Query 041418
Match_columns 349
No_of_seqs 515 out of 3569
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-39 2.6E-44 329.1 13.0 217 3-225 394-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 2E-29 4.3E-34 266.2 19.3 294 4-320 420-836 (1153)
3 PLN00113 leucine-rich repeat r 99.7 2.5E-17 5.4E-22 173.2 11.2 168 152-320 156-367 (968)
4 PLN00113 leucine-rich repeat r 99.7 1.4E-16 3.1E-21 167.5 13.4 199 116-320 89-343 (968)
5 KOG0444 Cytoskeletal regulator 99.6 4.7E-18 1E-22 160.1 -3.4 201 116-320 74-373 (1255)
6 KOG4194 Membrane glycoprotein 99.6 1.9E-15 4.1E-20 141.7 4.9 179 156-339 169-443 (873)
7 KOG0472 Leucine-rich repeat pr 99.5 8.2E-16 1.8E-20 138.3 -0.4 60 152-213 243-303 (565)
8 KOG0444 Cytoskeletal regulator 99.5 3.3E-16 7.2E-21 147.8 -4.4 122 152-275 95-251 (1255)
9 KOG0617 Ras suppressor protein 99.4 1.8E-15 3.8E-20 121.6 -5.6 144 158-308 31-195 (264)
10 PLN03210 Resistant to P. syrin 99.4 1.1E-12 2.3E-17 139.7 12.7 57 155-213 652-710 (1153)
11 KOG0472 Leucine-rich repeat pr 99.4 2.8E-15 6.1E-20 134.9 -6.3 167 152-321 106-309 (565)
12 KOG4194 Membrane glycoprotein 99.4 8.6E-14 1.9E-18 130.7 2.2 197 119-320 77-352 (873)
13 KOG0618 Serine/threonine phosp 99.2 4.5E-12 9.7E-17 124.9 0.8 157 161-320 242-487 (1081)
14 KOG0618 Serine/threonine phosp 99.1 1.4E-11 3.1E-16 121.4 2.1 195 121-320 46-321 (1081)
15 PRK15387 E3 ubiquitin-protein 99.1 1.7E-10 3.7E-15 115.9 9.5 151 161-320 283-456 (788)
16 KOG4237 Extracellular matrix p 99.1 1.3E-11 2.9E-16 111.2 0.4 176 154-329 85-372 (498)
17 PRK15370 E3 ubiquitin-protein 99.1 6.3E-10 1.4E-14 112.2 11.7 145 160-320 220-378 (754)
18 KOG0617 Ras suppressor protein 99.0 6.3E-12 1.4E-16 101.3 -3.9 143 114-275 27-179 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.5E-15 116.8 6.3 98 113-213 538-648 (889)
20 PRK15387 E3 ubiquitin-protein 99.0 1.4E-09 3E-14 109.5 8.0 150 159-320 241-413 (788)
21 PRK15370 E3 ubiquitin-protein 98.9 1.3E-09 2.8E-14 110.0 7.2 184 120-320 199-426 (754)
22 KOG4237 Extracellular matrix p 98.9 1.5E-10 3.2E-15 104.6 -1.2 184 162-348 69-335 (498)
23 cd00116 LRR_RI Leucine-rich re 98.8 2.7E-09 5.9E-14 98.0 4.2 156 154-320 75-289 (319)
24 PF14580 LRR_9: Leucine-rich r 98.8 3.9E-09 8.5E-14 87.7 2.7 124 117-275 16-146 (175)
25 cd00116 LRR_RI Leucine-rich re 98.7 8E-09 1.7E-13 94.9 3.3 188 152-348 43-291 (319)
26 PF14580 LRR_9: Leucine-rich r 98.6 8.7E-09 1.9E-13 85.6 -0.1 130 156-319 15-150 (175)
27 KOG3207 Beta-tubulin folding c 98.5 1.6E-08 3.4E-13 92.8 0.5 157 155-320 141-337 (505)
28 PF13855 LRR_8: Leucine rich r 98.5 7.8E-08 1.7E-12 65.6 3.5 43 160-202 1-43 (61)
29 KOG0532 Leucine-rich repeat (L 98.5 1.6E-08 3.4E-13 95.6 -1.7 156 159-320 74-245 (722)
30 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 90.3 4.0 160 155-320 111-288 (394)
31 PF12799 LRR_4: Leucine Rich r 98.4 3E-07 6.6E-12 58.0 3.9 41 160-201 1-41 (44)
32 KOG1259 Nischarin, modulator o 98.4 3.3E-08 7.2E-13 86.7 -1.5 47 159-207 283-329 (490)
33 KOG0532 Leucine-rich repeat (L 98.4 4.4E-08 9.6E-13 92.6 -1.1 60 152-213 113-172 (722)
34 KOG3207 Beta-tubulin folding c 98.3 1.6E-07 3.4E-12 86.3 1.8 152 157-320 118-312 (505)
35 KOG1259 Nischarin, modulator o 98.3 1.6E-07 3.5E-12 82.5 0.7 38 282-320 371-410 (490)
36 PF13855 LRR_8: Leucine rich r 98.2 8.6E-07 1.9E-11 60.4 2.8 60 120-196 1-61 (61)
37 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 84.6 7.9 45 162-207 420-466 (623)
38 COG4886 Leucine-rich repeat (L 98.1 4.1E-06 8.9E-11 79.5 5.9 151 164-320 97-266 (394)
39 KOG1909 Ran GTPase-activating 98.1 8.3E-07 1.8E-11 79.5 0.9 166 154-320 86-309 (382)
40 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.3E-12 82.6 -4.1 143 161-320 186-374 (419)
41 PLN03150 hypothetical protein; 98.0 1.8E-05 3.9E-10 79.4 7.7 55 152-207 434-490 (623)
42 KOG1909 Ran GTPase-activating 97.9 4.4E-06 9.5E-11 75.0 2.3 219 116-347 26-310 (382)
43 PRK15386 type III secretion pr 97.9 4E-05 8.7E-10 71.7 8.1 41 158-202 50-91 (426)
44 KOG0531 Protein phosphatase 1, 97.8 7.3E-06 1.6E-10 78.3 1.4 57 155-213 90-146 (414)
45 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 7E-10 48.7 3.0 35 285-320 1-35 (44)
46 KOG2120 SCF ubiquitin ligase, 97.6 3.3E-06 7.2E-11 74.3 -4.1 131 185-320 186-349 (419)
47 KOG3665 ZYG-1-like serine/thre 97.5 0.0001 2.2E-09 74.3 5.0 108 229-338 146-281 (699)
48 KOG3665 ZYG-1-like serine/thre 97.5 4.9E-05 1.1E-09 76.6 2.4 53 159-213 147-201 (699)
49 KOG2982 Uncharacterized conser 97.5 0.00012 2.7E-09 64.7 4.2 159 157-319 94-289 (418)
50 KOG1859 Leucine-rich repeat pr 97.4 6.7E-06 1.5E-10 80.3 -4.9 93 161-259 165-268 (1096)
51 KOG0531 Protein phosphatase 1, 97.3 4.5E-05 9.7E-10 73.0 -0.4 77 117-213 92-168 (414)
52 KOG1644 U2-associated snRNP A' 97.1 0.00067 1.5E-08 56.8 4.7 100 161-275 43-146 (233)
53 KOG4341 F-box protein containi 96.9 0.00042 9E-09 64.0 1.3 113 228-343 317-457 (483)
54 KOG4579 Leucine-rich repeat (L 96.8 0.0005 1.1E-08 54.1 1.5 76 120-213 53-129 (177)
55 KOG2982 Uncharacterized conser 96.7 0.001 2.2E-08 59.1 2.2 39 159-197 70-110 (418)
56 PRK15386 type III secretion pr 96.7 0.0048 1E-07 58.0 6.8 124 181-319 49-187 (426)
57 KOG2123 Uncharacterized conser 96.6 0.00017 3.7E-09 63.2 -2.9 38 158-197 39-76 (388)
58 KOG1644 U2-associated snRNP A' 96.6 0.0037 8E-08 52.5 4.7 80 154-255 58-150 (233)
59 PF00560 LRR_1: Leucine Rich R 96.6 0.00092 2E-08 35.2 0.8 17 162-178 2-18 (22)
60 KOG1859 Leucine-rich repeat pr 96.5 5.5E-05 1.2E-09 74.2 -7.3 48 152-201 179-226 (1096)
61 PF00560 LRR_1: Leucine Rich R 96.3 0.0011 2.4E-08 34.8 0.3 22 185-206 1-22 (22)
62 COG5238 RNA1 Ran GTPase-activa 96.2 0.0042 9.1E-08 54.5 3.0 48 152-200 84-136 (388)
63 KOG4341 F-box protein containi 95.8 0.004 8.7E-08 57.7 1.6 92 229-320 292-412 (483)
64 smart00370 LRR Leucine-rich re 95.5 0.012 2.6E-07 32.2 2.2 22 159-180 1-22 (26)
65 smart00369 LRR_TYP Leucine-ric 95.5 0.012 2.6E-07 32.2 2.2 22 159-180 1-22 (26)
66 PF13504 LRR_7: Leucine rich r 95.5 0.0094 2E-07 29.1 1.4 16 161-176 2-17 (17)
67 PF13504 LRR_7: Leucine rich r 95.2 0.012 2.6E-07 28.7 1.4 17 184-200 1-17 (17)
68 KOG4579 Leucine-rich repeat (L 95.2 0.0062 1.3E-07 48.1 0.4 58 155-212 48-105 (177)
69 KOG2123 Uncharacterized conser 94.9 0.0043 9.4E-08 54.6 -1.5 52 159-213 18-69 (388)
70 KOG2739 Leucine-rich acidic nu 94.3 0.03 6.6E-07 48.9 2.4 42 156-198 61-105 (260)
71 COG5238 RNA1 Ran GTPase-activa 93.9 0.067 1.5E-06 47.2 3.9 38 283-320 212-253 (388)
72 KOG2739 Leucine-rich acidic nu 93.9 0.033 7.1E-07 48.7 1.9 61 243-319 89-153 (260)
73 PF13306 LRR_5: Leucine rich r 93.8 0.085 1.9E-06 41.1 4.0 44 156-201 8-51 (129)
74 smart00369 LRR_TYP Leucine-ric 93.5 0.07 1.5E-06 29.0 2.1 22 183-204 1-22 (26)
75 smart00370 LRR Leucine-rich re 93.5 0.07 1.5E-06 29.0 2.1 22 183-204 1-22 (26)
76 KOG3864 Uncharacterized conser 90.5 0.02 4.4E-07 48.1 -3.4 39 282-320 148-187 (221)
77 KOG1947 Leucine rich repeat pr 89.1 0.096 2.1E-06 50.6 -0.6 35 159-194 187-224 (482)
78 PF13306 LRR_5: Leucine rich r 86.2 0.45 9.7E-06 36.9 1.8 36 174-210 2-38 (129)
79 smart00364 LRR_BAC Leucine-ric 83.8 0.67 1.5E-05 25.3 1.2 17 161-177 3-19 (26)
80 KOG0473 Leucine-rich repeat pr 79.8 0.14 3.1E-06 44.2 -3.6 57 156-213 38-94 (326)
81 smart00365 LRR_SD22 Leucine-ri 78.3 1.8 3.8E-05 23.7 1.7 14 160-173 2-15 (26)
82 KOG1947 Leucine rich repeat pr 72.7 1.2 2.6E-05 43.0 0.1 78 242-319 240-331 (482)
83 KOG0473 Leucine-rich repeat pr 72.7 0.14 3.1E-06 44.2 -5.5 59 154-213 59-117 (326)
84 KOG3864 Uncharacterized conser 69.7 1.5 3.2E-05 37.2 -0.0 34 242-275 148-182 (221)
85 PF13516 LRR_6: Leucine Rich r 68.2 2.5 5.5E-05 22.2 0.7 12 161-172 3-14 (24)
86 smart00367 LRR_CC Leucine-rich 64.2 4.3 9.3E-05 21.8 1.2 12 309-320 2-13 (26)
87 smart00368 LRR_RI Leucine rich 62.4 6.4 0.00014 21.7 1.7 14 160-173 2-15 (28)
88 PF14162 YozD: YozD-like prote 50.7 31 0.00068 22.1 3.4 30 46-75 21-52 (57)
89 TIGR00864 PCC polycystin catio 45.1 15 0.00032 43.0 2.4 29 166-194 1-29 (2740)
90 PRK04841 transcriptional regul 37.9 54 0.0012 34.7 5.2 75 13-102 259-333 (903)
91 KOG3763 mRNA export factor TAP 36.9 26 0.00057 34.4 2.4 36 158-194 216-254 (585)
92 KOG3763 mRNA export factor TAP 34.2 26 0.00057 34.4 2.0 37 283-320 242-281 (585)
93 PF15385 SARG: Specifically an 28.6 25 0.00054 34.3 0.8 16 13-28 7-22 (497)
94 PF12802 MarR_2: MarR family; 28.2 1.7E+02 0.0037 18.8 5.1 58 17-82 3-60 (62)
95 PF13463 HTH_27: Winged helix 25.5 1.5E+02 0.0033 19.5 4.2 31 59-89 34-64 (68)
96 PF02082 Rrf2: Transcriptional 23.5 2.5E+02 0.0055 19.7 5.2 48 23-77 12-59 (83)
97 cd04441 DEP_2_DEP6 DEP (Dishev 22.9 2.3E+02 0.005 20.4 4.7 39 38-78 34-72 (85)
98 PF00610 DEP: Domain found in 22.8 2.5E+02 0.0055 19.0 5.2 41 37-79 18-60 (74)
99 cd04443 DEP_GPR155 DEP (Dishev 22.0 2.7E+02 0.0058 19.9 4.9 39 38-78 32-70 (83)
100 cd04440 DEP_2_P-Rex DEP (Dishe 20.8 2.6E+02 0.0057 20.5 4.7 40 38-79 39-78 (93)
101 KOG2297 Predicted translation 20.7 67 0.0015 29.3 1.9 53 2-54 113-165 (412)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=329.09 Aligned_cols=217 Identities=28% Similarity=0.357 Sum_probs=162.7
Q ss_pred hHhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHHhCCceeeee
Q 041418 3 LTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIED-----NNEATAKKYLEQLINRGFVEANK 77 (349)
Q Consensus 3 l~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~-----~~~~~~~~~~~~L~~~sll~~~~ 77 (349)
.+.|+++|++|||+||+++|.||+|||+|||||+|++++||.+||||||+.+ ++++.|..|+.+||++|+++...
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999999999999999999999999977 88999999999999999999877
Q ss_pred cCCCCceeeEEeChhHHHHHHHhhc-----ccCcccc----cccCcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCc
Q 041418 78 RRAGGTINTCSIPGRCRPVLLGVAS-----KVEFIFS----PFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFK 148 (349)
Q Consensus 78 ~~~~~~~~~~~mHdli~dla~~i~~-----~~~~~~~----R~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~ 148 (349)
.. ++..+|+|||+|||||.++|+ +++.... +.+.+...++..+|..++.++.........- .++++
T Consensus 474 ~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~---~~~L~ 548 (889)
T KOG4658|consen 474 DE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE---NPKLR 548 (889)
T ss_pred cc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC---CCccc
Confidence 54 566899999999999999999 4432221 1234445556666666666655543211100 01121
Q ss_pred ccc----------CC-cccCCCCCCCEEeecCC-CCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---
Q 041418 149 LLR----------YP-SGIENLFLLRYLKLNIP-SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN--- 213 (349)
Q Consensus 149 ~L~----------lp-~~i~~l~~L~~L~l~~~-~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~--- 213 (349)
.|- ++ +.|..|+.|++|||++| .+.++|++| ++|-+|++|+++++.++.+|.++++|.+|.+|+
T Consensus 549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 111 22 22666778888888866 567788888 888888888888887778888888888777777
Q ss_pred -----------hCCCCCCeeecc
Q 041418 214 -----------FGLSCLKSLKLA 225 (349)
Q Consensus 214 -----------~~l~~L~~L~l~ 225 (349)
..+.+|++|.+.
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ccccccccchhhhcccccEEEee
Confidence 226666666655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=2e-29 Score=266.23 Aligned_cols=294 Identities=16% Similarity=0.113 Sum_probs=182.5
Q ss_pred HhhHHHHHhhhCCCCC-CchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCC
Q 041418 4 TMSLGLQCIIYCMSPF-CLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGG 82 (349)
Q Consensus 4 ~~i~~~L~lSY~~L~~-~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~ 82 (349)
.+|.++|++|||+|++ ..|.||+||||||+++.++ .+..|.|.+... ++..++.|+++||++...
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~----- 485 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE----- 485 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-----
Confidence 4689999999999987 5999999999999997543 366778876653 344599999999998754
Q ss_pred ceeeEEeChhHHHHHHHhhcccCcccc-c-----------------------------cc-------CcCCCCCCCeeEE
Q 041418 83 TINTCSIPGRCRPVLLGVASKVEFIFS-P-----------------------------FM-------DIEDDYDSQLHSF 125 (349)
Q Consensus 83 ~~~~~~mHdli~dla~~i~~~~~~~~~-R-----------------------------~~-------~~~~~~~~~lr~l 125 (349)
.+++|||++|+||+++++++....+ | .. ......+++++.|
T Consensus 486 --~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 486 --DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred --CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 4599999999999999987642110 1 00 0113456667777
Q ss_pred EeecCCCCC------CCcchHHhhhccCcccc------------------------------CCcccCCCCCCCEEeecC
Q 041418 126 LCCSPESRH------IDPIDWEKICGMFKLLR------------------------------YPSGIENLFLLRYLKLNI 169 (349)
Q Consensus 126 ~~~~~~~~~------~~~~~~~~~~~~l~~L~------------------------------lp~~i~~l~~L~~L~l~~ 169 (349)
.+....... ..+..+.....+++.|. +|.++..+++|++|++++
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred EEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 664432110 00011111112233222 455566667777777766
Q ss_pred C-CCcccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC-----
Q 041418 170 P-SLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY----- 241 (349)
Q Consensus 170 ~-~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~----- 241 (349)
+ .++.+|. + +.+++|++|++++| .+..+|..++++++|+.|+ ..+++|+.+... .++++|+.|.+++|
T Consensus 644 ~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 644 SKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccc
Confidence 4 3556654 3 66777777777776 6667777777777776666 334444444331 35667777777776
Q ss_pred --CCCCCccEEEEeecCCCCCCcccccCCc-------------------------------cccccc--------ccccc
Q 041418 242 --LFPHSLTHLSFSNTDRMDDPMPVLETLP-------------------------------LLQKAD--------FWTMG 280 (349)
Q Consensus 242 --~~~~~L~~L~L~~~~l~~~~~~~l~~l~-------------------------------~L~~L~--------~~~~~ 280 (349)
....+|+.|++++|.+...|. . ..++ +|+.|. .++..
T Consensus 720 ~p~~~~nL~~L~L~~n~i~~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 720 FPDISTNISWLDLDETAIEEFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred cccccCCcCeeecCCCccccccc-c-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 234577888888877654331 1 1223 333333 22333
Q ss_pred cccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 281 NAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+.+++|+.|++++|..++.+|..+ .+++|+.|++++|.
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 3456667777777776667776644 56667777777665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=2.5e-17 Score=173.24 Aligned_cols=168 Identities=21% Similarity=0.252 Sum_probs=119.5
Q ss_pred CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCc-cccchhhhccccchhhh--------------hC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYI-DHTVDEFWKMKKLRHLN--------------FG 215 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l-~~lp~~i~~L~~L~~L~--------------~~ 215 (349)
+|..++++++|++|++++|.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|+ ++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 5667777778888888777765 567666 7788888888877743 45677777777777775 55
Q ss_pred CCCCCeeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418 216 LSCLKSLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD 275 (349)
Q Consensus 216 l~~L~~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 275 (349)
+++|++|+++++ ..+++|+.|++++| ..+++|+.|++++|.+.+..+..+.++++|+.|+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 677777777621 45677777877776 3467788888888877776667777777777776
Q ss_pred --------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 276 --------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 276 --------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
..+...+.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 111123456778888888877666777777778888888887765
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=1.4e-16 Score=167.45 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=151.4
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhh---ccCcccc---------CCcccCCCCCCCEEeecCCCCc-ccchhHHhc
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKIC---GMFKLLR---------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSN 182 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~---~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~ 182 (349)
...+++++.|.+.++.... ..+...+ .++++|. +| .+.+++|++|++++|.++ .+|..+ ++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~-~~ 162 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDI-GS 162 (968)
T ss_pred HhCCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCcccccCChHH-hc
Confidence 3467889999988876542 2223333 4444444 23 256889999999999887 688888 99
Q ss_pred CcCCcEEeccCcC-ccccchhhhccccchhhh--------------hCCCCCCeeeccCC----------CCCCCccEEE
Q 041418 183 LLNLYTLDMPFSY-IDHTVDEFWKMKKLRHLN--------------FGLSCLKSLKLANE----------SKMPWLSKIV 237 (349)
Q Consensus 183 l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~~----------~~~~~L~~L~ 237 (349)
+++|++|++++|. ...+|..++++++|++|+ +++++|+.|+++++ ..+++|+.|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 9999999999995 457899999999999997 56788888888721 5677888888
Q ss_pred EccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCC
Q 041418 238 LAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLK 299 (349)
Q Consensus 238 l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~ 299 (349)
+++| ..+++|+.|++++|.+.+..+..+..+++|+.|+ ..+.....+++|+.|++++|...+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 8877 5677888888888888777667788888888877 111222467788999998888777
Q ss_pred CCCcccCCCCCCCEEEecCCC
Q 041418 300 KMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 300 ~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+|..+..+++|+.|++++|.
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred cCChhHhcCCCCCEEECcCCC
Confidence 888888889999999998876
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=4.7e-18 Score=160.10 Aligned_cols=201 Identities=19% Similarity=0.182 Sum_probs=144.5
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhh--ccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKIC--GMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLN 185 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~--~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~ 185 (349)
..+++.+|++++..+...+ +++++++| ..+..|. +|..+..-+++-+|+||+|+|.++|.++|.+|+.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 4567888888888777653 22333332 2333333 8999999999999999999999999999999999
Q ss_pred CcEEeccCcCccccchhhhccccchhhh--------------hCCCCCCeeeccC-------------------------
Q 041418 186 LYTLDMPFSYIDHTVDEFWKMKKLRHLN--------------FGLSCLKSLKLAN------------------------- 226 (349)
Q Consensus 186 L~~L~l~~~~l~~lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~------------------------- 226 (349)
|-+|||++|.+..+|+.+.+|..|++|. -.+++|+.|.+++
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 9999999999999999999999999987 2334445554441
Q ss_pred -C--------CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc---------cccc
Q 041418 227 -E--------SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---------FWTM 279 (349)
Q Consensus 227 -~--------~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---------~~~~ 279 (349)
+ ..+++|++|++++| ....+|+.|+++.|+++..| ..+.+++.|+.|. .++.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCcc
Confidence 0 45667778888777 45667777777777765443 4555666666554 1111
Q ss_pred -----------------------ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 280 -----------------------GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 280 -----------------------~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+...+++|+.|.++.|. +-.+|.+|.-++.|+.|++..+|
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCc
Confidence 11245677788887655 77788888888888888888887
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=1.9e-15 Score=141.67 Aligned_cols=179 Identities=19% Similarity=0.261 Sum_probs=115.7
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhh--------------hC-----
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FG----- 215 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~----- 215 (349)
+..=.++++|+|++|.|+.+-.+-|..+.+|.+|.|+.|.++.+|... .+|++|+.|+ .+
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 333345666666666666555555566666666666666666665543 3366666665 22
Q ss_pred -------------------CCCCCeeecc-C------C---CCCCCccEEEEccC----------CCCCCccEEEEeecC
Q 041418 216 -------------------LSCLKSLKLA-N------E---SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTD 256 (349)
Q Consensus 216 -------------------l~~L~~L~l~-~------~---~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~ 256 (349)
|.++++|++. + + .+++.|+.|+++.| ...+.|+.|+|++|+
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 3444444444 0 0 55677777777776 567788888888888
Q ss_pred CCCCCcccccCCccccccc------------------------------cccccc-----ccccccceeeeeccCCCCCC
Q 041418 257 RMDDPMPVLETLPLLQKAD------------------------------FWTMGN-----AAMPKLECLIINPCAYLKKM 301 (349)
Q Consensus 257 l~~~~~~~l~~l~~L~~L~------------------------------~~~~~~-----~~~~~L~~L~l~~c~~l~~l 301 (349)
++..+...|..+..|+.|. .|.+++ .++++|+.|.+.+|+ ++.+
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I 407 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSI 407 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeec
Confidence 7776666665555555554 555544 248899999999987 9999
Q ss_pred Cc-ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccc
Q 041418 302 PE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPN 339 (349)
Q Consensus 302 p~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~ 339 (349)
|. .+..+++|++|++.+++ +..+++ .|.++ ++.+
T Consensus 408 ~krAfsgl~~LE~LdL~~Na---iaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNA---IASIQPNAFEPM-ELKE 443 (873)
T ss_pred chhhhccCcccceecCCCCc---ceeecccccccc-hhhh
Confidence 96 47889999999999998 455555 44444 4443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=8.2e-16 Score=138.32 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=54.8
Q ss_pred CCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 152 YPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 152 lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+|...+ ++.++.+||++.|+++++|+++ +.+.+|++||+++|.++.+|.++|+| .|+.|.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred hHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 676665 8999999999999999999999 99999999999999999999999998 777776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=3.3e-16 Score=147.78 Aligned_cols=122 Identities=25% Similarity=0.307 Sum_probs=103.5
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhh-------------hCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLN-------------FGLS 217 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~-------------~~l~ 217 (349)
+|..|-.|..|..||||+|++++.|..+ ...+++-.|+|++|+|..||..+ .+|+.|-+|+ .++.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 9999999999999999999999999999 99999999999999999999875 6788887777 6788
Q ss_pred CCCeeeccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418 218 CLKSLKLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD 275 (349)
Q Consensus 218 ~L~~L~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 275 (349)
+|++|.++++ ..+++|+.|.+++. ..+.||..++++.|++...| +.+-++++|..|+
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLN 251 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheec
Confidence 8999999854 55677788888876 56778888899988876554 5666777777766
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=1.8e-15 Score=121.64 Aligned_cols=144 Identities=24% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCC-------------Ceeec
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCL-------------KSLKL 224 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L-------------~~L~l 224 (349)
++.+.+.|-+|+|+++.+|+.| ..+.+|+.|++++|.++++|.+++.|++|++|+-.+..| +.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 3444455555555555555555 555555555555555555555555555555554222222 22222
Q ss_pred cCCCCCCCccEEEEccC-CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccC
Q 041418 225 ANESKMPWLSKIVLAEY-LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCA 296 (349)
Q Consensus 225 ~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~ 296 (349)
. ..+|.+-.+-|| ..++.|+.|.++.|.+.-.| +..+++++|+.|. +.+-+.+.+..|++|.+.+|.
T Consensus 110 t----ynnl~e~~lpgnff~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 110 T----YNNLNENSLPGNFFYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred c----ccccccccCCcchhHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 1 112222222222 33445555555665554333 3445555555554 333344556666666666655
Q ss_pred CCCCCCcccCCC
Q 041418 297 YLKKMPEHLWCI 308 (349)
Q Consensus 297 ~l~~lp~~l~~l 308 (349)
+..+|+.++++
T Consensus 185 -l~vlppel~~l 195 (264)
T KOG0617|consen 185 -LTVLPPELANL 195 (264)
T ss_pred -eeecChhhhhh
Confidence 66666655543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.1e-12 Score=139.72 Aligned_cols=57 Identities=32% Similarity=0.278 Sum_probs=44.8
Q ss_pred ccCCCCCCCEEeecCC-CCcccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh
Q 041418 155 GIENLFLLRYLKLNIP-SLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~-~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~ 213 (349)
.++.+++|++|++++| .+..+|.++ +++++|+.|++++| .++.+|..+ ++++|++|+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 4677888888888886 567888888 88888888888888 788888765 566666665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=2.8e-15 Score=134.91 Aligned_cols=167 Identities=22% Similarity=0.176 Sum_probs=117.7
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-------------hCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-------------FGLSC 218 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-------------~~l~~ 218 (349)
+|+.++.+..|+.++.++|.+.++|+++ +.+..|+.|+..+|++..+|++++.+.+|..++ -+++.
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~ 184 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKR 184 (565)
T ss_pred ccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHH
Confidence 7888888888888888888888888887 778888888887778888888877777776666 23555
Q ss_pred CCeeeccCC---------CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418 219 LKSLKLANE---------SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------ 275 (349)
Q Consensus 219 L~~L~l~~~---------~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------ 275 (349)
|++|+...+ +.+.+|..|++..| ..+..|+.|.++.|.+...+.+.+..++++..|+
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 555555411 44445555555554 4455556666666665555555555666666655
Q ss_pred -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCH
Q 041418 276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQP 321 (349)
Q Consensus 276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 321 (349)
+.+.+..-+.+|++|++++|. +..+|..+|++ .|+.|.+.|+|-
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 333333457889999999877 99999999999 999999999993
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=8.6e-14 Score=130.70 Aligned_cols=197 Identities=21% Similarity=0.185 Sum_probs=110.8
Q ss_pred CCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
.+..++|.+.++...+... ..|.++..|. +|...+...+|+.|+|.+|.|+++..+-++.++.|+
T Consensus 77 p~~t~~LdlsnNkl~~id~----~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDF----EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccccCcH----HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 3456677777766643211 1223333332 566555556666666666666655443335566666
Q ss_pred EEeccCcCccccchh-hhccccchhhh--------------------------------------hCCCCCCeeeccCC-
Q 041418 188 TLDMPFSYIDHTVDE-FWKMKKLRHLN--------------------------------------FGLSCLKSLKLANE- 227 (349)
Q Consensus 188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~--------------------------------------~~l~~L~~L~l~~~- 227 (349)
+|||+.|.+.++|.. +..-.++++|+ .++++|+.|++..+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 666666665555432 23334444444 33555555555411
Q ss_pred ---------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccccc
Q 041418 228 ---------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGN 281 (349)
Q Consensus 228 ---------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~ 281 (349)
..+++|+.|.+..| -.+.+++.|+|+.|++.......+-+++.|+.|+ ++..+.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 44555555555544 3456666677777766665556666667777666 111111
Q ss_pred -ccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 282 -AAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 282 -~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
...++|+.|++++|. +.++|++ +..+..|++|+++++.
T Consensus 313 WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc
Confidence 235778888888876 7777653 5556777777777776
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=4.5e-12 Score=124.92 Aligned_cols=157 Identities=23% Similarity=0.238 Sum_probs=83.1
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-------------hCCCCCCeeecc--
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-------------FGLSCLKSLKLA-- 225 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-------------~~l~~L~~L~l~-- 225 (349)
+|++++++.|+++.+|+.+ +.+.+|+.++...|.+..+|..+...++|+.|. +++++|++|++.
T Consensus 242 nl~~~dis~n~l~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 4555555555555555555 555555555555555555555555555555554 334444444443
Q ss_pred ---------------------------------CCCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCc
Q 041418 226 ---------------------------------NESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPM 262 (349)
Q Consensus 226 ---------------------------------~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~ 262 (349)
++...+.|+.|++.+| ....+|+.|+|++|.+...|.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 1122334444444444 445555555555555554444
Q ss_pred ccccCCccccccc-----------------------------ccccccccccccceeeeeccCCCCCC--CcccCCCCCC
Q 041418 263 PVLETLPLLQKAD-----------------------------FWTMGNAAMPKLECLIINPCAYLKKM--PEHLWCIKSL 311 (349)
Q Consensus 263 ~~l~~l~~L~~L~-----------------------------~~~~~~~~~~~L~~L~l~~c~~l~~l--p~~l~~l~~L 311 (349)
..+.+++.|+.|. ...++...++.|+.++++.|. +..+ |... .-|+|
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~-p~p~L 478 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEAL-PSPNL 478 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhC-CCccc
Confidence 4445555444444 122244566777777777554 5433 2211 12678
Q ss_pred CEEEecCCC
Q 041418 312 NKFDCWWPQ 320 (349)
Q Consensus 312 ~~L~l~~~~ 320 (349)
++|+++|++
T Consensus 479 kyLdlSGN~ 487 (1081)
T KOG0618|consen 479 KYLDLSGNT 487 (1081)
T ss_pred ceeeccCCc
Confidence 888888877
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=1.4e-11 Score=121.44 Aligned_cols=195 Identities=22% Similarity=0.215 Sum_probs=137.5
Q ss_pred CeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418 121 QLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP 192 (349)
Q Consensus 121 ~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~ 192 (349)
++++|.+.++.....+.. -..+..++.|. +|.+++++.+|++|.|.+|.+..+|.++ ..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~--it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQ--ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCch--hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhcccccccc
Confidence 477787777766421111 11222333332 8889999999999999999999999999 999999999999
Q ss_pred CcCccccchhhhccccchhhh------------------------------hCCCCCCe-eeccCC--------------
Q 041418 193 FSYIDHTVDEFWKMKKLRHLN------------------------------FGLSCLKS-LKLANE-------------- 227 (349)
Q Consensus 193 ~~~l~~lp~~i~~L~~L~~L~------------------------------~~l~~L~~-L~l~~~-------------- 227 (349)
.|.+..+|..+..++.+..+. ....++++ |++..+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~ 202 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLE 202 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchh
Confidence 999999998877666555544 11111222 332210
Q ss_pred -------------CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc
Q 041418 228 -------------SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM 279 (349)
Q Consensus 228 -------------~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~ 279 (349)
..-++|+.|+...| ....+|++++++.|+++..+ +.++.+++|+.+. ..+.
T Consensus 203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 203 VLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred hhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHH
Confidence 22234444444444 56778999999999998888 8889999999888 3333
Q ss_pred ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 280 GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 280 ~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
......+|+.|.+..|. ++.+|+....+++|+.|++..+.
T Consensus 282 ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc
Confidence 33456789999998887 89999878889999999987764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=1.7e-10 Score=115.94 Aligned_cols=151 Identities=20% Similarity=0.073 Sum_probs=88.7
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCC-------CCCCeeeccCC------
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGL-------SCLKSLKLANE------ 227 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l-------~~L~~L~l~~~------ 227 (349)
+|+.|++++|+++.+|.. +++|+.|++++|.+..+|.....|..|..-+..+ .+|+.|+++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP 358 (788)
T ss_pred hcCEEECcCCcccccccc----ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence 345555555555555532 3567777777777777665333322221111111 25666666522
Q ss_pred CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCC
Q 041418 228 SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAY 297 (349)
Q Consensus 228 ~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~ 297 (349)
...++|+.|++++| ..+.+|+.|++++|.++..+. . .++|+.|+ .+..-...+.+|+.|++++|.
T Consensus 359 ~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~Nq- 433 (788)
T PRK15387 359 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ- 433 (788)
T ss_pred CCCcccceehhhccccccCcccccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCc-
Confidence 12345666666655 233467778888877765432 1 23455554 111000223568889999877
Q ss_pred CCCCCcccCCCCCCCEEEecCCC
Q 041418 298 LKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 298 l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+..+|..++++++|+.|++++|+
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccccChHHhhccCCCeEECCCCC
Confidence 88999989999999999999998
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-11 Score=111.20 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=125.3
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccC-cCccccchh-hhccccchhhh--------------hCCC
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF-SYIDHTVDE-FWKMKKLRHLN--------------FGLS 217 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~--------------~~l~ 217 (349)
.+|+.+++||.||||+|.|+.|-+..|..+.+|..|-+-+ |.|+.+|.+ +++|..|+.|. ..++
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 5688999999999999999988777779999988887766 599999886 57888888776 4455
Q ss_pred CCCeeeccCC----------CCCCCccEEEEccC----------------------------------------------
Q 041418 218 CLKSLKLANE----------SKMPWLSKIVLAEY---------------------------------------------- 241 (349)
Q Consensus 218 ~L~~L~l~~~----------~~~~~L~~L~l~~~---------------------------------------------- 241 (349)
+|..|.++++ ..+..++.+.+..+
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence 5555554411 11111111111111
Q ss_pred --------------------------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccc-cc---ccccccc
Q 041418 242 --------------------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWT-MG---NAAMPKL 287 (349)
Q Consensus 242 --------------------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~-~~---~~~~~~L 287 (349)
..+++|+.|+|++|.++......|+.+..++.|. .+. ++ ...+..|
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 6799999999999999998888999998888887 110 11 1356789
Q ss_pred ceeeeeccCCCCCCCcccCCCCCCCEEEecCCC------HHHHHhhhh
Q 041418 288 ECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ------PELRQKLRE 329 (349)
Q Consensus 288 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~------~~~~~~l~~ 329 (349)
+.|++.+|....--|..+..+.+|..|++-.+| -.|..+|-.
T Consensus 325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred eeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence 999999988444446668889999999986654 455555433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=6.3e-10 Score=112.25 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=76.3
Q ss_pred CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA 239 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~ 239 (349)
++|++|++++|.++.+|..+ . .+|+.|++++|.+..+|..+. .+|+.|+-...+|..+.- .-+++|+.|+++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~---~l~~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPE---NLPEELRYLSVY 291 (754)
T ss_pred cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccc---ccCCCCcEEECC
Confidence 36666666666666666554 2 356666666666666666543 234444311122222211 112356666666
Q ss_pred cC-------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCccc
Q 041418 240 EY-------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHL 305 (349)
Q Consensus 240 ~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l 305 (349)
+| ...++|+.|++++|.++..+... .++|+.|. .++ ..-.++|+.|++++|. +..+|..+
T Consensus 292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP--~~l~~sL~~L~Ls~N~-L~~LP~~l 365 (754)
T PRK15370 292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLP--ASLPPELQVLDVSKNQ-ITVLPETL 365 (754)
T ss_pred CCccccCcccchhhHHHHHhcCCccccCCccc---cccceeccccCCccccCC--hhhcCcccEEECCCCC-CCcCChhh
Confidence 65 11235666666666665433211 13444444 111 1122567777777765 66677644
Q ss_pred CCCCCCCEEEecCCC
Q 041418 306 WCIKSLNKFDCWWPQ 320 (349)
Q Consensus 306 ~~l~~L~~L~l~~~~ 320 (349)
.++|+.|++++|.
T Consensus 366 --p~~L~~LdLs~N~ 378 (754)
T PRK15370 366 --PPTITTLDVSRNA 378 (754)
T ss_pred --cCCcCEEECCCCc
Confidence 2577777777765
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.04 E-value=6.3e-12 Score=101.35 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=100.4
Q ss_pred cCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccC
Q 041418 114 IEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF 193 (349)
Q Consensus 114 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~ 193 (349)
+...+++.+..+.+..+.... +|+.|..+.+|+.|++++|.++++|.++ +.++.|+.|+++-
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-----------------vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgm 88 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-----------------VPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGM 88 (264)
T ss_pred ccccchhhhhhhhcccCceee-----------------cCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecch
Confidence 344556666666666554431 7888999999999999999999999999 9999999999999
Q ss_pred cCccccchhhhccccchhhhhCCCCCCeeeccCC-CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcc
Q 041418 194 SYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE-SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMP 263 (349)
Q Consensus 194 ~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~-~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~ 263 (349)
|.+..+|.++|.++-|+.|+-...+|..=.+-++ ..++.|+.|+++.| +.+++|+.|.+..|.+...| .
T Consensus 89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp-k 167 (264)
T KOG0617|consen 89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-K 167 (264)
T ss_pred hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc-H
Confidence 9999999999999999999833333332222111 22344555555555 56677777777777665444 4
Q ss_pred cccCCccccccc
Q 041418 264 VLETLPLLQKAD 275 (349)
Q Consensus 264 ~l~~l~~L~~L~ 275 (349)
.++.+..|+.|+
T Consensus 168 eig~lt~lrelh 179 (264)
T KOG0617|consen 168 EIGDLTRLRELH 179 (264)
T ss_pred HHHHHHHHHHHh
Confidence 556666666665
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=2.5e-10 Score=116.85 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=79.3
Q ss_pred CcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHH
Q 041418 113 DIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLL 180 (349)
Q Consensus 113 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if 180 (349)
......++++++|.+..+... .......+|..++.|+ +|++|++|-+||||+++++.++.+|.++
T Consensus 538 ~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l- 614 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL- 614 (889)
T ss_pred ccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-
Confidence 344566778999999988630 0123334566666666 9999999999999999999999999999
Q ss_pred hcCcCCcEEeccCc-Cccccchhhhccccchhhh
Q 041418 181 SNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 181 ~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~ 213 (349)
++|..|.+|++..+ .+..+|..+..|++||+|.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEE
Confidence 99999999999999 6777777677799999998
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=1.4e-09 Score=109.50 Aligned_cols=150 Identities=21% Similarity=0.095 Sum_probs=82.5
Q ss_pred CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccch-------hhhhCCCCCCeeeccCC----
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLR-------HLNFGLSCLKSLKLANE---- 227 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~-------~L~~~l~~L~~L~l~~~---- 227 (349)
.++|++|++++|+++.+|.. .++|+.|++++|.+..+|....+|..|. .+-...++|+.|+++++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc
Confidence 46788888888888888753 3567777777777776665333222221 00022345666666522
Q ss_pred --CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeecc
Q 041418 228 --SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPC 295 (349)
Q Consensus 228 --~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c 295 (349)
....+|+.|++++| ....+|+.|++++|+++..|. . .++|+.|. .+..-....++|+.|++++|
T Consensus 317 Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N 392 (788)
T PRK15387 317 LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTSLPALPSGLKELIVSGN 392 (788)
T ss_pred CCCCcccccccccccCccccccccccccceEecCCCccCCCCC-C---CcccceehhhccccccCcccccccceEEecCC
Confidence 12345667777666 222478888888888776442 1 12333333 00000012245666677665
Q ss_pred CCCCCCCcccCCCCCCCEEEecCCC
Q 041418 296 AYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 296 ~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
. +..+|.. .++|+.|++++|.
T Consensus 393 ~-Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 393 R-LTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred c-ccCCCCc---ccCCCEEEccCCc
Confidence 4 5566642 2456666666654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.94 E-value=1.3e-09 Score=109.99 Aligned_cols=184 Identities=20% Similarity=0.221 Sum_probs=100.1
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM 191 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l 191 (349)
+.++.|.+.++....+ +...+.+++.|. +|..+. .+|+.|++++|.+..+|..+ . .+|++|++
T Consensus 199 ~~L~~L~Ls~N~LtsL----P~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSL----PENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-P--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcC----ChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-h--CCCCEEEC
Confidence 4566777766655432 222334454444 343332 24666666666666666555 2 35666666
Q ss_pred cCcCccccchhhhccccchhhh---hCC--------CCCCeeeccCC-------CCCCCccEEEEccC-------CCCCC
Q 041418 192 PFSYIDHTVDEFWKMKKLRHLN---FGL--------SCLKSLKLANE-------SKMPWLSKIVLAEY-------LFPHS 246 (349)
Q Consensus 192 ~~~~l~~lp~~i~~L~~L~~L~---~~l--------~~L~~L~l~~~-------~~~~~L~~L~l~~~-------~~~~~ 246 (349)
++|.+..+|..+. ++|++|+ .++ ++|+.|+++++ .-.++|+.|.+++| ...++
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~s 347 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPE 347 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCc
Confidence 6665555555432 2344443 111 12222322211 22356777777666 22357
Q ss_pred ccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCccc----CCCCCCCEEE
Q 041418 247 LTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHL----WCIKSLNKFD 315 (349)
Q Consensus 247 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~ 315 (349)
|+.|++++|++...+. .+ .++|+.|+ .++. ....+|+.|++++|. +..+|..+ +.++++..|+
T Consensus 348 L~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~--~l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPE--NLPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCH--hHHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEE
Confidence 8888888887765432 22 24555555 2211 122468888888876 77777643 3457889999
Q ss_pred ecCCC
Q 041418 316 CWWPQ 320 (349)
Q Consensus 316 l~~~~ 320 (349)
+.++|
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 99988
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-10 Score=104.62 Aligned_cols=184 Identities=16% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh---------------hCCCCCCeeecc
Q 041418 162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN---------------FGLSCLKSLKLA 225 (349)
Q Consensus 162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~---------------~~l~~L~~L~l~ 225 (349)
-..++|..|.|+.+|+..|+.+++|+.|||++|.|+.| |..+..|.+|..|- +++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 46788999999999999999999999999999999998 77888888877765 455566666554
Q ss_pred CC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCC------------cccccCCcc---
Q 041418 226 NE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP------------MPVLETLPL--- 270 (349)
Q Consensus 226 ~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~------------~~~l~~l~~--- 270 (349)
.. ..+++|..|.+..| ..+.+++.+.+..|.+..+. +-.++....
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 11 44556666665555 34555555555544421110 000000000
Q ss_pred -------------------ccccc------ccccc------cccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecC
Q 041418 271 -------------------LQKAD------FWTMG------NAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 271 -------------------L~~L~------~~~~~------~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~ 318 (349)
++.+. ..+.. ...+++|+.|++++|+ ++.+ +.++..+..+++|.+.+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCc
Confidence 00000 00000 1357889999999887 6666 44688888888888888
Q ss_pred CCHHHHHhhhhcccccccccceeeeccccc
Q 041418 319 PQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 319 ~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
+.-+++..- .|..++.+..+.+++|.+|
T Consensus 308 N~l~~v~~~--~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 308 NKLEFVSSG--MFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred chHHHHHHH--hhhccccceeeeecCCeeE
Confidence 874333322 5666666667777777765
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=2.7e-09 Score=98.01 Aligned_cols=156 Identities=21% Similarity=0.151 Sum_probs=79.7
Q ss_pred cccCCCCCCCEEeecCCCCcc-cchhHHhcCcC---CcEEeccCcCccc-----cchhhhcc-ccchhhhhCCCCCCeee
Q 041418 154 SGIENLFLLRYLKLNIPSLKS-LSSSLLSNLLN---LYTLDMPFSYIDH-----TVDEFWKM-KKLRHLNFGLSCLKSLK 223 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~-lp~~if~~l~~---L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~~~l~~L~~L~ 223 (349)
..+..+++|++|++++|.+.. .+..+ ..+.+ |++|++++|.+.. +...+..+ ++|+.| +
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L----------~ 143 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL----------V 143 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE----------E
Confidence 345556677777777776653 33333 44444 7777777775442 22223333 333333 3
Q ss_pred ccCC--------------CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCc----ccccCCccc
Q 041418 224 LANE--------------SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLL 271 (349)
Q Consensus 224 l~~~--------------~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L 271 (349)
+++. ..+++|+.|++++| ...++|+.|++++|.+.+... ..+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 3200 23345555555555 223467777777666553322 223344555
Q ss_pred cccc----ccc----cc-ccc----ccccceeeeeccCCC----CCCCcccCCCCCCCEEEecCCC
Q 041418 272 QKAD----FWT----MG-NAA----MPKLECLIINPCAYL----KKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 272 ~~L~----~~~----~~-~~~----~~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
++|+ ... .. ... .+.|+.|++++|... ..++..+..+++|+++++++|+
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 5555 000 00 011 257888888877621 1233334556778888887776
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=3.9e-09 Score=87.67 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=42.7
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY 195 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~ 195 (349)
.+..++|.|.+.++.... .+.++ .+.+|+.|++++|.|+.++ .+ ..+++|++|++++|.
T Consensus 16 ~n~~~~~~L~L~~n~I~~------------------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST------------------IENLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNR 75 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS-
T ss_pred cccccccccccccccccc------------------ccchhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCC
Confidence 344567888888776641 13344 4678999999999999886 45 889999999999999
Q ss_pred ccccchhhh-ccccchhhhhCCCCCCeeeccCC--CCCCCccEEEEccCCCCCCccEEEEeecCCCCCC---cccccCCc
Q 041418 196 IDHTVDEFW-KMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDP---MPVLETLP 269 (349)
Q Consensus 196 l~~lp~~i~-~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~---~~~l~~l~ 269 (349)
++.+++.+. .+++|++|+ ++++ ..+..+..| ..+++|+.|++.+|.+.... ...+..+|
T Consensus 76 I~~i~~~l~~~lp~L~~L~----------L~~N~I~~l~~l~~L-----~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 76 ISSISEGLDKNLPNLQELY----------LSNNKISDLNELEPL-----SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-----------TTS---SCCCCGGG-----GG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred CCccccchHHhCCcCCEEE----------CcCCcCCChHHhHHH-----HcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 998876553 455554443 3211 112222222 45677888888888765443 22445567
Q ss_pred cccccc
Q 041418 270 LLQKAD 275 (349)
Q Consensus 270 ~L~~L~ 275 (349)
+|+.|+
T Consensus 141 ~Lk~LD 146 (175)
T PF14580_consen 141 SLKVLD 146 (175)
T ss_dssp T-SEET
T ss_pred hhheeC
Confidence 777766
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=8e-09 Score=94.87 Aligned_cols=188 Identities=20% Similarity=0.161 Sum_probs=113.7
Q ss_pred CCcccCCCCCCCEEeecCCCCcc-------cchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhhhCCCCCCeee
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKS-------LSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLNFGLSCLKSLK 223 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~-------lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~l~~L~~L~ 223 (349)
++..+...+.+++++++++.+.. ++..+ .++++|+.|++++|.+. ..+..+..+.+ . ++|+.|+
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------~-~~L~~L~ 114 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGCGVLESLLR------S-SSLQELK 114 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHHHHHHHHhc------c-CcccEEE
Confidence 34456667778889988876653 23344 78889999999998655 34555554443 1 3355555
Q ss_pred ccCC--------------CCC-CCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcc----cccCCcc
Q 041418 224 LANE--------------SKM-PWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMP----VLETLPL 270 (349)
Q Consensus 224 l~~~--------------~~~-~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~----~l~~l~~ 270 (349)
+++. ..+ ++|+.|++++| ..+++|+.|++++|.+.+.... .+..+++
T Consensus 115 ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 194 (319)
T cd00116 115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194 (319)
T ss_pred eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence 5411 334 78999999988 3456899999999988754332 2344567
Q ss_pred ccccc----c--------cccccccccccceeeeeccCCCCCC-----Cccc-CCCCCCCEEEecCCCHH--HHHhhhhc
Q 041418 271 LQKAD----F--------WTMGNAAMPKLECLIINPCAYLKKM-----PEHL-WCIKSLNKFDCWWPQPE--LRQKLREF 330 (349)
Q Consensus 271 L~~L~----~--------~~~~~~~~~~L~~L~l~~c~~l~~l-----p~~l-~~l~~L~~L~l~~~~~~--~~~~l~~~ 330 (349)
|+.|+ . +......+++|+.|++++|+ +... ...+ ...+.|+.|++++|.-. -...+...
T Consensus 195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 77777 0 11112346778999998886 4421 1111 12478899999888621 12222222
Q ss_pred ccccccccceeeeccccc
Q 041418 331 EDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 331 ~~~i~~ip~i~~~~~~~~ 348 (349)
.....++..+.+.+|-++
T Consensus 274 ~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 274 LAEKESLLELDLRGNKFG 291 (319)
T ss_pred HhcCCCccEEECCCCCCc
Confidence 223355666666666553
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=8.7e-09 Score=85.61 Aligned_cols=130 Identities=24% Similarity=0.210 Sum_probs=37.5
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHh-cCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCcc
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLS-NLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLS 234 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~ 234 (349)
+.+..+++.|+|++|.|+.+. .+ + .+.+|+.|++++|.++.++. +..++ +|++|+++ -..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~~-l~~L~----------~L~~L~L~----~N~I~ 77 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NL-GATLDKLEVLDLSNNQITKLEG-LPGLP----------RLKTLDLS----NNRIS 77 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S--TT-----T----------T--EEE------SS---
T ss_pred ccccccccccccccccccccc-ch-hhhhcCCCEEECCCCCCccccC-ccChh----------hhhhcccC----CCCCC
Confidence 445557899999999999884 45 6 68999999999999988763 44333 33333332 11111
Q ss_pred EEEEccC-CCCCCccEEEEeecCCCCC-CcccccCCcccccccccccccccccccceeeeeccCCCCCC---CcccCCCC
Q 041418 235 KIVLAEY-LFPHSLTHLSFSNTDRMDD-PMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM---PEHLWCIK 309 (349)
Q Consensus 235 ~L~l~~~-~~~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l---p~~l~~l~ 309 (349)
.+. .+. ..+++|+.|.+++|++... ....++. +++|+.|++.+|+-...- ..-+..+|
T Consensus 78 ~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~----------------l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 78 SIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSS----------------LPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-----------------TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred ccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHc----------------CCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 110 000 2468899999999987642 2344444 445555555554433211 22244555
Q ss_pred CCCEEEecCC
Q 041418 310 SLNKFDCWWP 319 (349)
Q Consensus 310 ~L~~L~l~~~ 319 (349)
+|+.||-...
T Consensus 141 ~Lk~LD~~~V 150 (175)
T PF14580_consen 141 SLKVLDGQDV 150 (175)
T ss_dssp T-SEETTEET
T ss_pred hhheeCCEEc
Confidence 6666655443
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.6e-08 Score=92.77 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=89.3
Q ss_pred ccCCCCCCCEEeecCCCCcccc--hhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeecc--C--C-
Q 041418 155 GIENLFLLRYLKLNIPSLKSLS--SSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLA--N--E- 227 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp--~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~--~--~- 227 (349)
....+++++.|||+.|-+...- ..+...|++|+.|+++.|.+.....+... ..+.+|+.|.++ | .
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--------~~l~~lK~L~l~~CGls~k 212 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--------LLLSHLKQLVLNSCGLSWK 212 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--------hhhhhhheEEeccCCCCHH
Confidence 4567888888888888665322 12226788888888888855433222100 123344444443 0 0
Q ss_pred ------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------cc--cc--
Q 041418 228 ------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FW--TM-- 279 (349)
Q Consensus 228 ------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~--~~-- 279 (349)
..+|+|+.|++.+| ..++.|+.|+|++|++...+ ....+.+|+|..|. ++ +.
T Consensus 213 ~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~ 292 (505)
T KOG3207|consen 213 DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE 292 (505)
T ss_pred HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc
Confidence 45667777776666 45677788888887765433 34556666666665 10 00
Q ss_pred ---ccccccccceeeeeccCCCCCCCc--ccCCCCCCCEEEecCCC
Q 041418 280 ---GNAAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 280 ---~~~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~ 320 (349)
....|++|++|+++.|+ +...+. .+..+++|+.|.+..++
T Consensus 293 s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccc
Confidence 01347778888777776 433332 13445555665554443
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=7.8e-08 Score=65.64 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh
Q 041418 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE 202 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~ 202 (349)
++|++|++++|+++.+|+..|.++++|++|++++|.++.+|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~ 43 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD 43 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence 4688999999999999987778899999999998888888764
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=1.6e-08 Score=95.61 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=98.7
Q ss_pred CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL 238 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l 238 (349)
+..-...|++.|++.++|..+ +.+..|+.+.+..|.+..+|..+++|..|.+|+-....|+.|... ...--|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEE
Confidence 334445666666666666666 666666666666666666666666666666665333333333220 00012344444
Q ss_pred ccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCC
Q 041418 239 AEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMP 302 (349)
Q Consensus 239 ~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp 302 (349)
+.| +....|..|+.+.|.+...+ ..++.+.+|+.|. ..+.+...+ .|..|+++.|+ +..||
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iP 227 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLP 227 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecc
Confidence 443 45667778888888765444 5667777777666 333333433 38888998655 99999
Q ss_pred cccCCCCCCCEEEecCCC
Q 041418 303 EHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 303 ~~l~~l~~L~~L~l~~~~ 320 (349)
..+..|+.|++|.+.+||
T Consensus 228 v~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhhheeeeeccCC
Confidence 999999999999999998
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.1e-07 Score=90.25 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCc-CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCC-CCCC
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLL-NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANES-KMPW 232 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~-~~~~ 232 (349)
.+..++.++.|++.+|.++++|+.. +.+. +|+.|++++|.+..+|..++.+++|+.|+-.-.++..+.-. . ..+.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~~ 187 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLSN 187 (394)
T ss_pred hhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh--hhhhhh
Confidence 3444566777777777777777666 5563 77777777777777766666666666655111111111110 1 4556
Q ss_pred ccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccC
Q 041418 233 LSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCA 296 (349)
Q Consensus 233 L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~ 296 (349)
|+.|.++++ ..+.+|+.|.+++|.... .+..+.++.++..+. ......+.+++++.|++++|.
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 666666666 134458888888885332 224455555555554 112333567889999999877
Q ss_pred CCCCCCcccCCCCCCCEEEecCCC
Q 041418 297 YLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 297 ~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+..++. ++.+.+|+.|+++++.
T Consensus 267 -i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 267 -ISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred -cccccc-ccccCccCEEeccCcc
Confidence 888887 8889999999998865
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=3e-07 Score=57.99 Aligned_cols=41 Identities=32% Similarity=0.292 Sum_probs=36.0
Q ss_pred CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD 201 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~ 201 (349)
++|++|++++|+|+.+|+.+ ++|++|++|++++|.++.+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999999988 999999999999999988764
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=3.3e-08 Score=86.74 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=37.4
Q ss_pred CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccc
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMK 207 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~ 207 (349)
-..|..+|||+|.|+.+.+++ .-++.++.|+++.|.+..+-. +..|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~ 329 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELP 329 (490)
T ss_pred Hhhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcc
Confidence 356888999999999999888 888999999999998876643 44333
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=4.4e-08 Score=92.65 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=53.6
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+|..++++..|.+|+++.|.++.+|..+ +.|+ |+.|-+++|+++.+|+.++.+..|.+|+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHHHhh
Confidence 8899999999999999999999999988 7665 8999999999999999999888888888
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.6e-07 Score=86.33 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=103.7
Q ss_pred CCCCCCCEEeecCCCCcccch--hHHhcCcCCcEEeccCcCcccc---chhhhccccchhhhhCCCCCCeeeccCC----
Q 041418 157 ENLFLLRYLKLNIPSLKSLSS--SLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLNFGLSCLKSLKLANE---- 227 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~~lp~--~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~~~l~~L~~L~l~~~---- 227 (349)
.++++|+...|.++.+...+. .. ..+++++.|||+.|-+... -.-...|++|+.| +++.+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L----------Nls~Nrl~~ 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL----------NLSSNRLSN 186 (505)
T ss_pred hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhc----------ccccccccC
Confidence 568889999999998887774 55 7899999999999954443 2223455555444 44411
Q ss_pred -------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc--cc
Q 041418 228 -------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT--MG 280 (349)
Q Consensus 228 -------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~--~~ 280 (349)
..+++|+.|.+++| ..+++|+.|.|..|............+..|+.|+ ... ..
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 45678999999988 6788999999998852211112223345555555 111 12
Q ss_pred cccccccceeeeeccCCCCCC--Ccc-----cCCCCCCCEEEecCCC
Q 041418 281 NAAMPKLECLIINPCAYLKKM--PEH-----LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 281 ~~~~~~L~~L~l~~c~~l~~l--p~~-----l~~l~~L~~L~l~~~~ 320 (349)
.+.||.|..|.++.|. +.++ |+. ...+++|++|++..++
T Consensus 267 ~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 3678999999999876 5554 432 3568999999999988
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.6e-07 Score=82.53 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=29.8
Q ss_pred ccccccceeeeeccCCCCCCCc--ccCCCCCCCEEEecCCC
Q 041418 282 AAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~ 320 (349)
+.+-+|..|++++|+ +..+.. ++|++|.|+.+.+.++|
T Consensus 371 ~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 456778888998876 655543 58899999999999998
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=8.6e-07 Score=60.41 Aligned_cols=60 Identities=28% Similarity=0.317 Sum_probs=49.3
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCC-cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI 196 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l 196 (349)
++++.+.+.++.... +| ..|.++++|++|++++|.++.+|+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~-----------------i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-----------------IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-----------------ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-----------------cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356777777664431 33 5788999999999999999999998889999999999999864
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=3.4e-06 Score=84.57 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc
Q 041418 162 LRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK 207 (349)
Q Consensus 162 L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~ 207 (349)
++.|+|++|.+. .+|..+ +++++|+.|+|++|.+. .+|..++.++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~ 466 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSIT 466 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 667888888876 678777 88888888888888554 6777665444
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.11 E-value=4.1e-06 Score=79.50 Aligned_cols=151 Identities=26% Similarity=0.295 Sum_probs=114.3
Q ss_pred EEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccc-cchhhhhCCCCCCee--eccCCCCCCCccEEEEcc
Q 041418 164 YLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMK-KLRHLNFGLSCLKSL--KLANESKMPWLSKIVLAE 240 (349)
Q Consensus 164 ~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~-~L~~L~~~l~~L~~L--~l~~~~~~~~L~~L~l~~ 240 (349)
.+++..+.+..-+..+ ..++.+..|++.+|.+.++|...+.+. +|+.|+-.-.+++.+ .+ ..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~---~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL---RNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh---hccccccccccCC
Confidence 6888888886666667 788999999999999999999888885 888888444555555 44 6788999999998
Q ss_pred C--------C-CCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc
Q 041418 241 Y--------L-FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH 304 (349)
Q Consensus 241 ~--------~-~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 304 (349)
| . ..++|+.|++++|.+...+.. .+...+|++|. ..+.....+.++..+.+.++. +..+|..
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~ 250 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES 250 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch
Confidence 8 2 788999999999998766532 23344466555 122223556777788877665 6776778
Q ss_pred cCCCCCCCEEEecCCC
Q 041418 305 LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 305 l~~l~~L~~L~l~~~~ 320 (349)
++.+++++.|+++++.
T Consensus 251 ~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 251 IGNLSNLETLDLSNNQ 266 (394)
T ss_pred hccccccceecccccc
Confidence 8999999999999987
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=8.3e-07 Score=79.51 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=84.2
Q ss_pred cccCCCCCCCEEeecCCCCc-c----cchhHHhcCcCCcEEeccCcCccccchh-hhc-cccchhhh--hCCCCCCeeec
Q 041418 154 SGIENLFLLRYLKLNIPSLK-S----LSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWK-MKKLRHLN--FGLSCLKSLKL 224 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~-~----lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~-L~~L~~L~--~~l~~L~~L~l 224 (349)
+++...++|++|+||.|.+. + +-.-+ ..+..|+.|.|.+|.++..-.. +++ |..|.... +.-++|+++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 45566778889999988665 1 22234 7788888888888877654322 111 11111111 33344555544
Q ss_pred cCC--------------CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCc----ccccCCcccc
Q 041418 225 ANE--------------SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLLQ 272 (349)
Q Consensus 225 ~~~--------------~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~ 272 (349)
..+ ...+.|+.+.+..| ..+++|+.|+|..|.++...- ..+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 411 23344555554444 345555555555554443221 1223334444
Q ss_pred ccc---cccc----------ccccccccceeeeeccCCCC----CCCcccCCCCCCCEEEecCCC
Q 041418 273 KAD---FWTM----------GNAAMPKLECLIINPCAYLK----KMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 273 ~L~---~~~~----------~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.|. .... -....|+|+.|.+.+|..-. .+-..+...|.|..|++++|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 443 0000 00236777777777765211 112234557778888887776
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.5e-07 Score=82.56 Aligned_cols=143 Identities=24% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCCEEeecCCCCcc-cchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhh----------------hCCCCCCee
Q 041418 161 LLRYLKLNIPSLKS-LSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLN----------------FGLSCLKSL 222 (349)
Q Consensus 161 ~L~~L~l~~~~l~~-lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~----------------~~l~~L~~L 222 (349)
.|++|||++..|+. --..+++.+.+|+.|.+.++.+. .+-..|.+-.+|+.|+ ..++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36677777766651 11233466666777777666333 3344455555555555 455666666
Q ss_pred ecc--C---C-------CCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCCccccccccc
Q 041418 223 KLA--N---E-------SKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFW 277 (349)
Q Consensus 223 ~l~--~---~-------~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~ 277 (349)
+++ + + .--++|..|+++|+ ..+++|..|||+.|...... .+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--~~------------ 331 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--CF------------ 331 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--HH------------
Confidence 655 0 1 22356677777776 55677777777776432211 11
Q ss_pred ccccccccccceeeeeccCCCCCCCc---ccCCCCCCCEEEecCCC
Q 041418 278 TMGNAAMPKLECLIINPCAYLKKMPE---HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~ 320 (349)
...-.|+.|++|.++.|-. -+|. .+...|+|.+|++.+|-
T Consensus 332 -~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 -QEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred -HHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 1124678899999998853 3343 36788999999999975
No 41
>PLN03150 hypothetical protein; Provisional
Probab=97.98 E-value=1.8e-05 Score=79.45 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=48.2
Q ss_pred CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc
Q 041418 152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK 207 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~ 207 (349)
+|..++++++|+.|+|++|.+. .+|..+ +.+++|++|+|++|.+. .+|..+++++
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 7888999999999999999997 789888 99999999999999655 6788776544
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=4.4e-06 Score=74.98 Aligned_cols=219 Identities=15% Similarity=0.098 Sum_probs=121.3
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCC----CCcccchhH------HhcCcC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIP----SLKSLSSSL------LSNLLN 185 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~----~l~~lp~~i------f~~l~~ 185 (349)
......+.-+.+.++......... +-+.+.+.++|+..++++- ...++|+.+ +...++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~------------i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARA------------IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHH------------HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 455666777777776654111111 2234566678888888863 123566543 245678
Q ss_pred CcEEeccCcCcc-ccchh----hhccccchhhh-----------hCC-CCCCeeeccC-CCCCCCccEEEEccC------
Q 041418 186 LYTLDMPFSYID-HTVDE----FWKMKKLRHLN-----------FGL-SCLKSLKLAN-ESKMPWLSKIVLAEY------ 241 (349)
Q Consensus 186 L~~L~l~~~~l~-~lp~~----i~~L~~L~~L~-----------~~l-~~L~~L~l~~-~~~~~~L~~L~l~~~------ 241 (349)
|++||||+|-++ .-++. +.+.+.|++|+ +.+ ..|+.|.... -...+.|+.+..+.|
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 999999999333 22333 34556666665 000 0111111100 056678888887777
Q ss_pred --------CCCCCccEEEEeecCCCCCCc----ccccCCccccccc------------ccccccccccccceeeeeccCC
Q 041418 242 --------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLLQKAD------------FWTMGNAAMPKLECLIINPCAY 297 (349)
Q Consensus 242 --------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~------------~~~~~~~~~~~L~~L~l~~c~~ 297 (349)
...+.|+.+.+..|.+..... ..+..+++|+.|+ ........+++|+.|++++|.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl- 252 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL- 252 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-
Confidence 456788888888888765443 3556778888777 011111346778888888876
Q ss_pred CCCCC-----cc-cCCCCCCCEEEecCCCHHHHHhh--hhcccccccccceeeecccc
Q 041418 298 LKKMP-----EH-LWCIKSLNKFDCWWPQPELRQKL--REFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 298 l~~lp-----~~-l~~l~~L~~L~l~~~~~~~~~~l--~~~~~~i~~ip~i~~~~~~~ 347 (349)
++.=- .. -...|+|+.|.+.+|....-... .......+++-.+.+++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33211 01 12367888888888763221111 11222244455555555554
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=4e-05 Score=71.69 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=25.9
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc-Cccccchh
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDE 202 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~ 202 (349)
.+.++++|++++|.++.+|. + ..+|+.|.+++| .+..+|..
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~ 91 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGS 91 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCch
Confidence 34667777777777777662 2 345777777776 66666653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=7.3e-06 Score=78.34 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=40.1
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
.++.+++|.+|++.+|.|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred ccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhhe
Confidence 3667778888888888887776545 778888888888887777753 55555454444
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.2e-05 Score=48.69 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
++|++|++++|. +..+|+.++++++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 579999999987 88999889999999999999998
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.3e-06 Score=74.32 Aligned_cols=131 Identities=19% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCcEEeccCcCccc--cchhhhccccchhhhhCCCCCCeeeccCC-----CCCCCccEEEEccC------------CCCC
Q 041418 185 NLYTLDMPFSYIDH--TVDEFWKMKKLRHLNFGLSCLKSLKLANE-----SKMPWLSKIVLAEY------------LFPH 245 (349)
Q Consensus 185 ~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~~-----~~~~~L~~L~l~~~------------~~~~ 245 (349)
.||+|||+...++. +-.-++.+.+|+.| +|+-+.+.+. ..-.+|++|+++++ .+++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~l-----SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNL-----SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhc-----cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 48888888875543 22223444555444 3444433322 55678999999887 6789
Q ss_pred CccEEEEeecCCCCCCcccccC--Cccccccc-----------ccccccccccccceeeeeccCCCCC-CCcccCCCCCC
Q 041418 246 SLTHLSFSNTDRMDDPMPVLET--LPLLQKAD-----------FWTMGNAAMPKLECLIINPCAYLKK-MPEHLWCIKSL 311 (349)
Q Consensus 246 ~L~~L~L~~~~l~~~~~~~l~~--l~~L~~L~-----------~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L 311 (349)
.|..|+++||.+..+.....-. -++|+.|+ ....-....|+|..|++++|..++. .-..+.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 9999999999877654332211 14555555 0001113578999999999886654 12246789999
Q ss_pred CEEEecCCC
Q 041418 312 NKFDCWWPQ 320 (349)
Q Consensus 312 ~~L~l~~~~ 320 (349)
++|.++.|-
T Consensus 341 ~~lSlsRCY 349 (419)
T KOG2120|consen 341 QHLSLSRCY 349 (419)
T ss_pred eeeehhhhc
Confidence 999999986
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=0.0001 Score=74.33 Aligned_cols=108 Identities=21% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc--cccc-------ccccccccc
Q 041418 229 KMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--FWTM-------GNAAMPKLE 288 (349)
Q Consensus 229 ~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--~~~~-------~~~~~~~L~ 288 (349)
.+|+|+.|.+.|. .++++|..||+++++++.. ..++.++||+.|. ...+ +.-.+.+|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3455555555553 6888999999999887643 5777888888887 1111 123578999
Q ss_pred eeeeeccCCCCCC--Cc----ccCCCCCCCEEEecCCC--HHHHHhhhhccccccccc
Q 041418 289 CLIINPCAYLKKM--PE----HLWCIKSLNKFDCWWPQ--PELRQKLREFEDKEQQIP 338 (349)
Q Consensus 289 ~L~l~~c~~l~~l--p~----~l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~i~~ip 338 (349)
.||+|.-.....- .. .-..+|+|+.||.++.. +++.+.+...+.+++.|.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 9999975533221 11 12348999999999865 666676666666666555
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=4.9e-05 Score=76.60 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 159 LFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 159 l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
||.|+.|.+++-.+. ++- .++.+++||..||+|+++++.+ .++++|++|+.|.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred CcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 566677776664432 111 2225667777777777766666 5577777777663
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00012 Score=64.66 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=90.3
Q ss_pred CCCCCCCEEeecCCCCc----ccchhHHhcCcCCcEEeccCc--CccccchhhhccccchhhhhCCCCCCeeeccCC---
Q 041418 157 ENLFLLRYLKLNIPSLK----SLSSSLLSNLLNLYTLDMPFS--YIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE--- 227 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~----~lp~~if~~l~~L~~L~l~~~--~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~--- 227 (349)
.+|++|++|+++.|.+. .+| ..+.+|++|-|.++ ..+..-..+..+++++.|.-...+++.+.+.++
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e 169 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE 169 (418)
T ss_pred hcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence 45566666666665443 232 13445666666555 223333334455555555433444444444422
Q ss_pred CCCCCccEEEEccC------------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------cccc--cccccc
Q 041418 228 SKMPWLSKIVLAEY------------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FWTM--GNAAMP 285 (349)
Q Consensus 228 ~~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~~~--~~~~~~ 285 (349)
..-+.++++...+| ..++++..+-+..|.+.... -.....+|.+..|. +|.. ....|+
T Consensus 170 ~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 170 DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP 249 (418)
T ss_pred ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence 33345666666666 56888888888888665422 23344445444444 4421 235688
Q ss_pred ccceeeeeccCCCCCCCc------ccCCCCCCCEEEecCC
Q 041418 286 KLECLIINPCAYLKKMPE------HLWCIKSLNKFDCWWP 319 (349)
Q Consensus 286 ~L~~L~l~~c~~l~~lp~------~l~~l~~L~~L~l~~~ 319 (349)
.|..|.+++++....+-. -++.+++++.|+=+..
T Consensus 250 ~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI 289 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI 289 (418)
T ss_pred hhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence 999999998886665543 2577888888875543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=6.7e-06 Score=80.34 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEE
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIV 237 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~ 237 (349)
.|...+.+.|.++.+..++ .-++.|+.|||++|++..+- .+..+++|++|+ ..++.+-.+.. ..|. |+.|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~---~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM---VGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccch---hhhh-heeee
Confidence 3666777778887777777 77888888888888777775 577788888887 34444444443 3444 88888
Q ss_pred EccC--------CCCCCccEEEEeecCCCC
Q 041418 238 LAEY--------LFPHSLTHLSFSNTDRMD 259 (349)
Q Consensus 238 l~~~--------~~~~~L~~L~L~~~~l~~ 259 (349)
+++| .++.+|+.||+++|-+.+
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence 8887 678888889998887654
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=4.5e-05 Score=72.96 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI 196 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l 196 (349)
..+.++..+.+.++.... +...+..+++|++|++++|.|+.+.. + ..++.|+.|++++|.+
T Consensus 92 ~~~~~l~~l~l~~n~i~~-----------------i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-----------------IENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLI 152 (414)
T ss_pred ccccceeeeeccccchhh-----------------cccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcc
Confidence 345566666666655542 11225667777777777777777643 3 6677777777777777
Q ss_pred cccchhhhccccchhhh
Q 041418 197 DHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 197 ~~lp~~i~~L~~L~~L~ 213 (349)
..++. +..+++|+.++
T Consensus 153 ~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 153 SDISG-LESLKSLKLLD 168 (414)
T ss_pred hhccC-Cccchhhhccc
Confidence 66653 44455444443
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.00067 Score=56.82 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEE-Ec
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIV-LA 239 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~-l~ 239 (349)
+...+||++|.+..++. |..++.|.+|.+.+|.|..+-+.+..+ +++|+.|.+.++ ++++|. +.
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~---------~p~l~~L~LtnN----si~~l~dl~ 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTF---------LPNLKTLILTNN----SIQELGDLD 107 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhh---------ccccceEEecCc----chhhhhhcc
Confidence 34556777776666543 366677777777777777665544321 222333322100 111110 00
Q ss_pred cCCCCCCccEEEEeecCCCCC---CcccccCCccccccc
Q 041418 240 EYLFPHSLTHLSFSNTDRMDD---PMPVLETLPLLQKAD 275 (349)
Q Consensus 240 ~~~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~ 275 (349)
....++.|++|.+-+|..+.. -.-.+..+|+|+.|+
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence 114455666666666655432 234566677777777
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.86 E-value=0.00042 Score=64.00 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCCCccEEEEccC------------CCCCCccEEEEeecCCCCCC-cccc-cCCccccccc----cccccc--------
Q 041418 228 SKMPWLSKIVLAEY------------LFPHSLTHLSFSNTDRMDDP-MPVL-ETLPLLQKAD----FWTMGN-------- 281 (349)
Q Consensus 228 ~~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~l~~~~-~~~l-~~l~~L~~L~----~~~~~~-------- 281 (349)
.++++|+.+.+.+| .+.+.|+.+++..|....+. +..+ .+++.|+.|. +...+.
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 55677777777776 55667777777776644332 2222 2456676666 111111
Q ss_pred -ccccccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeee
Q 041418 282 -AAMPKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQST 343 (349)
Q Consensus 282 -~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~ 343 (349)
.++..|+.+.+++|+.+.+-- ..+...++|+.+++.+|..-+.+.+.+ ...|+|+++++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~---~~~~lp~i~v~ 457 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR---FATHLPNIKVH 457 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH---HHhhCccceeh
Confidence 346678888888888554321 235567888888888887433333322 13345555443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.85 E-value=0.0005 Score=54.10 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH 198 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~ 198 (349)
.++....+.++.... +|+.+. ..+.++.|++++|.++++|.++ ..++.|+.|+++.|.+..
T Consensus 53 ~el~~i~ls~N~fk~-----------------fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-----------------FPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccchhhh-----------------CCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCcccc
Confidence 467777888877653 333332 3346788899999999999996 999999999999998888
Q ss_pred cchhhhccccchhhh
Q 041418 199 TVDEFWKMKKLRHLN 213 (349)
Q Consensus 199 lp~~i~~L~~L~~L~ 213 (349)
.|..+..|.+|-+|+
T Consensus 115 ~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 115 EPRVIAPLIKLDMLD 129 (177)
T ss_pred chHHHHHHHhHHHhc
Confidence 888888788777776
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.001 Score=59.07 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=30.7
Q ss_pred CCCCCEEeecCCCCcccch--hHHhcCcCCcEEeccCcCcc
Q 041418 159 LFLLRYLKLNIPSLKSLSS--SLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~--~if~~l~~L~~L~l~~~~l~ 197 (349)
.+.++.+||.+|.|+...+ .|+.+|+.|++|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 4678999999999985432 34478999999999999554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.66 E-value=0.0048 Score=58.00 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=76.9
Q ss_pred hcCcCCcEEeccCcCccccchhhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC----CCCCCccEEEEeec
Q 041418 181 SNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY----LFPHSLTHLSFSNT 255 (349)
Q Consensus 181 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~----~~~~~L~~L~L~~~ 255 (349)
..+.++..|++++|.++.+|. + -.+|+.|. .++.+|..+.- .-+++|+.|.+++| ..+.+|+.|++..+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~---~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n 122 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPG---SIPEGLEKLTVCHCPEISGLPESVRSLEIKGS 122 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCc---hhhhhhhheEccCcccccccccccceEEeCCC
Confidence 457899999999999999983 2 12455555 44455544431 12457788888776 44567888888765
Q ss_pred CCCCCCcccccCC-cccccccc--------cccccccc-cccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418 256 DRMDDPMPVLETL-PLLQKADF--------WTMGNAAM-PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP 319 (349)
Q Consensus 256 ~l~~~~~~~l~~l-~~L~~L~~--------~~~~~~~~-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 319 (349)
... .+..+ ++|+.|.- +... ..+ ++|+.|++++|..+ .+|..+. .+|+.|+++.+
T Consensus 123 ~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 123 ATD-----SIKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCc-----ccccCcchHhheeccccccccccccc-cccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 432 22333 24555541 1001 123 57999999999844 4565443 58999998765
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00017 Score=63.24 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=17.0
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
+|+.|.+|.||-|+|+.+-+ |..+++|+.|+|+.|.|.
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE 76 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc
Confidence 34444444444444444422 244444444444444433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0037 Score=52.49 Aligned_cols=80 Identities=25% Similarity=0.214 Sum_probs=56.8
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWL 233 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L 233 (349)
..+..++.|.+|.+++|.|+.+.+.+-..+++|.+|.+.+|++.++-+ +..| ..||.|
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pL---------------------a~~p~L 115 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPL---------------------ASCPKL 115 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchh---------------------ccCCcc
Confidence 346678899999999999999988873457789999999998776532 1111 345555
Q ss_pred cEEEEccC-------------CCCCCccEEEEeec
Q 041418 234 SKIVLAEY-------------LFPHSLTHLSFSNT 255 (349)
Q Consensus 234 ~~L~l~~~-------------~~~~~L~~L~L~~~ 255 (349)
++|.+-|| ..+++|+.||...-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55555555 45777787777653
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.56 E-value=0.00092 Score=35.17 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=8.3
Q ss_pred CCEEeecCCCCcccchh
Q 041418 162 LRYLKLNIPSLKSLSSS 178 (349)
Q Consensus 162 L~~L~l~~~~l~~lp~~ 178 (349)
|++|++++|+++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555544444444
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.50 E-value=5.5e-05 Score=74.20 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD 201 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~ 201 (349)
+-.++.-++.|+.|+|++|+++..- .+ ..+++|++|||+.|.+..+|.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~ 226 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQ 226 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhccccc
Confidence 4456777889999999999998875 56 899999999999998888875
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.34 E-value=0.0011 Score=34.83 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.6
Q ss_pred CCcEEeccCcCccccchhhhcc
Q 041418 185 NLYTLDMPFSYIDHTVDEFWKM 206 (349)
Q Consensus 185 ~L~~L~l~~~~l~~lp~~i~~L 206 (349)
+|++||+++|.++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999987653
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.15 E-value=0.0042 Score=54.55 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=36.1
Q ss_pred CCcccCCCCCCCEEeecCCCCc-ccch----hHHhcCcCCcEEeccCcCccccc
Q 041418 152 YPSGIENLFLLRYLKLNIPSLK-SLSS----SLLSNLLNLYTLDMPFSYIDHTV 200 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~-~lp~----~if~~l~~L~~L~l~~~~l~~lp 200 (349)
+.+.+-++++|+..+||.|.+. +.|+ -| ++-++|.+|.+++|.++.+.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i-s~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLI-SSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHH-hcCCCceeEEeecCCCCccc
Confidence 3456778899999999998765 3443 34 77888999999999777653
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.84 E-value=0.004 Score=57.70 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCCccEEEEccC------------CCCCCccEEEEeecC-CCCCCccccc-CCccccccc----------ccccccccc
Q 041418 229 KMPWLSKIVLAEY------------LFPHSLTHLSFSNTD-RMDDPMPVLE-TLPLLQKAD----------FWTMGNAAM 284 (349)
Q Consensus 229 ~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~----------~~~~~~~~~ 284 (349)
.+..|+.|..+++ .+..+|+.|.+..|+ ++......++ +.+.|+.++ +...-....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3555666665555 566778888887775 3332233332 346666666 111112356
Q ss_pred cccceeeeeccCCCCCC-----CcccCCCCCCCEEEecCCC
Q 041418 285 PKLECLIINPCAYLKKM-----PEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~ 320 (349)
+.|+.+.++.|..+..- ..+-..+..|+.+.+++||
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 88999999988755443 3333456779999999999
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.51 E-value=0.012 Score=32.16 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=14.6
Q ss_pred CCCCCEEeecCCCCcccchhHH
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLL 180 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if 180 (349)
|++|++|++++|.++.+|..+|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777776654
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.51 E-value=0.012 Score=32.16 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=14.6
Q ss_pred CCCCCEEeecCCCCcccchhHH
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLL 180 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if 180 (349)
|++|++|++++|.++.+|..+|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777776654
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.48 E-value=0.0094 Score=29.10 Aligned_cols=16 Identities=44% Similarity=0.418 Sum_probs=6.4
Q ss_pred CCCEEeecCCCCcccc
Q 041418 161 LLRYLKLNIPSLKSLS 176 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp 176 (349)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.012 Score=28.70 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=11.6
Q ss_pred cCCcEEeccCcCccccc
Q 041418 184 LNLYTLDMPFSYIDHTV 200 (349)
Q Consensus 184 ~~L~~L~l~~~~l~~lp 200 (349)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999988887
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.20 E-value=0.0062 Score=48.10 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.7
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhh
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL 212 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 212 (349)
.+....+|+..++++|.+..+|+.+-.+.+.+++|++++|.+.++|.++..++.|+.|
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3455667888999999999999887345668999999999999999987655544444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.0043 Score=54.64 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=32.5
Q ss_pred CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+.+.+.|+..||.++.+.- . .+++.|++|.|+-|.++.+-+ +..+++|+.|+
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c-~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElY 69 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-C-EKMPLLEVLSLSVNKISSLAP-LQRCTRLKELY 69 (388)
T ss_pred HHHhhhhcccCCCccHHHH-H-HhcccceeEEeeccccccchh-HHHHHHHHHHH
Confidence 4455666666666665521 2 467777777777777766643 66666666666
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.30 E-value=0.03 Score=48.87 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=32.6
Q ss_pred cCCCCCCCEEeecCC--CCc-ccchhHHhcCcCCcEEeccCcCccc
Q 041418 156 IENLFLLRYLKLNIP--SLK-SLSSSLLSNLLNLYTLDMPFSYIDH 198 (349)
Q Consensus 156 i~~l~~L~~L~l~~~--~l~-~lp~~if~~l~~L~~L~l~~~~l~~ 198 (349)
+-.|++|++|+++.| .+. .++..+ .++++|++|++++|.+..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccc
Confidence 445778999999998 554 566555 677999999999997664
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.95 E-value=0.067 Score=47.21 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=25.9
Q ss_pred cccccceeeeeccCCCCC----CCcccCCCCCCCEEEecCCC
Q 041418 283 AMPKLECLIINPCAYLKK----MPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~ 320 (349)
...+|+.|++.+|..... +...+...+.|++|.+.+|=
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 357899999999873221 11234556779999999984
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.92 E-value=0.033 Score=48.66 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc----ccCCCCCCCEEEecC
Q 041418 243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE----HLWCIKSLNKFDCWW 318 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~ 318 (349)
..++|++|++++|.+.. +..+..+ ..+.+|..|++.+|.-.. +-. -+..+++|++|+-.+
T Consensus 89 ~~P~l~~l~ls~Nki~~--lstl~pl-------------~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKD--LSTLRPL-------------KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hCCceeEEeecCCcccc--ccccchh-------------hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 34777777777777542 2222221 234455556666655222 221 134456666665554
Q ss_pred C
Q 041418 319 P 319 (349)
Q Consensus 319 ~ 319 (349)
+
T Consensus 153 v 153 (260)
T KOG2739|consen 153 V 153 (260)
T ss_pred c
Confidence 3
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.82 E-value=0.085 Score=41.09 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=18.9
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD 201 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~ 201 (349)
|.+.++|+.+.+.. .+..++...|..+.+|+.+.+.++ +..++.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~ 51 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD 51 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce
Confidence 44555566666653 355555555556656666666553 444433
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.51 E-value=0.07 Score=29.03 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred CcCCcEEeccCcCccccchhhh
Q 041418 183 LLNLYTLDMPFSYIDHTVDEFW 204 (349)
Q Consensus 183 l~~L~~L~l~~~~l~~lp~~i~ 204 (349)
+++|++|++++|.++.+|.+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5789999999999999998753
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.51 E-value=0.07 Score=29.03 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.3
Q ss_pred CcCCcEEeccCcCccccchhhh
Q 041418 183 LLNLYTLDMPFSYIDHTVDEFW 204 (349)
Q Consensus 183 l~~L~~L~l~~~~l~~lp~~i~ 204 (349)
+++|++|++++|.++.+|.+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5789999999999999998753
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=0.02 Score=48.11 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.4
Q ss_pred ccccccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCC
Q 041418 282 AAMPKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 320 (349)
+..++|+.|++++|+.+++-- .++..+++|+.|.+.+.|
T Consensus 148 ~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 148 GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 357999999999999887653 257889999999999977
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.14 E-value=0.096 Score=50.65 Aligned_cols=35 Identities=26% Similarity=0.168 Sum_probs=21.6
Q ss_pred CCCCCEEeecCC-CCcc--cchhHHhcCcCCcEEeccCc
Q 041418 159 LFLLRYLKLNIP-SLKS--LSSSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 159 l~~L~~L~l~~~-~l~~--lp~~if~~l~~L~~L~l~~~ 194 (349)
.+.|+.|.+.++ .+.. +-... ...++|+.|++++|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH-hhCchhheecccCc
Confidence 566777777765 4443 32333 66777888887763
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.17 E-value=0.45 Score=36.92 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=17.6
Q ss_pred ccchhHHhcCcCCcEEeccCcCccccchh-hhccccch
Q 041418 174 SLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLR 210 (349)
Q Consensus 174 ~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 210 (349)
.+|+..|.+..+|+.+.+.. .+..++.. +...++|+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~ 38 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLK 38 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-S
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhcccccccc
Confidence 46667778899999999875 46666554 33333333
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.77 E-value=0.67 Score=25.26 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=10.4
Q ss_pred CCCEEeecCCCCcccch
Q 041418 161 LLRYLKLNIPSLKSLSS 177 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~ 177 (349)
+|++|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.76 E-value=0.14 Score=44.23 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=36.0
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+...+..+.||++.|.+..+...+ +.++.|..||++.|.+..+|.+++.+..+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~ 94 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAA 94 (326)
T ss_pred hhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHH
Confidence 445555666666666666665555 666666666666666666666666666666555
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.34 E-value=1.8 Score=23.65 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=6.9
Q ss_pred CCCCEEeecCCCCc
Q 041418 160 FLLRYLKLNIPSLK 173 (349)
Q Consensus 160 ~~L~~L~l~~~~l~ 173 (349)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555444
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=72.71 E-value=1.2 Score=42.97 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCCCCccEEEEeecC-CCCCCcccccC-Cccccccc----ccccc------cccccccceeeeeccCCCCC--CCcccCC
Q 041418 242 LFPHSLTHLSFSNTD-RMDDPMPVLET-LPLLQKAD----FWTMG------NAAMPKLECLIINPCAYLKK--MPEHLWC 307 (349)
Q Consensus 242 ~~~~~L~~L~L~~~~-l~~~~~~~l~~-l~~L~~L~----~~~~~------~~~~~~L~~L~l~~c~~l~~--lp~~l~~ 307 (349)
..+++|+.|+++++. +++..+..+.. +++|+.|. ....+ ...+++|+.|+++.|..+.. +......
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 445777777777776 44444444432 45555554 00000 12456788888887776522 2222334
Q ss_pred CCCCCEEEecCC
Q 041418 308 IKSLNKFDCWWP 319 (349)
Q Consensus 308 l~~L~~L~l~~~ 319 (349)
+++|+.+.+..+
T Consensus 320 c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 320 CPNLRELKLLSL 331 (482)
T ss_pred Ccchhhhhhhhc
Confidence 555555554443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.69 E-value=0.14 Score=44.24 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=38.2
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
..++.++.|..|+++.|.+..+|... +.+..++.+++..|..+..|.+.++++.+++++
T Consensus 59 ~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 33444555666666666666666666 666666666666666666676666666666665
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.67 E-value=1.5 Score=37.24 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCCCccEEEEeecC-CCCCCcccccCCccccccc
Q 041418 242 LFPHSLTHLSFSNTD-RMDDPMPVLETLPLLQKAD 275 (349)
Q Consensus 242 ~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~ 275 (349)
...++|+.|++++|. +++..+..+..+++|+.|.
T Consensus 148 ~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 148 GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred ccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 456889999999874 5555555555555555443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.21 E-value=2.5 Score=22.15 Aligned_cols=12 Identities=25% Similarity=0.229 Sum_probs=4.8
Q ss_pred CCCEEeecCCCC
Q 041418 161 LLRYLKLNIPSL 172 (349)
Q Consensus 161 ~L~~L~l~~~~l 172 (349)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444455554444
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.18 E-value=4.3 Score=21.81 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=6.1
Q ss_pred CCCCEEEecCCC
Q 041418 309 KSLNKFDCWWPQ 320 (349)
Q Consensus 309 ~~L~~L~l~~~~ 320 (349)
++|+.|++++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 345555555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.37 E-value=6.4 Score=21.68 Aligned_cols=14 Identities=36% Similarity=0.211 Sum_probs=8.3
Q ss_pred CCCCEEeecCCCCc
Q 041418 160 FLLRYLKLNIPSLK 173 (349)
Q Consensus 160 ~~L~~L~l~~~~l~ 173 (349)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34666666666554
No 88
>PF14162 YozD: YozD-like protein
Probab=50.70 E-value=31 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=21.3
Q ss_pred HHHcCCCCC--CHHHHHHHHHHHHHhCCceee
Q 041418 46 WIAEGFIED--NNEATAKKYLEQLINRGFVEA 75 (349)
Q Consensus 46 wia~g~i~~--~~~~~~~~~~~~L~~~sll~~ 75 (349)
.+..||++. ..+++|.--|+-|+.+|++..
T Consensus 21 L~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 21 LVKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344588876 667777777888888887753
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.13 E-value=15 Score=43.02 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.9
Q ss_pred eecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418 166 KLNIPSLKSLSSSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 166 ~l~~~~l~~lp~~if~~l~~L~~L~l~~~ 194 (349)
||++|+|+.||...|..+.+|+.|+|++|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCC
Confidence 57889999999988889999999999987
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=37.94 E-value=54 Score=34.70 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=51.2
Q ss_pred hhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCCceeeEEeChh
Q 041418 13 IYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGR 92 (349)
Q Consensus 13 SY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~mHdl 92 (349)
-++.||++.++.++..|+++ .++. .+...-. | .+.+...+++|.+.+++...... .+ ..|+.|++
T Consensus 259 v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L 323 (903)
T PRK04841 259 VLDNVDLETRHFLLRCSVLR---SMND-ALIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPL 323 (903)
T ss_pred HHhcCCHHHHHHHHHhcccc---cCCH-HHHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHH
Confidence 37899999999999999986 3443 2332211 2 12257789999999997543211 11 35889999
Q ss_pred HHHHHHHhhc
Q 041418 93 CRPVLLGVAS 102 (349)
Q Consensus 93 i~dla~~i~~ 102 (349)
++++.+.-..
T Consensus 324 ~r~~l~~~l~ 333 (903)
T PRK04841 324 FASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.95 E-value=26 Score=34.40 Aligned_cols=36 Identities=28% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCCCCCEEeecCCCCcccc---hhHHhcCcCCcEEeccCc
Q 041418 158 NLFLLRYLKLNIPSLKSLS---SSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp---~~if~~l~~L~~L~l~~~ 194 (349)
+.+.+..++|++|++..+. .-. ...++|.+|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssls-q~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLS-QIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHH-Hhcchhheeecccc
Confidence 4556677788888765442 223 56788889999888
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.23 E-value=26 Score=34.40 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=18.9
Q ss_pred cccccceeeeeccCC-CCCCCcccCC--CCCCCEEEecCCC
Q 041418 283 AMPKLECLIINPCAY-LKKMPEHLWC--IKSLNKFDCWWPQ 320 (349)
Q Consensus 283 ~~~~L~~L~l~~c~~-l~~lp~~l~~--l~~L~~L~l~~~~ 320 (349)
..|+|+.|+|++|.. +...+ ++.. ...|++|.+.|+|
T Consensus 242 ~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred hcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCc
Confidence 456777777776621 22111 1222 2346677777766
No 93
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=28.58 E-value=25 Score=34.27 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=14.7
Q ss_pred hhCCCCCCchhHHhHh
Q 041418 13 IYCMSPFCLKPCFLYF 28 (349)
Q Consensus 13 SY~~L~~~lk~cFl~~ 28 (349)
|||+|..+.|.|.||+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999873
No 94
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=28.23 E-value=1.7e+02 Score=18.84 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCC
Q 041418 17 SPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGG 82 (349)
Q Consensus 17 L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~ 82 (349)
|.+..-.++.+++-+|++ .+...+|.+.+ |. ........++.|+++++++......++
T Consensus 3 lt~~q~~vL~~l~~~~~~-~~t~~~la~~l---~~----~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 3 LTPSQFRVLMALARHPGE-ELTQSELAERL---GI----SKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp STHHHHHHHHHHHHSTTS-GEEHHHHHHHH---TS-----HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred cCHHHHHHHHHHHHCCCC-CcCHHHHHHHH---Cc----CHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 344445566777777776 45667776665 22 245567789999999999987655443
No 95
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=25.46 E-value=1.5e+02 Score=19.46 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCceeeeecCCCCceeeEEe
Q 041418 59 TAKKYLEQLINRGFVEANKRRAGGTINTCSI 89 (349)
Q Consensus 59 ~~~~~~~~L~~~sll~~~~~~~~~~~~~~~m 89 (349)
.+...++.|+++++++......+++...++.
T Consensus 34 ~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 34 TVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 4557799999999998887777776555543
No 96
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=23.55 E-value=2.5e+02 Score=19.65 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=33.2
Q ss_pred hHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeee
Q 041418 23 PCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANK 77 (349)
Q Consensus 23 ~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~ 77 (349)
++.+|+|..+++..++.+++-+.- | ..+......+..|...+++....
T Consensus 12 ~~l~~la~~~~~~~~s~~eiA~~~---~----i~~~~l~kil~~L~~~Gli~s~~ 59 (83)
T PF02082_consen 12 RILLYLARHPDGKPVSSKEIAERL---G----ISPSYLRKILQKLKKAGLIESSR 59 (83)
T ss_dssp HHHHHHHCTTTSC-BEHHHHHHHH---T----S-HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHH---C----cCHHHHHHHHHHHhhCCeeEecC
Confidence 356677888777667777765532 2 34666778899999999997654
No 97
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=22.91 E-value=2.3e+02 Score=20.41 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeec
Q 041418 38 STRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKR 78 (349)
Q Consensus 38 ~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~ 78 (349)
.-.++|.+.+..|.+ ...+.|-.+-..|.+.++|+.+..
T Consensus 34 ~GsElVdWL~~~~~~--~sR~eAv~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 34 VGSEFIDWLLQEGEA--ESRREAVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred EchHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCC
Confidence 456789988888866 356668888999999999998764
No 98
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=22.78 E-value=2.5e+02 Score=18.98 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=31.7
Q ss_pred ecHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHhCCceeeeecC
Q 041418 37 ISTRHVYQLWIA--EGFIEDNNEATAKKYLEQLINRGFVEANKRR 79 (349)
Q Consensus 37 i~~~~Li~~wia--~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~ 79 (349)
+.-.++|.+.+. +|++ ...+.|...-..|+++++|+.+...
T Consensus 18 F~G~e~v~WL~~~~~~~~--~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFV--RDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTST--SSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccc--cCHHHHHHHHHHHHHCCCEEECCCC
Confidence 466788887776 6766 4566788888999999999987643
No 99
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=21.96 E-value=2.7e+02 Score=19.92 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeec
Q 041418 38 STRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKR 78 (349)
Q Consensus 38 ~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~ 78 (349)
.-.++|.+++..|.+. ....|-.+-..|.+.++|..+..
T Consensus 32 ~GselVdWL~~~~~~~--sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 32 CGCDLVSWLIEVGLAQ--DRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCEEecCC
Confidence 5678899887777774 34567788899999999998764
No 100
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=20.85 E-value=2.6e+02 Score=20.54 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecC
Q 041418 38 STRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRR 79 (349)
Q Consensus 38 ~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~ 79 (349)
--.++|.+.++.|-+. ..+.|..+-..|.+.++|+-+.+.
T Consensus 39 vGsElVdWLi~~g~~~--tR~eAv~~gq~Ll~~gii~HV~~~ 78 (93)
T cd04440 39 PASKLVDWLLAQGDCR--TREEAVILGVGLCNNGFMHHVLEK 78 (93)
T ss_pred chhHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCEEecCCC
Confidence 4567899999998774 566688889999999999987643
No 101
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=67 Score=29.31 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=40.5
Q ss_pred hhHhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCC
Q 041418 2 VLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIED 54 (349)
Q Consensus 2 ~l~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~ 54 (349)
|++.+...-+.=-.++.++.|...++.-.|-+.....-..+...|.+.|.+++
T Consensus 113 vf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~ 165 (412)
T KOG2297|consen 113 VFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPA 165 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCH
Confidence 34444444444445566789999999999999988888889999999999954
Done!