BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041414
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 73 PKTHECSVCGLEFAIGQALGGHMRRH 98
P+++ CS C EF QALGGHM H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 27 RAFECKTCNRQFPSFQALGGHRASH 51
R++ C C R+F S QALGGH H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 28 AFECKTCNRQFPSFQALGGHRASHKKSRVTEGSGGGVD-TQQSPVKPKT--------HEC 78
+F+CK C + F L H H +R G Q+S +K T H+C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 79 SVCGLEFAIGQALGGHMRRH 98
VCG F+ L H R+H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 71 VKPKTHECSVCGLEFAIGQALGGHMRR-HRAGAS 103
V P ++ C+VC F+ AL H+R HR AS
Sbjct: 94 VNPSSYVCNVCNARFSTMSALSEHLRSDHRDDAS 127
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 71 VKPKTHECSVCGLEFAIGQALGGHMRR-HRAGAS 103
V P ++ C+VC F+ AL H+R HR AS
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 74 KTHECSVCGLEFAIGQALGGHMRRH 98
K +ECSVCG F+ Q+L H R H
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 23 AVADRAFECKTCNRQFPSFQALGGHRASHKKSRVTEGSGG 62
A++ F C TC++ F AL HR H + + S G
Sbjct: 7 GTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSSG 46
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 19/84 (22%)
Query: 15 DAVNGVNMAVADRAFECKTCNRQFPSFQALGGHRASHKKSRVTEGSGGGVDTQQSPVKPK 74
D + + + F+C+ C R F L H +H T + P
Sbjct: 21 DLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--------------TGEKPF--- 63
Query: 75 THECSVCGLEFAIGQALGGHMRRH 98
C +CG +FA H + H
Sbjct: 64 --ACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 19/79 (24%)
Query: 20 VNMAVADRAFECKTCNRQFPSFQALGGHRASHKKSRVTEGSGGGVDTQQSPVKPKTHECS 79
+ + + F+C+ C R F +L H +H T + P C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQQASLNAHIRTH--------------TGEKPF-----ACD 66
Query: 80 VCGLEFAIGQALGGHMRRH 98
+CG +FA H + H
Sbjct: 67 ICGRKFATLHTRTRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 19/79 (24%)
Query: 20 VNMAVADRAFECKTCNRQFPSFQALGGHRASHKKSRVTEGSGGGVDTQQSPVKPKTHECS 79
+ + + F+C+ C R F L H +H T + P C
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH--------------TGEKPF-----ACD 66
Query: 80 VCGLEFAIGQALGGHMRRH 98
+CG +FA H + H
Sbjct: 67 ICGRKFATLHTRDRHTKIH 85
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 74 KTHECSVCGLEFAIGQALGGHMRRH 98
K + C+VCG F + L H+R H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|3R5E|A Chain A, Transaldolase From Corynebacterium Glutamicum
Length = 360
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 97 RHRAGASHANEKLSAFSSLSDTAPLVEKANSRRVLC 132
R +AG ++A + + L D A L E AN++R L
Sbjct: 226 RGKAGVANAQRAYAVYKELFDAAELPEGANTQRPLW 261
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 27 RAFECKTCNRQFPSFQALGGHRASH 51
+ F+CKTC R+F L H +H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,521,135
Number of Sequences: 62578
Number of extensions: 159967
Number of successful extensions: 574
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 94
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)