LSKLQIIKLIKDIWK---PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 157 ~~~~~i~~lv~~l~s---~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
-..+.|..|+.++++ .+.++.|+..|+.++++ +|..+. +++++.|+..|+....+. +....++.+|.++..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~--e~v~~~LetL~~l~~ 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDS--EIIGYALDTLYNIIS 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCH--HHHHHHHHHHHHHHC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccH--HHHHHHHHHHHHHhC
Confidence 336778899999854 38999999999999864 454544 678999999998765432 446778888877443
Q ss_pred -ChHH----------------HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh--Hhhcch
Q 041408 234 -TSEY----------------MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF--LQRLKP 294 (425)
Q Consensus 234 -~~~~----------------~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~--~~~~~~ 294 (425)
+++. ....+...++.|+.|+.+|++ .+..+|-.++.+|..|+.....+. .+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p 165 (651)
T 3grl_A 92 NDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP 165 (651)
T ss_dssp CC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred CCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence 2211 112222234789999999997 899999999999999998877633 344356
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh-hCchHHHHHHhhccC---CcchHHHHHHHHHHHhC-C
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE-SGAVFELIELELTAS---EKKTTELILGILFHLCS-C 369 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~-~G~v~~Lv~lL~~~~---~~~~~e~Al~~L~~L~~-~ 369 (425)
++|+.|+.+|.+. ....|..|+..|.+|+.+..+..+++. .|+++.|++++..++ ...+.+.++.+|.+|.. +
T Consensus 166 ~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 166 MGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp THHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 8999999999988 889999999999999998777666666 599999999998752 23678899999999998 5
Q ss_pred HhhHHHHhhccccHHHHHHHHhcCCh------HHHHH---HHHHHHHHhccCC
Q 041408 370 ADGRAQFLSHRAAIAVVTKRIMQVSP------AADDR---AILILSLICKFSG 413 (425)
Q Consensus 370 ~e~r~~~~~~~g~i~~Lv~ll~~~s~------~~~e~---a~~~L~~l~~~~~ 413 (425)
..++..+.+ .++++.|..++..... ..-.+ ++.++..|+..+.
T Consensus 244 ~sNQ~~FrE-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 244 NSNQNFFKE-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHHHHH-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHH-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 568888866 6789999986643211 11122 5666666666543
No 68
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.31 E-value=4.2e-13 Score=110.07 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC------CCCCCccHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK------DLDLTPNHTLRRLIQAWC 139 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~------~~~l~pn~~l~~~I~~~~ 139 (425)
...++|.||||.+.|.+||+++|||+||+.||.+|+..+ ...||.|+.++.. ...+..|..+.+.|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--cCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 456689999999999999999999999999999999764 4789999998852 145678889989888875
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=96.48 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=48.3
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.++++++.||||.+.|.+||+++|||+||+.||.+|+...++...||.|+.++..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3678899999999999999999999999999999999742225789999999865
No 70
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.28 E-value=8.8e-11 Score=120.94 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhc----ChhHHHHHHHHHHHHhhhchh-----------------hhhH-HhhcCcHHHHHHHHhhcccCC
Q 041408 159 KLQIIKLIKDIW----KPELQTKTLIQLEVFAAENER-----------------NRKC-MAEAGVPRAMLTYIVNCCDKN 216 (425)
Q Consensus 159 ~~~i~~lv~~l~----s~~~~~~Al~~L~~la~~~~~-----------------~r~~-i~~~G~i~~Lv~lL~s~~~~~ 216 (425)
..+++.|+.-|. +.+....++.+|.++...++. +.+. +.+.+.|+.|+.+|.+.+.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df-- 136 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF-- 136 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--
Confidence 556888888873 346677788888665433221 2223 3356899999999976653
Q ss_pred CcccHHHHHHHHHhcCCChHH-HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchh
Q 041408 217 QVGGLEGALSILHFFKITSEY-MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQ 295 (425)
Q Consensus 217 ~~~~~~~Al~~L~~L~~~~~~-~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g 295 (425)
..+..++..|..|+...+. .++.+...+++|+.|+.+|+. ...-+|.+|+.+|.+|+..+.+.+.++.-.|
T Consensus 137 --~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d------~rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 137 --HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD------SREVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp --HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC------chHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3488999999988765544 455555457999999999996 7788999999999999999999888877779
Q ss_pred HHHHHHHHhccc--cCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCc------c--hHHHHHHHHH
Q 041408 296 IFQNIIRVLKQR--VIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEK------K--TTELILGILF 364 (425)
Q Consensus 296 ~i~~Lv~lL~~~--~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~------~--~~e~Al~~L~ 364 (425)
+++.|++++... .....+.+.++.+|.||.. +..|+..+.+.|.+|.|..+|..+.+. . -.-.++.++.
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 999999999764 1123678899999999998 557999999999999999999754221 1 1223677778
Q ss_pred HHhCCH-------hhHHHHhhccccHHHHHHHHhcC--ChHHHHHHHHHHHHHhccCCC
Q 041408 365 HLCSCA-------DGRAQFLSHRAAIAVVTKRIMQV--SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 365 ~L~~~~-------e~r~~~~~~~g~i~~Lv~ll~~~--s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.|+... .++.++.. .|+++.|+++++.. +...+..|+.++..+.++.+.
T Consensus 289 lLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 289 VLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 787642 35666655 78899999988765 567888899999998887444
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.6e-12 Score=91.58 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=42.8
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
.+.+++.||||.+.|.+||+++|||+||+.||.+|+...++...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 678899999999999999999999999999999999853225789987
No 72
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.25 E-value=2.1e-12 Score=106.01 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=56.6
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC-ccHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLT-PNHTLRRLIQAW 138 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~-pn~~l~~~I~~~ 138 (425)
++++++.||||.++|.|||+++|||+||+.||.+|+... ...||.|+.++.. .++. ++..+.+++..+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~-~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM--GSYCPSCRYPCFP-TDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG-GGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCH-hhccccHHHHHHHHHHh
Confidence 456789999999999999999999999999999999874 3789999999976 5554 556666666554
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.22 E-value=5.1e-12 Score=110.93 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=62.0
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQAWC 139 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~~~ 139 (425)
.++++|.||||.++|.+||+++|||+||+.||.+|+..+ ..+||.|+.++.. .++.++..+.+.|..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLE-NQLFPDNFAKREILSLM 82 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG-GGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC--CCCCCCCccCcch-hhhhhhHHHHHHHhhcc
Confidence 688999999999999999999999999999999999875 3599999999987 78889999988887643
No 74
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.20 E-value=1.7e-12 Score=110.09 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC--------CCCCCccHHHHHHHHHH
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK--------DLDLTPNHTLRRLIQAW 138 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~--------~~~l~pn~~l~~~I~~~ 138 (425)
.++++|.||||.++|.+||+++|||+||+.||.+|+..+ ...||.|+.++.. ...+.++..+++.|...
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--PQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--CCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 578899999999999999999999999999999999865 4689999987532 12456888887777643
No 75
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=8.6e-12 Score=91.18 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=47.7
Q ss_pred CcccCcCCcc-CCCCc----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 71 EYFICPISLQ-IMKDP----VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 71 ~~~~Cpi~~~-~m~dP----V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
+++.||||.+ .+.+| ++++|||+||+.||.+|+..+ ...||.|+.++.. .++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~-~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTPLRK-SNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--SSSCTTTCCCCSS-CCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--CCcCCCCCCcccc-ccceee
Confidence 5789999999 99999 578999999999999999865 4789999999976 666654
No 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=93.61 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=48.9
Q ss_pred CCCCCCcccCcCCccCCCC----ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMKD----PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~d----PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
...+.+++.||||.+.|.+ |++++|||+||+.||.+|+....+...||.|+.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3467888999999999999 9999999999999999999875324789999998764
No 77
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=1.5e-11 Score=91.39 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=50.5
Q ss_pred CCCCCcccCcCCccCCCCc-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 67 IEIPEYFICPISLQIMKDP-------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dP-------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
....+++.||||.+.|.+| ++++|||+||+.||.+|+... .+||.|+.++.. .++.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH-KRYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCCBCCC-CSCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---CCCCCCCCccCh-hheeec
Confidence 3567789999999999999 889999999999999999874 699999999976 666664
No 78
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=85.66 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=42.4
Q ss_pred CCCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 041408 67 IEIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVT 115 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~ 115 (425)
..+.+++.||||++.+.+||+++|||+||+.||.+|+...++...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3577889999999999999999999999999999998752225789987
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=89.98 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=45.7
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
...+++.||||++.|.+||+++|||+||+.||.+|+..+ ..||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---KRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS---SBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC---CcCcCcCchhCH
Confidence 456779999999999999999999999999999999864 789999998854
No 80
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.12 E-value=4.6e-09 Score=94.57 Aligned_cols=188 Identities=14% Similarity=0.017 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
...+..|+..+.+ ...+..|+..|..+.. .++++.|+.+|.+.+. .++..|+.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~----~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA----WVRRAAADALGQIGD--- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCH----HHHHHHHHHHHHHCC---
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCH----HHHHHHHHHHHhhCC---
Confidence 5567888888855 4778888888876532 3678999999976543 458889999987642
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
++.++.|+.+|++ .++.+|..|+.+|..+.. .+.++.|+.+|.++ ++.++..
T Consensus 80 ---------~~~~~~L~~~l~~------~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~ 131 (211)
T 3ltm_A 80 ---------ERAVEPLIKALKD------EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE--DWFVRIA 131 (211)
T ss_dssp ---------GGGHHHHHHHTTC------SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS--SHHHHHH
T ss_pred ---------HHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC--CHHHHHH
Confidence 2688899999987 899999999999987642 35789999999988 9999999
Q ss_pred HHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 317 ALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 317 A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
|+.+|..+.. ..+++.|+.+|.+. ++.++..|+.+|..+.. ..+++.|.+++...++.
T Consensus 132 a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 189 (211)
T 3ltm_A 132 AAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF 189 (211)
T ss_dssp HHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence 9999999853 35889999999775 88899999999998843 34577888888888899
Q ss_pred HHHHHHHHHHHHhccCCC
Q 041408 397 ADDRAILILSLICKFSGN 414 (425)
Q Consensus 397 ~~e~a~~~L~~l~~~~~~ 414 (425)
++..|..+|..+..+.++
T Consensus 190 vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhcCCCCCC
Confidence 999999999998877654
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.11 E-value=8.5e-09 Score=92.03 Aligned_cols=187 Identities=14% Similarity=-0.001 Sum_probs=149.9
Q ss_pred CCCCHHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcC
Q 041408 155 APLSKLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFK 232 (425)
Q Consensus 155 ~~~~~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~ 232 (425)
++........++..+.+ +..+..|+..|..+.. .++++.|+.+|.+.+. .++..|+.+|..+.
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~----~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA----WVRRAAADALGQIG 73 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH----HHHHHHHHHHHHHC
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCH----HHHHHHHHHHHhhC
Confidence 34557788889999865 4788889998876642 3578999999976543 44888888887764
Q ss_pred CChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChH
Q 041408 233 ITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 233 ~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
. ++.++.|+.+|.+ .++.+|..|+++|..+.. ..+++.|+.+|.+. ++.
T Consensus 74 ~------------~~~~~~L~~~l~d------~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~--~~~ 122 (201)
T 3ltj_A 74 D------------ERAVEPLIKALKD------EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE--DWF 122 (201)
T ss_dssp C------------GGGHHHHHHHTTC------SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS--SHH
T ss_pred C------------HHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC--CHH
Confidence 2 2578899999987 899999999999987632 35789999999988 999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc
Q 041408 313 GINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~ 392 (425)
++..|+++|..+.. .++++.|+.+|.+. +..++..|+.+|..+.. ..+++.|.+++..
T Consensus 123 vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d 180 (201)
T 3ltj_A 123 VRIAAAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAET 180 (201)
T ss_dssp HHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC
Confidence 99999999999853 46899999999875 88899999999998832 2357888888877
Q ss_pred CChHHHHHHHHHHHHHh
Q 041408 393 VSPAADDRAILILSLIC 409 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~ 409 (425)
.+..++..|+.+|..+.
T Consensus 181 ~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHK 197 (201)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78899999999998764
No 82
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.6e-11 Score=86.69 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=46.9
Q ss_pred CCCCCCcccCcCCccCCCCc-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMKDP-------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~dP-------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
...+++.+.||||++.|.+| ++++|||+|++.||.+|+... .+||.|+.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC---SSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC---CCCCCCCCccCc
Confidence 34577889999999999998 889999999999999999874 799999998753
No 83
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.05 E-value=1.8e-10 Score=87.09 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCCCCcccCcCCccCC--CCceecC--CCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIM--KDPVTAI--TGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m--~dPV~~~--~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..++.+++.||||.+.+ .||++.+ |||+||+.||.++|..+ ...||.||+++..
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYPE 62 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--CSBCTTTCCBCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--CCCCCCCCCccCC
Confidence 34578899999999998 4677776 99999999999999764 5799999999865
No 84
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.04 E-value=6.1e-11 Score=86.14 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=46.9
Q ss_pred CcccCcCCccCCCCc-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 71 EYFICPISLQIMKDP-------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP-------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
+++.||||.+.+.+| ++++|||+|++.||.+|+... .+||.|+.++.. .++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH-KRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---SBCTTTCCBCTT-TCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---CCCCCCCccCCc-cceeee
Confidence 468899999999998 788999999999999999874 799999999976 555543
No 85
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=2.6e-10 Score=86.35 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=48.3
Q ss_pred CCCCCcccCcCCccCCCCc---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 67 IEIPEYFICPISLQIMKDP---VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dP---V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
....+++.||||++.|.+| ++++|||+|++.||.+|+... .+||.|+.++.. ..+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH---DSCPVCRKSLTG-QNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT---CSCTTTCCCCCC-SCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC---CcCcCcCCccCC-cccCCC
Confidence 3566789999999999877 356999999999999999764 799999999976 555554
No 86
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.92 E-value=8.3e-10 Score=81.18 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=42.5
Q ss_pred CcccCcCCccCCCCc-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDP-VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP-V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+..||||.+.+.+| ++++|||+||+.||.+|+..+ .+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS---CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc---CcCcCCChhhHh
Confidence 457899999999998 678999999999999999874 799999988753
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.90 E-value=8.8e-08 Score=89.98 Aligned_cols=193 Identities=10% Similarity=-0.029 Sum_probs=114.3
Q ss_pred HHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHH
Q 041408 162 IIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMK 239 (425)
Q Consensus 162 i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~ 239 (425)
+..|+..+.+ +..+..|++.|..+.. .++++.|+.+|.+.+. .++..|+.+|..+......
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~----~vR~~A~~aL~~l~~~~~~-- 87 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY----IRRDIGAFILGQIKICKKC-- 87 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSH----HHHHHHHHHHHHSCCCTTT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCH----HHHHHHHHHHHHhcccccc--
Confidence 5666777754 4677788888876641 2467788888876543 3478888888877643211
Q ss_pred hhhhchhchHHHHHH-HHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 240 LSAFEIDKIVESFTW-VLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 240 ~~v~~~~g~i~~Lv~-lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+ ...++.|.. +++. .++.+|..|+++|.++...+... ...+++.|+.+|.++ ++.++..|+
T Consensus 88 --~---~~l~~~L~~~~~~d------~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~--~~~vR~~a~ 149 (280)
T 1oyz_A 88 --E---DNVFNILNNMALND------KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK--STNVRRATA 149 (280)
T ss_dssp --H---HHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred --c---hHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC--CHHHHHHHH
Confidence 1 124444443 3343 67778888888888776433211 124567777777766 777777777
Q ss_pred HHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHH
Q 041408 319 KLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAAD 398 (425)
Q Consensus 319 ~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~ 398 (425)
.+|.++.. .+++|.|+.+|.+. +..++..|+.+|..+.... ...++.|++.+...+..++
T Consensus 150 ~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR 209 (280)
T 1oyz_A 150 FAISVIND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVR 209 (280)
T ss_dssp HHHHTC-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHH
Confidence 77776543 24667777777654 6666666777666653211 1234455554444455555
Q ss_pred HHHHHHHHHHh
Q 041408 399 DRAILILSLIC 409 (425)
Q Consensus 399 e~a~~~L~~l~ 409 (425)
..|+.+|..+.
T Consensus 210 ~~A~~aL~~~~ 220 (280)
T 1oyz_A 210 IEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 55555555544
No 88
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=3e-09 Score=78.40 Aligned_cols=53 Identities=19% Similarity=0.409 Sum_probs=44.6
Q ss_pred CCCCCCcccCcCCccCCC---CceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 66 DIEIPEYFICPISLQIMK---DPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 66 ~~~~p~~~~Cpi~~~~m~---dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..+...+..||||++.|. +|++++|||.|++.||.+|+..+ .+||.|+.++..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---KKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---SBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---CCCcCcCccccC
Confidence 335667789999999884 46788999999999999999875 689999998854
No 89
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.88 E-value=1.3e-09 Score=76.52 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=41.8
Q ss_pred CcccCcCCccCCCC----ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKD----PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d----PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
.++.||||++.+.+ |++++|||.|++.||.+|+... .+||.|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCCCCCcCC
Confidence 46789999999977 7788999999999999999985 78999998774
No 90
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3e-09 Score=79.54 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCCCCcccCcCCccCCCCceec---CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 67 IEIPEYFICPISLQIMKDPVTA---ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 67 ~~~p~~~~Cpi~~~~m~dPV~~---~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+...+..||||++.|.+|..+ +|||.|++.||.+|+... .+||.|+.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---SBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---CcCCCcCccccc
Confidence 3667789999999999988755 999999999999999875 689999998854
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=6.9e-10 Score=92.82 Aligned_cols=54 Identities=17% Similarity=0.372 Sum_probs=47.5
Q ss_pred CCcccCcCCccCCCCc-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 70 PEYFICPISLQIMKDP-------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP-------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
++++.||||.+.|.+| |+++|||+||+.||.+|+... .+||.|++++.. ..+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH-KRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC---SBCTTTCCBCTT-TCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC---CCCCCCCCcCcc-ccccc
Confidence 5789999999999999 999999999999999999874 699999999875 55444
No 92
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5.9e-10 Score=78.73 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.7
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+++.||||.+.|.+|++++|||+||+.||.+| ...||.|+.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence 467899999999999999999999999999872 3789999998754
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.2e-10 Score=82.80 Aligned_cols=50 Identities=14% Similarity=0.375 Sum_probs=45.1
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++.+.+.||||++.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---CSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---cCcCCCcCCcccC
Confidence 56778999999999999 99999999999999999985 4799999988864
No 94
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.83 E-value=2.1e-09 Score=75.42 Aligned_cols=48 Identities=19% Similarity=0.467 Sum_probs=42.3
Q ss_pred CCCcccCcCCccCCCC---ceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKD---PVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~d---PV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
+.++..||||.+.|.+ ++.++ |||.|++.||.+|+... .+||.|+.++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH---STCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC---CSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC---CcCcCCCCEe
Confidence 4567889999999998 78887 99999999999999763 7899999876
No 95
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.82 E-value=2.4e-09 Score=83.61 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=44.9
Q ss_pred CCCCcccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
...++..||||++.|.+ +++++|||.|++.||.+|+... .+||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS---GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT---CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC---CcCcCcCccCCC
Confidence 45678899999999988 8889999999999999999864 699999988853
No 96
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.79 E-value=1.9e-07 Score=83.85 Aligned_cols=156 Identities=14% Similarity=-0.010 Sum_probs=127.5
Q ss_pred hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHH
Q 041408 198 EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRIL 277 (425)
Q Consensus 198 ~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L 277 (425)
+.+.++.|+.+|.+.+. .++..|+..|..+.. +++++.|+.+|.+ .++.+|..|+.+|
T Consensus 17 ~~~~~~~L~~~L~~~~~----~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~------~~~~vr~~a~~aL 74 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSY----YVRRAAAYALGKIGD------------ERAVEPLIKALKD------EDAWVRRAAADAL 74 (211)
T ss_dssp CGGGHHHHHHHTTCSSH----HHHHHHHHHHHHHCC------------GGGHHHHHHHTTC------SCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCH----HHHHHHHHHHHHhCC------------ccHHHHHHHHHcC------CCHHHHHHHHHHH
Confidence 35779999999976543 448889998887642 2688899999997 8999999999999
Q ss_pred HHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHH
Q 041408 278 KNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTE 357 (425)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e 357 (425)
..+.. .+.++.|+.+|.+. ++.++..|+.+|..+.. .++++.|+.+|.+. +..++.
T Consensus 75 ~~~~~-----------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~ 130 (211)
T 3ltm_A 75 GQIGD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRI 130 (211)
T ss_dssp HHHCC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHH
T ss_pred HhhCC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHH
Confidence 87642 35789999999988 99999999999998853 36889999999875 888999
Q ss_pred HHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 358 LILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 358 ~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
.|+.+|..+.. ...++.|++++...++.++..|+.+|..+..
T Consensus 131 ~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 131 AAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 99999998843 3468899997766688889999999888754
No 97
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=3.5e-09 Score=79.48 Aligned_cols=50 Identities=12% Similarity=0.341 Sum_probs=44.0
Q ss_pred CCCcccCcCCccCCCCc---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDP---VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dP---V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..++..||||++.|.+| +.++|||.|++.||.+|+..+ .+||.|+.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---CcCcCcCCcCCC
Confidence 45667899999999988 678999999999999999874 689999998854
No 98
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.74 E-value=3.1e-07 Score=81.72 Aligned_cols=154 Identities=14% Similarity=-0.014 Sum_probs=126.2
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
.+..+.++.+|.+.+. .++..|+.+|..+.. .+.++.|+..|.+ .++.+|..|+.+|.
T Consensus 13 ~~~~~~~i~~L~~~~~----~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~------~~~~vr~~a~~~L~ 70 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSY----YVRRAAAYALGKIGD------------ERAVEPLIKALKD------EDAWVRRAAADALG 70 (201)
T ss_dssp HHHHHHHHHHTTCSCH----HHHHHHHHHHHHHCC------------GGGHHHHHHHTTC------SSHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCCCH----HHHHHHHHHHHhcCC------------hhHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 4678889999987764 348889999986642 2678899999987 89999999999997
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
.+.. .+.++.|+.+|.+. ++.++..|+++|..+.. .++++.|+.+|.+. +..++..
T Consensus 71 ~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~ 126 (201)
T 3ltj_A 71 QIGD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIA 126 (201)
T ss_dssp HHCC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHH
T ss_pred hhCC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-CHHHHHH
Confidence 7632 35689999999988 99999999999998753 35889999999875 8889999
Q ss_pred HHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 359 ILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 359 Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
|+.+|..+.. ...++.|++++...+..++..|+.+|..+.
T Consensus 127 a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 127 AAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999988743 346889999777778889999999998884
No 99
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.71 E-value=1.2e-08 Score=83.10 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCcccCcCCccCCCCce------------------ecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPV------------------TAITGITYDRESIEHWLFQGN--NNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV------------------~~~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~~l~~ 121 (425)
+.+..||||++.|.+|+ +++|||.|++.||.+|+..+. ...+||.||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34568999999998886 789999999999999996421 24789999988854
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.69 E-value=1.4e-07 Score=100.32 Aligned_cols=194 Identities=14% Similarity=0.071 Sum_probs=133.0
Q ss_pred HHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHH-HHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 202 PRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESF-TWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 202 i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~L-v~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
|.++++.|++++. ..+..|+.+|.+|+.+....+.++.+ |+|..+ ..+|.. .+.++|..|+++|.||
T Consensus 36 i~Pll~~L~S~~~----~~r~~A~~al~~l~~~~~~~~l~~~~--~~v~~ll~~lL~D------~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 36 ILPVLKDLKSPDA----KSRTTAAGAIANIVQDAKCRKLLLRE--QVVHIVLTETLTD------NNIDSRAAGWEILKVL 103 (684)
T ss_dssp THHHHHHHSSSCC----SHHHHHHHHHHHHTTSHHHHHHHHHT--THHHHHHHTTTTC------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCH----HHHHHHHHHHHHHHcCcHHHHHHHHc--CCHHHHHHHHcCC------CCHHHHHHHHHHHHHH
Confidence 4445677877654 44999999999999876655555554 666655 556665 8899999999999999
Q ss_pred Hhcccchh-HhhcchhHHHHHHHHhcccc------------CC-------hHHHHHHHHHHHHhCCC-CCchHHHHhhCc
Q 041408 281 IQAASSKF-LQRLKPQIFQNIIRVLKQRV------------IA-------QQGINAALKLMLDACPS-GRNRMIMVESGA 339 (425)
Q Consensus 281 ~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~------------~~-------~~~~~~A~~aL~~L~~~-~~n~~~iv~~G~ 339 (425)
+....... ......|++++|..+|+... .. ....+.++.+|++||.+ ++....+.+.|.
T Consensus 104 ~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 104 AQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc
Confidence 98654332 23345689999999986420 00 12344677889999974 456667888999
Q ss_pred hHHHHHHhhccC--CcchHHHHHHHHHHHhCCH-hhHHHHhhccccH---HHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 340 VFELIELELTAS--EKKTTELILGILFHLCSCA-DGRAQFLSHRAAI---AVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 340 v~~Lv~lL~~~~--~~~~~e~Al~~L~~L~~~~-e~r~~~~~~~g~i---~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
+|.|+.+|.+.. ...+...|+.+|..|+... +....+.. .+.. ..+.. +.+.+...+..++.+|+++.
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~-~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLK-LATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHH-HHHSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHH-HhcCCcHHHHHHHHHHHhHh
Confidence 999999996542 3468889999999999854 44455544 3332 22222 23344445667889998874
No 101
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.67 E-value=4.9e-09 Score=78.45 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=40.0
Q ss_pred CCcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+++.||||++.+.+||+++|||+ ||+.|+..| ..||.|+.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 356789999999999999999999 999999888 479999998853
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.66 E-value=4.2e-08 Score=104.42 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=119.9
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHH-HHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQN-IIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~-Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
.|.+++..|++ .+++.|..|+++|.+|+.+.+.+..+... |+|.+ |..+|.+. +.+++.+|+++|.||+.
T Consensus 35 ~i~Pll~~L~S------~~~~~r~~A~~al~~l~~~~~~~~l~~~~-~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVLKDLKS------PDAKSRTTAAGAIANIVQDAKCRKLLLRE-QVVHIVLTETLTDN--NIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHHHHHSS------SCCSHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHTTTTCS--CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCC------CCHHHHHHHHHHHHHHHcCcHHHHHHHHc-CCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence 44456778988 88999999999999999866666655544 56665 45678887 99999999999999997
Q ss_pred C--CCchHHHHhhCchHHHHHHhhccC-------------C-------cchHHHHHHHHHHHhC-CHhhHHHHhhccccH
Q 041408 327 S--GRNRMIMVESGAVFELIELELTAS-------------E-------KKTTELILGILFHLCS-CADGRAQFLSHRAAI 383 (425)
Q Consensus 327 ~--~~n~~~iv~~G~v~~Lv~lL~~~~-------------~-------~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i 383 (425)
. .+.+..+++.|++++|..+|.... . ..+.+.++.+|.+||. ..+....+.. .+++
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l 184 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTI 184 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccH
Confidence 4 467888999999999999986420 0 1244567889999997 4445556654 6789
Q ss_pred HHHHHHHhcC---ChHHHHHHHHHHHHHhccCCC
Q 041408 384 AVVTKRIMQV---SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 384 ~~Lv~ll~~~---s~~~~e~a~~~L~~l~~~~~~ 414 (425)
+.|+..|... +...+..|+.+|+.|+..+..
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 9999988654 346788899999999887544
No 103
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.65 E-value=1.6e-08 Score=98.47 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=43.8
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
....||||.+.+.+||+++|||+||..||..|+... ...||.||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--GQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--CSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--CCCCCCCCCccCC
Confidence 347899999999999999999999999999999843 4799999998864
No 104
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.57 E-value=6.8e-07 Score=97.28 Aligned_cols=236 Identities=11% Similarity=0.026 Sum_probs=154.7
Q ss_pred HHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHh
Q 041408 163 IKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKL 240 (425)
Q Consensus 163 ~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~ 240 (425)
..++..+.+ +..+..|++.|..+++..+..-.... .+.++.++.++.+.+. .++..|+..+..++..... +.
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~----~vr~~a~e~l~~l~~~~~~-~~ 291 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDE----NVALEACEFWLTLAEQPIC-KD 291 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSH----HHHHHHHHHHHHHTTSTTH-HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcH----HHHHHHHHHHHHHhcchhH-HH
Confidence 344444433 47888899999998876554322211 2477778877765433 4588899998888754321 22
Q ss_pred hhhc-hhchHHHHHHHHc----------ccccccc------CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHH
Q 041408 241 SAFE-IDKIVESFTWVLA----------LDDESIE------NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRV 303 (425)
Q Consensus 241 ~v~~-~~g~i~~Lv~lL~----------~~~~~~~------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~l 303 (425)
.+.. ....++.++..+. .+.++.. .+...|..|+.+|..++...... . -..+++.|..+
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~-~~~l~~~l~~~ 367 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---L-LPHILPLLKEL 367 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---G-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---H-HHHHHHHHHHH
Confidence 2211 1146677776662 1100000 22345788899999888754321 1 13578888888
Q ss_pred hccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh--HHHHhhccc
Q 041408 304 LKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADG--RAQFLSHRA 381 (425)
Q Consensus 304 L~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~--r~~~~~~~g 381 (425)
+.+. ++..|+.|+++|.+++........-.-.+++|.++.+|.+. ++.++..|+.+|.+++..-.. ..... ..
T Consensus 368 l~~~--~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ 442 (852)
T 4fdd_A 368 LFHH--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KP 442 (852)
T ss_dssp HTCS--SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HH
T ss_pred hcCC--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HH
Confidence 9887 89999999999999998654221112256889999999875 888999999999999863211 11111 24
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhccCC
Q 041408 382 AIAVVTKRIMQVSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 382 ~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~ 413 (425)
.++.|++.+...++.+++.|+++|.+++.+.+
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 57788887767788999999999999987543
No 105
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.55 E-value=1.5e-08 Score=84.58 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCCcccCcCCccCCCCc-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 041408 69 IPEYFICPISLQIMKDP-------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPN 128 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dP-------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn 128 (425)
-++.+.||||++.+.+| +.++|||+|+..||.+|+... .+||.|+.++.. .++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~Cr~~~~~-~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINH-KRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC---SBCTTTCCBCCG-GGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC---CCCCCCCCcCCh-hcceee
Confidence 35678999999999998 889999999999999999974 799999999976 666553
No 106
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.8e-08 Score=74.49 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=39.1
Q ss_pred CCcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+++.||||++.+++||++||||+ ||+.|+.. ...||.|+.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------CCCCccCCceecC
Confidence 446789999999999999999999 99999953 2689999998854
No 107
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.54 E-value=5.9e-08 Score=70.31 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=43.3
Q ss_pred CCCcccCcCCccCCCCceec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTA--ITGIT-YDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~--~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-+++..|+||++-++|+|++ ||||. ||..|+.+|+..+ ..||.||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---KPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT---CCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC---CcCCCcCcchh
Confidence 34567899999999999987 99999 8999999999864 68999999874
No 108
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.52 E-value=1.4e-06 Score=81.75 Aligned_cols=166 Identities=8% Similarity=0.003 Sum_probs=124.0
Q ss_pred hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHH
Q 041408 198 EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRIL 277 (425)
Q Consensus 198 ~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L 277 (425)
+.+.++.|+..|.+.+. .++..|+.+|.++.. +++++.|+.+|++ .++.+|..|+++|
T Consensus 21 ~~~~i~~L~~~L~~~~~----~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d------~~~~vR~~A~~aL 78 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNS----LKRISSARVLQLRGG------------QDAVRLAIEFCSD------KNYIRRDIGAFIL 78 (280)
T ss_dssp HTSCHHHHHHHTTCSSH----HHHHHHHHHHHHHCC------------HHHHHHHHHHHTC------SSHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCH----HHHHHHHHHHHccCC------------chHHHHHHHHHcC------CCHHHHHHHHHHH
Confidence 45789999999976643 348889999988751 2678889999987 8899999999999
Q ss_pred HHHHhcccchhHhhcchhHHHHHHH-HhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchH
Q 041408 278 KNIIQAASSKFLQRLKPQIFQNIIR-VLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTT 356 (425)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~ 356 (425)
..+...... ...+++.|.+ ++.+. ++.++..|+++|.++...... ....+++.|+.+|.+. ++.++
T Consensus 79 ~~l~~~~~~------~~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~-~~~vR 145 (280)
T 1oyz_A 79 GQIKICKKC------EDNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDK-STNVR 145 (280)
T ss_dssp HHSCCCTTT------HHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCS-CHHHH
T ss_pred HHhcccccc------chHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCC-CHHHH
Confidence 887532211 0124455553 45666 899999999999998642211 1235789999999875 88889
Q ss_pred HHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 357 ELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 357 e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
..|+.+|.++.. ..+++.|++++...+..++..|+.+|..+.
T Consensus 146 ~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 146 RATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 899988887643 247899999888778889999999998885
No 109
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=1.9e-08 Score=78.89 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=49.6
Q ss_pred CCcccCcCCccCCCCceec---CCCccccHHHHHHHHHc----CC-CCCCCCC--CCCC--CCCCCCCCccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMKDPVTA---ITGITYDRESIEHWLFQ----GN-NNAECPV--TKQP--LPKDLDLTPNHTLRRLIQA 137 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~---~~g~t~~r~~I~~~~~~----~~-~~~~cP~--~~~~--l~~~~~l~pn~~l~~~I~~ 137 (425)
.+.|.||||.+.+.+|+++ +|||+||+.||.+||.. +. ....||. |+.. +.+ .. ..+....++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~-~~-i~~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE-NE-IECMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH-HH-HHHHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH-HH-HHHHCCHHHHHH
Confidence 3578999999999999865 79999999999999974 21 1357999 9887 543 22 223333556666
Q ss_pred HHH
Q 041408 138 WCA 140 (425)
Q Consensus 138 ~~~ 140 (425)
|..
T Consensus 81 y~~ 83 (94)
T 1wim_A 81 YKK 83 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 110
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=9e-08 Score=72.83 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=40.3
Q ss_pred CcccCcCCccCCCC--------------ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKD--------------PVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d--------------PV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-.|+||++.|.+ ++.+ +|||.|.+.||.+|+... .+||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---CCCCCcCCCcch
Confidence 45679999999988 4455 599999999999999874 699999998753
No 111
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.44 E-value=1.2e-07 Score=68.41 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=41.5
Q ss_pred cccCcCCccCCCCceec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTA--ITGIT-YDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~--~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
...|+||++-++|++++ ||||. ||..|+.+|+..+ ..||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG---ASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT---CBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC---CcCCCcCchhh
Confidence 46799999999999988 99998 9999999999864 68999999874
No 112
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.32 E-value=3e-05 Score=84.27 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=154.9
Q ss_pred HHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhh--HHh--hcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 161 QIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRK--CMA--EAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 161 ~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~--~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
-+..++..+.+ ...+..++..|..+++..+..-. .+. -.+.+|.+++++.+.+ ..++..|+.+|..+...
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~----~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS----PKIRSHAVACVNQFIIS 204 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS----HHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhc
Confidence 35666666654 46678889999888876443211 000 1235666666665443 35588999999887654
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGI 314 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 314 (425)
.... ......++++.+..+++. ++.++|..|+++|..++........-.. .++++.++.++.+. ++.++
T Consensus 205 ~~~~--~~~~~~~~l~~l~~~~~d------~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~--~~~vr 273 (852)
T 4fdd_A 205 RTQA--LMLHIDSFIENLFALAGD------EEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ--DENVA 273 (852)
T ss_dssp TCHH--HHTSHHHHHHHHHHHHTC------CCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS--SHHHH
T ss_pred ccHH--HHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC--cHHHH
Confidence 3321 111112688889998886 8899999999999999886543322222 36889999999887 89999
Q ss_pred HHHHHHHHHhCCCCCchHHHHh--hCchHHHHHHh-----------hc--c--------CCcchHHHHHHHHHHHhCCHh
Q 041408 315 NAALKLMLDACPSGRNRMIMVE--SGAVFELIELE-----------LT--A--------SEKKTTELILGILFHLCSCAD 371 (425)
Q Consensus 315 ~~A~~aL~~L~~~~~n~~~iv~--~G~v~~Lv~lL-----------~~--~--------~~~~~~e~Al~~L~~L~~~~e 371 (425)
..|+.++..++.....+..+-. ...+|.++..+ .+ . .+..++..|..+|..|+....
T Consensus 274 ~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~ 353 (852)
T 4fdd_A 274 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353 (852)
T ss_dssp HHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc
Confidence 9999999999976543332211 25667777776 22 0 122457788888888886332
Q ss_pred hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCC
Q 041408 372 GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 372 ~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~ 413 (425)
..++. ..++.+.+.+.+.+...++.|+.+|..++.+.+
T Consensus 354 --~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 354 --DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp --GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred --HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence 12222 356777776666678899999999999987643
No 113
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.27 E-value=6.5e-07 Score=71.57 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=39.6
Q ss_pred cccCcCCccCCCCc------------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDP------------------VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~dP------------------V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+-.|+||.+.|.+| +.++|||.|.+.||.+|+... .+||.|+.++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---SBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---CcCcCCCCcce
Confidence 45799999999987 346999999999999999873 79999998864
No 114
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.25 E-value=2.1e-07 Score=70.38 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=38.6
Q ss_pred CcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++..|+||++.+++||++||||. ||+.|+..| ..||.|+.++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC
Confidence 45679999999999999999999 999998765 379999998753
No 115
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.24 E-value=4.1e-05 Score=79.83 Aligned_cols=222 Identities=9% Similarity=0.037 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
....+++.++++ ..+.-+.-.+..+++.+++.. .-++..+.+-|.+.+ ..++..|+.+|+++...+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n----~~ir~~AL~~L~~i~~~~--- 117 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPN----PLIRALAVRTMGCIRVDK--- 117 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSS----HHHHHHHHHHHHTCCSGG---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCC----HHHHHHHHHHHHcCChHH---
Confidence 355566656543 444444455555555443321 122444444454433 345888889998886211
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHH
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
+.. ..++.+..+|.+ .++.+|..|+.+|.++......... ..++++.|..+|.+. ++.++..|+
T Consensus 118 ---~~~--~l~~~l~~~L~d------~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~A~ 181 (591)
T 2vgl_B 118 ---ITE--YLCEPLRKCLKD------EDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS--NPMVVANAV 181 (591)
T ss_dssp ---GHH--HHHHHHHHHSSC------SCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS--CHHHHHHHH
T ss_pred ---HHH--HHHHHHHHHcCC------CChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC--ChhHHHHHH
Confidence 222 567778888887 8999999999999999886544222 247889999999887 899999999
Q ss_pred HHHHHhCCCCC-c---------hHHHHh----------------------------hCchHHHHHHhhccCCcchHHHHH
Q 041408 319 KLMLDACPSGR-N---------RMIMVE----------------------------SGAVFELIELELTASEKKTTELIL 360 (425)
Q Consensus 319 ~aL~~L~~~~~-n---------~~~iv~----------------------------~G~v~~Lv~lL~~~~~~~~~e~Al 360 (425)
.+|..++.... . -..++. ..+++.+..+|.+. +..+.-.|+
T Consensus 182 ~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~V~~ea~ 260 (591)
T 2vgl_B 182 AALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHA-NSAVVLSAV 260 (591)
T ss_dssp HHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-TTHHHHHHH
T ss_pred HHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-ChHHHHHHH
Confidence 99999987542 2 112221 13444455555544 677888888
Q ss_pred HHHHHHhC----CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 361 GILFHLCS----CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 361 ~~L~~L~~----~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.++..+.. .++....+.. ...+.|+. +...++..+..|+.+|..+....++
T Consensus 261 ~~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 261 KVLMKFLELLPKDSDYYNMLLK--KLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp HHHHHSCCSCCBTTBSHHHHHH--HTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhhccCCCHHHHHHHHH--HHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChH
Confidence 88888763 3344444332 34567776 4455677788888888888765443
No 116
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.5e-06 Score=65.63 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCCCcccCcCCccCC--CCceecCCC-----ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 041408 68 EIPEYFICPISLQIM--KDPVTAITG-----ITYDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTP 127 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m--~dPV~~~~g-----~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~p 127 (425)
...++..|+||++-+ .+|+++||+ |.|-+.||++|+...+ ..+||.|+.++.....+.|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-TRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-CSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-CCCCCCCCCeeecCcccCC
Confidence 445567899999877 578889996 9999999999998752 4689999999865333333
No 117
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.22 E-value=1.7e-05 Score=81.60 Aligned_cols=225 Identities=10% Similarity=0.077 Sum_probs=148.3
Q ss_pred HHHHHHHHh-c--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH
Q 041408 161 QIIKLIKDI-W--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 161 ~i~~lv~~l-~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
.+.+++..+ . ++.++..|+..|..++...+.. ......+|.+..++.+.+. .++..|+.+|..++..-+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~----~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQD----SVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCH----HHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHhCCH
Confidence 344444333 3 3578888999998887643221 1224678888888865543 3478888888877532111
Q ss_pred HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHH
Q 041408 238 MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAA 317 (425)
Q Consensus 238 ~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A 317 (425)
.... ..+++.+..+++. .++.+|..|+.+|..++..-.... ....+++.|+.++.+. ++.+|..|
T Consensus 237 --~~~~--~~~~~~l~~~~~d------~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~--~~~vr~~a 301 (588)
T 1b3u_A 237 --EDLE--ALVMPTLRQAAED------KSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDC--EAEVRAAA 301 (588)
T ss_dssp --HHHH--HHTHHHHHHHHTC------SSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCS--SHHHHHHH
T ss_pred --HHHH--HHHHHHHHHHccC------CCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHHHHHhCCC--cHHHHHHH
Confidence 1111 2578888888876 889999999999999986432211 1235789999999988 99999999
Q ss_pred HHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCCh
Q 041408 318 LKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSP 395 (425)
Q Consensus 318 ~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~ 395 (425)
+.+|..++..- +.+....-...+|.+..++.+. +..++..++.+|..++..- +..... ...+|.+...+...++
T Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~-~~~~~~--~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPIL-GKDNTI--EHLLPLFLAQLKDECP 377 (588)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHH-CHHHHH--HHTHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-hHhHHH--HHHHHHHHHHhCCCch
Confidence 99999887633 2222123346778888888765 7788888888888776522 111121 2356777776665566
Q ss_pred HHHHHHHHHHHHHhcc
Q 041408 396 AADDRAILILSLICKF 411 (425)
Q Consensus 396 ~~~e~a~~~L~~l~~~ 411 (425)
.++..++.+|..++..
T Consensus 378 ~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 378 EVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777666654
No 118
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.8e-07 Score=89.24 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.+++.||||.+.+.+||++||||+ ||+.|+..| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 456899999999999999999999 999999877 479999998853
No 119
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.9e-06 Score=63.00 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=39.9
Q ss_pred CCCcccCcCCccCCCCceecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGIT-YDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t-~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-.++..|+||++..++||++||||. ||..|+.. ...||.||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc
Confidence 3456889999999999999999999 99999983 3689999998854
No 120
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.12 E-value=1.4e-06 Score=72.22 Aligned_cols=120 Identities=11% Similarity=0.004 Sum_probs=86.3
Q ss_pred cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 199 AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 199 ~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
...++.++.+|.+.+.. ++..|+.+|..+.. ..++.|+.+|++ .++.+|..|+++|.
T Consensus 11 ~~~~~~l~~~L~~~~~~----vR~~A~~~L~~~~~-------------~~~~~L~~~L~d------~~~~vR~~A~~aL~ 67 (131)
T 1te4_A 11 SSGLVPRGSHMADENKW----VRRDVSTALSRMGD-------------EAFEPLLESLSN------EDWRIRGAAAWIIG 67 (131)
T ss_dssp ----------CCSSCCC----SSSSCCSSTTSCSS-------------TTHHHHHHGGGC------SCHHHHHHHHHHHG
T ss_pred cccHHHHHHHhcCCCHH----HHHHHHHHHHHhCc-------------hHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 46678888888776543 37777777776532 135788888987 88999999999997
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
++.. ..+++.|+.+|.+. ++.+|..|+++|.++.. ..+++.|+.+|.+. +..++..
T Consensus 68 ~~~~-----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~ 123 (131)
T 1te4_A 68 NFQD-----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKV 123 (131)
T ss_dssp GGCS-----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHH
T ss_pred hcCC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHH
Confidence 6542 35789999999988 99999999999998862 35789999999765 7888888
Q ss_pred HHHHHHH
Q 041408 359 ILGILFH 365 (425)
Q Consensus 359 Al~~L~~ 365 (425)
|+.+|..
T Consensus 124 A~~aL~~ 130 (131)
T 1te4_A 124 AVNYLET 130 (131)
T ss_dssp HHHHGGG
T ss_pred HHHHHHh
Confidence 8888754
No 121
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.10 E-value=9.5e-05 Score=76.01 Aligned_cols=214 Identities=8% Similarity=-0.005 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHH
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~ 251 (425)
...+..|+..|..++...+.. . ...-.+|.+..+..+.+ ...+..|+.+|..+...-... .. ..+++.
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~----~~~R~~a~~~l~~~~~~~~~~---~~--~~l~~~ 168 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDW----FTSRTSACGLFSVCYPRVSSA---VK--AELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSS----HHHHHHHGGGHHHHTTTSCHH---HH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHhcCHH---HH--HHHHHH
Confidence 477888999998887654321 1 12234666666654332 234777777887776432211 11 257888
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCch
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNR 331 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~ 331 (425)
+..+++. .++.+|..|+.+|..++..-..... ...++|.|..++.+. ++.+|..|+.+|..++..-..
T Consensus 169 l~~l~~d------~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 169 FRNLCSD------DTPMVRRAAASKLGEFAKVLELDNV---KSEIIPMFSNLASDE--QDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp HHHHHTC------SCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHHHhCC------CCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCH-
Confidence 8888876 8999999999999999875433221 136789999999988 899999999999988763322
Q ss_pred HHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 332 MIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 332 ~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
......++|.+..++.+. +..++..|+.+|..++..... ..+. ...++.+++++...+..++..|+.+|..++..
T Consensus 237 -~~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 122345788888888765 778999999999999863211 1121 23588899977777788999999999999876
Q ss_pred CCC
Q 041408 412 SGN 414 (425)
Q Consensus 412 ~~~ 414 (425)
-+.
T Consensus 312 ~~~ 314 (588)
T 1b3u_A 312 LSA 314 (588)
T ss_dssp SCT
T ss_pred hCh
Confidence 543
No 122
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.10 E-value=9.5e-05 Score=77.54 Aligned_cols=231 Identities=11% Similarity=0.035 Sum_probs=142.6
Q ss_pred HHHHHh--cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhh
Q 041408 164 KLIKDI--WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLS 241 (425)
Q Consensus 164 ~lv~~l--~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~ 241 (425)
.+...+ .++.++..|+.++..+...+++... +.++.+..+|.+.+. .++..|+.+|..++..++.....
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~----~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNH----GVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCH----HHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCH----hHHHHHHHHHHHHHHhChHHHHH
Confidence 333444 3468889999999888877665332 567777777765543 45889999999998776543222
Q ss_pred hhchhchHHHHHHHHccccc-c------c--cCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc----c
Q 041408 242 AFEIDKIVESFTWVLALDDE-S------I--ENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR----V 308 (425)
Q Consensus 242 v~~~~g~i~~Lv~lL~~~~~-~------~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~ 308 (425)
+. ..++.++.+|..-.. . + ..++..+...+.+|..++..+.... ..+++.|..++... .
T Consensus 217 ~~---~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 217 FR---KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HH---TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred HH---HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 22 577778777753000 0 0 1378888888899988886543211 12344555554311 0
Q ss_pred CChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHH
Q 041408 309 IAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTK 388 (425)
Q Consensus 309 ~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ 388 (425)
.+..+.-.|++++..+...+ .+. ..+++.|..+|.+. ++.++..|+.+|..++... ..++. ...+.++.
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~~ 357 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIVD 357 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHHH
Confidence 14466777788887765422 112 24667788887765 7788888888888877521 12222 13456666
Q ss_pred HHhcCChHHHHHHHHHHHHHhccCCChHHHHHHhh
Q 041408 389 RIMQVSPAADDRAILILSLICKFSGNFNFVVQEMS 423 (425)
Q Consensus 389 ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~~ 423 (425)
.+...+...+..|+.+|..++....- ..++.|..
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~nv-~~iv~eL~ 391 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNNI-RGMMKELL 391 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSST-HHHHHHHH
T ss_pred HccCCChhHHHHHHHHHHHHcccccH-HHHHHHHH
Confidence 55555667777888888888776544 55666543
No 123
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.99 E-value=2.1e-05 Score=82.14 Aligned_cols=183 Identities=11% Similarity=0.042 Sum_probs=127.7
Q ss_pred HHHHHHHhc--ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHH
Q 041408 162 IIKLIKDIW--KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMK 239 (425)
Q Consensus 162 i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~ 239 (425)
++.+...+. ++.++..|+.++..+...+++ .+.+.+.++.+..+|.+.+. .++..|+.+|..++..++...
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~----~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNP----MVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCH----HHHHHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCCh----hHHHHHHHHHHHHHhhCCCcc
Confidence 344555554 468899999999988875543 33446788999999976543 458999999999987653210
Q ss_pred hhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHH
Q 041408 240 LSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALK 319 (425)
Q Consensus 240 ~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~ 319 (425)
.+.-..+.++.|+..+.. .++..+...+.+|..++..++.. ...+++.+..+|++. ++.++-.|++
T Consensus 196 -~~~l~~~~~~~Ll~~l~~------~~~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~--~~~V~~ea~~ 261 (591)
T 2vgl_B 196 -LLDLNPQNINKLLTALNE------CTEWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHA--NSAVVLSAVK 261 (591)
T ss_dssp -SCCCHHHHHHHHHHHHHH------CCHHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSS--TTHHHHHHHH
T ss_pred -chhccHHHHHHHHHcCCC------CCchHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence 111112567778888876 77888888888887776433211 135788888999887 8999999999
Q ss_pred HHHHhCC----CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 320 LMLDACP----SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 320 aL~~L~~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++..+.. +++....+ -..++++|+.++. . ++.++-.|+.+|..++.
T Consensus 262 ~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHH
Confidence 9999974 22333333 2456788887764 3 77888888888888864
No 124
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.97 E-value=6.4e-05 Score=67.61 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhc--ChhHHHHHHHHHHHHhhhchh-hhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 159 KLQIIKLIKDIW--KPELQTKTLIQLEVFAAENER-NRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 159 ~~~i~~lv~~l~--s~~~~~~Al~~L~~la~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
+..+.-++..+. ++..+..++..|..+-++-+. -+...+ ...+|.++.++.+.+.. +.-.|+.+|..|-.+.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEk----val~A~r~L~~LLe~v 106 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEK----VTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHH----HHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchh----HHHHHHHHHHHHHcCC
Confidence 344555555564 458889999999888877322 222222 46789999998777653 3677888777665432
Q ss_pred HHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHH
Q 041408 236 EYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGIN 315 (425)
Q Consensus 236 ~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 315 (425)
+-..+-.. -.+..++.++++ ++.-.+.+|+..|..+-. .....+++..|.+++.+. +.+++.
T Consensus 107 pL~~~~y~---Kl~~aL~dlik~------~~~il~~eaae~Lgklkv-------~~~~~~V~~~l~sLl~Sk--d~~vK~ 168 (265)
T 3b2a_A 107 PMGSKTFL---KAAKTLVSLLES------PDDMMRIETIDVLSKLQP-------LEDSKLVRTYINELVVSP--DLYTKV 168 (265)
T ss_dssp CBCHHHHH---HHHHHHHHHTTS------CCHHHHHHHHHHHHHCCB-------SCCCHHHHHHHHHHHTCS--SHHHHH
T ss_pred CCCHHHHH---HHHHHHHHHhcC------CCchHHHHHHHHhCcCCc-------ccchHHHHHHHHHHHhCC--ChhHHH
Confidence 21111111 245567788887 888899999999998811 122347788999999777 999999
Q ss_pred HHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHh--cC
Q 041408 316 AALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIM--QV 393 (425)
Q Consensus 316 ~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~--~~ 393 (425)
+|+++|.+++...++... =.+++.-+-++|.+. |+.+.+.|+.+|..+...+--. .+..+..++-..++-|. .|
T Consensus 169 agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~-~~~~~~~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGH--LTLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLE-NVKIELLKISRIVDGLVYREG 244 (265)
T ss_dssp HHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCS-CCHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccH-hHHHHHHHHHHHHHHHHHhcC
Confidence 999999999984432211 124556677788887 9999999999999999865211 11111223334444332 45
Q ss_pred ChHHHHHHHHH
Q 041408 394 SPAADDRAILI 404 (425)
Q Consensus 394 s~~~~e~a~~~ 404 (425)
++..+..|-.+
T Consensus 245 ~~~~~~ka~~v 255 (265)
T 3b2a_A 245 APIIRLKAKKV 255 (265)
T ss_dssp CHHHHHHHHHH
T ss_pred ChhHHHHHHHH
Confidence 66665555433
No 125
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.94 E-value=0.00011 Score=67.29 Aligned_cols=178 Identities=12% Similarity=0.063 Sum_probs=124.6
Q ss_pred HHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHh-hcccCCCcccHHHHHHHHHhcCCChH-HHHh
Q 041408 165 LIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIV-NCCDKNQVGGLEGALSILHFFKITSE-YMKL 240 (425)
Q Consensus 165 lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~Al~~L~~L~~~~~-~~~~ 240 (425)
+...+.+ -..+..|+..|..+..+++.....- -..+++.|...|. +.+ ..++..|+.+|..|+..-. ....
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~----~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSN----VVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445544 3778889999988887643211100 0244666777773 443 2458889999998874211 1111
Q ss_pred hhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHH
Q 041408 241 SAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKL 320 (425)
Q Consensus 241 ~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~a 320 (425)
.+ ..+++.+...+.. .+..+|..|..+|..+..... . ..+++.|...|.+. ++.+|..++..
T Consensus 95 ~~---~~ilp~ll~~l~d------~~~~vr~~a~~aL~~~~~~~~------~-~~ll~~l~~~l~~~--~~~vr~~~l~~ 156 (242)
T 2qk2_A 95 YA---SACVPSLLEKFKE------KKPNVVTALREAIDAIYASTS------L-EAQQESIVESLSNK--NPSVKSETALF 156 (242)
T ss_dssp HH---HHHHHHHHHGGGC------CCHHHHHHHHHHHHHHHTTSC------H-HHHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHcCC------H-HHHHHHHHHHHcCC--ChHHHHHHHHH
Confidence 11 2578888998886 889999999999999976432 1 25789999999988 99999999999
Q ss_pred HHHh-CCCC-C--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 321 MLDA-CPSG-R--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 321 L~~L-~~~~-~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
|..+ .... + ....+ . ..+|.|+.+|.+. +.+++..|..+|..++.
T Consensus 157 l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLL-K-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHH-H-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 9995 4432 2 22222 2 5889999999875 88899999999999886
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.92 E-value=0.00019 Score=71.32 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=147.6
Q ss_pred HHHHHHHHhc----ChhHHHHHHHHHHHHhhhc-hhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCCh
Q 041408 161 QIIKLIKDIW----KPELQTKTLIQLEVFAAEN-ERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITS 235 (425)
Q Consensus 161 ~i~~lv~~l~----s~~~~~~Al~~L~~la~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~ 235 (425)
-++.++..+. +...+..|+..|..+++.. +..-.... ...++.+..+|.+... +..++..|+.++.++...-
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~--~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP--SNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC--CHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 3555666663 4467788999999988653 22111111 2467778888865521 1245888999998865321
Q ss_pred H-HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHH
Q 041408 236 E-YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGI 314 (425)
Q Consensus 236 ~-~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 314 (425)
. ........ .-+++.+...+.+ .+.++|..++.+|..++........-....++++.++..+++. ++.++
T Consensus 206 ~~~~~~~~~~-~~l~~~l~~~~~~------~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~ 276 (462)
T 1ibr_B 206 KANFDKESER-HFIMQVVCEATQC------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVA 276 (462)
T ss_dssp HHHHTSHHHH-HHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHH
T ss_pred HHhhhhhHHH-HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHH
Confidence 1 11100001 1245666666665 7889999999999999875543221111116788888888877 88999
Q ss_pred HHHHHHHHHhCCCC------------------CchHHHHh---hCchHHHHHHhhcc------CCcchHHHHHHHHHHHh
Q 041408 315 NAALKLMLDACPSG------------------RNRMIMVE---SGAVFELIELELTA------SEKKTTELILGILFHLC 367 (425)
Q Consensus 315 ~~A~~aL~~L~~~~------------------~n~~~iv~---~G~v~~Lv~lL~~~------~~~~~~e~Al~~L~~L~ 367 (425)
..|+.++..++... .....+++ ...+|.++..|... ++...+..|..+|..|+
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 99999988887532 00111221 34677787877542 13467888889999888
Q ss_pred CCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 368 SCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 368 ~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
..-. ..+.. ..++.+.+.+...+...++.|+.+|..++.+.
T Consensus 357 ~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 357 TCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred Hhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 7322 12322 35666767665567788999999999998754
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.92 E-value=4.3e-05 Score=70.03 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=128.6
Q ss_pred HHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhh-chhchHHHHHHHHc-cccccccCCHHHHHHHHHHHHHHHh
Q 041408 205 MLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAF-EIDKIVESFTWVLA-LDDESIENHKEIKSHALRILKNIIQ 282 (425)
Q Consensus 205 Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~-~~~g~i~~Lv~lL~-~~~~~~~~~~~~~~~A~~~L~~L~~ 282 (425)
+...+.+.+- ..+..|+..|..+..+.+ .+.. ....+++.|...+. . .+..++..|+.+|..|+.
T Consensus 20 l~~~l~s~~w----~~R~~a~~~L~~l~~~~~---~~~~~~~~~i~~~L~~~l~kd------~~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 20 FYDKLEEKKW----TLRKESLEVLEKLLTDHP---KLENGEYGALVSALKKVITKD------SNVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHHTCSSH----HHHHHHHHHHHHHHHHCS---SBCCCCCHHHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCH----HHHHHHHHHHHHHHccCC---CCCCCCHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHH
Confidence 5555544332 337777777776653211 1111 11256778888884 5 889999999999999996
Q ss_pred cccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHH
Q 041408 283 AASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGI 362 (425)
Q Consensus 283 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~ 362 (425)
.-.....-. -..++|.|+..+.+. ++.+|+.|..+|.++.....- ...+|.+...|.+. ++.+++.++..
T Consensus 87 ~l~~~~~~~-~~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~-~~~vr~~~l~~ 156 (242)
T 2qk2_A 87 GLAKRFSNY-ASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTSL------EAQQESIVESLSNK-NPSVKSETALF 156 (242)
T ss_dssp HHGGGGHHH-HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHhhhHHHH-HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 433222111 135899999999988 899999999999999875431 13678888888875 88999999999
Q ss_pred HHHHhCC--Hh--hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 363 LFHLCSC--AD--GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 363 L~~L~~~--~e--~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
|..+... ++ ....+ . ..+|.|++.+......++..|..+|..++..-++
T Consensus 157 l~~~l~~~~~~~~~~~~l-~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLL-K--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHTTCCGGGCCHHHH-H--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCCCccHHHH-H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 9996543 22 22222 2 3688899977767889999999999999876554
No 128
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=1.6e-06 Score=71.92 Aligned_cols=119 Identities=15% Similarity=0.002 Sum_probs=87.2
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
..++.++.+|++ .++.+|..|++.|..+.. ..++.|+.+|.+. ++.+|..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~------~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~--~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 12 SGLVPRGSHMAD------ENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE--DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp ---------CCS------SCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS--CHHHHHHHHHHHGGGCS
T ss_pred ccHHHHHHHhcC------CCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC--CHHHHHHHHHHHHhcCC
Confidence 577888888887 777888888887754321 1269999999988 99999999999998863
Q ss_pred CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHH
Q 041408 327 SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILS 406 (425)
Q Consensus 327 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~ 406 (425)
.++++.|+.+|.+. +..++..|+.+|..+.. ..+++.|++.+...+..++..|+.+|.
T Consensus 72 ----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34689999999875 88999999999998752 235788999776667788888888875
Q ss_pred H
Q 041408 407 L 407 (425)
Q Consensus 407 ~ 407 (425)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 129
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.85 E-value=0.0003 Score=76.04 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH-------------
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM------------- 238 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~------------- 238 (425)
...+..++..|..++...+..-........++.++..+.+.+. .++..|+..+..++......
T Consensus 231 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 306 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID----EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence 4667778888888876544322222223667777776654332 34777777777765321100
Q ss_pred -----Hhhhh-chhchHHHHHHHHccccc-cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCCh
Q 041408 239 -----KLSAF-EIDKIVESFTWVLALDDE-SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQ 311 (425)
Q Consensus 239 -----~~~v~-~~~g~i~~Lv~lL~~~~~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 311 (425)
...+. .....++.++..+....+ .-+.+...|..|+.+|..++....... . ..+++.+...+.+. ++
T Consensus 307 ~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~---~-~~~l~~l~~~l~~~--~~ 380 (876)
T 1qgr_A 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNP--DW 380 (876)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCS--SH
T ss_pred ccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh---H-HHHHHHHHHHccCC--Ch
Confidence 00000 001466777777753110 001345688889999998876543211 1 35778888888887 89
Q ss_pred HHHHHHHHHHHHhCCCCC-c-hHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCC-Hhh--HHHHhhccccHHHH
Q 041408 312 QGINAALKLMLDACPSGR-N-RMIMVESGAVFELIELELTASEKKTTELILGILFHLCSC-ADG--RAQFLSHRAAIAVV 386 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~~~~-n-~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~-~e~--r~~~~~~~g~i~~L 386 (425)
..|+.|+.+|.+++.... . ..... ..++|.++..|.+. +..++..|+.+|.+++.. +.. ..... ...++.|
T Consensus 381 ~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l 456 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCL 456 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHH
Confidence 999999999999997543 2 22222 45899999999875 788999999999999873 221 01111 2346677
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 387 TKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 387 v~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
++.+.. ++..++.|+++|..++..
T Consensus 457 ~~~l~~-~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 457 IEGLSA-EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 775544 577888999999888764
No 130
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.83 E-value=2.4e-06 Score=69.25 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=0.0
Q ss_pred ccCcCCccCCCCc-----------------ee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDP-----------------VT-AITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dP-----------------V~-~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|+||.+.|.+| |+ ++|||.|.+.||.+|+... .+||.|+.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNREWE 111 (117)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---CcCCCCCCeee
Confidence 4799999999885 32 4899999999999999874 79999998864
No 131
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.74 E-value=0.00021 Score=71.01 Aligned_cols=222 Identities=9% Similarity=-0.043 Sum_probs=139.3
Q ss_pred hhHHHHHHHHHHHHhhhchhhh-hHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH-HHhhhhchhchH
Q 041408 172 PELQTKTLIQLEVFAAENERNR-KCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY-MKLSAFEIDKIV 249 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~-~~~~v~~~~g~i 249 (425)
...+..|++++..+...-..+- ......-.++.+...+.+.+ ..++..++.+|..+...... ....+.. +++
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~ 261 (462)
T 1ibr_B 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD----TRVRVAALQNLVKIMSLYYQYMETYMGP--ALF 261 (462)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS----HHHHHHHHHHHHHHHHHCGGGCTTTTTT--THH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 4678889998887543211110 00011113444444443332 24577888888887642211 1112211 577
Q ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc------------------hhHhhc--chhHHHHHHHHhccc--
Q 041408 250 ESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS------------------KFLQRL--KPQIFQNIIRVLKQR-- 307 (425)
Q Consensus 250 ~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~------------------~~~~~~--~~g~i~~Lv~lL~~~-- 307 (425)
+.++..++. .+.+++..|+..+..++..... ...+.. -..++|.|++.|...
T Consensus 262 ~~~~~~~~~------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~ 335 (462)
T 1ibr_B 262 AITIEAMKS------DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE 335 (462)
T ss_dssp HHHHHHHHC------SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHcC------CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccc
Confidence 777777776 7889999999999988865310 000110 134678888888532
Q ss_pred ---cCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh--hHHHHhhcccc
Q 041408 308 ---VIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCAD--GRAQFLSHRAA 382 (425)
Q Consensus 308 ---~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e--~r~~~~~~~g~ 382 (425)
+.+...+..|+.+|..|+..-.. .+. ..++|.+...|.+. +...++.|+.+|..++.... .-...+ ...
T Consensus 336 d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~ 409 (462)
T 1ibr_B 336 NDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQA 409 (462)
T ss_dssp SCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHH
Confidence 12457899999999998874331 222 35677777888765 88899999999999997432 111111 356
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 383 IAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 383 i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
+|.++..+...++.++..|+++|..++..
T Consensus 410 ~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 410 MPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88899977777889999999999999874
No 132
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.74 E-value=0.00027 Score=63.56 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=134.7
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC--hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT--SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRIL 277 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~--~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L 277 (425)
+.+..|..+|.+.+. .++.+|+.+|.++-.. +......+. ..++.++.++++ .+..+.-.|+.+|
T Consensus 33 ~~l~~L~~LL~dkD~----~vk~raL~~LeellK~~~~~l~~~~~e---~~Ld~iI~llk~------~dEkval~A~r~L 99 (265)
T 3b2a_A 33 RALFLILELAGEDDE----TTRLRAFVALGEILKRADSDLRMMVLE---RHLDVFINALSQ------ENEKVTIKALRAL 99 (265)
T ss_dssp HHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHSCHHHHHHHHH---HHHHHHHHTCCS------TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccccccHHHHH---HHHHHHHHHHhc------cchhHHHHHHHHH
Confidence 457778888865543 4589999999987654 333333333 689999999987 8999999999999
Q ss_pred HHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHH
Q 041408 278 KNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTE 357 (425)
Q Consensus 278 ~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e 357 (425)
..|..+.+-...-.. -++..|.++++.+ ++-.+..|+..|..+......+ +++..+..++.+. +..++.
T Consensus 100 ~~LLe~vpL~~~~y~--Kl~~aL~dlik~~--~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Sk-d~~vK~ 168 (265)
T 3b2a_A 100 GYLVKDVPMGSKTFL--KAAKTLVSLLESP--DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSP-DLYTKV 168 (265)
T ss_dssp HHHHTTCCBCHHHHH--HHHHHHHHHTTSC--CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCS-SHHHHH
T ss_pred HHHHcCCCCCHHHHH--HHHHHHHHHhcCC--CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCC-ChhHHH
Confidence 999877653332221 3678899999988 9999999999999994333232 3456788888665 999999
Q ss_pred HHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccC
Q 041408 358 LILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFS 412 (425)
Q Consensus 358 ~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~ 412 (425)
.++.+|.+++...+...-+- ..+.-+-++|.+.++..++.|+.+|..+.+..
T Consensus 169 agl~~L~eia~~S~D~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcccCCHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 99999999998554333221 12233444455667888999999998887763
No 133
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00029 Score=65.06 Aligned_cols=181 Identities=7% Similarity=0.004 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHH-HhhhchhhhhHHhh-cCcHHHHHHHHh-hcccCCCcccHHHHHHHHHhcCCChHHHH-hhhh--ch
Q 041408 172 PELQTKTLIQLEV-FAAENERNRKCMAE-AGVPRAMLTYIV-NCCDKNQVGGLEGALSILHFFKITSEYMK-LSAF--EI 245 (425)
Q Consensus 172 ~~~~~~Al~~L~~-la~~~~~~r~~i~~-~G~i~~Lv~lL~-s~~~~~~~~~~~~Al~~L~~L~~~~~~~~-~~v~--~~ 245 (425)
-..+.+|+..|.. +..+++.....-.+ ...+..|.+.|. +.+ ..++..|+.+|..|+.+ .+ .-+. ..
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n----~~v~~~A~~al~~la~~---l~~~~f~~~y~ 102 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN----IQAVALAAQSVELICDK---LKTPGFSKDYV 102 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHHHH---HCTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHh---cccccccHHHH
Confidence 3778889999988 77554332110111 234566666663 332 34588899999998732 22 1121 11
Q ss_pred hchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 246 DKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 246 ~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.-+++.++..++. ....++..+..+|..++..-+.......-..+++.|+..|.+. ++.+|+.++.+|..+.
T Consensus 103 ~~llp~ll~~l~d------kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 103 SLVFTPLLDRTKE------KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHHHHHGGGC------CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHH
Confidence 2478888888886 7788999999999888875322111110125789999999988 9999999999999888
Q ss_pred CCCCc-hH---HHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 326 PSGRN-RM---IMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 326 ~~~~n-~~---~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
..... .. ..+....+|.|..+|.+. +..+++.|..+|..++.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 63321 12 223247899999999875 88999999999998875
No 134
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.71 E-value=0.00045 Score=74.44 Aligned_cols=239 Identities=10% Similarity=0.084 Sum_probs=146.2
Q ss_pred HHHHHHHHhcC-hhHHHHHHHHHHHHhhhch-----hhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC
Q 041408 161 QIIKLIKDIWK-PELQTKTLIQLEVFAAENE-----RNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT 234 (425)
Q Consensus 161 ~i~~lv~~l~s-~~~~~~Al~~L~~la~~~~-----~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~ 234 (425)
-++.++..+++ +..+..|+++|..+++... .....+ ..+++.|+.++.+.+.+ ..++..++.+|..+...
T Consensus 455 ~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~--~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 455 VVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNE--FNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCG--GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcc--hHHHHHHHHHHHHHHHH
Confidence 34455556654 4677788899988876532 111222 24577777877643321 23477788888877532
Q ss_pred hH-HHHhhhhchhchHHHHHHHHcccc---------ccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh
Q 041408 235 SE-YMKLSAFEIDKIVESFTWVLALDD---------ESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL 304 (425)
Q Consensus 235 ~~-~~~~~v~~~~g~i~~Lv~lL~~~~---------~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL 304 (425)
.. .....+. ..++.++..|.... +......+.+..++.+|..++..-.....- ....+++.++.++
T Consensus 531 ~~~~~~~~~~---~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l 606 (861)
T 2bpt_A 531 ATDTVAETSA---SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLL 606 (861)
T ss_dssp CCGGGHHHHH---HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHH
T ss_pred cchhhHHHHH---HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHH
Confidence 21 1112221 46666776665300 000013456778889999988754432211 1236888999999
Q ss_pred ccccCCh-HHHHHHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHHHHhhccc
Q 041408 305 KQRVIAQ-QGINAALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRAQFLSHRA 381 (425)
Q Consensus 305 ~~~~~~~-~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g 381 (425)
.+. +. .+++.++.++..++... ..-..... ..+|.|+..|.+. +..++..|+.++..++. .++.-.... ..
T Consensus 607 ~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~ 680 (861)
T 2bpt_A 607 EKK--DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS--DA 680 (861)
T ss_dssp HST--TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH--HH
T ss_pred ccC--CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH--HH
Confidence 877 56 78999999999887632 22222222 3888999998654 77788899999998876 222212222 23
Q ss_pred cHHHHHHHHhcCC--hHHHHHHHHHHHHHhccCC
Q 041408 382 AIAVVTKRIMQVS--PAADDRAILILSLICKFSG 413 (425)
Q Consensus 382 ~i~~Lv~ll~~~s--~~~~e~a~~~L~~l~~~~~ 413 (425)
.++.+++.+...+ ...++.++.+|..++...+
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 4667777666543 6788899999988887543
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.69 E-value=0.0018 Score=61.64 Aligned_cols=176 Identities=9% Similarity=0.021 Sum_probs=125.6
Q ss_pred HHHHHHHHh--cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHH
Q 041408 161 QIIKLIKDI--WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYM 238 (425)
Q Consensus 161 ~i~~lv~~l--~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~ 238 (425)
.+..++..| ++......++..|..+-.++.+....++..|++..|++++..... ..+..++++|.+|..+.+..
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g----N~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH----NYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh----HHHHHHHHHHHHHHhccccc
Confidence 344555665 346788999999987444667777777888999999999976533 34899999999999888877
Q ss_pred HhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchh----------HHHHHHHHhc---
Q 041408 239 KLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQ----------IFQNIIRVLK--- 305 (425)
Q Consensus 239 ~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g----------~i~~Lv~lL~--- 305 (425)
..++.+ +..|..++.++.+ ....+.+.|..+|..++...+........+- -++.|+.+|+
T Consensus 195 ~gvvs~-~~fI~~lyslv~s------~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 195 LGVVAH-SDTIQWLYTLCAS------LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp HHHHHC-HHHHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred cchhCC-HHHHHHHHHHHcC------ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 777765 4799999999987 7899999999999999988765444332211 2569999997
Q ss_pred cccCChHHHHHHHHHHHHhCCC-C--CchHHHH----hhCchHHHHHHhhc
Q 041408 306 QRVIAQQGINAALKLMLDACPS-G--RNRMIMV----ESGAVFELIELELT 349 (425)
Q Consensus 306 ~~~~~~~~~~~A~~aL~~L~~~-~--~n~~~iv----~~G~v~~Lv~lL~~ 349 (425)
++ +.+.+-.|...|-.+-.. + +.+..++ +.|.=..+...|..
T Consensus 268 ~~--D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 268 GA--DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp SC--CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred CC--CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 45 888888888776555432 2 2233333 24544555555544
No 136
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.64 E-value=0.0011 Score=71.40 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH--------------
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY-------------- 237 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~-------------- 237 (425)
...+..++..|..++...+..-........++.+...+.+.+ ..++..|+..+..++.....
T Consensus 238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 313 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN----DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQ 313 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh
Confidence 467778888888887654432111111145566665554433 24478888888777543211
Q ss_pred ----HHhhhhchhchHHHHHHHHccccc-cccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChH
Q 041408 238 ----MKLSAFEIDKIVESFTWVLALDDE-SIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 238 ----~~~~v~~~~g~i~~Lv~lL~~~~~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
.+..+ ..+++.++..+....+ ..+.+...+..|..+|..++..-.... -..+++.+...+.+. +..
T Consensus 314 ~~~~~~~~~---~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~----~~~l~~~l~~~l~~~--~~~ 384 (861)
T 2bpt_A 314 SYNFALSSI---KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI----LEPVLEFVEQNITAD--NWR 384 (861)
T ss_dssp CCCHHHHHH---HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG----HHHHHHHHHHHTTCS--SHH
T ss_pred hHHHHHHHH---HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhH----HHHHHHHHHHHcCCC--Chh
Confidence 11111 2577888888864110 011345788899999999886433111 135677778888877 899
Q ss_pred HHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhH---HHHhhccccHHHHH
Q 041408 313 GINAALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGR---AQFLSHRAAIAVVT 387 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r---~~~~~~~g~i~~Lv 387 (425)
.|+.|+.+|.+++.... .....++ .++|.|+..+.+. ++.++..++.+|.+++..-... .... ...++.|+
T Consensus 385 ~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~ 460 (861)
T 2bpt_A 385 NREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACL 460 (861)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHH
Confidence 99999999999997543 1222222 5788888888765 7888999999999988632110 1111 23467777
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcc
Q 041408 388 KRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 388 ~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
+.+.. .+..+..|+.+|..++..
T Consensus 461 ~~l~~-~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 461 IGLQD-HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-ChHHHHHHHHHHHHHHHh
Confidence 76644 477888899999888775
No 137
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.60 E-value=0.0012 Score=62.89 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHH-hhCchHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMV-ESGAVFEL 343 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv-~~G~v~~L 343 (425)
++.+.+..+..-|..+-+.+..=...++..+++..|+++...+ +...+..+++||.+|-.+..+-..++ ....|..+
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~l 207 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWL 207 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHH
Confidence 6677778888888774444443344444557799999999988 99999999999999999877776666 45788888
Q ss_pred HHHhhccCCcchHHHHHHHHHHHhCCHh-hHHHHhhccc------c---HHHHHHHHh---cCChHHHHHHHHHHHHHhc
Q 041408 344 IELELTASEKKTTELILGILFHLCSCAD-GRAQFLSHRA------A---IAVVTKRIM---QVSPAADDRAILILSLICK 410 (425)
Q Consensus 344 v~lL~~~~~~~~~e~Al~~L~~L~~~~e-~r~~~~~~~g------~---i~~Lv~ll~---~~s~~~~e~a~~~L~~l~~ 410 (425)
+.++.+. +..+...|+++|..++...+ +...+..... | ...|+++|. .++...+.+|+.++-.+..
T Consensus 208 yslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 208 YTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp HHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 8888864 78899999999999998554 5544433211 1 668999776 4567888999999998888
Q ss_pred cCCC
Q 041408 411 FSGN 414 (425)
Q Consensus 411 ~~~~ 414 (425)
+.++
T Consensus 287 ~apd 290 (339)
T 3dad_A 287 ALPD 290 (339)
T ss_dssp HCSS
T ss_pred cCCC
Confidence 8776
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00044 Score=63.84 Aligned_cols=180 Identities=11% Similarity=0.091 Sum_probs=123.3
Q ss_pred cHHHHHHHHHh-cCCChHHHHhhh--h-chhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhccc-chh--Hhhc
Q 041408 220 GLEGALSILHF-FKITSEYMKLSA--F-EIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAAS-SKF--LQRL 292 (425)
Q Consensus 220 ~~~~Al~~L~~-L~~~~~~~~~~v--~-~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~--~~~~ 292 (425)
.+..|+..|.. +..+. ..+. . ....++..|...+.. ..+..++..|+.+|..++.+-. ... ...
T Consensus 32 eRk~al~~L~~~~~~~~---~~i~~~~~~~~~~~~~L~~~l~~-----D~n~~v~~~A~~al~~la~~l~~~~f~~~y~- 102 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQT---KKLKSTSQNYSNLLGIYGHIIQK-----DANIQAVALAAQSVELICDKLKTPGFSKDYV- 102 (249)
T ss_dssp HHHHHHHHHHHHTGGGC---CCBCCTTCCCHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-
T ss_pred HHHHHHHHHHHHHHhcC---CccccCcccHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHhcccccccHHHH-
Confidence 36777777777 65321 1222 1 112567788888843 2789999999999999996543 222 111
Q ss_pred chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC-CchHHH-HhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 293 KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG-RNRMIM-VESGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 293 ~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~i-v~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
.-++|.++..+.+. .+.+++.+..+|.+++.+- .....- . ...++.|+..|.+. ++.+++.++.+|..++...
T Consensus 103 -~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 103 -SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp -HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 24789999999987 8889999999988887632 111000 0 12567788888775 7889999999999998633
Q ss_pred hh--HH--HHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 371 DG--RA--QFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 371 e~--r~--~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.. .. ..+. ...+|.|.+.+......+++.|..+|..+++.-++
T Consensus 178 ~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 178 KDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred CCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 21 11 2221 35789999988777889999999999999876555
No 139
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.54 E-value=0.0015 Score=68.42 Aligned_cols=200 Identities=10% Similarity=0.001 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHH-hhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 172 PELQTKTLIQLEVF-AAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 172 ~~~~~~Al~~L~~l-a~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
...+.++++.|-++ ..|.+. ..+.+.+++++.+.+.. .+.-..-.+..++..+++. +. -++.
T Consensus 48 ~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~s~~~~----~Krl~Yl~~~~~~~~~~e~---~~---l~in 110 (618)
T 1w63_A 48 NTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIASQKFT----DKRIGYLGAMLLLDERQDV---HL---LMTN 110 (618)
T ss_dssp TTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHHSSSHH----HHHHHHHHHHHHCCCCHHH---HH---HHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHcCCchH----HHHHHHHHHHHHhCCCcHH---HH---HHHH
Confidence 35566667666443 223221 23455566777655432 2444444555565544321 11 2566
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC-CC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS-GR 329 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~-~~ 329 (425)
.+.+-|++ .|+..|..|+.+|.++... .+. ..+++.+.++|.+. ++-+|+.|+.++.++... ++
T Consensus 111 ~l~kDL~~------~n~~vr~lAL~~L~~i~~~-----~~~--~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 111 CIKNDLNH------STQFVQGLALCTLGCMGSS-----EMC--RDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HHHHHHSC------SSSHHHHHHHHHHHHHCCH-----HHH--HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhcCC------CCHhHHHHHHHHHHhcCCH-----HHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHChH
Confidence 78888887 8999999999999998742 111 36789999999988 999999999999999863 33
Q ss_pred chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh-HHHHhhccccHHHHHHHHhc---------------C
Q 041408 330 NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADG-RAQFLSHRAAIAVVTKRIMQ---------------V 393 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~-r~~~~~~~g~i~~Lv~ll~~---------------~ 393 (425)
.. + +.++.+..+|.+. ++.++..|+.+|..++..... ...+ . ..+|.++++|.. .
T Consensus 176 ~v----~-~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~-~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 176 LM----E-MFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF-R--KLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp GG----G-GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH-H--TTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred HH----H-HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH-H--HHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 22 2 6788888888775 889999999999999985433 2233 2 457888887654 2
Q ss_pred ChHHHHHHHHHHHHHhccC
Q 041408 394 SPAADDRAILILSLICKFS 412 (425)
Q Consensus 394 s~~~~e~a~~~L~~l~~~~ 412 (425)
++..|-..+.+|..++...
T Consensus 247 ~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRND 265 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhCCCC
Confidence 5677778888888887654
No 140
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.51 E-value=0.00096 Score=75.33 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=146.8
Q ss_pred HHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH--
Q 041408 162 IIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY-- 237 (425)
Q Consensus 162 i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~-- 237 (425)
+..++..+.+ ...+..|+..|..++...+. ..+ ..+++.|+..|.+.+. .++..|..+|..++..-..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~----~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKE----QLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSS----HHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHhCCCcc
Confidence 4456666644 47788899999888765332 111 2345666666654432 3477777777776521110
Q ss_pred -----HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChH
Q 041408 238 -----MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQ 312 (425)
Q Consensus 238 -----~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 312 (425)
..... +.++|.|...+.. ..+...+..|+.+|..++........- ....+++.|+..|.+. ++.
T Consensus 122 ~~~~~~~~~~---~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~--~~~ 190 (1230)
T 1u6g_C 122 SGSALAANVC---KKITGRLTSAIAK-----QEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP--RLA 190 (1230)
T ss_dssp --CCTHHHHH---HHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS--SHH
T ss_pred cccchHHHHH---HHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCC--cHH
Confidence 01111 2688899999972 177899999999999998643221111 1146788888999887 889
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh-ccccHHHHHHHHh
Q 041408 313 GINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS-HRAAIAVVTKRIM 391 (425)
Q Consensus 313 ~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~-~~g~i~~Lv~ll~ 391 (425)
+|+.|+.+|..++...... + -...++.|+..|.+..+...+..++.++..++... +. .+.. -...+|.+++.+.
T Consensus 191 vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~-~~-~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 191 VRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GH-RIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SG-GGTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHHHHhc
Confidence 9999999999999754332 1 23468899998876533455566777777776521 11 1211 1245778888666
Q ss_pred cCChHHHHHHHHHHHHHhccCCC
Q 041408 392 QVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 392 ~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
..++..++.++.+|..++...+.
T Consensus 266 d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 266 VDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp SCCTTTHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHChH
Confidence 65678888999999888876543
No 141
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.39 E-value=0.00045 Score=78.05 Aligned_cols=229 Identities=11% Similarity=0.066 Sum_probs=144.2
Q ss_pred HHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH
Q 041408 160 LQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 160 ~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
..+..++..+.+ ++.+..|+..|......+...-..-.....++.|++.|.+.+ ..++..|+.+|..++..-..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~----~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN----GEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS----HHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHhCCH
Confidence 467788888854 477888888887654322110000011245777888776443 24588899999888753222
Q ss_pred HHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccch-----hHhhcchhHHHHHHHHhcc-ccCCh
Q 041408 238 MKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSK-----FLQRLKPQIFQNIIRVLKQ-RVIAQ 311 (425)
Q Consensus 238 ~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~-----~~~~~~~g~i~~Lv~lL~~-~~~~~ 311 (425)
..+ ..+++.+...|.. .+..+|..|+.+|..++..-... ........++|.|++.+.+ . ++
T Consensus 82 --~~~---~~i~~~Ll~~l~d------~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~--~~ 148 (1230)
T 1u6g_C 82 --YQV---ETIVDTLCTNMLS------DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE--DV 148 (1230)
T ss_dssp --HHH---HHHHHHHHHHTTC------SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS--CH
T ss_pred --HHH---HHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC--ch
Confidence 112 1477778888876 66788999999999887654322 0111124689999999984 5 88
Q ss_pred HHHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHH
Q 041408 312 QGINAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRI 390 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll 390 (425)
..+..|+.+|..++.. +....... ...++.|+..|.+. +..+++.|+.+|..++..... .+. ...++.|++.|
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L 222 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSEL 222 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHh
Confidence 9999999999998842 21111011 34566777777664 778999999999999874432 122 23578888877
Q ss_pred hcCC-hHHHHHHHHHHHHHhcc
Q 041408 391 MQVS-PAADDRAILILSLICKF 411 (425)
Q Consensus 391 ~~~s-~~~~e~a~~~L~~l~~~ 411 (425)
.... ...+..++.+|..++..
T Consensus 223 ~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 223 SKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp HHTCSSCSCTTHHHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHH
Confidence 6543 23445566777666654
No 142
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.29 E-value=0.0096 Score=64.12 Aligned_cols=234 Identities=11% Similarity=0.082 Sum_probs=144.0
Q ss_pred HHHHHHHhc----ChhHHHHHHHHHHHHhhhchhhhhHHhh--cCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC-
Q 041408 162 IIKLIKDIW----KPELQTKTLIQLEVFAAENERNRKCMAE--AGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT- 234 (425)
Q Consensus 162 i~~lv~~l~----s~~~~~~Al~~L~~la~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~- 234 (425)
++.++..+. ++..+..++..|..++..... ..+.. ...++.+...+.+... +..++..|+.+|..+...
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~--~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEP--SNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCS--CHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 445555553 446678889999888764211 11111 2456667777755421 124578899999886532
Q ss_pred hHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHH
Q 041408 235 SEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGI 314 (425)
Q Consensus 235 ~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 314 (425)
.+........ ..+++.+...+.. .+.+++..++.+|..++........-.....+++.++..+.+. ++.++
T Consensus 206 ~~~~~~~~~~-~~il~~l~~~~~~------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~ 276 (876)
T 1qgr_A 206 KANFDKESER-HFIMQVVCEATQC------PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVA 276 (876)
T ss_dssp HHHHTSHHHH-HHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHH
T ss_pred HHHHHhHHHH-HHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--chHHH
Confidence 1111100110 1366777777765 7789999999999999875443322122226788888888776 88999
Q ss_pred HHHHHHHHHhCCCC-------------------C--ch-HHHHhhCchHHHHHHhhcc------CCcchHHHHHHHHHHH
Q 041408 315 NAALKLMLDACPSG-------------------R--NR-MIMVESGAVFELIELELTA------SEKKTTELILGILFHL 366 (425)
Q Consensus 315 ~~A~~aL~~L~~~~-------------------~--n~-~~iv~~G~v~~Lv~lL~~~------~~~~~~e~Al~~L~~L 366 (425)
..|+.++.+++... . +. ...+ ...+|.++..|... ++..++..|..+|..+
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 99999988886431 0 11 1111 34678888888531 1456778888888888
Q ss_pred hCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCC
Q 041408 367 CSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 367 ~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~ 413 (425)
+..-.. .++. ..++.+.+.+...+...++.|+.+|..++.+..
T Consensus 356 ~~~~~~--~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 356 ATCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp HHHHGG--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHCcH--hhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence 763321 1222 345556665555567889999999999987654
No 143
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.12 Score=44.74 Aligned_cols=214 Identities=12% Similarity=0.098 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhcCh--hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH
Q 041408 159 KLQIIKLIKDIWKP--ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE 236 (425)
Q Consensus 159 ~~~i~~lv~~l~s~--~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~ 236 (425)
..-+..++..|.+. .++..|+..+..+++.-++....+ +..|.-+++... .. .......++++.++...+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksE-aI--pltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSE-AI--PLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCC-SH--HHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcc-cC--chHHHHHHHHhHHHHhCH
Confidence 34456677777665 578889999988887766554433 334444543321 11 112334566666654332
Q ss_pred HHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHH
Q 041408 237 YMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINA 316 (425)
Q Consensus 237 ~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~ 316 (425)
.++. +.+|.+..=.+- +++..+.+-..+|..++..+..-. .+++.-+..+|.+. +..-+-.
T Consensus 103 ---e~v~---~vVp~lfanyri------gd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk--d~~Dkl~ 163 (253)
T 2db0_A 103 ---ELVK---SMIPVLFANYRI------GDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK--NREDKLT 163 (253)
T ss_dssp ---HHHH---HHHHHHHHHSCC------CSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS--SHHHHHH
T ss_pred ---HHHH---hhHHHHHHHHhc------CCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC--ChHHHHH
Confidence 2333 567777766666 899999999999999988665321 36788899999977 7666666
Q ss_pred HHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChH
Q 041408 317 ALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPA 396 (425)
Q Consensus 317 A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~ 396 (425)
|+..+..+. +|.-+-+. -.+|-|..+|.+. +..+...|+.+|.+|+..+.--.+++ +..|-+ +...|..
T Consensus 164 aLnFi~alG---en~~~yv~-PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii-----~~kl~e-~~D~S~l 232 (253)
T 2db0_A 164 ALNFIEAMG---ENSFKYVN-PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV-----IKRLEE-LNDTSSL 232 (253)
T ss_dssp HHHHHHTCC---TTTHHHHG-GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH-----HHHHHH-CCCSCHH
T ss_pred HHHHHHHHh---ccCccccC-cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH-----HHHHHH-hcCcHHH
Confidence 666665544 45444444 3679999999886 88899999999999998443322221 123333 5566888
Q ss_pred HHHHHHHHHHHHhc
Q 041408 397 ADDRAILILSLICK 410 (425)
Q Consensus 397 ~~e~a~~~L~~l~~ 410 (425)
.+......|..|.-
T Consensus 233 v~~~V~egL~rl~l 246 (253)
T 2db0_A 233 VNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777766654
No 144
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.02 E-value=0.01 Score=62.16 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
++.++..|+-++..+...+++. +...+.++.+.++|.+.+. .++..|+.+|..++..+... .. ..++
T Consensus 161 ~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~----~V~~~a~~~l~~i~~~~~~~---~~---~~~~ 227 (621)
T 2vgl_A 161 MDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHL----GVVTAATSLITTLAQKNPEE---FK---TSVS 227 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCH----HHHHHHHHHHHHHHHHCHHH---HT---THHH
T ss_pred CHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCc----cHHHHHHHHHHHHHHhChHH---HH---HHHH
Confidence 3577888888888877655542 2225889999999965543 45899999999887544321 11 2444
Q ss_pred HHHHHHcccc--cccc---------CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc-------CC--
Q 041408 251 SFTWVLALDD--ESIE---------NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV-------IA-- 310 (425)
Q Consensus 251 ~Lv~lL~~~~--~~~~---------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-------~~-- 310 (425)
.++..|..-. ..++ .++..+...+.+|..++..++....... ..+++.++..+.+.+ .+
T Consensus 228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l-~~~L~~il~~~~~~~ks~~l~~~n~~ 306 (621)
T 2vgl_A 228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL-TECLETILNKAQEPPKSKKVQHSNAK 306 (621)
T ss_dssp HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH-HHHHHHHHHHHHSCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHHHHHhhccCcccccccccchH
Confidence 4444443100 0000 1567777777777777653221111000 012333332221110 01
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHH
Q 041408 311 QQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRI 390 (425)
Q Consensus 311 ~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll 390 (425)
..+.-.|+.++..+...++ +.. .++..|..+|.+. ++.++-.|+..|..++........+ . .-...++..|
T Consensus 307 ~aVl~ea~~~i~~l~~~~~----~~~-~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~~~~-~--~~~~~i~~~L 377 (621)
T 2vgl_A 307 NAVLFEAISLIIHHDSEPN----LLV-RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSHEAV-K--THIETVINAL 377 (621)
T ss_dssp HHHHHHHHHHHHHHCCCHH----HHH-HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTHHHH-H--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHH----HHH-HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcHHHH-H--HHHHHHHHHh
Confidence 1455556666666653221 111 3556677777654 6677777777777777643222222 2 1244555555
Q ss_pred h-cCChHHHHHHHHHHHHHhccCCChHHHHHHh
Q 041408 391 M-QVSPAADDRAILILSLICKFSGNFNFVVQEM 422 (425)
Q Consensus 391 ~-~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~ 422 (425)
. ..+...+..++.+|..++..+.- +.++.|.
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~~Nv-~~Iv~eL 409 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDRSNA-QQIVAEM 409 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHcChhhH-HHHHHHH
Confidence 5 44556677777777777765332 4555554
No 145
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.02 E-value=0.015 Score=50.34 Aligned_cols=190 Identities=8% Similarity=0.070 Sum_probs=133.2
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
.++..++.+|.+.- + .++.+|+.++..++..-++ +.. -.+..|..+++. +.........+.++.-
T Consensus 32 ~~l~~lI~~LDDDl---w-tV~kNAl~vi~~i~~~~~e---l~e---pl~~kL~vm~~k-----sEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 32 SVLKKLIELLDDDL---W-TVVKNAISIIMVIAKTRED---LYE---PMLKKLFSLLKK-----SEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp HHHHHHHHHTTCSC---H-HHHHHHHHHHHHHHTTCGG---GHH---HHHHHHHHHHHH-----CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHH---H-HHHHhHHHHHHHHHHHhHH---HHH---HHHHHHHHHHhh-----cccCchHHHHHHHHhH
Confidence 45677788775432 1 2489999999988764332 222 356667777775 3666666677788887
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
++....... .+++|.|..=..-| +++.+-+...+|..+.. +++-- .+++.-+..+|.+. +. +.
T Consensus 97 la~i~Pe~v-----~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltsk-d~---~D 160 (253)
T 2db0_A 97 MAKEKPELV-----KSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSK-NR---ED 160 (253)
T ss_dssp HHHHCHHHH-----HHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCS-SH---HH
T ss_pred HHHhCHHHH-----HhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC-Ch---HH
Confidence 776554322 25677777777888 99999999999988776 33322 24556677777654 42 23
Q ss_pred HHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCChHHHHHHh
Q 041408 359 ILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGNFNFVVQEM 422 (425)
Q Consensus 359 Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~~~~~v~e~ 422 (425)
=+.+|.-+..-+++.-..+. -.+|.|..+|...+..++..|+.+|.+++...+..|.+|.+.
T Consensus 161 kl~aLnFi~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~k 222 (253)
T 2db0_A 161 KLTALNFIEAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKR 222 (253)
T ss_dssp HHHHHHHHHTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 35667777777777766654 468999998888888999999999999999887777666554
No 146
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.00 E-value=0.033 Score=55.50 Aligned_cols=229 Identities=10% Similarity=0.057 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcC--cHHHHHHHHhhccc-------------CCCcccHHHHHHHHHhcCCChHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAG--VPRAMLTYIVNCCD-------------KNQVGGLEGALSILHFFKITSEY 237 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G--~i~~Lv~lL~s~~~-------------~~~~~~~~~Al~~L~~L~~~~~~ 237 (425)
+.+.-++..|..+.. .+++|..+.+.+ .+|.++.++...-. ..+.+.+-.++-++..|+.+.+.
T Consensus 183 ~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 183 DTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred chHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 444457777777764 678888887653 47777766653210 00123467778888889988875
Q ss_pred HHhhhhchhch--HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhccc-c-h---hHhhcchhHHHHHHHHhccc-cC
Q 041408 238 MKLSAFEIDKI--VESFTWVLALDDESIENHKEIKSHALRILKNIIQAAS-S-K---FLQRLKPQIFQNIIRVLKQR-VI 309 (425)
Q Consensus 238 ~~~~v~~~~g~--i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~-~-~---~~~~~~~g~i~~Lv~lL~~~-~~ 309 (425)
...+... +. ++.|+.+++. .....+.+-++.+|.||...+. + . .......++ +.++..|... -.
T Consensus 262 ~~~l~~~--~i~~~~~L~~i~k~-----s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~ 333 (480)
T 1ho8_A 262 ANELVQK--YLSDFLDLLKLVKI-----TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYS 333 (480)
T ss_dssp HHHHHTT--SHHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCS
T ss_pred HHHHHhc--chHHHHHHHHHHHh-----hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCC
Confidence 5555443 43 3677888886 3567788889999999987652 1 1 112222233 5566666543 22
Q ss_pred ChHHHHHHHHH-------HHHhCCCCC------------------------chHHHHh--hCchHHHHHHhhc-------
Q 041408 310 AQQGINAALKL-------MLDACPSGR------------------------NRMIMVE--SGAVFELIELELT------- 349 (425)
Q Consensus 310 ~~~~~~~A~~a-------L~~L~~~~~------------------------n~~~iv~--~G~v~~Lv~lL~~------- 349 (425)
|++..+.--.. +..+++.++ |..++-+ ..++..|+++|.+
T Consensus 334 Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~ 413 (480)
T 1ho8_A 334 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDV 413 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccc
Confidence 55554433222 122221111 2223322 3567889999974
Q ss_pred --cCCcchHHHHHHHHHHHhC-CHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 350 --ASEKKTTELILGILFHLCS-CADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 350 --~~~~~~~e~Al~~L~~L~~-~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
..|+.+...|+.=+..++. .++||..+ +.-||=..++++|.+.++.++.+|+.++-.+-.+
T Consensus 414 ~~s~d~~~laVAc~Digefvr~~P~gr~i~-~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 414 NAKQEKIIIQVALNDITHVVELLPESIDVL-DKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTHHHHH-HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEEeecccHHHHHHHCcchhHHH-HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 1257778888888999988 88888766 6678888889988888899999999998777654
No 147
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.94 E-value=0.00072 Score=47.77 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=39.7
Q ss_pred CcccCcCCccCCCCceecCCCc-----cccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGI-----TYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~-----t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
+.-.|.||++-..+|.+.||.. .|=+.||++|+...+ +.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-CCccCCCCCeee
Confidence 4457999998888888888653 688999999998643 578999998874
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.00095 Score=49.23 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=38.3
Q ss_pred ccCcCCccCCCCceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTA-ITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~-~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-.|+||.+++..=..- .|||.|=..||.+||.... ..+||.|+.+...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCCC
Confidence 5799999998643332 6999999999999998642 4789999988753
No 149
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.83 E-value=0.00098 Score=51.41 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=39.1
Q ss_pred cCcCCccCCCCce-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 74 ICPISLQIMKDPV-TAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 74 ~Cpi~~~~m~dPV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.||.|.-.+..=. ++||+|.||-.|+..|..++ ..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~--~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG--DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT--CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc--CCCCcCcCCeeee
Confidence 6899988777665 67999999999999999875 4899999988754
No 150
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.71 E-value=0.064 Score=48.89 Aligned_cols=238 Identities=11% Similarity=0.098 Sum_probs=152.3
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHhhhchhhhhHHhh-cCcHHHHHHHHhhcccCCCc--------ccHHHHHHHHHh
Q 041408 160 LQIIKLIKDIWKPELQTKTLIQLEVFAAENERNRKCMAE-AGVPRAMLTYIVNCCDKNQV--------GGLEGALSILHF 230 (425)
Q Consensus 160 ~~i~~lv~~l~s~~~~~~Al~~L~~la~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~--------~~~~~Al~~L~~ 230 (425)
+.+..++..+.+++.+..|+..|..--+..++---.+=. -|.+..|++=+-+-....++ .-..+|++.|.-
T Consensus 3 ~~i~qli~~L~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 3 EKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHHHTSSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 356677778888888888888775533222222222223 48877776655443322111 114778888888
Q ss_pred cCCChHHHHhhhhchhchHHHHHHHHccccccccCC---HHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhcc
Q 041408 231 FKITSEYMKLSAFEIDKIVESFTWVLALDDESIENH---KEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQ 306 (425)
Q Consensus 231 L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~---~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~ 306 (425)
++.+++....++.. .+.-.|--+|+.. ..+ .-.|-.+..++..|...++... ....+.++||..++.++.
T Consensus 83 vAshpetr~~Fl~a--~iplyLyPfL~t~----sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~ 156 (268)
T 2fv2_A 83 VASHPETRSAFLAA--HIPLFLYPFLHTV----SKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES 156 (268)
T ss_dssp HHHCTTTHHHHHHT--TGGGGTHHHHHCC----CCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHcCcchhhHHHHc--cchHHhhhhhccc----cCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh
Confidence 99888877777764 4444445555531 122 2356678889999987665433 344566899999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchHHHHh--------hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhh
Q 041408 307 RVIAQQGINAALKLMLDACPSGRNRMIMVE--------SGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLS 378 (425)
Q Consensus 307 ~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~--------~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~ 378 (425)
| +.-.+..|+-.+..+-.++.+-..+.. ..++..+|.-+...+++.+......+-..|+.++..|.++..
T Consensus 157 G--selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 157 G--SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp S--CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9 888888888888777666654444432 234455555555555788889999999999999999988854
Q ss_pred ccccHHHHH-----HHHhcCChHHHHHHHHHHHHH
Q 041408 379 HRAAIAVVT-----KRIMQVSPAADDRAILILSLI 408 (425)
Q Consensus 379 ~~g~i~~Lv-----~ll~~~s~~~~e~a~~~L~~l 408 (425)
. +|.-+ ..++++.+..+++-...|.++
T Consensus 235 ~---LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 235 C---LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp H---SCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred h---CcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence 1 22211 123345666777777776665
No 151
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.61 E-value=0.00092 Score=63.42 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=52.0
Q ss_pred ccCChhHHHHHHHHhhhhc-cccCCCCC---------CCcccCcCCccCCCC----cee----cCCCccccHHHHHHHHH
Q 041408 43 HKQKPQQQHIIILSLLFQM-DDHQDIEI---------PEYFICPISLQIMKD----PVT----AITGITYDRESIEHWLF 104 (425)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------p~~~~Cpi~~~~m~d----PV~----~~~g~t~~r~~I~~~~~ 104 (425)
+.+++-..-...+..++++ +=+++... ....-|+||...+.+ |.. ..|||.|-..||.+|+.
T Consensus 269 ~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 269 SNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp HTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred hhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHH
Confidence 4455555555666666777 32222111 133579999999987 533 36999999999999997
Q ss_pred cCCC--------CCCCCCCCCCCC
Q 041408 105 QGNN--------NAECPVTKQPLP 120 (425)
Q Consensus 105 ~~~~--------~~~cP~~~~~l~ 120 (425)
.... ...||.|+++++
T Consensus 349 s~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 349 TLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp HHHSSSCTTTCCEEECTTTCCEEE
T ss_pred hCCCccccccccCCCCCCCCCcCC
Confidence 5210 136999998874
No 152
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.49 E-value=0.032 Score=58.25 Aligned_cols=162 Identities=9% Similarity=-0.014 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHH-hhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 172 PELQTKTLIQLEVF-AAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 172 ~~~~~~Al~~L~~l-a~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
...+.+++..|-.+ ..|.+. ..+.+.+++++.+.+.. .+.-+.-.+..++..+++. +. -++.
T Consensus 52 ~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~~s~~~~----~Krl~YL~l~~~~~~~~e~---~~---L~iN 114 (621)
T 2vgl_A 52 GYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLLSSNRYT----EKQIGYLFISVLVNSNSEL---IR---LINN 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGGGCSCHH----HHHHHHHHHHHSCCCCHHH---HH---HHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHhcCCCHH----HHHHHHHHHHHHccCCcHH---HH---HHHH
Confidence 35667777766443 323211 24567777888765432 2555556666666554432 11 2455
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh--ccccCChHHHHHHHHHHHHhCCCC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL--KQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
.+.+-|++ .|+-.+..|+.+|.++...+ ++ ..+++.+.++| .+. ++-+|+.|+-++..+....
T Consensus 115 ~l~kDl~~------~n~~ir~lALr~L~~i~~~e-----~~--~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 115 AIKNDLAS------RNPTFMGLALHCIANVGSRE-----MA--EAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHS------CCHHHHHHHHHHHHHHCCHH-----HH--HHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCC------CCHHHHHHHHHHhhccCCHH-----HH--HHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhC
Confidence 67777776 89999999999999885421 11 35788999999 776 9999999999999988733
Q ss_pred CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 329 RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 329 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
... +-..+.++.|.++|.+. ++.++..|+.+|..++.
T Consensus 180 p~~--~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 180 PDL--VPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQ 216 (621)
T ss_dssp GGG--CCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hhh--cCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHH
Confidence 221 11248899999999775 88999999999999986
No 153
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0053 Score=59.03 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=53.1
Q ss_pred cccCcCCccCCCCceec-CCCcc--ccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 041408 72 YFICPISLQIMKDPVTA-ITGIT--YDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQA 137 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~-~~g~t--~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~ 137 (425)
.+.|||+...|..|+-. .|.|. |+...+.+...... .-.||+|++.+.. .+|+.+..+.+.+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~-~W~CPIC~k~~~~-~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIP-TWQCPVCQIDIAL-ENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSC-CCBCTTTCCBCCG-GGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCC-ceeCCCCCcccCH-HHeeEcHHHHHHHHh
Confidence 48999999999999965 79998 99988888776543 5789999999987 889998888776653
No 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.69 E-value=0.28 Score=53.17 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHH
Q 041408 296 IFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQ 375 (425)
Q Consensus 296 ~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~ 375 (425)
+|+.|+..+.+. .+..+|..|+.+|.-+..... ..++.++++|....++.++..|..+|..++... +...
T Consensus 578 aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn-~~~~ 647 (963)
T 4ady_A 578 AVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK-GLQS 647 (963)
T ss_dssp HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS-CCHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC-CcHH
Confidence 466666666543 266788888888887765443 357788887765448889999999999887643 2222
Q ss_pred HhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 376 FLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 376 ~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
++..|..+.......++..|+.+|..+.....+
T Consensus 648 ------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp ------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred ------HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 244666655555678888999999888776544
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.62 E-value=0.43 Score=52.08 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=140.2
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHhhhchh--hhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHH
Q 041408 162 IIKLIKDIWKPELQTKTLIQLEVFAAENER--NRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMK 239 (425)
Q Consensus 162 i~~lv~~l~s~~~~~~Al~~L~~la~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~ 239 (425)
+..+...+.+...-..|+..+..++..... ..+... .+.+|.++..+.+... .++..|-.++..+...- ..
T Consensus 56 ~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~dk~~----~v~~aa~~~~~~~~~~~--~~ 128 (986)
T 2iw3_A 56 FGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYI-VQLVPAICTNAGNKDK----EIQSVASETLISIVNAV--NP 128 (986)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHH-HTTHHHHHHHTTCSSH----HHHHHHHHHHHHHHHHS--CG
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccch-HHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHhC--CH
Confidence 344444454432227788888888754321 111111 1455665555543322 23555544444332100 01
Q ss_pred hhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc-hhHHHHHHHHhccccCChHHHHHHH
Q 041408 240 LSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK-PQIFQNIIRVLKQRVIAQQGINAAL 318 (425)
Q Consensus 240 ~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~~A~ 318 (425)
..+ ..++|.|+..|.+ .+.+..+..|..++..|+.... .+++.. ..+||.+-..+.+. .++++++|.
T Consensus 129 ~a~---~~~~~~~~~~~~~-----~~kw~~k~~~l~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~ 196 (986)
T 2iw3_A 129 VAI---KALLPHLTNAIVE-----TNKWQEKIAILAAFSAMVDAAK--DQVALRMPELIPVLSETMWDT--KKEVKAAAT 196 (986)
T ss_dssp GGH---HHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHH---HHHHHHHHHHhcc-----ccchHHHHHHHHHHHHHHHHhH--HHHHHhccchhcchHhhcccC--cHHHHHHHH
Confidence 122 1688999999986 3578999999999999997553 233222 46788888888877 889999999
Q ss_pred HHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHH
Q 041408 319 KLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAAD 398 (425)
Q Consensus 319 ~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~ 398 (425)
.++..+|..-+|+.. ...||.||+-+.+. .-...+...|..-.-..+--.-.. +-.+|.|.+-|...+...+
T Consensus 197 ~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 197 AAMTKATETVDNKDI---ERFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIK 268 (986)
T ss_dssp HHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhh
Confidence 999999987777643 35789999999753 223333444443333222111111 1246666666655577788
Q ss_pred HHHHHHHHHHhccCCChHHHHH
Q 041408 399 DRAILILSLICKFSGNFNFVVQ 420 (425)
Q Consensus 399 e~a~~~L~~l~~~~~~~~~~v~ 420 (425)
+.++-+.-|+|+--.+ ++.+.
T Consensus 269 r~~~~~~~n~~~lv~~-~~~~~ 289 (986)
T 2iw3_A 269 RKSAVIIDNMCKLVED-PQVIA 289 (986)
T ss_dssp HHHHHHHHHHHTTCCC-HHHHH
T ss_pred eeeEEEEcchhhhcCC-HHHHh
Confidence 8999999999997666 55443
No 156
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.57 E-value=0.1 Score=50.38 Aligned_cols=238 Identities=13% Similarity=0.046 Sum_probs=122.8
Q ss_pred CccHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHH
Q 041408 126 TPNHTLRRLIQAWCADNSAYGIDRIPTPKAPLSKLQIIKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPR 203 (425)
Q Consensus 126 ~pn~~l~~~I~~~~~~n~~~~~~~~p~~~~~~~~~~i~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~ 203 (425)
.+|..+|+++--+...-. +.+... .-.+..+.+.+.+ +-.+.-|++.|..+... +.-+ ...+
T Consensus 79 s~d~~lKrLvYLyl~~~~-------~~~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~ 142 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMS-------CIAEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIER 142 (355)
T ss_dssp CCCHHHHHHHHHHHHHHT-------TTSSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------CCHHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHH
Confidence 467889998777665422 111111 1223455556644 45667788888777532 1111 2234
Q ss_pred HHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhc
Q 041408 204 AMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQA 283 (425)
Q Consensus 204 ~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~ 283 (425)
.+-+.|.+.+ +.++..|+-....|....++ ++. ++++.+-.++.. .++.++-+|..+|..+...
T Consensus 143 ~lk~~L~d~~----pyVRk~A~l~~~kL~~~~pe---~v~---~~~~~l~~ll~d------~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 143 YMKQAIVDKV----PSVSSSALVSSLHLLKCSFD---VVK---RWVNEAQEAASS------DNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHTCSS----HHHHHHHHHHHHHHTTTCHH---HHH---TTHHHHHHHTTC------SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCC----HHHHHHHHHHHHHHhccCHH---HHH---HHHHHHHHHhcC------CCccHHHHHHHHHHHHHhh
Confidence 4444454443 34588887777777655543 232 688888888886 8999999999999999865
Q ss_pred ccchhHhhcchhHHHHHHHHhccc-cCChHHHHHHHHHHHHhCCCC-CchHHHHhhCchHHHHHHhhccCCcchHHHHHH
Q 041408 284 ASSKFLQRLKPQIFQNIIRVLKQR-VIAQQGINAALKLMLDACPSG-RNRMIMVESGAVFELIELELTASEKKTTELILG 361 (425)
Q Consensus 284 ~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~ 361 (425)
+. ..+..|+.-+..+ ..++=++-.-++.+..++..+ +. .....++.+...|... ++.+.-.|+.
T Consensus 207 d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~-~~aVvyEa~k 272 (355)
T 3tjz_B 207 DR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNK-HEMVVYEAAS 272 (355)
T ss_dssp CH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCS-SHHHHHHHHH
T ss_pred ch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 41 2345555555443 113444444444444444432 11 1234445566666654 6667767777
Q ss_pred HHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 362 ILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 362 ~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
++..+...+. .... .++..|..++.+..+..|-.|+..|..+....++
T Consensus 273 ~I~~l~~~~~---~~~~--~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 273 AIVNLPGCSA---KELA--PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp HHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred HHHhccCCCH---HHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 7777755221 1212 2455677767666778888899888888877655
No 157
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.56 E-value=0.4 Score=46.19 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=97.6
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNI 280 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L 280 (425)
..+.+++++.+.+.. .+.-..-.+.+++...++ .+ =++..+.+=+++ .|+-.|..|+++|.++
T Consensus 69 lf~~v~kl~~s~d~~----lKrLvYLyl~~~~~~~~e---~i----Lv~Nsl~kDl~~------~N~~iR~lALRtL~~I 131 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPT----LRRMCYLTIKEMSCIAED---VI----IVTSSLTKDMTG------KEDSYRGPAVRALCQI 131 (355)
T ss_dssp HHHHHHGGGGCCCHH----HHHHHHHHHHHHTTTSSC---GG----GGHHHHHHHHHS------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH----HHHHHHHHHHHhCCCHHH---HH----HHHHHHHhhcCC------CcHhHHHHHHHHHhcC
Confidence 345567777766532 244444455555544221 11 155677778887 8899999999999988
Q ss_pred HhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHH
Q 041408 281 IQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELIL 360 (425)
Q Consensus 281 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al 360 (425)
...+- . ..+.+.+-+.|.+. ++-+++.|+-+...|...... +++ +.+..+-+++.+. ++.++-.|+
T Consensus 132 ~~~~m------~-~~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~-n~~V~~~Al 197 (355)
T 3tjz_B 132 TDSTM------L-QAIERYMKQAIVDK--VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSD-NIMVQYHAL 197 (355)
T ss_dssp CCTTT------H-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCS-SHHHHHHHH
T ss_pred CCHHH------H-HHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCC-CccHHHHHH
Confidence 65431 1 25678888888888 999999999999999864432 333 6888999999775 788888999
Q ss_pred HHHHHHhCC
Q 041408 361 GILFHLCSC 369 (425)
Q Consensus 361 ~~L~~L~~~ 369 (425)
++|..++..
T Consensus 198 ~lL~ei~~~ 206 (355)
T 3tjz_B 198 GLLYHVRKN 206 (355)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999873
No 158
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.53 E-value=0.0057 Score=47.82 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.4
Q ss_pred CcccCcCCcc-CCCCcee--cCCCccccHHHHHHHHH
Q 041408 71 EYFICPISLQ-IMKDPVT--AITGITYDRESIEHWLF 104 (425)
Q Consensus 71 ~~~~Cpi~~~-~m~dPV~--~~~g~t~~r~~I~~~~~ 104 (425)
+++.|++|.+ .+++||. +.|||+||+.|++.+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 5899998 89999999999998543
No 159
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.34 E-value=0.015 Score=55.71 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCcccCcCCccCCCCceec-CCCcc--ccHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMKDPVTA-ITGIT--YDRESIEHWLFQGNNNAECPVTKQPLPKDLDLTPNHTLRRLIQA 137 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~-~~g~t--~~r~~I~~~~~~~~~~~~cP~~~~~l~~~~~l~pn~~l~~~I~~ 137 (425)
.-.+.|||+...|+.|+-. .|.|. |+...+.+...... .-.||.|++.+.. .+|..+..+.+.+..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~-~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKP-TWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSC-CCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCC-CeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 3357999999999999965 79998 99988888776543 5789999999987 888888887777653
No 160
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.30 E-value=2.1 Score=46.69 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=132.9
Q ss_pred HHHHHHhcC--hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHh
Q 041408 163 IKLIKDIWK--PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKL 240 (425)
Q Consensus 163 ~~lv~~l~s--~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~ 240 (425)
+.++..+.+ ..++..|-.++..+...-+. .++ ..++|.|+..|.+... + .....|+.+|..|+...+. .
T Consensus 98 ~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~--~a~--~~~~~~~~~~~~~~~k--w-~~k~~~l~~~~~~~~~~~~--~ 168 (986)
T 2iw3_A 98 PAICTNAGNKDKEIQSVASETLISIVNAVNP--VAI--KALLPHLTNAIVETNK--W-QEKIAILAAFSAMVDAAKD--Q 168 (986)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG--GGH--HHHHHHHHHHHHHCCC--H-HHHHHHHHHHHHHHHHSHH--H
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhccccc--h-HHHHHHHHHHHHHHHHhHH--H
Confidence 444444454 45555555566555543221 222 3568999999965532 1 2367788888888743322 1
Q ss_pred hhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHH
Q 041408 241 SAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKL 320 (425)
Q Consensus 241 ~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~a 320 (425)
+...-+.+||.+...+-. -.++++..|..++..+|..-+|+-. ...||.||+.+.++ + ....+...
T Consensus 169 ~~~~~~~~~p~~~~~~~d------~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p--~--~~~~~~~~ 234 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWD------TKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP--T--EVPETVHL 234 (986)
T ss_dssp HHHHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT--T--HHHHHHHH
T ss_pred HHHhccchhcchHhhccc------CcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh--h--hhHHHHHH
Confidence 222224688888888875 7889999999999999986666554 36799999999876 2 23344444
Q ss_pred HHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC---CHhhHHHHhhccccHHHHHHHHhcC-ChH
Q 041408 321 MLDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS---CADGRAQFLSHRAAIAVVTKRIMQV-SPA 396 (425)
Q Consensus 321 L~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~---~~e~r~~~~~~~g~i~~Lv~ll~~~-s~~ 396 (425)
|..-....+--..- =+=.+|.|..-|... +..++..++-+..|+|. ++..-..++- .-+|.|-+..-.. .++
T Consensus 235 l~~~tfv~~v~~~~-l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTPAT-LSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCHHH-HHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecchh-HHHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHH
Confidence 44433333311111 112557777777654 67788899999999997 3333333432 3455555533333 467
Q ss_pred HHHHHHHHHHHH
Q 041408 397 ADDRAILILSLI 408 (425)
Q Consensus 397 ~~e~a~~~L~~l 408 (425)
+++.|-.++.-|
T Consensus 311 ~r~~~~~a~~~l 322 (986)
T 2iw3_A 311 AREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 787766666555
No 161
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.20 E-value=2.8 Score=41.71 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHHhcccchhHhhcch-hHHHHHHHHhccc---------------cCChHHHHHHHHHHHHhCCCCC
Q 041408 266 HKEIKSHALRILKNIIQAASSKFLQRLKP-QIFQNIIRVLKQR---------------VIAQQGINAALKLMLDACPSGR 329 (425)
Q Consensus 266 ~~~~~~~A~~~L~~L~~~~~~~~~~~~~~-g~i~~Lv~lL~~~---------------~~~~~~~~~A~~aL~~L~~~~~ 329 (425)
+...+--++.+|..|...+..+..+.... +.++++++++... ....+.+=.++-++|-|+..++
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 44556678999999999998888776543 4688888766521 0123556788899999999988
Q ss_pred chHHHHhhCch--HHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 330 NRMIMVESGAV--FELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 330 n~~~iv~~G~v--~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
....+...+.. +.|++++......++...++++|.||....
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 77778777754 778888887656789999999999999854
No 162
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.35 Score=44.61 Aligned_cols=182 Identities=11% Similarity=0.095 Sum_probs=109.3
Q ss_pred HHHHhcCh--hHHHHHHHHHHHHhhhchhh--hhHHh-hc-CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCC--h-
Q 041408 165 LIKDIWKP--ELQTKTLIQLEVFAAENERN--RKCMA-EA-GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKIT--S- 235 (425)
Q Consensus 165 lv~~l~s~--~~~~~Al~~L~~la~~~~~~--r~~i~-~~-G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~--~- 235 (425)
+-.++.+. ..|.+|+..|..+....+.. ..... .. ..++.+-..+.+.+. .++..++.+|..+... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~----~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV----VAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH----HHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHhhhh
Confidence 34556544 67888998887765432211 11111 11 234455556654433 4478888777765421 1
Q ss_pred ---HHHHhhhhchhchHHHHHHH-HccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCCh
Q 041408 236 ---EYMKLSAFEIDKIVESFTWV-LALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQ 311 (425)
Q Consensus 236 ---~~~~~~v~~~~g~i~~Lv~l-L~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 311 (425)
........ ..+++.|+.- |.+ ....++..|..++..++...... ..+++.++..+.+. +|
T Consensus 90 ~~~~~~~~~~~--~~~l~~lveK~l~~------~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~K--np 153 (278)
T 4ffb_C 90 SLKNAHNITLI--STWTPLLVEKGLTS------SRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKK--LP 153 (278)
T ss_dssp -CCHHHHHHHH--HHHHHHHHHHTSSC------CCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCS--CH
T ss_pred hcccchhHHHH--HHHHHHHHHHHhcC------ccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhcc--CH
Confidence 11111122 2577878765 665 77888889988888776543221 12456677778887 99
Q ss_pred HHHHHHHHHHHHhCCC--C--CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 312 QGINAALKLMLDACPS--G--RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 312 ~~~~~A~~aL~~L~~~--~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..++..|..+... . -+....+. .+++.+..+|.+. ++.+++.|..++..+..
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 9999999888876531 1 12222222 3556777888775 89999999999988876
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.60 E-value=1.2 Score=41.95 Aligned_cols=157 Identities=11% Similarity=-0.024 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHH-HHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAML-TYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv-~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~ 251 (425)
+.+.-++..+|.++. ++..-..+.+.+.-..++ .++..-..+..+..+--+++++.|+-.+.....-++.....+++.
T Consensus 117 ~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~ 195 (304)
T 3ebb_A 117 DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSH 195 (304)
T ss_dssp TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHH
T ss_pred HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 445556666666554 333333443332223333 232221111112236778899999877766544444332245666
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCch
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNR 331 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~ 331 (425)
+...+.+ .+...+..++.++.|++.........-....++..+..++... .+.++.-.++.||.+|...+...
T Consensus 196 ~~~~~~~------~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~~~~ 268 (304)
T 3ebb_A 196 AIELKSG------SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLISDDSNA 268 (304)
T ss_dssp HHGGGSS------CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcC------CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCChhH
Confidence 6655544 6889999999999999875321111001112455555666543 47888889999999999876655
Q ss_pred HHHHhh
Q 041408 332 MIMVES 337 (425)
Q Consensus 332 ~~iv~~ 337 (425)
..+.+.
T Consensus 269 ~~lak~ 274 (304)
T 3ebb_A 269 VQLAKS 274 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 164
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.32 E-value=0.63 Score=50.41 Aligned_cols=141 Identities=11% Similarity=0.033 Sum_probs=93.7
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
++..|+..+.. ..+..++..++..|..+..++. ..++.+++.|... .++-+|..|+.++.--+..
T Consensus 508 ai~~LL~~~~e-----~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~-~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 508 AIHDMFTYSQE-----TQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLAS-DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhc-----cCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC
Confidence 45556665544 2566777777777766544332 3467888888754 3778888888887655544
Q ss_pred CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc-CChHHHHHHHHHHH
Q 041408 328 GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ-VSPAADDRAILILS 406 (425)
Q Consensus 328 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~-~s~~~~e~a~~~L~ 406 (425)
..|. .+|..|++.+.+..+..++..|+.+|..+..... ..++.++++|.. +++.++..|..+|-
T Consensus 573 TGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 573 TGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp SCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4443 3566777777665467788889888988765432 235666665544 46788888888888
Q ss_pred HHhccCCChHHHH
Q 041408 407 LICKFSGNFNFVV 419 (425)
Q Consensus 407 ~l~~~~~~~~~~v 419 (425)
.++...++ ..++
T Consensus 638 li~aGn~~-~~ai 649 (963)
T 4ady_A 638 IACAGKGL-QSAI 649 (963)
T ss_dssp HHTSSSCC-HHHH
T ss_pred HhccCCCc-HHHH
Confidence 88877666 4444
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.91 E-value=0.96 Score=41.16 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCc-ccHHHHHHHHHhcCC-ChHHHHhhhhchhchHHH
Q 041408 174 LQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQV-GGLEGALSILHFFKI-TSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 174 ~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~-~~~~~Al~~L~~L~~-~~~~~~~~v~~~~g~i~~ 251 (425)
..+.|+.-|..+| .+++.|..+.++++.-.|-.+|...+..-.. ..+-.++++++.|.. ++.+.....-+. ++||.
T Consensus 72 RVcnaLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t-Eiipl 149 (268)
T 2fv2_A 72 RVCNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTT-EIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT-THHHH
T ss_pred HHHHHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhh-hHHHH
Confidence 3467777788887 4889999999999988899998655432111 235667888888764 333333333333 89999
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcch-------hHHHHHHHHh-ccccCChHHHHHHHHHHHH
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKP-------QIFQNIIRVL-KQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~-------g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~ 323 (425)
..+.+.. |+.-.|.-|..++..+...+..-.-+.... .++..+|.-+ +++ +++.-+...++-..
T Consensus 150 CLrime~------GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p--s~RLLKhiircYlR 221 (268)
T 2fv2_A 150 CLRIMES------GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP--SARLLKHVVRCYLR 221 (268)
T ss_dssp HHHHHHH------SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC--CHHHHHHHHHHHHH
T ss_pred HHHHHhh------ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH
Confidence 9999998 899999999999999987766443332221 2333333333 444 88999999999999
Q ss_pred hCCCCCchHHHHh
Q 041408 324 ACPSGRNRMIMVE 336 (425)
Q Consensus 324 L~~~~~n~~~iv~ 336 (425)
|+.++..+..+-.
T Consensus 222 Lsdn~rar~aL~~ 234 (268)
T 2fv2_A 222 LSDNPRAREALRQ 234 (268)
T ss_dssp HTTSHHHHHHHHH
T ss_pred HhcCHHHHHHHHH
Confidence 9998888777664
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.79 E-value=1.2 Score=41.92 Aligned_cols=188 Identities=14% Similarity=0.022 Sum_probs=108.9
Q ss_pred cHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchh--chHHHHHHHHccccccccCCHHHHHHHHHHHH
Q 041408 201 VPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEID--KIVESFTWVLALDDESIENHKEIKSHALRILK 278 (425)
Q Consensus 201 ~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~--g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~ 278 (425)
.+..+.+++..+.. .+-.++.+|..+..+......+..+.. .++..+...+.. ..++..+.-+++++.
T Consensus 104 ~l~~l~kil~WP~~-----~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~p~n~ml~lR~l~ 173 (304)
T 3ebb_A 104 QLQILWKAINCPED-----IVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNP-----KGKPANQLLALRTFC 173 (304)
T ss_dssp HHHHHHHHHTSCTT-----TCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCT-----TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHH-----hHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCC-----CCChHHHHHHHHHHH
Confidence 45666776644432 266777777776666554332222210 122233343433 245666788899999
Q ss_pred HHHhcccchhHhhcc-hhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC---CchHHHHhhCchHHHHHHhhccCCcc
Q 041408 279 NIIQAASSKFLQRLK-PQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG---RNRMIMVESGAVFELIELELTASEKK 354 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~ 354 (425)
|+-.....+..+... ..+++.+...+.+. +..++-+++.+++|++..- ..... ..-++..+..++....|.+
T Consensus 174 NlF~~~~g~~~l~~~~~~il~~~~~~~~~~--nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~E 249 (304)
T 3ebb_A 174 NCFVGQAGQKLMMSQRESLMSHAIELKSGS--NKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLE 249 (304)
T ss_dssp HGGGSHHHHHHHHHTHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHH
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHH
Confidence 998877766554322 23555555555544 7789999999999998621 11111 1124455555665545788
Q ss_pred hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCC--hHHHHHHHH
Q 041408 355 TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVS--PAADDRAIL 403 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s--~~~~e~a~~ 403 (425)
+.-+++-+|.+|...+....++.. .-++...++.+...+ .++.+.|-.
T Consensus 250 alyR~LvALGtL~~~~~~~~~lak-~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 250 ATFRLLVALGTLISDDSNAVQLAK-SLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHHHHHH-HcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 899999999999986544444444 334556565555542 344444433
No 167
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.41 E-value=0.13 Score=46.69 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=38.9
Q ss_pred cccCcCCccCCCCceecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAI-TGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~-~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-..|.+|+++..-=+.-+ |++.|-..|+.+|+...+ ...||.|+.+.+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-SCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-CCCCCCCCCCCCC
Confidence 457999999987544433 899999999999998643 5789999988754
No 168
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.09 E-value=2.5 Score=42.05 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELI 344 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv 344 (425)
++...+.-|+..+...-..-.+.. ..+|..+++|..+. +..+|..|.+.|..+|.. ++..+++ ..|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck~-~~i~kia-----DvL~ 106 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDE--DVSIRRQAIKELPQFATG-ENLPRVA-----DILT 106 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCS--SHHHHHHHHHHGGGGCCT-TCHHHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcc--cHHHHHHHHHhhHHHhhh-hhhhhHH-----HHHH
Confidence 678888888888877765444322 24688999999988 999999999999999988 6655554 6889
Q ss_pred HHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHH
Q 041408 345 ELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILS 406 (425)
Q Consensus 345 ~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~ 406 (425)
++|.+. +..-....-.+|..|.... ..+.+..|...+..+.+..++.++..|.
T Consensus 107 QlLqtd-d~~E~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTD-DSAEFNLVNNALLSIFKMD--------AKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhcc-chHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 999875 5444444445555554411 1123334444455566677777777763
No 169
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.86 E-value=1.8 Score=39.78 Aligned_cols=101 Identities=7% Similarity=0.063 Sum_probs=75.8
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP 326 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~ 326 (425)
-++|.|+.-+.. ....+|..+-.+|..++..- --..+++.++.-+++. +.+.|+..+..|..+-.
T Consensus 132 ~~lP~LveKlGd------~k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 132 AFVPYLLLKTGE------AKDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSK--NARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHGGGC------SSHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHH
Confidence 478889888875 67778888888887776421 1124667777778877 99999999999888764
Q ss_pred -CCCchHHHHhhCch---HHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 327 -SGRNRMIMVESGAV---FELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 327 -~~~n~~~iv~~G~v---~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
++-. -..++ |.+..++.+. |..++..|+.++..+..
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 2222 24578 9999999885 88999999999987654
No 170
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.21 E-value=1 Score=49.67 Aligned_cols=143 Identities=6% Similarity=0.020 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc---CChHHHHHHHHHHHHhCCCCCchHHHHhhCchH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV---IAQQGINAALKLMLDACPSGRNRMIMVESGAVF 341 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~ 341 (425)
.+...++.+++++..++.+-......-.-..+++.|+.++.... ....++..++++|...+..-.. ....++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-----~~~~L~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-----HWNFLR 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-----cHHHHH
Confidence 57889999999999998765432111111357888999886420 0233445666777766542211 122355
Q ss_pred HHHHHhhcc---CCcchHHHHHHHHHHHhCCHhhHHHHhh-c----cccHHHHHHHH----hcCChHHHHHHHHHHHHHh
Q 041408 342 ELIELELTA---SEKKTTELILGILFHLCSCADGRAQFLS-H----RAAIAVVTKRI----MQVSPAADDRAILILSLIC 409 (425)
Q Consensus 342 ~Lv~lL~~~---~~~~~~e~Al~~L~~L~~~~e~r~~~~~-~----~g~i~~Lv~ll----~~~s~~~~e~a~~~L~~l~ 409 (425)
+++..|..+ +++.+++.|+.++.+||. +.+..+.. + ..-++.+++.+ .+........+..++..+.
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 555554332 256799999999999997 23333321 0 11233333323 2345666677888888888
Q ss_pred ccCCC
Q 041408 410 KFSGN 414 (425)
Q Consensus 410 ~~~~~ 414 (425)
...++
T Consensus 618 ~~~~~ 622 (1023)
T 4hat_C 618 SEERS 622 (1023)
T ss_dssp TTCCS
T ss_pred HhCCC
Confidence 87776
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.84 E-value=3.3 Score=37.09 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--c-hHHHHh-------
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--N-RMIMVE------- 336 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n-~~~iv~------- 336 (425)
...+..++.+|..+.........+....+++..|+..|.+. ++.++..++..|..+|..++ + ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 45566788888888776655555556667899999999877 99999999999999998543 5 444433
Q ss_pred ---hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh---hHHHHhh--ccccHHHHHHHHhcC
Q 041408 337 ---SGAVFELIELELTASEKKTTELILGILFHLCSCAD---GRAQFLS--HRAAIAVVTKRIMQV 393 (425)
Q Consensus 337 ---~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e---~r~~~~~--~~g~i~~Lv~ll~~~ 393 (425)
..-..++|+.|.+..+.+.+..++..+..+...++ .|..+.. ...|+..+++.+...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~ 210 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 210 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhcc
Confidence 23566678777654344555555555555555443 3333321 124577777767654
No 172
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=89.27 E-value=9.4 Score=36.44 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNI 300 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 300 (425)
...+..+|..|..+.+.....+.. +++..+..+.+- .|.+.......+|...+...+-+..- . ...+|.+
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~--DGv~~I~TvinY------pN~~l~RaG~KLLLQVSDaksL~~t~-L-~e~LPFi 329 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRS--DGVGAITTVVQY------PNNDLIRAGCKLLLQVSDAKALAKTP-L-ENILPFL 329 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHT--THHHHHHHHTTS------SCHHHHHHHHHHHHHHTTCGGGGTSC-C-TTHHHHH
T ss_pred HHHHHHHHHHHhcccccccceeec--ccceeEEEEeec------CCcHHHHhhhheeeeecchHHHhhcc-c-cccchHH
Confidence 455667777777777766667765 678888888887 78888888999998887655433321 2 3578999
Q ss_pred HHHhccccCChHHHHHHHHHHHHhCCCCC-chHHHHhhCchHHHHHHhhccC------CcchHHHHHHHHHHH
Q 041408 301 IRVLKQRVIAQQGINAALKLMLDACPSGR-NRMIMVESGAVFELIELELTAS------EKKTTELILGILFHL 366 (425)
Q Consensus 301 v~lL~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~iv~~G~v~~Lv~lL~~~~------~~~~~e~Al~~L~~L 366 (425)
+..+.-. .+.++.=.....|.|...+.. -+...+..|+|+.|-..+...+ +..-+..|+++++|-
T Consensus 330 ~~~i~~h-~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 330 LRLIEIH-PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHC-CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHhccC-CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 9888632 277888899999999998775 5556688999999998885421 223344555555543
No 173
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.64 E-value=17 Score=39.54 Aligned_cols=179 Identities=8% Similarity=0.054 Sum_probs=103.5
Q ss_pred cccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhccc---------chh
Q 041408 218 VGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAAS---------SKF 288 (425)
Q Consensus 218 ~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~---------~~~ 288 (425)
+.++..|+++|+.++..- ..... ..+++.++..|.. .+..++..|+.+|.+++...+ .+.
T Consensus 472 p~vr~~a~~~lg~~~~~~--~~~~l---~~~l~~l~~~L~d------~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~ 540 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQL--TKAQL---IELMPILATFLQT------DEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540 (960)
T ss_dssp HHHHHHHHHHHHHTGGGS--CHHHH---HHHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGG
T ss_pred ceehHHHHHHHHHHHhhC--CHHHH---HHHHHHHHHHhCC------CChhHHHHHHHHHHHHHhcccccccccccccHH
Confidence 456888999999887531 11222 2578888888876 689999999999999987422 111
Q ss_pred Hhh-cchhHHHHHHHHhccccCC-hH--HHHHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhc----cCCcchHHHH
Q 041408 289 LQR-LKPQIFQNIIRVLKQRVIA-QQ--GINAALKLMLDACPS-GRNRMIMVESGAVFELIELELT----ASEKKTTELI 359 (425)
Q Consensus 289 ~~~-~~~g~i~~Lv~lL~~~~~~-~~--~~~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~----~~~~~~~e~A 359 (425)
.+. .-..+++.|+.++.....+ ++ ..+.+..+|..++.. .+.....+. ..++.|+..+.. .+++.....+
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 111 1135777777887653000 11 335666666665431 121111121 245666665543 2244555667
Q ss_pred HHHHHHHhCC--HhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 041408 360 LGILFHLCSC--ADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICK 410 (425)
Q Consensus 360 l~~L~~L~~~--~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~ 410 (425)
+.+|..++.. ++....+.. ..+|.+...|........+.+..++..+..
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 7788777763 344444432 356777776665544555666666655543
No 174
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=88.19 E-value=7.1 Score=35.55 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=92.6
Q ss_pred hHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccc-----hhHhhcchhHHHHHHHH-hccccCChHHHHHHHHHH
Q 041408 248 IVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASS-----KFLQRLKPQIFQNIIRV-LKQRVIAQQGINAALKLM 321 (425)
Q Consensus 248 ~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~~~~g~i~~Lv~l-L~~~~~~~~~~~~A~~aL 321 (425)
..+.+-..+.. .|..++..++.+|..++..-.. ......-..++|.|+.= |.+. .+.++..|..++
T Consensus 56 ~~~~lkk~l~D------sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l 127 (278)
T 4ffb_C 56 DPTLFAQYITD------SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCI 127 (278)
T ss_dssp CTHHHHHHTTC------SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhcc------chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHH
Confidence 44555566664 8999999999999988764221 11111113567777754 6666 788899999988
Q ss_pred HHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH--h--hHHHHhhccccHHHHHHHHhcCChHH
Q 041408 322 LDACPSGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCA--D--GRAQFLSHRAAIAVVTKRIMQVSPAA 397 (425)
Q Consensus 322 ~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~--e--~r~~~~~~~g~i~~Lv~ll~~~s~~~ 397 (425)
..++........+ +..++..+... ++.++..++..|..+...- . .-...+. ..++.+.+++-+.+..+
T Consensus 128 ~~~~~~~~~~~~~-----~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~V 199 (278)
T 4ffb_C 128 LSLCGLDTSITQS-----VELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLP--ELLKHVPQLAGHGDRNV 199 (278)
T ss_dssp HHHHHTSSSSHHH-----HHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH--HHGGGHHHHHTCSSHHH
T ss_pred HHHHHhcCcHHHH-----HHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHH--HHHHHHHHHHhCCcHHH
Confidence 8776533322222 23444455554 7888888888888876421 0 1111111 23445666566667899
Q ss_pred HHHHHHHHHHHhccCC
Q 041408 398 DDRAILILSLICKFSG 413 (425)
Q Consensus 398 ~e~a~~~L~~l~~~~~ 413 (425)
|..|..++..+.+.-+
T Consensus 200 R~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 200 RSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999988877544
No 175
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.32 E-value=1.2 Score=45.43 Aligned_cols=215 Identities=7% Similarity=0.013 Sum_probs=128.1
Q ss_pred HHHHHhcCh--hHHHHHHHHHHHHhhhch--hhhhHHhhcCcHHHHHHHHhhc-c-----cCCCcccHHHHHHHHHhcCC
Q 041408 164 KLIKDIWKP--ELQTKTLIQLEVFAAENE--RNRKCMAEAGVPRAMLTYIVNC-C-----DKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 164 ~lv~~l~s~--~~~~~Al~~L~~la~~~~--~~r~~i~~~G~i~~Lv~lL~s~-~-----~~~~~~~~~~Al~~L~~L~~ 233 (425)
.|+..|-++ +.+=-|+-.|+.+.+.+. ..|..-......-.|+.+|.-. . +.+=..++|.|+.+|+.+ .
T Consensus 178 ~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~ 256 (800)
T 3oc3_A 178 QISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-Y 256 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-T
T ss_pred HHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-H
Confidence 444555443 555556677777665543 1222111113344444444321 1 011013578888888877 4
Q ss_pred ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHH
Q 041408 234 TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQG 313 (425)
Q Consensus 234 ~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 313 (425)
+-+.. . .++..++..+.. ..++++..+.-.|.++.. .+..-.++++.++.-|.+. +.++
T Consensus 257 hLp~e------~-~IL~qLV~~l~~------~~WEVRHGGLLGLKYL~D------LL~~Ld~Vv~aVL~GL~D~--DDDV 315 (800)
T 3oc3_A 257 PLIGP------N-DIIEQLVGFLDS------GDWQVQFSGLIALGYLKE------FVEDKDGLCRKLVSLLSSP--DEDI 315 (800)
T ss_dssp TTSCS------C-CHHHHHTTGGGC------SCHHHHHHHHHHHHHTGG------GCCCHHHHHHHHHHHTTCS--SHHH
T ss_pred hCChh------H-HHHHHHHhhcCC------CCeeehhhhHHHHHHHHH------HHHHHHHHHHHHHhhcCCc--ccHH
Confidence 32211 1 455566655555 789999999999999911 1111257899999999988 8999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCC-cchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhc
Q 041408 314 INAALKLMLDACPSGRNRMIMVESGAVFELIELELTASE-KKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQ 392 (425)
Q Consensus 314 ~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~-~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~ 392 (425)
+..|+.+|.-++ .++... .++..+.+.|.+.+| ...+......|+.|+..+.. ......-+|.|--.+.+
T Consensus 316 RAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 999999999988 222222 344566777765433 34566667888888876532 11223456666666666
Q ss_pred CChHHHHHHHHHHHHHh
Q 041408 393 VSPAADDRAILILSLIC 409 (425)
Q Consensus 393 ~s~~~~e~a~~~L~~l~ 409 (425)
....++..++.+|..+.
T Consensus 387 tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SSHHHHHHHHHHTTTCC
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 66778877777776655
No 176
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=86.53 E-value=5.9 Score=36.33 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHHHhc---ccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchH
Q 041408 265 NHKEIKSHALRILKNIIQA---ASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVF 341 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~---~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~ 341 (425)
.|..+...+..+|..+... .+.+.......-++|.|+.-+-+. ...+|+.+-.+|..++.. .--..+++
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v------~~~~~v~~ 170 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV------VGPLKMTP 170 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH------HCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH------CCHHHHHH
Confidence 6777777887777776431 111111111134789999988766 777888888877776531 11123455
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccH---HHHHHHHhcCChHHHHHHHHHHHHHhccCCC
Q 041408 342 ELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAI---AVVTKRIMQVSPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 342 ~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i---~~Lv~ll~~~s~~~~e~a~~~L~~l~~~~~~ 414 (425)
.+++-+.+. +...++.++..+..+-... |-. ...++ |.+.+++-..+..++..|+.++..+..+.++
T Consensus 171 ~l~~g~ksK-N~R~R~e~l~~l~~li~~~-G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 171 MLLDALKSK-NARQRSECLLVIEYYITNA-GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHGGGCS-CHHHHHHHHHHHHHHHHHH-CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHHhc-CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 666666665 7888888888888886521 222 13467 8888866666778999999999988888776
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=85.92 E-value=18 Score=34.84 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=94.6
Q ss_pred hHHhhcCcHHHHHHHHhhcccCC-------CcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCC
Q 041408 194 KCMAEAGVPRAMLTYIVNCCDKN-------QVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENH 266 (425)
Q Consensus 194 ~~i~~~G~i~~Lv~lL~s~~~~~-------~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~ 266 (425)
+.++ .+|+..|+.+|..-.... +...+..++..|..+.-.......++.. +..|..++..|.+ .+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~-~~~i~~l~~~L~s------~~ 175 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLET-EEGILLLVRAMDP------AV 175 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTC-SSHHHHHHHTCCT------TS
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcC-hHHHHHHHHHhCC------Cc
Confidence 3444 678899999986432111 1123556777777777666666677765 5899999999987 88
Q ss_pred HHHHHHHHHHHHHHHhccc--c-hhHh--hc-------chhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC-----
Q 041408 267 KEIKSHALRILKNIIQAAS--S-KFLQ--RL-------KPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR----- 329 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~--~-~~~~--~~-------~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~----- 329 (425)
+.++..+..+|..+|..+. + ...+ +. +..-+.+++..|+++ .+.+.+.++...+-.+..+.+
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN~li~~~~dl~~R 254 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPAEELDFR 254 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999998764 2 1111 11 112256788888764 256666666665555555443
Q ss_pred --chHHHHhhCchHHHHHHhhcc
Q 041408 330 --NRMIMVESGAVFELIELELTA 350 (425)
Q Consensus 330 --n~~~iv~~G~v~~Lv~lL~~~ 350 (425)
-|..+...|..+.+-. |...
T Consensus 255 ~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 255 VHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp HHHHHHHHHTTHHHHHHH-HTTS
T ss_pred HHHHHHHHHCChHHHHHH-HhcC
Confidence 3445556777766655 5543
No 178
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=85.86 E-value=2.3 Score=38.19 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=59.4
Q ss_pred hCchHHHHHHhhcc----------CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHH
Q 041408 337 SGAVFELIELELTA----------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILS 406 (425)
Q Consensus 337 ~G~v~~Lv~lL~~~----------~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~ 406 (425)
.|++..|+++|..- .+......++.+|..+.....|...++.+..++..++..|...+...+..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 45556666666431 02345667889999999999999999999998988888776667788889999999
Q ss_pred HHhccCC
Q 041408 407 LICKFSG 413 (425)
Q Consensus 407 ~l~~~~~ 413 (425)
.+|..++
T Consensus 122 ~lc~~~~ 128 (233)
T 2f31_A 122 ALCILPQ 128 (233)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 9998765
No 179
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=84.71 E-value=11 Score=40.96 Aligned_cols=217 Identities=7% Similarity=-0.055 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcc-cCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCC-DKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVES 251 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~-~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~ 251 (425)
..+..|+..+..++.+..... ...++.++.++..-. .+.++.++..++++|+.++..-......+ ..+++.
T Consensus 479 ~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l---~~vl~~ 550 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI---PPAINL 550 (971)
T ss_dssp HHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH---HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHH
Confidence 456667788888776533221 234555555442221 11234568888999988763111111122 145566
Q ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC--CC
Q 041408 252 FTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS--GR 329 (425)
Q Consensus 252 Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~--~~ 329 (425)
++..|. +.++..|+.++.+++..-..... -.-.+++..|..++..+..+...+..+..++..+... .+
T Consensus 551 l~~~l~---------~~v~~~A~~al~~l~~~~~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~ 620 (971)
T 2x1g_F 551 LVRGLN---------SSMSAQATLGLKELCRDCQLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE 620 (971)
T ss_dssp HHHHHH---------SSCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHhC---------hHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence 665552 34678999999999964332211 1113566677777776423567888888888877653 24
Q ss_pred chHHHHhhCchHHHHHHhhcc---C--CcchHHHHHHHHHHHh---CCHhh--------------HHHHhhccccHHHHH
Q 041408 330 NRMIMVESGAVFELIELELTA---S--EKKTTELILGILFHLC---SCADG--------------RAQFLSHRAAIAVVT 387 (425)
Q Consensus 330 n~~~iv~~G~v~~Lv~lL~~~---~--~~~~~e~Al~~L~~L~---~~~e~--------------r~~~~~~~g~i~~Lv 387 (425)
.+....+ ..+++++..+..- + +..........|..|+ ..-.. -..+. ...++.+.
T Consensus 621 ~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~ 697 (971)
T 2x1g_F 621 EIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFK 697 (971)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHH
Confidence 4444333 3556666655421 1 1112233334444433 21000 01111 23456666
Q ss_pred HHHhcC--ChHHHHHHHHHHHHHhc
Q 041408 388 KRIMQV--SPAADDRAILILSLICK 410 (425)
Q Consensus 388 ~ll~~~--s~~~~e~a~~~L~~l~~ 410 (425)
.++... +....+.+..++..++.
T Consensus 698 ~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 698 RIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHH
Confidence 655332 55777888888877654
No 180
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.57 E-value=6.8 Score=37.97 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--c-hHHHHh-------
Q 041408 267 KEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--N-RMIMVE------- 336 (425)
Q Consensus 267 ~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n-~~~iv~------- 336 (425)
......++.+|..+.........+....+++..|+..|... ++.++..++..|..+|..++ + ...+.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 45566778888888766555555555567889999999877 89999999999999998543 4 333332
Q ss_pred ---hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHh---hH----HHHhhccccHHHHHHHHhcC
Q 041408 337 ---SGAVFELIELELTASEKKTTELILGILFHLCSCAD---GR----AQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 337 ---~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e---~r----~~~~~~~g~i~~Lv~ll~~~ 393 (425)
..-..++|+.|..+.+.+.+..++..+..|...++ .| ..+.. .|+..+++.|...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~--~GL~~il~~Lr~~ 214 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR--LGLHQVLQELREI 214 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH--TTHHHHHHHHTTC
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CChHHHHHHHhcc
Confidence 34666788888654345555555555555665443 33 33432 4567777767653
No 181
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.22 E-value=17 Score=39.42 Aligned_cols=182 Identities=7% Similarity=0.066 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChH-------H-HHhhh
Q 041408 171 KPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSE-------Y-MKLSA 242 (425)
Q Consensus 171 s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~-------~-~~~~v 242 (425)
.+-.+..|++.|..++..- ..+.+ ..+++.++..|.+.+ ..++..|+.+|.++....+ . .+..+
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~----~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l 542 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDE----YVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSC----HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT
T ss_pred CceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHhcccccccccccccHHHh
Confidence 4467889999999887642 11111 245677777775432 2458999999999875321 1 11212
Q ss_pred h-chhchHHHHHHHHccccccccC-CH-H--HHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcc---ccCChHHH
Q 041408 243 F-EIDKIVESFTWVLALDDESIEN-HK-E--IKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQ---RVIAQQGI 314 (425)
Q Consensus 243 ~-~~~g~i~~Lv~lL~~~~~~~~~-~~-~--~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~~~~~ 314 (425)
. ..+.+++.|+.+++. .+ .+ . ....+..+|..++........-.. ..+++.|+..+.. .+.++..+
T Consensus 543 ~p~l~~ll~~L~~ll~~-----~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~ 616 (960)
T 1wa5_C 543 SNSTEILLKNLIALILK-----HGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFT 616 (960)
T ss_dssp TTTHHHHHHHHHHHHHT-----TCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHHh-----ccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2 123577788888875 11 11 1 223555666665443221111111 2456666666643 12356677
Q ss_pred HHHHHHHHHhCCC-CCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHh
Q 041408 315 NAALKLMLDACPS-GRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLC 367 (425)
Q Consensus 315 ~~A~~aL~~L~~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~ 367 (425)
...+.+|..+... ......-.....+|++..+|... .....+.+..++..+.
T Consensus 617 ~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHH
Confidence 7778888877764 22233334556888888888764 4556777777766665
No 182
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.22 E-value=3.6 Score=39.96 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHhhCchHHHHHHhhcc----------CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHH
Q 041408 332 MIMVESGAVFELIELELTA----------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRA 401 (425)
Q Consensus 332 ~~iv~~G~v~~Lv~lL~~~----------~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a 401 (425)
..++ .+++..|+++|..- .+......++.+|..|.....|...++.+..++..|+..|...++..+..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3444 45567777776421 133556778899999999999999999999999999997777678889999
Q ss_pred HHHHHHHhccCC
Q 041408 402 ILILSLICKFSG 413 (425)
Q Consensus 402 ~~~L~~l~~~~~ 413 (425)
+.+|..+|..+.
T Consensus 183 leLL~~lc~~~~ 194 (383)
T 3eg5_B 183 AKLLSALCILPQ 194 (383)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHHhCcC
Confidence 999999998775
No 183
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=82.86 E-value=2.5 Score=32.25 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHHhhhhccccCCCCCCCcccCcCCccCCCCceecCC-C-----ccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 52 IIILSLLFQMDDHQDIEIPEYFICPISLQIMKDPVTAIT-G-----ITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPV~~~~-g-----~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
-++..+.|.....+-.=.++.+.||||.++=..=|.... + .-|++.++.+...++. .=|.+|.|+..
T Consensus 7 ~kI~~c~F~V~~~~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~---~HPLSREpit~ 79 (102)
T 2kkx_A 7 NKISQCKFSVCPERLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL---PHPLTREPITA 79 (102)
T ss_dssp HHHHHHCEECCTTTTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC---CCTTTCCCCCT
T ss_pred HHHHhcccccChhhccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC---CCCCccCCCCH
Confidence 356667776665555455677899999999888886632 2 3499999999998863 44899999865
No 184
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=82.82 E-value=0.66 Score=35.06 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=39.0
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.-.-+.|--|..-.+ -.+..+.|.+|+.|+..-+... ..||+|+.+|..
T Consensus 25 ~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~S---drCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSVS---NRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSSS---SEETTTTEECCC
T ss_pred ccCcccChhhccccC-CeeeecchhhHHHHHHHHHhhc---cCCcccCCcCCc
Confidence 334578999998886 4455778999999999888763 789999999953
No 185
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=81.13 E-value=37 Score=32.02 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhc--CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEA--GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVE 250 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~--G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~ 250 (425)
+.+.++......+.......+...++. . =|-++..|-.+.... +.--.+=..|.....++.-.+-++.+ +.+.
T Consensus 93 E~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~--diAl~~G~mLRecir~e~la~~iL~~--~~f~ 167 (341)
T 1upk_A 93 EGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESP--EIALNCGIMLRECIRHEPLAKIILWS--EQFY 167 (341)
T ss_dssp HHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGST--TTHHHHHHHHHHHHTSHHHHHHHHHS--GGGG
T ss_pred hhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccc--hhHhHHHHHHHHHHHhHHHHHHHhcc--HHHH
Confidence 566666666666554433333222210 1 133333443443322 11223334555566666655555543 5677
Q ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcc---hhHHHHHHHHhccccCChHHHHHHHHHHHHhCCC
Q 041408 251 SFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLK---PQIFQNIIRVLKQRVIAQQGINAALKLMLDACPS 327 (425)
Q Consensus 251 ~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~---~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~ 327 (425)
.+....+. ++-++-..|..++..|-............ ..++...-+||.++ +.-+++.++..|..|-..
T Consensus 168 ~fF~yv~~------~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~--NYVTkRQSlKLLgelLld 239 (341)
T 1upk_A 168 DFFRYVEM------STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE--NYVTKRQSLKLLGELLLD 239 (341)
T ss_dssp HHHHHTTC------SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC------CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHhC
Confidence 88888887 89999999999999887654432222221 24677788899988 999999999999999998
Q ss_pred CCchHHHHh----hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCH
Q 041408 328 GRNRMIMVE----SGAVFELIELELTASEKKTTELILGILFHLCSCA 370 (425)
Q Consensus 328 ~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~ 370 (425)
..|...|.. ..-+..+..+|.+. +..++-.|..+..-.+.++
T Consensus 240 r~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 240 RHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp GGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 888777754 46677888888876 8888989988887666544
No 186
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=80.60 E-value=17 Score=39.23 Aligned_cols=156 Identities=10% Similarity=0.000 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHH
Q 041408 174 LQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFT 253 (425)
Q Consensus 174 ~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv 253 (425)
.+..++..+..++.+.... ....++.++..|..-.. .++.++..++++++.++..-......+. .+++.++
T Consensus 465 ~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~---~vl~~l~ 535 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMIN---SVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHT---TTHHHHH
T ss_pred HHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHH
Confidence 4555667777776543221 12345555555532221 1234578888888887642111122222 5788888
Q ss_pred HHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--Cch
Q 041408 254 WVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNR 331 (425)
Q Consensus 254 ~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~ 331 (425)
..|.. +.++..|+.+|.+++..-..... -.-..++..|..++..+..+...+..+..++..+.... +..
T Consensus 536 ~~l~~--------~~V~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 536 HALGN--------PELSVSSVSTLKKICRECKYDLP-PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp HHTTC--------GGGHHHHHHHHHHHHHHTGGGCT-TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHhCC--------chHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 77742 67889999999999964322111 11135666777777754225688888899998887533 333
Q ss_pred HHHHhhCchHHHHHHhh
Q 041408 332 MIMVESGAVFELIELEL 348 (425)
Q Consensus 332 ~~iv~~G~v~~Lv~lL~ 348 (425)
...++ ..+++++..+.
T Consensus 607 ~~~~~-~l~~~l~~~l~ 622 (963)
T 2x19_B 607 LKNLH-SLISPYIQQLE 622 (963)
T ss_dssp HHHHH-HHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHH
Confidence 33333 46666666554
No 187
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=80.46 E-value=12 Score=40.57 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHH
Q 041408 219 GGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQ 298 (425)
Q Consensus 219 ~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 298 (425)
..++.|+.+++.++.+-.... . ..++.++.++..-. ....++.++..++++|..++..-....... ..+++
T Consensus 479 ~~~eaal~~l~~iae~~~~~~---~---~~l~~l~~~l~~l~-~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE---K---RQIPRLMRVLAEIP-YEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp HHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSC-TTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh---h---HHHHHHHHHHHhcC-ccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 358889999998876543211 1 23444444442100 001478899999999999986433221111 24677
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHh--hCchHHHHHHhhcc-CCcchHHHHHHHHHHHhCC--HhhH
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVE--SGAVFELIELELTA-SEKKTTELILGILFHLCSC--ADGR 373 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~--~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~~--~e~r 373 (425)
.|+..| + +.++..|+.+|.+|+... +..+.. .+.+..|.+++... .+...++.+..++..++.. .+..
T Consensus 550 ~l~~~l-~----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 550 LLVRGL-N----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHH-H----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHh-C----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 777777 2 468999999999999532 223331 23444555566542 1456778888888888753 2444
Q ss_pred HHHhhccccHHHHHHHH
Q 041408 374 AQFLSHRAAIAVVTKRI 390 (425)
Q Consensus 374 ~~~~~~~g~i~~Lv~ll 390 (425)
...+. ..++++++.+
T Consensus 623 ~~~~~--~ll~~l~~~l 637 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEEL 637 (971)
T ss_dssp HHHHH--HHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHH
Confidence 44333 2344555433
No 188
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.50 E-value=0.39 Score=29.27 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.3
Q ss_pred cccCcCCccCCCCceec
Q 041408 72 YFICPISLQIMKDPVTA 88 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~ 88 (425)
-|.||+|+.-+..|-.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 49999999888777543
No 189
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.28 E-value=36 Score=32.12 Aligned_cols=200 Identities=11% Similarity=0.018 Sum_probs=127.2
Q ss_pred HhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHH----HHhhhhchhchHHHHHHHHccccccccCCHHHHH
Q 041408 196 MAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEY----MKLSAFEIDKIVESFTWVLALDDESIENHKEIKS 271 (425)
Q Consensus 196 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~----~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~ 271 (425)
+...+.+..|+..|..-.- +.+..+..+..++-..... ....+...+.++..|+.-- .+++.--
T Consensus 74 i~~~dll~~Li~~l~~L~f----E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--------e~~diAl 141 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDF----EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--------ESPEIAL 141 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCH----HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--------GSTTTHH
T ss_pred HHHhCHHHHHHHhcccCCc----hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--------ccchhHh
Confidence 3445788888777754332 3366666666665432211 1122222234444443332 3455556
Q ss_pred HHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHhh---CchHHHHHHh
Q 041408 272 HALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVES---GAVFELIELE 347 (425)
Q Consensus 272 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~~---G~v~~Lv~lL 347 (425)
.+-..|+.+...+.-...+.. .+.+..+++.+..+ +.++...|..++..|-. +..-...+... -.+...-.||
T Consensus 142 ~~G~mLRecir~e~la~~iL~-~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll 218 (341)
T 1upk_A 142 NCGIMLRECIRHEPLAKIILW-SEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL 218 (341)
T ss_dssp HHHHHHHHHHTSHHHHHHHHH-SGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHhc-cHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh
Confidence 677778887776655444433 35677888889888 99999999999987754 33333333332 3355566777
Q ss_pred hccCCcchHHHHHHHHHHHhCCHhhHHH---HhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 348 LTASEKKTTELILGILFHLCSCADGRAQ---FLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 348 ~~~~~~~~~e~Al~~L~~L~~~~e~r~~---~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
.++ +-..+..++..|..|...+.+... .+....-+..++.+|...|...|-.|..+.--...+
T Consensus 219 ~S~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 219 HSE-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp TCS-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred cCC-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 775 788899999999999988777654 455566677888877777888888888777555444
No 190
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=77.43 E-value=31 Score=32.10 Aligned_cols=137 Identities=9% Similarity=0.039 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhc--chhHHH
Q 041408 221 LEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRL--KPQIFQ 298 (425)
Q Consensus 221 ~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~--~~g~i~ 298 (425)
.+.|+..|..++.+-....+++......+..|+ +..+ ..+..++.|+++|.....+++.....+. ...++.
T Consensus 45 le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~------~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~ 117 (315)
T 3qml_C 45 LEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN------LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKS 117 (315)
T ss_dssp HHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc------CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHH
Confidence 788999999999887776777763234555555 3333 5677899999999999888876554332 234455
Q ss_pred HHHHHhcc----c-cCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhcc-CCcchHHHHHHHHHHHhC
Q 041408 299 NIIRVLKQ----R-VIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTA-SEKKTTELILGILFHLCS 368 (425)
Q Consensus 299 ~Lv~lL~~----~-~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~e~Al~~L~~L~~ 368 (425)
.+..-|.. + ......++.-+.+|-.|..+... +. ...+..|++++... .+..++.+++.++..+-.
T Consensus 118 ~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 118 KIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---LP-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---hh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 44444433 1 01336677778888888887531 11 23456777777542 167788888888887763
No 191
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.81 E-value=4.4 Score=30.25 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=34.7
Q ss_pred cccCcCCccCCC-----Cceec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMK-----DPVTA--ITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 72 ~~~Cpi~~~~m~-----dPV~~--~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
.-.|.||++-.- +|-+. .|+...||.|.+-=..++ +..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG--~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG--TQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS--CSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc--CccccccCCccc
Confidence 357999986421 23233 588899999988777766 689999999885
No 192
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=73.56 E-value=11 Score=36.56 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=58.7
Q ss_pred hCchHHHHHHhhcc----------CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHH
Q 041408 337 SGAVFELIELELTA----------SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILS 406 (425)
Q Consensus 337 ~G~v~~Lv~lL~~~----------~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~ 406 (425)
.|++..|+++|..- .+......++.+|..|.....|...++.+..++..++..|...++..+..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 35566666666321 02345677889999999999999999999999988888766667788888999999
Q ss_pred HHhccCC
Q 041408 407 LICKFSG 413 (425)
Q Consensus 407 ~l~~~~~ 413 (425)
.+|..++
T Consensus 126 alc~~~~ 132 (386)
T 2bnx_A 126 ALCILPQ 132 (386)
T ss_dssp HHHTCCS
T ss_pred HHHcCCC
Confidence 9998765
No 193
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=72.56 E-value=27 Score=37.66 Aligned_cols=134 Identities=7% Similarity=0.062 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc-cCChHHHHHHHHHHHHhCCCC-CchHHHHhhCchHH
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR-VIAQQGINAALKLMLDACPSG-RNRMIMVESGAVFE 342 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v~~ 342 (425)
.+...++.++.++..++.+-.... ...++.++..|..- ..++.++..++++|..++..- .+. .... .+++.
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~ 533 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPL 533 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHH
Confidence 577888889999998887533211 13445555554221 126789999999999888632 222 2332 67888
Q ss_pred HHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHH----HHHhc--CChHHHHHHHHHHHHHhccCC
Q 041408 343 LIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVT----KRIMQ--VSPAADDRAILILSLICKFSG 413 (425)
Q Consensus 343 Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv----~ll~~--~s~~~~e~a~~~L~~l~~~~~ 413 (425)
|+..|. ++.++..|+.+|.++|. +.+..+. .-++.++ +++.+ .+...+..+..++..++...+
T Consensus 534 l~~~l~---~~~V~~~A~~al~~l~~--~~~~~l~---p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 534 VLHALG---NPELSVSSVSTLKKICR--ECKYDLP---PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHTT---CGGGHHHHHHHHHHHHH--HTGGGCT---TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhC---CchHHHHHHHHHHHHHH--HHHHHHH---hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 888774 47899999999999995 2222222 1234443 33333 245677788888888776543
No 194
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=72.30 E-value=0.98 Score=26.18 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.3
Q ss_pred CCcccCcCCccCCCCc
Q 041408 70 PEYFICPISLQIMKDP 85 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP 85 (425)
|..|.||+|+..|-|+
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4568899999877666
No 195
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.09 E-value=0.18 Score=38.38 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=27.0
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
..||.|++.|. + ..|+.+|..|=..+.. ...||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~----~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM----KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE----EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc----cccCcchhhHHH
Confidence 68999999883 3 2444457766333322 257999999984
No 196
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=71.72 E-value=36 Score=32.56 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=83.8
Q ss_pred HHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcc
Q 041408 275 RILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKK 354 (425)
Q Consensus 275 ~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~ 354 (425)
.-|.+|.-.+++.+.=.+...++..+..++.-. +.++.++....|...+....-...=. ...+|.++..+.-.++++
T Consensus 264 FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp--N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDd 340 (619)
T 3c2g_A 264 FDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP--NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDE 340 (619)
T ss_dssp HHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhcccccccceeecccceeEEEEeecC--CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcc
Confidence 345566666666665444445577777777766 88899999999999887544221111 357899999997766788
Q ss_pred hHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC
Q 041408 355 TTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV 393 (425)
Q Consensus 355 ~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~ 393 (425)
+.=...+-|.|.......-+.+....++|+.|-+.+.+.
T Consensus 341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 888889999999987766665555578899999988776
No 197
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=71.30 E-value=7.2 Score=33.15 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=20.2
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPL 119 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l 119 (425)
+.+..+.||+|+.+..+ .- ...||.|+.|-
T Consensus 134 ~~~~~~~C~~CG~i~~~--------------------~~--p~~CP~Cg~~~ 163 (170)
T 3pwf_A 134 EIKKVYICPICGYTAVD--------------------EA--PEYCPVCGAPK 163 (170)
T ss_dssp CCSCEEECTTTCCEEES--------------------CC--CSBCTTTCCBG
T ss_pred CCCCeeEeCCCCCeeCC--------------------CC--CCCCCCCCCCH
Confidence 44567889888777631 11 35899999764
No 198
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.02 E-value=1.2e+02 Score=32.94 Aligned_cols=230 Identities=12% Similarity=0.058 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHh--cChhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCC
Q 041408 156 PLSKLQIIKLIKDI--WKPELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKI 233 (425)
Q Consensus 156 ~~~~~~i~~lv~~l--~s~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~ 233 (425)
+.+...+..++..+ .+.+.+.+|-..|..+-+ + .++...+..+|.+.. +..++--|+.+|.+...
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~---------p~~~~~l~~iL~~s~---~~~vr~~aa~~Lk~~i~ 78 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-N---------PDAWQKADQILQFST---NPQSKFIALSILDKLIT 78 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-S---------TTGGGGHHHHHHHCS---CHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-C---------chHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHH
Confidence 34556676666665 234556667777765532 2 245555666775532 12346666667766431
Q ss_pred -----ChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc
Q 041408 234 -----TSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV 308 (425)
Q Consensus 234 -----~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 308 (425)
-+++.+..+.. .++..+...-... .....+..++...+.++..++..+-...+ .++++.|+.++. .
T Consensus 79 ~~W~~l~~~~~~~ir~--~ll~~l~~~~~~~-~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~- 149 (1049)
T 3m1i_C 79 RKWKLLPNDHRIGIRN--FVVGMIISMCQDD-EVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-S- 149 (1049)
T ss_dssp HTGGGSCHHHHHHHHH--HHHHHHHHHHHCH-HHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-T-
T ss_pred hhCccCCHHHHHHHHH--HHHHHHHhhCCcc-ccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-c-
Confidence 11222333332 2344333322110 00000356677778888888765422111 468999999996 4
Q ss_pred CChHHHHHHHHHHHHhCC--C---CC----ch-----HHHHh--hCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhh
Q 041408 309 IAQQGINAALKLMLDACP--S---GR----NR-----MIMVE--SGAVFELIELELTASEKKTTELILGILFHLCSCADG 372 (425)
Q Consensus 309 ~~~~~~~~A~~aL~~L~~--~---~~----n~-----~~iv~--~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~ 372 (425)
++..++.++.+|..|+. . .+ .+ ..+.+ ..+++.+...|....+..+...++.++......-..
T Consensus 150 -~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~ 228 (1049)
T 3m1i_C 150 -SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY 228 (1049)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH
Confidence 56677888888887763 1 11 11 22222 122333445554433456788888888877653322
Q ss_pred HHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHhcc
Q 041408 373 RAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 373 r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~~~ 411 (425)
-. +.. ...++.+.+.+. .++..+..|+.+|..+...
T Consensus 229 ~~-~~~-~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 229 RY-IYE-TNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HH-HHS-SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HH-Hhh-hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 11 223 334455443233 2567778888888888765
No 199
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=70.92 E-value=20 Score=32.11 Aligned_cols=139 Identities=12% Similarity=-0.048 Sum_probs=86.5
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHh-ccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVL-KQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~~A~~aL~~L~ 325 (425)
..++..-.+.++ ..-++|--|+.+|..+ . ....+++.+-..+ .+. +-.+++.++.++..++
T Consensus 71 ~~~~la~~L~~~------~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~ 132 (240)
T 3l9t_A 71 YIKKLAFLAYQS------DVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFC 132 (240)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC------cchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHH
Confidence 345555556665 6678898999988766 2 1124566666634 444 7899999999999888
Q ss_pred C-CCCchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcCChHHHHHHHHH
Q 041408 326 P-SGRNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQVSPAADDRAILI 404 (425)
Q Consensus 326 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~ 404 (425)
. .+..+ .++.+...+.+. +..+...|...+.--+..+.- ...-...+|.|-.+....+.=+|......
T Consensus 133 ~~~~pe~-------~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~ 201 (240)
T 3l9t_A 133 KKIEYKK-------ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNA 201 (240)
T ss_dssp HHHCTTT-------THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred HhcCHHH-------HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 5 22221 667788888775 777777776665432221110 00111224444442233356778888899
Q ss_pred HHHHhccCCC
Q 041408 405 LSLICKFSGN 414 (425)
Q Consensus 405 L~~l~~~~~~ 414 (425)
|..+++..++
T Consensus 202 LrD~SK~~Pd 211 (240)
T 3l9t_A 202 LRDISKKFPD 211 (240)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHhhhCHH
Confidence 9999998776
No 200
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=69.75 E-value=20 Score=39.45 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHhhhchhh--hhHHhhcCcHHHHHHHHhhccc-CCCcccHHHHHHHHHhcCCChHHHHhhhhchhchH
Q 041408 173 ELQTKTLIQLEVFAAENERN--RKCMAEAGVPRAMLTYIVNCCD-KNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIV 249 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~--r~~i~~~G~i~~Lv~lL~s~~~-~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i 249 (425)
..+..++++++.++.+-... ...+ ..++|.|+.++.+... +....++..++++|+..+.--..+...+. ..+
T Consensus 468 ~~~EA~~~a~gaIa~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~---~vl 542 (1023)
T 4hat_C 468 HNINTLSWAIGSISGTMSEDTEKRFV--VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR---TVI 542 (1023)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHH--HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH---HHH
Confidence 45677889999988653322 2222 3567777777753211 01012234556777765421111111221 355
Q ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHh---hcchhHHHHHHH----HhccccCChHHHHHHHHHHH
Q 041408 250 ESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQ---RLKPQIFQNIIR----VLKQRVIAQQGINAALKLML 322 (425)
Q Consensus 250 ~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~---~~~~g~i~~Lv~----lL~~~~~~~~~~~~A~~aL~ 322 (425)
..|+..+.. .++.++..|++++.++|..-...... +.....++.++. .+..- ++.....+..++.
T Consensus 543 ~~L~~~l~~------~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l--~~~~~~~lyeai~ 614 (1023)
T 4hat_C 543 LKLFEFMHE------THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL--QPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHTTC------SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS--CHHHHHHHHHHHH
T ss_pred HHHHHHhhc------CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence 556666654 67889999999999999753221110 000113444444 33333 6777888888888
Q ss_pred HhCCCC
Q 041408 323 DACPSG 328 (425)
Q Consensus 323 ~L~~~~ 328 (425)
.+....
T Consensus 615 ~vi~~~ 620 (1023)
T 4hat_C 615 IIISEE 620 (1023)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 887643
No 201
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=67.74 E-value=1e+02 Score=30.65 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHH
Q 041408 173 ELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESF 252 (425)
Q Consensus 173 ~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~L 252 (425)
..+.=|..-+..+-+.-+.... -++..++.+..+.+. .++..|+..|-.++.+ +. +. .++..|
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~----~IR~qaik~Lp~~ck~-~~----i~---kiaDvL 105 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDV----SIRRQAIKELPQFATG-EN----LP---RVADIL 105 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSH----HHHHHHHHHGGGGCCT-TC----HH---HHHHHH
T ss_pred HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccH----HHHHHHHHhhHHHhhh-hh----hh---hHHHHH
Confidence 3444444555444444444322 346666777655543 3478888888888876 21 22 466788
Q ss_pred HHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHH
Q 041408 253 TWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 253 v~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~ 323 (425)
+.+|+. .++......-..|..+...+. .|.+..|..-+..+ +..+|+.++..|..
T Consensus 106 ~QlLqt------dd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~--~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 106 TQLLQT------DDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG--EDIVRERAIKFLST 160 (507)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS--CHHHHHHHHHHHHH
T ss_pred HHHHhc------cchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc--chHHHHHHHHHHHH
Confidence 999987 566555555556655554433 35566677777777 78899999888863
No 202
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=67.34 E-value=33 Score=37.61 Aligned_cols=144 Identities=6% Similarity=0.042 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhcccc---CChHHHHHHHHHHHHhCCCC-CchHHHHhhCch
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRV---IAQQGINAALKLMLDACPSG-RNRMIMVESGAV 340 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~G~v 340 (425)
.++..++.|+.++..++..-.....-..-..+++.|+.+..... ..+..+..+++++..++..- .+. .... .++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHH
Confidence 56788889999999887532211000001234455555432110 02334445777777766421 222 2222 366
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhCCHhhHHHHh-hcc----ccHHHHHHH----HhcCChHHHHHHHHHHHHHhcc
Q 041408 341 FELIELELTASEKKTTELILGILFHLCSCADGRAQFL-SHR----AAIAVVTKR----IMQVSPAADDRAILILSLICKF 411 (425)
Q Consensus 341 ~~Lv~lL~~~~~~~~~e~Al~~L~~L~~~~e~r~~~~-~~~----g~i~~Lv~l----l~~~s~~~~e~a~~~L~~l~~~ 411 (425)
+.|++.|.+. ++.++..|+.++.++|.. .+..+. ... .-++.+++. +...+.........++..+...
T Consensus 543 ~~ll~~l~~~-~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 543 LKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHTTSS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 6777777654 789999999999999973 233332 000 123344432 2233444455555666666555
Q ss_pred CC
Q 041408 412 SG 413 (425)
Q Consensus 412 ~~ 413 (425)
.+
T Consensus 620 ~~ 621 (1049)
T 3m1i_C 620 ER 621 (1049)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 203
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=64.20 E-value=58 Score=35.82 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=84.8
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccc-cccccCCHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALD-DESIENHKEIKSHALRILK 278 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~-~~~~~~~~~~~~~A~~~L~ 278 (425)
..++.+...|.......+......++.+|+|+... ..++.|..++... ....+....++..|+++|.
T Consensus 436 ~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr 503 (1056)
T 1lsh_A 436 ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALR 503 (1056)
T ss_dssp GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh------------hHHHHHHHhhcCccccccccchHHHHHHHHHHH
Confidence 34566666554322221122356677888887542 3555566665310 0000134567888999998
Q ss_pred HHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHhhccCCcchHHH
Q 041408 279 NIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELELTASEKKTTEL 358 (425)
Q Consensus 279 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~ 358 (425)
.++.... .-+-+.|++++.+...++++|-+|...|..-..+. ..+..+...+..+.+..+.-.
T Consensus 504 ~~~~~~p--------~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~---------~~l~~ia~~l~~E~~~QV~sf 566 (1056)
T 1lsh_A 504 NIAKRDP--------RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSV---------ALVSMVAVRLRREPNLQVASF 566 (1056)
T ss_dssp TGGGTCH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH---------HHHHHHHHHHTTCSCHHHHHH
T ss_pred Hhhhhch--------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCH---------HHHHHHHHHHhhCchHHHHHH
Confidence 8874321 12346788888655458899999999887644322 233455556665446677777
Q ss_pred HHHHHHHHhCCHh
Q 041408 359 ILGILFHLCSCAD 371 (425)
Q Consensus 359 Al~~L~~L~~~~e 371 (425)
....|.+++....
T Consensus 567 v~S~l~sla~s~~ 579 (1056)
T 1lsh_A 567 VYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHHhcCC
Confidence 7888888887443
No 204
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=62.41 E-value=1.9 Score=29.95 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCCCCCCC-c-cHHH-HHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 041408 109 NAECPVTKQPLPKDLDLT-P-NHTL-RRLIQAWCADNSAYGIDRIPTPKAPLS 158 (425)
Q Consensus 109 ~~~cP~~~~~l~~~~~l~-p-n~~l-~~~I~~~~~~n~~~~~~~~p~~~~~~~ 158 (425)
++.||.|+..+.. ..+. + .+.. ++.|++|...++- .|..+.++.
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~-----cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGN-----DPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSB-----CTTTCCBCC
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCC-----CcCCcCCCC
Confidence 4789999999875 4333 2 3333 8899999988763 355444444
No 205
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=62.38 E-value=41 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=55.1
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..+.+-|++ +++.++..|+.+|..+..+-..... ...+..++..|++++... ++.+++..+..+...+
T Consensus 42 ~a~rai~Krl~~------~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~--~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNH------KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG--HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC--CHHHHHHHHHHHHHHH
Confidence 467778888887 8899999999988888776554443 333457889999999766 8899999988887655
Q ss_pred C
Q 041408 326 P 326 (425)
Q Consensus 326 ~ 326 (425)
.
T Consensus 114 ~ 114 (140)
T 3ldz_A 114 D 114 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=61.03 E-value=11 Score=38.35 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=75.3
Q ss_pred CcHHHHHHHHhhcccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHH
Q 041408 200 GVPRAMLTYIVNCCDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKN 279 (425)
Q Consensus 200 G~i~~Lv~lL~s~~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~ 279 (425)
++++.++.-|.+.+++ ++..|+.+|.-++ ..+ .+ +.++..+-..|.. .++.+.+. .....+|..
T Consensus 299 ~Vv~aVL~GL~D~DDD----VRAVAAetLiPIA-~p~----~l---~~LL~iLWd~L~~-LDDLSAST---gSVMdLLAk 362 (800)
T 3oc3_A 299 GLCRKLVSLLSSPDED----IKLLSAELLCHFP-ITD----SL---DLVLEKCWKNIES-EELISVSK---TSNLSLLTK 362 (800)
T ss_dssp HHHHHHHHHTTCSSHH----HHHHHHHHHTTSC-CSS----TH---HHHHHHHHHHHHT-CCSCCTTH---HHHHHHHHH
T ss_pred HHHHHHHhhcCCcccH----HHHHHHHHhhhhc-chh----hH---HHHHHHHHHHhhh-hcccchhh---HHHHHHHHH
Confidence 3444444555444433 3666677776666 111 11 1345555555553 22233333 345667777
Q ss_pred HHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHH-HhhccCCcchHHH
Q 041408 280 IIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIE-LELTASEKKTTEL 358 (425)
Q Consensus 280 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~-lL~~~~~~~~~e~ 358 (425)
|+..+.+ .......+|.|...|+.. -+.+|.+++.+|..+. ...+++.+.+ +|-+. +.++.+.
T Consensus 363 L~s~p~~---a~~dp~LVPRL~PFLRHt--ITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~-neeIl~l 426 (800)
T 3oc3_A 363 IYRENPE---LSIPPERLKDIFPCFTSP--VPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEE-KDEIREM 426 (800)
T ss_dssp HHHHCTT---CCCCSGGGGGTGGGGTCS--SHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCS-CHHHHHH
T ss_pred HHcCCcc---cccChHHHHHHHhhhcCC--cHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCC-cHHHHHH
Confidence 7776642 223346788888899887 8899999999998887 1123333333 23333 6777777
Q ss_pred HHHHHH
Q 041408 359 ILGILF 364 (425)
Q Consensus 359 Al~~L~ 364 (425)
+..+..
T Consensus 427 S~~VWk 432 (800)
T 3oc3_A 427 AIKLLK 432 (800)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 207
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=58.59 E-value=5.7 Score=30.46 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=26.4
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN 107 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~ 107 (425)
.+.||+|++.+..+-+.+. ..-|..|+.|...++
T Consensus 63 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLEPV--PELKEQIQAWMREKQ 96 (100)
T ss_dssp CSBCSSSCCBCCTTSSEEC--HHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCChhhceEC--HHHHHHHHHHHHHhh
Confidence 4789999999987755554 345889999998753
No 208
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.47 E-value=3.5 Score=26.87 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=12.1
Q ss_pred CCCCcccCcCCccC
Q 041408 68 EIPEYFICPISLQI 81 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~ 81 (425)
++|+++.||+|+.-
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 68999999999853
No 209
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=54.38 E-value=68 Score=26.69 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=53.5
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|.+-|++ +++.++-.|+.+|..+..+-..... .+.+..++..|++++... .++.+++.++..|..-+
T Consensus 52 eA~ral~krl~~------~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~-~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNH------KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK-AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHH
Confidence 466777778887 8899999999998888876444433 333457899999999753 37889999888876554
No 210
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=51.77 E-value=5.4 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.755 Sum_probs=12.3
Q ss_pred CCCCcccCcCCccC
Q 041408 68 EIPEYFICPISLQI 81 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~ 81 (425)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 68999999999864
No 211
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=51.49 E-value=9.7 Score=30.13 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=37.0
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-|.|..|+..+.+ +.....|..||+.+-.+-+ .+.|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-----CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-----CccCcccCCcCCc
Confidence 566999999998876 4566789999998865543 3689999998864
No 212
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.94 E-value=11 Score=29.84 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=38.0
Q ss_pred CCcccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
|+-|.|..|...|.| +.....|..||+.+..+-+... ..|..|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~---~~C~~C~~~I~~ 81 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS---GAGGSGGHMGSG 81 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC---CSSSCSSCCSCC
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC---CccccCCCCcCc
Confidence 345899999999974 4566789999999988776431 379999988864
No 213
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=50.80 E-value=4.9 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=12.5
Q ss_pred CCCCcccCcCCccC
Q 041408 68 EIPEYFICPISLQI 81 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~ 81 (425)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 79999999999864
No 214
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=50.19 E-value=81 Score=25.78 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=55.5
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccc----cCChHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQR----VIAQQGINAALKLM 321 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~aL 321 (425)
.++..|.+-|++ +++.++..|+.+|..+..+-.... ..+.+..++..|++++... ..++.+++..+..|
T Consensus 38 ~a~rai~krl~~------~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 38 HAPWLLAHKIQS------PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 567778888887 899999999999999888755444 2333458999999999741 12678899888888
Q ss_pred HHhCC
Q 041408 322 LDACP 326 (425)
Q Consensus 322 ~~L~~ 326 (425)
..-+.
T Consensus 112 ~~W~~ 116 (148)
T 1mhq_A 112 FSWTV 116 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 215
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.72 E-value=1.3 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=23.8
Q ss_pred ccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
..||.|.+.|. + ..++.+|..|=..+ .. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~-~---~~~~~~C~~C~~~~-~~---~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALE-R---NGDTAHCETCAKDF-SL---QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCE-E---CSSEEECTTTCCEE-EE---EEECSSSCSCCC
T ss_pred CCCCCCCCccc-c---CCCceECccccccC-CC---cccCcchhhHHH
Confidence 57999998873 2 23344455552211 11 247999998874
No 216
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=48.78 E-value=2.3e+02 Score=31.08 Aligned_cols=122 Identities=11% Similarity=-0.000 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHhhhchhhhhHHhhcCcHHHHHHHHhhc---ccCCCcccHHHHHHHHHhcCCChHHHHhhhhchhch
Q 041408 172 PELQTKTLIQLEVFAAENERNRKCMAEAGVPRAMLTYIVNC---CDKNQVGGLEGALSILHFFKITSEYMKLSAFEIDKI 248 (425)
Q Consensus 172 ~~~~~~Al~~L~~la~~~~~~r~~i~~~G~i~~Lv~lL~s~---~~~~~~~~~~~Al~~L~~L~~~~~~~~~~v~~~~g~ 248 (425)
.+.+.-++++|.++.. + +.++.|.++|... ..+....++..|+.+|..++...+. -+
T Consensus 454 ~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---------~v 513 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---------KV 513 (1056)
T ss_dssp HHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---------HH
T ss_pred hHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---------HH
Confidence 3556667777777742 2 3577777777431 1111123467788888888754321 12
Q ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC
Q 041408 249 VESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG 328 (425)
Q Consensus 249 i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~ 328 (425)
-+.+..+..+. ..++++|..|..+|....- ....+..+...+... .+.++..-....|.+++.+.
T Consensus 514 ~~il~~i~~n~----~e~~EvRiaA~~~Lm~t~P----------~~~~l~~ia~~l~~E-~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 514 QEIVLPIFLNV----AIKSELRIRSCIVFFESKP----------SVALVSMVAVRLRRE-PNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHCT----TSCHHHHHHHHHHHHHTCC----------CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCC----CCChHHHHHHHHHHHHHCc----------CHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHhcC
Confidence 33455566321 3788999999888854221 113455555556543 26667767777777777644
No 217
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=48.03 E-value=9.3 Score=29.10 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.5
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN 107 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~ 107 (425)
...||+|++.+...-+.+. ..-|..|++|...++
T Consensus 57 ~~~cP~~~~~l~~~~L~pn--~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRPN--TELKEKIQRWLAERK 90 (98)
T ss_dssp SCBCTTTCSBCCTTTSEEC--HHHHHHHHHHHHHST
T ss_pred CCCCCCCCCCCChhhceEc--HHHHHHHHHHHHHcc
Confidence 4689999999976644454 345889999998753
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=47.42 E-value=1.1e+02 Score=24.96 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccc----cCChHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQR----VIAQQGINAALKLM 321 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~aL 321 (425)
.++..|.+-|++ .++.++..|+.+|..+..+-..... .+.+..++..|++++... ..++.+++..+..|
T Consensus 48 ~a~ral~krl~~------~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 48 LATRLLAHKIQS------PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 467778888887 8999999999999888876655542 233457899999999641 12678899988888
Q ss_pred HHhCC
Q 041408 322 LDACP 326 (425)
Q Consensus 322 ~~L~~ 326 (425)
..-+.
T Consensus 122 ~~W~~ 126 (149)
T 3g2s_A 122 YSWTV 126 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 219
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.52 E-value=6.3 Score=26.40 Aligned_cols=14 Identities=21% Similarity=0.821 Sum_probs=12.3
Q ss_pred CCCCcccCcCCccC
Q 041408 68 EIPEYFICPISLQI 81 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~ 81 (425)
++|+++.||+|+.-
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 78999999999863
No 220
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=45.93 E-value=7.1 Score=28.74 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=14.6
Q ss_pred CCCCcccCcCCccCCCCce
Q 041408 68 EIPEYFICPISLQIMKDPV 86 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV 86 (425)
++|+++.||+|+.-=.+..
T Consensus 56 dlPddW~CPvCga~K~~F~ 74 (81)
T 2kn9_A 56 DIPDDWSCPDCGAAKSDFE 74 (81)
T ss_dssp TSCTTCCCTTTCCCGGGEE
T ss_pred HCCCCCcCCCCCCCHHHcE
Confidence 6899999999996544433
No 221
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=45.91 E-value=4.7 Score=22.45 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=8.6
Q ss_pred ccCcCCccCC
Q 041408 73 FICPISLQIM 82 (425)
Q Consensus 73 ~~Cpi~~~~m 82 (425)
..||+|++.|
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 4699999988
No 222
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.88 E-value=98 Score=25.95 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=55.0
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccc----cCChHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQR----VIAQQGINAALKLM 321 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~----~~~~~~~~~A~~aL 321 (425)
.++..|.+-|++ +++.++-.|+.+|..|..+-..... .+.+..++..|++++... ..+..+++.++..|
T Consensus 50 ~A~ral~krl~~------~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 50 IAVRLLAHKIQS------PQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 467778888887 8999999999999888876444333 233458999999999631 13578999999888
Q ss_pred HHhCC
Q 041408 322 LDACP 326 (425)
Q Consensus 322 ~~L~~ 326 (425)
..-+.
T Consensus 124 ~~W~~ 128 (171)
T 1juq_A 124 YSWTM 128 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 223
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=45.64 E-value=6.5 Score=26.66 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.7
Q ss_pred CCCCcccCcCCccCC
Q 041408 68 EIPEYFICPISLQIM 82 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m 82 (425)
++|+++.||+|+.-=
T Consensus 32 ~lP~dw~CP~Cga~K 46 (55)
T 2v3b_B 32 DIPADWVCPDCGVGK 46 (55)
T ss_dssp GSCTTCCCTTTCCCG
T ss_pred HCCCCCcCCCCCCCH
Confidence 689999999998643
No 224
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=43.83 E-value=69 Score=25.88 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=42.4
Q ss_pred hHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhh-HHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 041408 340 VFELIELELTASEKKTTELILGILFHLCS-CADG-RAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLIC 409 (425)
Q Consensus 340 v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~-r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l~ 409 (425)
+..|..-|..+ ++.++-.|+.+|..+.. ++.. ...+ .....+..|++++.+.++.+++..+.++..-+
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~ev-as~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEV-CSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHH-SSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHH-hhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34445555544 56667777777777766 2222 2233 33456677777776667788888888886554
No 225
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.06 E-value=13 Score=29.51 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=38.0
Q ss_pred CCcccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
|+-|.|..|...|.+ +.....|..||+.+-.+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC---CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC---ccChhhcCCccCc
Confidence 567999999999953 567789999999998776532 1279999988753
No 226
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=43.05 E-value=28 Score=30.30 Aligned_cols=13 Identities=31% Similarity=0.720 Sum_probs=9.7
Q ss_pred CCcccCcCCccCC
Q 041408 70 PEYFICPISLQIM 82 (425)
Q Consensus 70 p~~~~Cpi~~~~m 82 (425)
...+.|++|+.+.
T Consensus 169 ~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 169 DKFHLCPICGYIH 181 (202)
T ss_dssp CCEEECSSSCCEE
T ss_pred CcEEEECCCCCEE
Confidence 4568898888775
No 227
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=42.66 E-value=1.8e+02 Score=26.90 Aligned_cols=135 Identities=8% Similarity=0.025 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCC-CCCchHHHHh--hCchHHHHH
Q 041408 269 IKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACP-SGRNRMIMVE--SGAVFELIE 345 (425)
Q Consensus 269 ~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~iv~--~G~v~~Lv~ 345 (425)
....|...|..++-.=..-..+... . ...|-.++......+..++.|+++|..--+ ++.....+.+ ...|..+..
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~-e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITH-E-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHH-H-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhC-c-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3445555555555432222233321 1 233333332221256788888888876555 4554444444 244444444
Q ss_pred Hhhc----c--CCcchHHHHHHHHHHHhCCHhhHHHHhhccccHHHHHHHHhcC--ChHHHHHHHHHHHHHhc
Q 041408 346 LELT----A--SEKKTTELILGILFHLCSCADGRAQFLSHRAAIAVVTKRIMQV--SPAADDRAILILSLICK 410 (425)
Q Consensus 346 lL~~----~--~~~~~~e~Al~~L~~L~~~~e~r~~~~~~~g~i~~Lv~ll~~~--s~~~~e~a~~~L~~l~~ 410 (425)
-|.. . ....++.+-+++|..|...+. .+ . ..|+..|.+++-.. ...+|..++.++..+-.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-P-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-h-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 3332 1 134567778999999988762 22 1 34677888877666 67888888888877763
No 228
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=42.01 E-value=7.9 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCCCcccCcCCccCCCCce
Q 041408 68 EIPEYFICPISLQIMKDPV 86 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV 86 (425)
++|+++.||+|+.-=.+..
T Consensus 36 ~lPddw~CP~Cga~K~~F~ 54 (70)
T 1dx8_A 36 DLSDSFMCPACRSPKNQFK 54 (70)
T ss_dssp GSCTTCBCTTTCCBGGGEE
T ss_pred hCCCCCcCCCCCCCHHHce
Confidence 6899999999986544433
No 229
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.31 E-value=1.1e+02 Score=26.94 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=55.0
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhH-hhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFL-QRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|.+-|++ .++.++..|+.+|..+..+-..... .+.+..++..|++++... .++.+++.++..|...+
T Consensus 45 ~a~ral~krl~~------~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVND------KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ-VEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence 567778888887 8999999999999888876554432 233457888899998654 36789999988887665
Q ss_pred C
Q 041408 326 P 326 (425)
Q Consensus 326 ~ 326 (425)
.
T Consensus 118 ~ 118 (226)
T 3zyq_A 118 H 118 (226)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=39.25 E-value=12 Score=32.28 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=8.3
Q ss_pred cccCcCCccCC
Q 041408 72 YFICPISLQIM 82 (425)
Q Consensus 72 ~~~Cpi~~~~m 82 (425)
.+.|++|+.++
T Consensus 155 ~~~C~~CG~~~ 165 (191)
T 1lko_A 155 KWRCRNCGYVH 165 (191)
T ss_dssp EEEETTTCCEE
T ss_pred eEEECCCCCEe
Confidence 57888887665
No 231
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.83 E-value=1.2e+02 Score=26.33 Aligned_cols=72 Identities=8% Similarity=0.072 Sum_probs=53.2
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchh-HhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhC
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKF-LQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDAC 325 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~ 325 (425)
.++..|.+-|++ +++.++..|+.+|..+..+-.... ..+.+..++..|++++.+. .+..+++.++..+..-.
T Consensus 42 ~a~r~l~krl~~------~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNS------PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-PHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 466777778887 899999999999988887654433 2233457899999998764 36788888887776544
No 232
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=38.82 E-value=9.8 Score=28.39 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.2
Q ss_pred CCCCcccCcCCccCCC
Q 041408 68 EIPEYFICPISLQIMK 83 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~ 83 (425)
++|+++.||+|+.-=.
T Consensus 64 dlPddW~CPvCga~K~ 79 (87)
T 1s24_A 64 DIPDDWCCPDCGATKE 79 (87)
T ss_dssp GCCTTCCCSSSCCCGG
T ss_pred HCCCCCCCCCCCCCHH
Confidence 7899999999986433
No 233
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=37.96 E-value=46 Score=27.77 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=53.2
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCC--CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSG--RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|.+-|..+ ++.++-.|+..|-.+..+. .-...+.....+..|+.++....++.+++.++..+..-+.
T Consensus 52 eA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3566777778777 8888888888888887753 2455556677888888888754467899998888776654
No 234
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=37.58 E-value=22 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=24.2
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQG 106 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~ 106 (425)
...||+|+..+...-+.+. + .-+..|++|..++
T Consensus 43 ~~~CP~C~~~~~~~~l~~n-~-~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 43 HKTCPKSQETLLHAGLTPN-Y-VLKSLIALWCESN 75 (78)
T ss_dssp CCBCTTTCCBCSSCCCEEC-T-TTHHHHHHHHHHS
T ss_pred cCCCCCCcCCCChhhCccC-H-HHHHHHHHHHHHc
Confidence 5789999999876544443 3 3477999999875
No 235
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.14 E-value=73 Score=20.16 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCcccCcCCccCCCCceecCCCccccHHHHHHHHH-c-CC-CCCCCCCCCCCCC
Q 041408 69 IPEYFICPISLQIMKDPVTAITGITYDRESIEHWLF-Q-GN-NNAECPVTKQPLP 120 (425)
Q Consensus 69 ~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~-~-~~-~~~~cP~~~~~l~ 120 (425)
....|.|++|...|.. +..+..+.. . .+ ..+.|+.|+..+.
T Consensus 9 ~~k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 9 VGKPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SSCCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3455889998777643 345556653 1 11 2478999998774
No 236
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.08 E-value=28 Score=29.44 Aligned_cols=47 Identities=9% Similarity=0.218 Sum_probs=34.6
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-|.|..|...|.+.-....|..||+.+-.+-+ .+.|..|++++..
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-----GTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-----SCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc-----ccccccCCCccCC
Confidence 4568999999888765445688999987754432 2689999988754
No 237
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.76 E-value=14 Score=27.23 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.5
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQG 106 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~ 106 (425)
...||+|++.+...-+.+. + .-|..|++|...+
T Consensus 48 ~~~cP~~~~~l~~~~l~pn-~-~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 48 SPTDPFNRQMLTESMLEPV-P-ELKEQIQAWMREK 80 (85)
T ss_dssp CSBCTTTCCBCCGGGCEEC-H-HHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCChHhcchH-H-HHHHHHHHHHHHh
Confidence 3689999999976644454 3 4488999998764
No 238
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=36.43 E-value=1.5e+02 Score=24.82 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=49.3
Q ss_pred chHHHHHHhhccCCcchHHHHHHHHHHHhC-CHh-hHHHHhhccccHHHHHHHHhc------CChHHHHHHHHHHHHHhc
Q 041408 339 AVFELIELELTASEKKTTELILGILFHLCS-CAD-GRAQFLSHRAAIAVVTKRIMQ------VSPAADDRAILILSLICK 410 (425)
Q Consensus 339 ~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e-~r~~~~~~~g~i~~Lv~ll~~------~s~~~~e~a~~~L~~l~~ 410 (425)
++..|..-|.+. ++.++-.|+.+|..+.. ++. -+.++ .....+..|++++.. ....+++.++.++..-+.
T Consensus 51 A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~ev-as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEV-GKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHH-TSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHH-hhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345566667665 78888899999988887 344 33344 446678888886642 246888999988866554
Q ss_pred cCC
Q 041408 411 FSG 413 (425)
Q Consensus 411 ~~~ 413 (425)
.-+
T Consensus 129 ~f~ 131 (171)
T 1juq_A 129 ALP 131 (171)
T ss_dssp HCT
T ss_pred HcC
Confidence 333
No 239
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.09 E-value=40 Score=29.76 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=55.2
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|.+-|.++ ++.++-.|+.+|-.+..+.. -...+.....+..|+.++....+..+++.++..+...+.
T Consensus 45 ~a~ral~krl~~~--n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDK--NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4567778888877 99999999998888887543 455566667777888888765577899999998887764
No 240
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=36.03 E-value=40 Score=28.07 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=36.6
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-|.|..|...|.+--....|..||+.+-.+-+. ..|..|+.++..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----TKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS-----CBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc-----ccccccccccCC
Confidence 56699999999987755567899999988766542 578888887754
No 241
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.97 E-value=1.5e+02 Score=24.10 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=49.2
Q ss_pred chHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhh-HHHHhhccccHHHHHHHHhc------CChHHHHHHHHHHHHHhc
Q 041408 339 AVFELIELELTASEKKTTELILGILFHLCS-CADG-RAQFLSHRAAIAVVTKRIMQ------VSPAADDRAILILSLICK 410 (425)
Q Consensus 339 ~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~-r~~~~~~~g~i~~Lv~ll~~------~s~~~~e~a~~~L~~l~~ 410 (425)
++..|..-|.+. ++.++-.|+.+|..+.. ++.. +.++ .....+..|++++.. .+..+++..+.++..-+.
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~ei-as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEV-GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHH-TSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHH-hhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 445666666654 78888888888888876 3332 3444 445678888887752 356889999988866654
Q ss_pred cCC
Q 041408 411 FSG 413 (425)
Q Consensus 411 ~~~ 413 (425)
.-+
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 333
No 242
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=34.08 E-value=1.5e+02 Score=32.15 Aligned_cols=99 Identities=17% Similarity=0.023 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCc-hHHH-HhhC----chHHHHHHhhc----cCCcchHHHHHHHHHHHhCCHhhHHHHhhc
Q 041408 310 AQQGINAALKLMLDACPSGRN-RMIM-VESG----AVFELIELELT----ASEKKTTELILGILFHLCSCADGRAQFLSH 379 (425)
Q Consensus 310 ~~~~~~~A~~aL~~L~~~~~n-~~~i-v~~G----~v~~Lv~lL~~----~~~~~~~e~Al~~L~~L~~~~e~r~~~~~~ 379 (425)
+-+..|+|+.+|++++..-.+ .... -+.. .++.|+.++.+ .+++.++-.++.++.+.+..-.. +
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence 567899999999999875332 1110 0112 33444555442 23677888888999888874432 3
Q ss_pred cccHHHHHHHHhc--C----ChHHHHHHHHHHHHHhccCCC
Q 041408 380 RAAIAVVTKRIMQ--V----SPAADDRAILILSLICKFSGN 414 (425)
Q Consensus 380 ~g~i~~Lv~ll~~--~----s~~~~e~a~~~L~~l~~~~~~ 414 (425)
...++.++..+.. + +..++..|..++..+|+..+.
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 4567788887777 4 357899999999999987654
No 243
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=33.50 E-value=4.7 Score=36.43 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=7.0
Q ss_pred HHHHHHHHHcCC
Q 041408 132 RRLIQAWCADNS 143 (425)
Q Consensus 132 ~~~I~~~~~~n~ 143 (425)
.+.|..|+..+.
T Consensus 41 ~~ri~~~~~~~p 52 (244)
T 1lrv_A 41 GRQIDRFFRNNP 52 (244)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHcCCH
Confidence 556666665554
No 244
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=33.44 E-value=16 Score=23.60 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=23.9
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
.|.|++|+..|.....+. .-+..+.... .+.||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~-------~H~~~h~~~~--~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-------IHLRTHTGEK--PYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-------HHHHHHHCCC--CEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH-------HHHHHcCCCC--CcCCCCCcchhCC
Confidence 478999988886653221 1222222222 4689999877643
No 245
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.04 E-value=9.3 Score=32.80 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=37.9
Q ss_pred CCcccCcCCccCCCC---ceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD---PVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d---PV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-|.|..|...|.+ +.....|..||+.+-.+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~---~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC---CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc---CCccccCCCcccc
Confidence 566999999999975 667789999999987766532 1269999988753
No 246
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=32.99 E-value=2.6e+02 Score=24.81 Aligned_cols=126 Identities=11% Similarity=0.001 Sum_probs=79.3
Q ss_pred cHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccccCCHHHHHHHHHHHHHHHh-cccchhHhhcchhHHH
Q 041408 220 GLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESIENHKEIKSHALRILKNIIQ-AASSKFLQRLKPQIFQ 298 (425)
Q Consensus 220 ~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~~~~~~g~i~ 298 (425)
++-.|+.+|+.+ .. . ...++.+...+.. ..+..++..++.++..++. .+.. ..++
T Consensus 87 VR~~Av~lLg~~-~~-------~---~~~L~~ir~~va~-----D~~WrVre~lA~a~~~~~~~~~pe--------~~l~ 142 (240)
T 3l9t_A 87 VRMYAVFLFGYL-SK-------D---KEILIFMRDEVSK-----DNNWRVQEVLAKAFDEFCKKIEYK--------KALP 142 (240)
T ss_dssp HHHHHHHHHHHT-TT-------S---HHHHHHHHHTGGG-----CSCHHHHHHHHHHHHHHHHHHCTT--------TTHH
T ss_pred HHHHHHHHHHhc-cC-------c---HHHHHHHHHHhCC-----CCCccHHHHHHHHHHHHHHhcCHH--------HHHH
Confidence 477788877766 21 1 1466666653443 3889999999999999885 3332 1467
Q ss_pred HHHHHhccccCChHHHHHHHHHHHHhCCCC---CchHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC-CHhhHH
Q 041408 299 NIIRVLKQRVIAQQGINAALKLMLDACPSG---RNRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS-CADGRA 374 (425)
Q Consensus 299 ~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e~r~ 374 (425)
.+.....+. ++.+|+.|...+.--+... .+... ++|.|-.+..+ ++.-++......|..++. +++--.
T Consensus 143 ~~~~W~~d~--n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D-~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 143 IIDEWLKSS--NLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKED-VSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp HHHHHHHCS--SHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTC-SCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 778888888 9999999998875433211 12111 23334344333 366677788888998887 554434
Q ss_pred HHh
Q 041408 375 QFL 377 (425)
Q Consensus 375 ~~~ 377 (425)
.++
T Consensus 215 ~~~ 217 (240)
T 3l9t_A 215 IEL 217 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 247
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=32.60 E-value=2.8e+02 Score=30.47 Aligned_cols=101 Identities=8% Similarity=0.050 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccch-hHhhcchhHHHHHHHHhcccc-CChHH--HHHHHHHHHHhCCCCCchHHHHhhCch
Q 041408 265 NHKEIKSHALRILKNIIQAASSK-FLQRLKPQIFQNIIRVLKQRV-IAQQG--INAALKLMLDACPSGRNRMIMVESGAV 340 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~-~~~~~--~~~A~~aL~~L~~~~~n~~~iv~~G~v 340 (425)
.++...+.+++++..++..-... ..... ..+|+.|+.+..... .+.++ +....+++...+..-.....+.+ -++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHH
Confidence 45788889999999997432211 11111 246677777765430 01122 11222455444432222223332 245
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 341 FELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 341 ~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
..|++.+.+. ++.+++.|+.++..+|.
T Consensus 569 ~~L~~~m~~~-~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 569 NKLFEFMHET-HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHTTCC-STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 5556666554 78999999999999986
No 248
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.66 E-value=1.3e+02 Score=27.11 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=65.3
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHh--
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDA-- 324 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L-- 324 (425)
.+++.++.+-.. .+.++|+-.+..|...+..... ....+++.|..+|.+. ++.+.+.+..+..++
T Consensus 53 ~~l~~il~~~~~------~~~~vrk~~~~Fi~e~~~~k~~-----l~~~~l~~L~~Ll~d~--d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 53 EFLESVLSLAHD------SNMEVRKQVVAFVEQVCKVKVE-----LLPHVINVVSMLLRDN--SAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHGGGGC------SCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC------ChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 466666665433 7788999999999888854331 1235788999999877 888888776654433
Q ss_pred ------CCCCCc---hHHHHh--hCchHHHHHHhhccCCcchHHHHHHHHHHHh
Q 041408 325 ------CPSGRN---RMIMVE--SGAVFELIELELTASEKKTTELILGILFHLC 367 (425)
Q Consensus 325 ------~~~~~n---~~~iv~--~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~ 367 (425)
+.++.. ....=+ ...-..++.++.++ +..++-.++.-+..+.
T Consensus 120 ~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 120 NGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence 443321 011100 12223445555554 6777777777777654
No 249
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.28 E-value=27 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCcccCcCCccCCCCce--ecC--CCccccHHHHHHHHHcCC--CCCCCCC
Q 041408 70 PEYFICPISLQIMKDPV--TAI--TGITYDRESIEHWLFQGN--NNAECPV 114 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV--~~~--~g~t~~r~~I~~~~~~~~--~~~~cP~ 114 (425)
-..++|-+|++-+.|-= .-| .+|.||--|-.++++..+ +...||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 44589999999998864 444 579999999888887522 2345665
No 250
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.75 E-value=1.4e+02 Score=24.32 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=47.1
Q ss_pred chHHHHHHhhccCCcchHHHHHHHHHHHhC-CHh-hHHHHhhccccHHHHHHHHhc------CChHHHHHHHHHHHHHhc
Q 041408 339 AVFELIELELTASEKKTTELILGILFHLCS-CAD-GRAQFLSHRAAIAVVTKRIMQ------VSPAADDRAILILSLICK 410 (425)
Q Consensus 339 ~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~-~~e-~r~~~~~~~g~i~~Lv~ll~~------~s~~~~e~a~~~L~~l~~ 410 (425)
++..|..-|.+. ++.++-.|+.+|..+.. ++. -+.++ .....+..|++++.. ....+++..+.++..-+.
T Consensus 39 a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~ev-as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEV-AKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHH-TSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHH-hhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345555666654 78888889998888877 333 33444 445667778886543 256888888888866554
Q ss_pred c
Q 041408 411 F 411 (425)
Q Consensus 411 ~ 411 (425)
.
T Consensus 117 ~ 117 (148)
T 1mhq_A 117 W 117 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 251
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.39 E-value=36 Score=23.90 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=33.6
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccH-HHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDR-ESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r-~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
++-|.|..|...+.+ +.....|..||+ .+..+-+ .+.|..|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-----~~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-----GPKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-----SCCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh-----CccCCCcCCcee
Confidence 556999999999876 556678999998 5865443 256888875543
No 252
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.26 E-value=2.3e+02 Score=25.43 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCCchHHHHhhCchHHHHHHh
Q 041408 268 EIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGRNRMIMVESGAVFELIELE 347 (425)
Q Consensus 268 ~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~n~~~iv~~G~v~~Lv~lL 347 (425)
+.+-....-+..++...+.. .-..+++.++.+..+. +.++|+-.+..|...+.... -.-..+++.|..+|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~--~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDS--NMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCS--CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44555555555554443321 1246777777776565 78888888888887773221 11234667777777
Q ss_pred hccCCcchHHHHHHHHHH--------HhCCHh------hHHHHhhccccHHHHHHHHhcCChHHHHHHHHHHHHH
Q 041408 348 LTASEKKTTELILGILFH--------LCSCAD------GRAQFLSHRAAIAVVTKRIMQVSPAADDRAILILSLI 408 (425)
Q Consensus 348 ~~~~~~~~~e~Al~~L~~--------L~~~~e------~r~~~~~~~g~i~~Lv~ll~~~s~~~~e~a~~~L~~l 408 (425)
.+. ++.+...+..+..+ +|.++. ..+..+. ..-..+++++.+++..++-.|++.+..+
T Consensus 100 ~d~-d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 100 RDN-SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TCS-CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 764 66666665544333 333321 2222222 1223444544455666666777666543
No 253
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.95 E-value=61 Score=28.36 Aligned_cols=72 Identities=6% Similarity=0.021 Sum_probs=53.5
Q ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHhCCCCC--chHHHHhhCchHHHHHHhhccCCcchHHHHHHHHHHHhC
Q 041408 295 QIFQNIIRVLKQRVIAQQGINAALKLMLDACPSGR--NRMIMVESGAVFELIELELTASEKKTTELILGILFHLCS 368 (425)
Q Consensus 295 g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~e~Al~~L~~L~~ 368 (425)
.++..|.+-|..+ ++.++-.|+.+|-.+..+.. -...+.....+..|+.++.+..+..+++.++..+..-..
T Consensus 42 ~a~r~l~krl~~~--n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSP--NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3566777777777 88999999988888887542 445566667888888888765567888888888776654
No 254
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=28.90 E-value=19 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=25.0
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
..|.|++|+..|..+-.+. .-+..+... ..+.|+.|+..+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~-------~H~~~Ht~e--kp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLS-------RHRRAHLGY--RPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHH-------HHHHHHHTC--CCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHH-------HHHHHhCCC--cCeECCCCCCCcCC
Confidence 3488998888886553222 112222222 25789999988754
No 255
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.77 E-value=2e+02 Score=27.62 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=36.4
Q ss_pred chHHHHHHHHccccccccCCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccccCChHHHHHHHHHHHH
Q 041408 247 KIVESFTWVLALDDESIENHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQRVIAQQGINAALKLMLD 323 (425)
Q Consensus 247 g~i~~Lv~lL~~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~~A~~aL~~ 323 (425)
.+++.++.+-.. .+.++|.-.+..|...+..+... . ..+++.|..+|.+. ++.+.+.+..+..+
T Consensus 63 ~fl~~il~f~~d------~~~~vRk~~a~FieEa~~~~~el---~--~~~l~~L~~LL~d~--d~~V~K~~I~~~ts 126 (386)
T 3o2t_A 63 NFLDEIIAFQAD------KSIEVRKFVIGFIEEACKRDIEL---L--LKLIANLNMLLRDE--NVNVVKKAILTMTQ 126 (386)
T ss_dssp GGHHHHHGGGGC------SCHHHHHHHHHHHHHHHHHCGGG---H--HHHHHHHHHHHTCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC------CcHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 466666655544 56677777777776666532211 1 24566777777665 66666655544433
No 256
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.74 E-value=20 Score=26.86 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCcccCcCCccCCCCc-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDP-VTAITGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP-V~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
++-|.|..|...|.+. .....|..||+.+..+ .. .+.|..|++++.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~--~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---ED--SPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CC--CCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hc--CCccccCCCcccc
Confidence 4569999999988764 3557899999987532 22 3689999988863
No 257
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.48 E-value=25 Score=26.73 Aligned_cols=13 Identities=15% Similarity=0.600 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHc
Q 041408 93 TYDRESIEHWLFQ 105 (425)
Q Consensus 93 t~~r~~I~~~~~~ 105 (425)
-|||.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999975
No 258
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.00 E-value=49 Score=22.69 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCcccCcCCccCCCCce-ecCCCccccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMKDPV-TAITGITYDRESIEHWLF 104 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV-~~~~g~t~~r~~I~~~~~ 104 (425)
|+-|.|..|...|.+-- ....|..||+.|..+-+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 44577777777776532 335677777777665554
No 259
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=26.90 E-value=1.6e+02 Score=31.95 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHh-----hcchhHHHHHHHHhccc---cCChHHHHHHHHHHHHhCCCCCchHHHHh
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQ-----RLKPQIFQNIIRVLKQR---VIAQQGINAALKLMLDACPSGRNRMIMVE 336 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~-----~~~~g~i~~Lv~lL~~~---~~~~~~~~~A~~aL~~L~~~~~n~~~iv~ 336 (425)
.++..++.|+.+|..++.+-.+.... ..-..+++.|+.++.++ ...+.++..+.+++...+..-.. .
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~ 529 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----E 529 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----C
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----C
Confidence 34667788888888887753321110 01124677777777622 12688999999999988874322 2
Q ss_pred hCchHHHHHHhhc--c---CCcchHHHHHHHHHHHhC
Q 041408 337 SGAVFELIELELT--A---SEKKTTELILGILFHLCS 368 (425)
Q Consensus 337 ~G~v~~Lv~lL~~--~---~~~~~~e~Al~~L~~L~~ 368 (425)
...+|+++..+.+ + ++..++..|+.++.++|.
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 3567888877766 2 356799999999999997
No 260
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=26.79 E-value=26 Score=26.57 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHc
Q 041408 94 YDRESIEHWLFQ 105 (425)
Q Consensus 94 ~~r~~I~~~~~~ 105 (425)
|||.|+.+|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 261
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.31 E-value=1e+02 Score=18.32 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=10.2
Q ss_pred CcccCcCCccCCCC
Q 041408 71 EYFICPISLQIMKD 84 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d 84 (425)
..|.|++|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 11 KLYNCKECGKSFSR 24 (46)
T ss_dssp CCCCBTTTTBCCSC
T ss_pred CCeECCCCCCccCc
Confidence 44889888877754
No 262
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.22 E-value=85 Score=19.12 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCCCcccCcCCccCCCCceecCCCccccHHHHHHHHHcCC--CCCCCCCCCC
Q 041408 68 EIPEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN--NNAECPVTKQ 117 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~ 117 (425)
.-...|.|++|...|... ..+..+..... ..+.|+.|+.
T Consensus 8 ~~~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 8 RTRKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCCcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCCC
Confidence 344568899887777543 33444443211 2468998863
No 263
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.02 E-value=30 Score=20.95 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=20.1
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHc--CCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ--GNNNAECPVTK 116 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~--~~~~~~cP~~~ 116 (425)
..|.|++|...|..+ ..+..+... +...+.||.|+
T Consensus 9 k~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK-----------DRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCH-----------HHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCH-----------HHHHHHHHHccCCCCCCCcCCC
Confidence 347888887776543 333343331 21257899885
No 264
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.97 E-value=45 Score=21.52 Aligned_cols=39 Identities=10% Similarity=0.357 Sum_probs=24.0
Q ss_pred cccCcCCccCCCCceecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIMKDPVTAITGITYDRESIEHWLFQGN--NNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~--~~~~cP~~~~~l~~ 121 (425)
.|.|++|...|..+ ..+..+..... ..+.||.|+..+..
T Consensus 2 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQ-----------EHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCH-----------HHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCH-----------HHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 47899888877544 33444443211 24679999877743
No 265
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.42 E-value=56 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.527 Sum_probs=12.1
Q ss_pred cCcCCccCCCCceecCCCccccHH
Q 041408 74 ICPISLQIMKDPVTAITGITYDRE 97 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~~g~t~~r~ 97 (425)
.|+-|.+...+.++..-|..|-+.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~ 50 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPE 50 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTT
T ss_pred CCccCCCEecceEEEECCcccccc
Confidence 455555555555544455555443
No 266
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.25 E-value=34 Score=23.98 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=23.0
Q ss_pred CCcccCcCCccCCC--CceecCCCccccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMK--DPVTAITGITYDRESIEHWLF 104 (425)
Q Consensus 70 p~~~~Cpi~~~~m~--dPV~~~~g~t~~r~~I~~~~~ 104 (425)
|+-|.|..|...|. ++.....|..||+.|-.+...
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 45578888887775 344556677777777655443
No 267
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.11 E-value=28 Score=29.73 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=24.2
Q ss_pred cCcCCccCCCCceecCCCccccHHHHHHHHHcCC
Q 041408 74 ICPISLQIMKDPVTAITGITYDRESIEHWLFQGN 107 (425)
Q Consensus 74 ~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~~ 107 (425)
.||+|++.+...-+.|. ..-|..|+.|...++
T Consensus 143 tcP~t~~~l~~~~L~pN--~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 143 FDPVTRSPLTQDQLIPN--LAMKEVIDAFIQENG 174 (179)
T ss_dssp BCTTTCCBCCGGGCEEC--HHHHHHHHHHHHHCT
T ss_pred CCCCCcCCCChhhCcch--HHHHHHHHHHHHHCC
Confidence 69999999976544454 346889999998753
No 268
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.04 E-value=1e+02 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=10.3
Q ss_pred CcccCcCCccCCCC
Q 041408 71 EYFICPISLQIMKD 84 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d 84 (425)
..|.|++|+..|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 11 KPFKCDICGKSFCG 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCcCCchhCC
Confidence 34889888877754
No 269
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.02 E-value=34 Score=25.00 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHcC--CCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQG--NNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~~--~~~~~cP~~~~~l~~ 121 (425)
.+.+.||+|+..|... ..+..+...- ...+.|+.|+..|..
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 4458899998887543 4555555431 124689999988754
No 270
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.98 E-value=58 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHHHH
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEHWL 103 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~~~ 103 (425)
++-|.|..|...+.+ +.....|..||+.+..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 455888888877754 3345677888887765443
No 271
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.71 E-value=96 Score=18.47 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=10.7
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|+..|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2ytn_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSCBCTTTCCBCSSH
T ss_pred cCeECCCCCCeeCCH
Confidence 458899888777553
No 272
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.55 E-value=1.1e+02 Score=18.18 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=10.6
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|+..|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytr_A 11 KPYKCNECGKAFSQT 25 (46)
T ss_dssp CTTCCTTTCCCCSSH
T ss_pred cCcCCCCCCCccCCH
Confidence 448898888777543
No 273
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.53 E-value=1e+02 Score=21.00 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=25.6
Q ss_pred CCcccCcCCccCCCCc-eecCCCccccHHHHHHHHHc
Q 041408 70 PEYFICPISLQIMKDP-VTAITGITYDRESIEHWLFQ 105 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP-V~~~~g~t~~r~~I~~~~~~ 105 (425)
++-|.|..|...|.+- .....|..||+.+..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 3458888888877543 45567888888888777654
No 274
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.18 E-value=65 Score=19.43 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=11.2
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 11 KPYKCMECGKAFGDN 25 (46)
T ss_dssp CSSSBTTTTBCCSSH
T ss_pred CCcCCCCCCchhCCH
Confidence 458899988888654
No 275
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.16 E-value=1.1e+02 Score=18.16 Aligned_cols=15 Identities=7% Similarity=-0.111 Sum_probs=10.7
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|+..|..+
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2eop_A 11 KPHECRECGKSFSFN 25 (46)
T ss_dssp CSCBCTTTCCBCSSH
T ss_pred CCeeCCCCCchhCCH
Confidence 458898888777553
No 276
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.14 E-value=64 Score=19.42 Aligned_cols=17 Identities=6% Similarity=0.129 Sum_probs=12.2
Q ss_pred CCcccCcCCccCCCCce
Q 041408 70 PEYFICPISLQIMKDPV 86 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV 86 (425)
...|.|++|...|..+-
T Consensus 10 ~k~~~C~~C~k~f~~~~ 26 (46)
T 2ytt_A 10 EKPYQCSECGKSFSGSY 26 (46)
T ss_dssp CCTTCCSSSCCCCSSHH
T ss_pred CCCeeCCCCCcccCCHH
Confidence 34588999888886553
No 277
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.03 E-value=39 Score=24.91 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCcccCcCCccCCC-CceecCCCccccHHHHHHHHH-cCCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMK-DPVTAITGITYDRESIEHWLF-QGNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~-dPV~~~~g~t~~r~~I~~~~~-~~~~~~~cP~~~~~l~~ 121 (425)
...|.|++|...|. ....+. .-+..+-. .. .+.|+.|+..|..
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~-------~H~~~h~~~~~--~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLK-------KHMEVCQKLQD--ALKCQHCRKQFKS 66 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHH-------HHHHHHHHHHH--HHSCSSSCCCCSC
T ss_pred CCCcCCCCCCCChhhhHHHHH-------HHHHHHcCCCC--CEECCCCCCccCC
Confidence 34589999999886 543322 12222222 21 3789999987754
No 278
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.80 E-value=41 Score=22.24 Aligned_cols=40 Identities=8% Similarity=0.250 Sum_probs=24.6
Q ss_pred CcccCcCCccCCCCceecCCCccccHHHHHHHHHc----CCCCCCCCCCCCCCCC
Q 041408 71 EYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ----GNNNAECPVTKQPLPK 121 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~----~~~~~~cP~~~~~l~~ 121 (425)
..|.|++|+..|..+ ..+..+... +...+.||.|+..+..
T Consensus 9 k~~~C~~C~k~f~~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 9 HTYRCKVCSRVYTHI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp TEEECTTTCCEESSH-----------HHHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred cceECCCCcchhCCH-----------HHHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 458899887777543 344444432 1124679999887753
No 279
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.6e+02 Score=26.35 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHhccc-chhHhhcchhHHHHHHHHhccc------cCChHHHHHHHHHHHHhCCC-CCchHHHHh
Q 041408 265 NHKEIKSHALRILKNIIQAAS-SKFLQRLKPQIFQNIIRVLKQR------VIAQQGINAALKLMLDACPS-GRNRMIMVE 336 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~Lv~lL~~~------~~~~~~~~~A~~aL~~L~~~-~~n~~~iv~ 336 (425)
.++..+.-+++++.|+-.... .+..+. .......++..+.+. ..+..++-+++..++|++.. ..++. +
T Consensus 102 ~~~~~~ml~lR~l~NlF~~~~~g~~l~~-~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 102 KNITLTMLTVRILVNCFNNENWGVKLLE-SNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHT-SHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CchhHHHHHHHHHHHcccCCchHHHHHh-cchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 567788889999999988777 444433 334455666655221 01445777888899999862 11111 1
Q ss_pred hCchHHHHHHhhc--------cCCcchHHHHHHHHHHHhC
Q 041408 337 SGAVFELIELELT--------ASEKKTTELILGILFHLCS 368 (425)
Q Consensus 337 ~G~v~~Lv~lL~~--------~~~~~~~e~Al~~L~~L~~ 368 (425)
......+++.+.. ..+.+..-+++-+|.+|..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 3344566666652 1266777888888888885
No 280
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.55 E-value=1.2e+02 Score=18.06 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=10.6
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ytq_A 11 KPYGCSECGKAFSSK 25 (46)
T ss_dssp CSCBCSSSCCBCSCH
T ss_pred CCcCCCccChhhCCh
Confidence 448899888777543
No 281
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.53 E-value=75 Score=22.46 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.0
Q ss_pred CCcccCcCCccCCC--Cceec-CCCccccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMK--DPVTA-ITGITYDRESIEHWLF 104 (425)
Q Consensus 70 p~~~~Cpi~~~~m~--dPV~~-~~g~t~~r~~I~~~~~ 104 (425)
++-|.|..|...+. ++..+ ..|..||+.+-.+.+.
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 44577777777774 34443 5677777777665553
No 282
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.13 E-value=79 Score=21.48 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHHHHH
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEHWLF 104 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~~~~ 104 (425)
++-|.|..|...|.+ ......|..||+.+..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 455888888887754 33456788888888766553
No 283
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.59 E-value=57 Score=22.03 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=18.2
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHH
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEH 101 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~ 101 (425)
++-|.|..|...+.+ +.....|..||+.+..+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 344667777666554 23445666677666543
No 284
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.48 E-value=59 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=23.4
Q ss_pred cccCcCCccCC-CCceecCCCccccHHHHHHHHHc-CCCCCCCCCCCCCCCC
Q 041408 72 YFICPISLQIM-KDPVTAITGITYDRESIEHWLFQ-GNNNAECPVTKQPLPK 121 (425)
Q Consensus 72 ~~~Cpi~~~~m-~dPV~~~~g~t~~r~~I~~~~~~-~~~~~~cP~~~~~l~~ 121 (425)
.|.|+.|...| ... ..+..+... +...+.|+.|+..+..
T Consensus 34 ~~~C~~C~k~F~~~~-----------~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTI-----------EGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSH-----------HHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred CcCCCCCCCCcccCH-----------HHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 48898877766 443 333333321 1125789999988754
No 285
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.36 E-value=2.1e+02 Score=27.81 Aligned_cols=107 Identities=4% Similarity=-0.098 Sum_probs=61.7
Q ss_pred cHHHHHHHHHhcCCChHHHHhhhhchhchHHHHHHHHccccccc--cCCHHHHHHHHHHHHHHHhcccchhHhhcchhHH
Q 041408 220 GLEGALSILHFFKITSEYMKLSAFEIDKIVESFTWVLALDDESI--ENHKEIKSHALRILKNIIQAASSKFLQRLKPQIF 297 (425)
Q Consensus 220 ~~~~Al~~L~~L~~~~~~~~~~v~~~~g~i~~Lv~lL~~~~~~~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i 297 (425)
.+--++++|.|+-.+..-...++... ...+.++..+......+ ..+...+..++.++.|++........ ...+.
T Consensus 278 n~MltlR~laNlF~~~~~g~~ll~~~-~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~ 353 (425)
T 3pst_A 278 LTMLTVRILVNCFNNENWGVKLLESN-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELL 353 (425)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTSH-HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHhhCc-hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHH
Confidence 36678889999876665334455432 34555665553210000 12456788889999999875322111 11244
Q ss_pred HHHHHHhcc--c-----cCChHHHHHHHHHHHHhCCCCCc
Q 041408 298 QNIIRVLKQ--R-----VIAQQGINAALKLMLDACPSGRN 330 (425)
Q Consensus 298 ~~Lv~lL~~--~-----~~~~~~~~~A~~aL~~L~~~~~n 330 (425)
..++..+.. + ..++++.-.++-||.+|...+..
T Consensus 354 ~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 354 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 566666651 0 12678888888888888864433
No 286
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=22.30 E-value=1.1e+02 Score=22.23 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=13.2
Q ss_pred CCCCcccCcCCccCCCCc
Q 041408 68 EIPEYFICPISLQIMKDP 85 (425)
Q Consensus 68 ~~p~~~~Cpi~~~~m~dP 85 (425)
.-...|.|++|...|...
T Consensus 13 ~~~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCCCBCSSSCCBCSSH
T ss_pred CCCcCeECCCCCCccCCH
Confidence 345568999999888643
No 287
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=21.79 E-value=67 Score=19.31 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=11.3
Q ss_pred CcccCcCCccCCCCc
Q 041408 71 EYFICPISLQIMKDP 85 (425)
Q Consensus 71 ~~~~Cpi~~~~m~dP 85 (425)
..|.|++|...|..+
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 11 KPFKCVECGKGFSRR 25 (46)
T ss_dssp CSBCCSSSCCCBSST
T ss_pred CCcccCccCcccCCH
Confidence 458899998887654
No 288
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.76 E-value=31 Score=23.67 Aligned_cols=41 Identities=7% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ--GNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~--~~~~~~cP~~~~~l~~ 121 (425)
...|.|++|...|...- .+..+... +...+.|+.|+..+..
T Consensus 15 ~~~~~C~~C~k~f~~~~-----------~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKG-----------NLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHH-----------HHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHH-----------HHHHHHHHcCCCCCEECCCCCchhCC
Confidence 45689999988886542 23333321 1124689999887753
No 289
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.74 E-value=58 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=11.7
Q ss_pred ccCcCCccCCCC-ceecCCCccccHHHH
Q 041408 73 FICPISLQIMKD-PVTAITGITYDRESI 99 (425)
Q Consensus 73 ~~Cpi~~~~m~d-PV~~~~g~t~~r~~I 99 (425)
|.|..|...+.+ +.....|..||+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy 61 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCY 61 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHH
Confidence 455555444443 222334444554443
No 290
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.71 E-value=87 Score=18.69 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=10.0
Q ss_pred CcccCcCCccCCCC
Q 041408 71 EYFICPISLQIMKD 84 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d 84 (425)
..|.|++|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eml_A 11 KPYECSVCGKAFSH 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCcCCccCC
Confidence 44889988776644
No 291
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=21.70 E-value=40 Score=31.61 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=21.4
Q ss_pred CCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 041408 90 TGITYDRESIEHWLFQGNNNAECPVTKQPLPK 121 (425)
Q Consensus 90 ~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~~ 121 (425)
||++|.+..+.+...... .+.||.|+..+.+
T Consensus 167 C~~~~~~~~~~~~i~~~~-~P~C~~Cgg~lrP 197 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIFSEV-TPKCEDCQSLVKP 197 (323)
T ss_dssp TCCEECHHHHHHHHHTTC-CCBCTTTCCBEEE
T ss_pred cCccccHHHHHHhhccCC-CCCCcCCCCccCC
Confidence 778888876665444432 5799999977643
No 292
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.46 E-value=53 Score=25.86 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=27.7
Q ss_pred ccCcCCccCCCCce-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 041408 73 FICPISLQIMKDPV-TAITGITYDRESIEHWLFQGNNNAECPVTKQPLP 120 (425)
Q Consensus 73 ~~Cpi~~~~m~dPV-~~~~g~t~~r~~I~~~~~~~~~~~~cP~~~~~l~ 120 (425)
-.|+-|++...+.. +..-|..|=+.| ++|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C-----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC-----------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT-----------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc-----------cCcCcCCCccc
Confidence 57999998887774 556777777755 77888888774
No 293
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.17 E-value=51 Score=23.47 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=16.6
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHH
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESI 99 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I 99 (425)
++-|.|..|...|.+--....|..||+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy 68 (79)
T 2cor_A 39 PDHFNCANCGKELTADARELKGELYCLPCH 68 (79)
T ss_dssp TTTSBCSSSCCBCCTTCEEETTEEECHHHH
T ss_pred CCCCEeCCCCCccCCCCEeECCEEeCHHHH
Confidence 344666666666554433345666666553
No 294
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.12 E-value=18 Score=24.84 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCcccCcCCccCCCCceecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCC
Q 041408 70 PEYFICPISLQIMKDPVTAITGITYDRESIEHWLFQ--GNNNAECPVTKQPLPK 121 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dPV~~~~g~t~~r~~I~~~~~~--~~~~~~cP~~~~~l~~ 121 (425)
...|.|++|...|..+. .+..+... +...+.||.|+..+..
T Consensus 12 ~k~~~C~~C~k~f~~~~-----------~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSS-----------ILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHH-----------HHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHH-----------HHHHHHHhcCCCCCeECCCCCcccCC
Confidence 34589999888775442 33333332 1124689999877743
No 295
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=97 Score=18.46 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=9.9
Q ss_pred CcccCcCCccCCCC
Q 041408 71 EYFICPISLQIMKD 84 (425)
Q Consensus 71 ~~~~Cpi~~~~m~d 84 (425)
..|.|++|+..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ene_A 11 KPYKCNECGKVFRH 24 (46)
T ss_dssp SSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45889888776644
No 296
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=43 Score=24.47 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.0
Q ss_pred CCcccCcCCccCCCC-ceecCCCccccHHHHHHHH
Q 041408 70 PEYFICPISLQIMKD-PVTAITGITYDRESIEHWL 103 (425)
Q Consensus 70 p~~~~Cpi~~~~m~d-PV~~~~g~t~~r~~I~~~~ 103 (425)
++-|.|..|...|.+ ......|..||+.|..+.+
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 556999999988875 3455788999998876654
No 297
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.72 E-value=4.9e+02 Score=25.16 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhHhhcchhHHHHHHHHhccc----c--CChHHHHHHHHHHHHhCCCC-CchHHHHhh
Q 041408 265 NHKEIKSHALRILKNIIQAASSKFLQRLKPQIFQNIIRVLKQR----V--IAQQGINAALKLMLDACPSG-RNRMIMVES 337 (425)
Q Consensus 265 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~--~~~~~~~~A~~aL~~L~~~~-~n~~~iv~~ 337 (425)
.++..+.-++++|.|+-........+.........+++.+... . .+..++-+++..++|++..- ..+. +.
T Consensus 274 ~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~ 350 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 350 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CT
T ss_pred CChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hH
Confidence 5677888889999999877764444444434556777766321 0 13457778888899998621 1110 12
Q ss_pred CchHHHHHHhhc--------cCCcchHHHHHHHHHHHhCC
Q 041408 338 GAVFELIELELT--------ASEKKTTELILGILFHLCSC 369 (425)
Q Consensus 338 G~v~~Lv~lL~~--------~~~~~~~e~Al~~L~~L~~~ 369 (425)
..++.+++.+.. ..+.++.-+++-+|.+|...
T Consensus 351 el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 351 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 345567776651 12678888899999999863
No 298
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.60 E-value=1.3e+02 Score=19.30 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=17.7
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 041408 6 YDYRILLPFCKTNEQNLLLFLSKLLIKL 33 (425)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (425)
.||+.||+- =++++|+|++|+=.++
T Consensus 7 ~dle~~KqE---IL~E~RkElqK~K~EI 31 (45)
T 1use_A 7 SDLQRVKQE---LLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 356666653 5788899999976663
No 299
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.52 E-value=62 Score=19.47 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=11.3
Q ss_pred CCcccCcCCccCCCCc
Q 041408 70 PEYFICPISLQIMKDP 85 (425)
Q Consensus 70 p~~~~Cpi~~~~m~dP 85 (425)
...|.|++|...|..+
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 10 EKPYKCVECGKGYKRR 25 (46)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeECcccCchhCCH
Confidence 3458899988877543
Done!