BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041418
         (349 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
           Reticulum Aminopeptidase 1 Erap1
 pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
           Reticulum Aminopeptidase 1 Erap1
 pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
           Reticulum Aminopeptidase 1 Erap1
          Length = 954

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 32  PAHLEISTRH-VYQLWIAEGFIEDNNEATAK--KYLEQLINRGFVEANK-RRAGGTINTC 87
           P HL IS    V  + +AEG IED+ + T K   YL   I   F   +K  ++G  ++  
Sbjct: 217 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVY 276

Query: 88  SIPGRC 93
           ++P + 
Sbjct: 277 AVPDKI 282


>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
           Endoplasmic Reticulum Aminopeptidase 1 Erap1
          Length = 897

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 32  PAHLEISTRH-VYQLWIAEGFIEDNNEATAK--KYLEQLINRGFVEANK-RRAGGTINTC 87
           P HL IS    V  + +AEG IED+ + T K   YL   I   F   +K  ++G  ++  
Sbjct: 166 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVY 225

Query: 88  SIPGRC 93
           ++P + 
Sbjct: 226 AVPDKI 231


>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
           Inhibitor, Bestatin
 pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
           Inhibitor, Bestatin
 pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
           Inhibitor, Bestatin
          Length = 921

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 32  PAHLEISTRH-VYQLWIAEGFIEDNNEATAK--KYLEQLINRGFVEANK-RRAGGTINTC 87
           P HL IS    V  + +AEG IED+ + T K   YL   I   F   +K  ++G  ++  
Sbjct: 175 PRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVY 234

Query: 88  SIPGRCRPVLLGVASKVEFI 107
           ++P +       + + V  +
Sbjct: 235 AVPDKINQADYALDAAVTLL 254


>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
           With N358q Point Mutation
          Length = 319

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 92  RCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDW 140
           R +P L+ VAS  + + S F+   D++D     +  C P S +I P+ W
Sbjct: 156 RMQPSLVCVASVTDVVDSRFLVHFDNWDDTYDYW--CDPSSPYIHPVGW 202


>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
           With D355a Point Mutation
          Length = 319

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 91  GRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDW 140
            R  P L+ VAS  + + S F+   D++D     +  C P S +I P+ W
Sbjct: 155 ARMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYW--CDPSSPYIHPVGW 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,057,027
Number of Sequences: 62578
Number of extensions: 396965
Number of successful extensions: 887
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 15
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)