BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041416
(491 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 219/468 (46%), Gaps = 48/468 (10%)
Query: 32 TLDLTYFDFFWFKNPPVERLFFYEMTDLTWDLFNSEIXXXXXXXXXXXXXXXXXXAGH-I 90
+L LT+FDFFW ++PP+ LFFYE+ +T F + G +
Sbjct: 26 SLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLV 84
Query: 91 MWPLDAAKPAVYYFPDQNDGVSFAVAEWSSESHAGFHHLSGNGIRQAVEFHPLVPQLS-- 148
++P KP + Y + V+FA E + + L+GN R +F+ LVP L
Sbjct: 85 VYPAPTKKPEICYVEGDSVAVTFA------ECNLDLNELTGNHPRNCDKFYDLVPILGES 138
Query: 149 --LTDD-KAEVIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYLCKQLQLCHHP 205
L+D K + ++Q+TLFPNQG +IG+++HH + D T FLK+W + +
Sbjct: 139 TRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN-NDES 197
Query: 206 CLSPELTPLLDRTVIKDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLPFLDSESLNKLVR 265
L+ PL DR +IK P D L + V S N D V L S +KL R
Sbjct: 198 FLANGTRPLYDR-IIKYPM-LDEAYLKRAKVESFNED-------YVTQSLAGPS-DKL-R 246
Query: 266 ATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMXXXXXXXXXXXXXX 325
ATF LTR I +L+ +V QL ++S+F + AY++ C+
Sbjct: 247 ATFILTRAVINQLKDRVLAQLPTLE-----YVSSFTVACAYIWSCIAKSR---------- 291
Query: 326 XXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDFVQENGVAFVAEML 385
ND+++ + GF D +R+ PPIP YFGNC G AK + + G A+++
Sbjct: 292 ---NDKLQ--LFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 386 SDMV-KGXXXXXXXXXXXXVSEILEILKEG--AIIFSVAGSTQFDVYGSDFGWGRPKKVE 442
+ + K + +++ EG + V+G+ + Y DFGWG+PKK+E
Sbjct: 347 GENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLE 406
Query: 443 IVSIDRTQAISLAERRDXXXXXXXXXXLEKQQMEVFESLFADGLKSDL 490
VSID AIS+ ++ + QME F +F DGLK+ L
Sbjct: 407 TVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGLKAYL 454
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 215/468 (45%), Gaps = 48/468 (10%)
Query: 32 TLDLTYFDFFWFKNPPVERLFFYEMTDLTWDLFNSEIXXXXXXXXXXXXXXXXXXAGH-I 90
+L LT+FDFFW ++PP+ LFFYE+ +T F + G +
Sbjct: 26 SLQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLV 84
Query: 91 MWPLDAAKPAVYYFPDQNDGVSFAVAEWSSESHAGFHHLSGNGIRQAVEFHPLVPQLS-- 148
++P KP + Y + V+FA E + + L+GN R +F+ LVP L
Sbjct: 85 VYPAPTKKPEICYVEGDSVAVTFA------ECNLDLNELTGNHPRNCDKFYDLVPILGES 138
Query: 149 --LTDD-KAEVIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYLCKQLQLCHHP 205
L+D K + ++Q+TLFPNQG +IG+++HH + D T FLK+W + +
Sbjct: 139 TRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN-NDES 197
Query: 206 CLSPELTPLLDRTVIKDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLPFLDSESLNKLVR 265
L+ PL DR +IK P D L + V S N D V L S +KL R
Sbjct: 198 FLANGTRPLYDR-IIKYPX-LDEAYLKRAKVESFNED-------YVTQSLAGPS-DKL-R 246
Query: 266 ATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMXXXXXXXXXXXXXX 325
ATF LTR I +L+ +V QL ++S+F + AY++ C+
Sbjct: 247 ATFILTRAVINQLKDRVLAQLPTLE-----YVSSFTVACAYIWSCIAKSR---------- 291
Query: 326 XXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDFVQENGVAFVAEML 385
ND+++ + GF D +R PPIP YFGNC G AK + + G A+++
Sbjct: 292 ---NDKLQ--LFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 386 SDMV-KGXXXXXXXXXXXXVSEILEILKEGAIIFS--VAGSTQFDVYGSDFGWGRPKKVE 442
+ + K +++ EG V+G+ + Y DFGWG+PKK+E
Sbjct: 347 GENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLE 406
Query: 443 IVSIDRTQAISLAERRDXXXXXXXXXXLEKQQMEVFESLFADGLKSDL 490
VSID AIS+ ++ + Q E F +F DGLK+ L
Sbjct: 407 TVSIDHNGAISINSCKESNEDLEIGVCISATQXEDFVHIFDDGLKAYL 454
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 191/432 (44%), Gaps = 41/432 (9%)
Query: 28 TTSFTLDLTYFDFFWFKNPPVERLFFYEMTDLTWDLFNSEIXXXXXXXXXXXXXXXXXXA 87
T TL LTYFD W R+ FY++ D F I A
Sbjct: 17 ATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPD-FVQTIIPTLKDSLSLTLKYYLPLA 75
Query: 88 GHIMWPLD-AAKPAVYYFPDQNDGVSFAVAEWSSESHAGFHHLSGNGIRQAVEFHPLVPQ 146
G++ P D + P + Y + V F SES F++L G R +F+ VPQ
Sbjct: 76 GNVACPQDWSGYPELRYVTGNSVSVIF------SESDXDFNYLIGYHPRNTKDFYHFVPQ 129
Query: 147 LSLTDDK-----AEVIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYLCKQLQL 201
L+ D A V+AIQ+TLFPN G SIG ++HH DG T F+++WA L K
Sbjct: 130 LAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGG- 188
Query: 202 CHHPCLSPELTPLLDRTVIKDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLPFLDSESLN 261
L+ E P DR+VIKDP G + + W K + P
Sbjct: 189 -DEQFLANEFIPFYDRSVIKDPNG---VGXSIWNEXKKYKHXXKXSDVVTPP-------- 236
Query: 262 KLVRATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMXXXXXXXXXX 321
VR TF +TR DI KL++ L + + K H+++F +T AYV+ C+
Sbjct: 237 DKVRGTFIITRHDIGKLKN-----LVLTRRPKLTHVTSFTVTCAYVWTCI-------IKS 284
Query: 322 XXXXXXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDFVQENGVAFV 381
+ DE G AD ++ +PP+P +YFGN + + D + G
Sbjct: 285 EAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIA 344
Query: 382 AEMLSDMV-KGXXXXXXXXXXXXVSEILEILKEGAIIFSVAGSTQFDVYGSDFGWGRPKK 440
E++ + + K E ++ + ++ SVAGS + D+Y +DFGWGRP+K
Sbjct: 345 VELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSL--SVAGSPKLDLYAADFGWGRPEK 402
Query: 441 VEIVSIDRTQAI 452
+E VSID I
Sbjct: 403 LEFVSIDNDDGI 414
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 138 VEFHPLVPQLSLTDDKAE--VIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYL 195
+E L+P + + + ++ +Q+T F G S+GV H DG + F+ SW+ +
Sbjct: 114 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 173
Query: 196 CKQLQLCHHPCLSPELTPLLDRTVI--KDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLP 253
+ L + L P +DRT++ +DP Q Q ++ Q +LKV P
Sbjct: 174 ARGLDVT--------LPPFIDRTLLRARDPP-QPQFQHIEY---------QPPPALKVSP 215
Query: 254 -FLDSESLNKLVRATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMX 312
S+S+ + + F+LTRE I+ L+ K + S++ + +V+ C
Sbjct: 216 QTAKSDSVPETAVSIFKLTREQISALKAK------SKEDGNTISYSSYEMLAGHVWRC-- 267
Query: 313 XXXXXXXXXXXXXXXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDF 372
+ D+ + + D +RL P +P YFGN A AGD
Sbjct: 268 --------ACKARGLEVDQGTKLYI--ATDGRARLRPSLPPGYFGNVIFTATPIAIAGD- 316
Query: 373 VQENGVAFVAEMLSDMVK--GXXXXXXXXXXXXVSEILEILKEGAIIF-----SVAGSTQ 425
++ V + A + D + + L+ L GA F + +
Sbjct: 317 LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVR 376
Query: 426 FDVYGSDFGWGRP 438
++ +DFGWGRP
Sbjct: 377 LPIHDADFGWGRP 389
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 49/313 (15%)
Query: 138 VEFHPLVPQLSLTDDKAE--VIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYL 195
+E L+P + + + ++ +Q+T F G S+GV H DG + F+ SW+ +
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 196 CKQLQLCHHPCLSPELTPLLDRTVI--KDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLP 253
+ L + L P +DRT++ +DP Q Q ++ Q +L V P
Sbjct: 177 ARGLDVT--------LPPFIDRTLLRARDPP-QPQFQHIEY---------QPPPALAVSP 218
Query: 254 -FLDSESLNKLVRATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMX 312
S+S+ + + F+LTRE I+ L+ K + S++ + +V+ C
Sbjct: 219 QTAASDSVPETAVSIFKLTREQISALKAK------SKEDGNTISYSSYEMLAGHVWRC-- 270
Query: 313 XXXXXXXXXXXXXXXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDF 372
+ D+ + + D +RL P +P YFGN A AGD
Sbjct: 271 --------ACKARGLEVDQGTKLYI--ATDGRARLRPSLPPGYFGNVIFTATPIAIAGD- 319
Query: 373 VQENGVAFVAEMLSDMVK--GXXXXXXXXXXXXVSEILEILKEGAIIF-----SVAGSTQ 425
++ V + A + D + + L+ L GA F + +
Sbjct: 320 LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVR 379
Query: 426 FDVYGSDFGWGRP 438
++ +DFGWGRP
Sbjct: 380 LPIHDADFGWGRP 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 49/313 (15%)
Query: 138 VEFHPLVPQLSLTDDKAE--VIAIQITLFPNQGFSIGVSSHHAILDGKTSTLFLKSWAYL 195
+E L+P + + + ++ +Q+T F G S+GV H DG + F+ SW+ +
Sbjct: 117 LELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDM 176
Query: 196 CKQLQLCHHPCLSPELTPLLDRTVI--KDPTGQDMLQLNKWVVGSDNSDPQKIRSLKVLP 253
+ L + L P +DRT++ +DP Q Q ++ Q +L V P
Sbjct: 177 ARGLDVT--------LPPFIDRTLLRARDPP-QPQFQHIEY---------QPPPALAVSP 218
Query: 254 -FLDSESLNKLVRATFELTREDITKLRHKVNHQLSKSSKSKQVHLSTFVLTLAYVFVCMX 312
S+S+ + + F+LTRE I+ L+ K + S++ + +V+ C
Sbjct: 219 QTAASDSVPETAVSIFKLTREQISALKAK------SKEDGNTISYSSYEMLAGHVWRC-- 270
Query: 313 XXXXXXXXXXXXXXXDNDEIKNIIVGFTADYSSRLDPPIPLNYFGNCNGRHCETAKAGDF 372
+ D+ + + D +RL P +P YFGN A AGD
Sbjct: 271 --------ACKARGLEVDQGTKLYI--ATDGRARLRPSLPPGYFGNVIFTATPIAIAGD- 319
Query: 373 VQENGVAFVAEMLSDMVK--GXXXXXXXXXXXXVSEILEILKEGAIIF-----SVAGSTQ 425
++ V + A + D + + L+ L GA F + +
Sbjct: 320 LEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVR 379
Query: 426 FDVYGSDFGWGRP 438
++ +DFGWGRP
Sbjct: 380 LPIHDADFGWGRP 392
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 22/105 (20%)
Query: 131 GNGIRQAVEFHPL---VPQLSLTDDKAEV-----IAIQITLFPNQGFSIGVSSHHAILDG 182
I+ VE L +P + K EV +A++I+ F G +IGV+ H I D
Sbjct: 106 SQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADV 165
Query: 183 KTSTLFLKSWAYLCK----------QLQLCHHPCL----SPELTP 213
+ FL +W C+ L H P + SPEL P
Sbjct: 166 LSLATFLNAWTATCRGETEIVLPNFDLAARHFPPVDNTPSPELVP 210
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 117 EWSSE--SHAGFHHL-SGNGIRQAVEFHPLVPQLSLTDDKAEVIA-----IQITLFPNQG 168
+W+ E S F HL + NGI+ E + L+P+ + K +++ ++ +L+P +G
Sbjct: 132 KWTHEQGSVXXFEHLINSNGIKPVXEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKG 191
Query: 169 FSIGVSSHHAILDGKTSTLFLKSWAYLCKQLQLCHH 204
S + I+ K + + + W Y + CHH
Sbjct: 192 RPENKSFLYEIVSNKRNGIDVDKWDYFARD---CHH 224
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 190 KSWAYLCKQLQLCHHPCL--SPELTPLLDRTVIKDPTGQDMLQLNKWVVGSDNSDPQKIR 247
++W LC+ L LC+ + P+ R VI D + +L+ ++ +G+ ++
Sbjct: 426 ETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFP 485
Query: 248 SLKVLPFLDSESLNKLVRATFEL---TREDITKLRH 280
+ +PF S NK F+L T ED RH
Sbjct: 486 KVCEIPF---NSTNK-----FQLSIHTLEDPRDPRH 513
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,604,775
Number of Sequences: 62578
Number of extensions: 455193
Number of successful extensions: 820
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 10
length of query: 491
length of database: 14,973,337
effective HSP length: 103
effective length of query: 388
effective length of database: 8,527,803
effective search space: 3308787564
effective search space used: 3308787564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)