Query 041418
Match_columns 349
No_of_seqs 515 out of 3569
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 169.5 13.7 183 119-320 80-288 (328)
2 3o6n_A APL1; leucine-rich repe 99.8 1.8E-19 6.3E-24 169.0 12.9 167 153-320 110-329 (390)
3 3oja_B Anopheles plasmodium-re 99.8 4.7E-19 1.6E-23 175.4 13.1 197 119-320 74-335 (597)
4 3o6n_A APL1; leucine-rich repe 99.8 7.8E-19 2.7E-23 164.7 13.1 201 116-320 41-306 (390)
5 3oja_B Anopheles plasmodium-re 99.8 1.9E-18 6.6E-23 171.1 12.8 201 116-320 47-312 (597)
6 2id5_A Lingo-1, leucine rich r 99.8 5.2E-18 1.8E-22 163.3 15.5 188 156-346 100-331 (477)
7 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-18 5.3E-23 158.0 10.6 217 120-346 50-302 (313)
8 4fcg_A Uncharacterized protein 99.8 2.5E-18 8.7E-23 157.7 11.8 183 116-320 100-312 (328)
9 3rgz_A Protein brassinosteroid 99.8 1.9E-18 6.5E-23 175.9 11.3 194 152-347 310-550 (768)
10 1xku_A Decorin; proteoglycan, 99.8 1.1E-17 3.8E-22 153.3 14.7 183 120-320 52-274 (330)
11 3v47_A TOLL-like receptor 5B a 99.7 7.2E-18 2.4E-22 161.1 13.5 61 153-213 96-160 (455)
12 2z80_A TOLL-like receptor 2, v 99.7 8.9E-18 3E-22 155.5 11.8 196 120-320 52-312 (353)
13 4fmz_A Internalin; leucine ric 99.7 4.5E-17 1.5E-21 150.1 16.3 192 116-320 62-298 (347)
14 3t6q_A CD180 antigen; protein- 99.7 3.2E-17 1.1E-21 162.3 16.3 220 121-347 255-535 (606)
15 1xku_A Decorin; proteoglycan, 99.7 3.8E-17 1.3E-21 149.7 15.7 219 116-345 72-329 (330)
16 3rgz_A Protein brassinosteroid 99.7 1.2E-17 4E-22 170.2 13.5 168 152-320 434-715 (768)
17 2z66_A Variable lymphocyte rec 99.7 3.1E-17 1.1E-21 148.6 14.6 183 120-320 28-259 (306)
18 3zyi_A Leucine-rich repeat-con 99.7 3.2E-17 1.1E-21 156.9 15.1 196 120-320 75-301 (452)
19 2id5_A Lingo-1, leucine rich r 99.7 2.5E-17 8.6E-22 158.5 14.2 222 119-348 31-309 (477)
20 2ft3_A Biglycan; proteoglycan, 99.7 2E-17 7E-22 151.7 12.7 182 120-320 54-275 (332)
21 3zyj_A Leucine-rich repeat-con 99.7 3.6E-17 1.2E-21 155.9 14.5 166 154-320 106-290 (440)
22 4fmz_A Internalin; leucine ric 99.7 1.3E-16 4.4E-21 147.0 16.1 218 116-348 84-346 (347)
23 2ft3_A Biglycan; proteoglycan, 99.7 4.3E-17 1.5E-21 149.6 12.7 221 115-346 73-331 (332)
24 3v47_A TOLL-like receptor 5B a 99.7 3.6E-17 1.2E-21 156.2 12.4 101 120-225 30-162 (455)
25 1o6v_A Internalin A; bacterial 99.7 1.2E-16 4.2E-21 153.4 15.8 148 116-275 64-249 (466)
26 1ogq_A PGIP-2, polygalacturona 99.7 1.8E-17 6.1E-22 151.0 8.2 194 116-320 72-302 (313)
27 4eco_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 163.2 10.8 223 116-343 202-544 (636)
28 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-17 6.3E-22 151.2 8.1 158 154-320 52-248 (317)
29 1o6v_A Internalin A; bacterial 99.7 2.6E-16 9E-21 151.1 16.2 192 118-320 44-276 (466)
30 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 161.3 6.9 158 154-320 52-248 (487)
31 4eco_A Uncharacterized protein 99.7 2.7E-17 9.4E-22 163.9 9.1 164 152-318 320-545 (636)
32 3vq2_A TLR4, TOLL-like recepto 99.7 1.3E-16 4.4E-21 157.9 13.9 200 115-320 302-556 (606)
33 4ecn_A Leucine-rich repeat pro 99.7 6.8E-17 2.3E-21 165.2 10.9 164 152-318 563-785 (876)
34 3vq2_A TLR4, TOLL-like recepto 99.7 2.8E-16 9.5E-21 155.5 15.0 45 154-199 122-168 (606)
35 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 144.8 11.1 190 152-347 22-260 (306)
36 3zyi_A Leucine-rich repeat-con 99.7 2E-16 6.9E-21 151.3 12.8 217 122-347 56-302 (452)
37 3t6q_A CD180 antigen; protein- 99.7 1E-16 3.5E-21 158.7 11.0 60 154-213 319-382 (606)
38 1ozn_A Reticulon 4 receptor; N 99.7 2.3E-16 7.8E-21 141.5 12.2 163 154-320 50-236 (285)
39 4ecn_A Leucine-rich repeat pro 99.7 2E-16 6.9E-21 161.7 12.2 203 116-320 444-764 (876)
40 2z80_A TOLL-like receptor 2, v 99.7 8.4E-17 2.9E-21 148.9 8.4 198 144-348 51-314 (353)
41 2o6q_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 136.8 14.2 152 154-320 55-216 (270)
42 2z81_A CD282 antigen, TOLL-lik 99.7 1.3E-16 4.4E-21 156.1 9.5 61 153-213 67-129 (549)
43 1ozn_A Reticulon 4 receptor; N 99.7 3.3E-16 1.1E-20 140.4 11.1 188 152-347 26-237 (285)
44 2z62_A TOLL-like receptor 4, v 99.7 3.1E-16 1E-20 140.0 10.7 181 120-320 28-235 (276)
45 3zyj_A Leucine-rich repeat-con 99.7 5.3E-16 1.8E-20 147.8 12.9 190 152-347 80-291 (440)
46 2z7x_B TOLL-like receptor 1, v 99.7 4.9E-16 1.7E-20 151.0 12.4 194 120-320 21-359 (520)
47 1p9a_G Platelet glycoprotein I 99.7 1.7E-15 5.8E-20 136.4 14.9 173 117-320 7-206 (290)
48 1h6u_A Internalin H; cell adhe 99.6 5.6E-16 1.9E-20 140.8 11.8 173 118-320 39-228 (308)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.9E-15 9.8E-20 147.2 17.5 59 285-347 450-509 (562)
50 1ziw_A TOLL-like receptor 3; i 99.6 3E-16 1E-20 157.4 10.3 61 153-213 66-127 (680)
51 3bz5_A Internalin-J, INLJ; leu 99.6 2.4E-15 8E-20 144.1 15.5 185 117-320 39-244 (457)
52 2z63_A TOLL-like receptor 4, v 99.6 8.5E-16 2.9E-20 150.7 12.6 80 116-200 72-165 (570)
53 3o53_A Protein LRIM1, AGAP0063 99.6 3.5E-16 1.2E-20 142.6 8.8 188 156-348 30-250 (317)
54 1wwl_A Monocyte differentiatio 99.6 2.9E-16 9.9E-21 142.9 7.9 163 152-320 111-307 (312)
55 2z7x_B TOLL-like receptor 1, v 99.6 2.5E-15 8.6E-20 146.0 14.8 60 285-348 421-481 (520)
56 3j0a_A TOLL-like receptor 5; m 99.6 2.1E-15 7.3E-20 155.0 14.9 89 231-320 266-373 (844)
57 4g8a_A TOLL-like receptor 4; l 99.6 2E-15 6.8E-20 149.6 14.2 94 116-213 72-179 (635)
58 3oja_A Leucine-rich immune mol 99.6 5.2E-16 1.8E-20 149.8 9.7 186 158-348 32-250 (487)
59 2a5y_B CED-4; apoptosis; HET: 99.6 2.5E-17 8.7E-22 161.3 0.1 95 4-106 361-473 (549)
60 1ziw_A TOLL-like receptor 3; i 99.6 7.1E-15 2.4E-19 147.4 17.2 189 155-347 324-596 (680)
61 3bz5_A Internalin-J, INLJ; leu 99.6 7.4E-15 2.5E-19 140.6 16.4 53 156-213 102-154 (457)
62 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.6E-20 139.0 9.9 176 156-347 37-229 (308)
63 1p9a_G Platelet glycoprotein I 99.6 6.6E-15 2.3E-19 132.5 13.4 183 156-347 6-207 (290)
64 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-14 3.8E-19 149.6 16.7 224 116-346 44-373 (844)
65 2z62_A TOLL-like receptor 4, v 99.6 5.9E-15 2E-19 131.6 12.0 191 152-348 22-237 (276)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.5E-15 2.6E-19 144.1 13.6 87 120-213 52-152 (562)
67 3rfs_A Internalin B, repeat mo 99.6 1.8E-14 6.3E-19 128.3 14.9 169 117-320 38-216 (272)
68 2xwt_C Thyrotropin receptor; s 99.6 3.5E-15 1.2E-19 130.3 9.0 142 155-320 50-216 (239)
69 3rfs_A Internalin B, repeat mo 99.6 4.6E-15 1.6E-19 132.2 9.7 175 115-310 58-247 (272)
70 2z63_A TOLL-like receptor 4, v 99.6 4E-15 1.4E-19 145.9 9.9 77 244-320 420-505 (570)
71 2o6q_A Variable lymphocyte rec 99.6 1.5E-14 5.3E-19 128.6 11.9 176 152-347 31-217 (270)
72 3g06_A SSPH2 (leucine-rich rep 99.6 5.7E-14 1.9E-18 139.0 16.1 181 120-320 61-295 (622)
73 1h6t_A Internalin B; cell adhe 99.5 7.6E-15 2.6E-19 132.2 8.5 159 116-320 42-211 (291)
74 2z81_A CD282 antigen, TOLL-lik 99.5 3.2E-14 1.1E-18 139.0 13.3 184 120-320 26-234 (549)
75 3m19_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 123.7 12.8 61 243-320 129-190 (251)
76 2xwt_C Thyrotropin receptor; s 99.5 4.6E-14 1.6E-18 123.1 11.2 182 120-320 31-237 (239)
77 3g06_A SSPH2 (leucine-rich rep 99.5 1.8E-13 6.2E-18 135.4 16.5 84 216-303 200-302 (622)
78 1jl5_A Outer protein YOPM; leu 99.5 8.7E-14 3E-18 133.1 13.0 188 117-320 8-248 (454)
79 1m9s_A Internalin B; cell inva 99.5 2.7E-14 9.1E-19 141.1 9.3 138 155-320 60-208 (605)
80 1jl5_A Outer protein YOPM; leu 99.5 1.2E-13 4.1E-18 132.1 13.5 54 155-213 190-243 (454)
81 4ezg_A Putative uncharacterize 99.5 5E-14 1.7E-18 119.3 8.8 138 157-320 41-192 (197)
82 1wwl_A Monocyte differentiatio 99.5 2.3E-15 8E-20 136.8 0.3 187 152-348 80-309 (312)
83 2ast_B S-phase kinase-associat 99.5 4.3E-14 1.5E-18 129.4 7.5 38 282-319 244-282 (336)
84 4glp_A Monocyte differentiatio 99.5 2.1E-13 7.1E-18 123.7 11.5 166 152-320 107-305 (310)
85 2o6s_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 118.2 8.4 132 155-310 47-190 (208)
86 3m19_A Variable lymphocyte rec 99.5 2.8E-13 9.4E-18 119.1 11.0 161 152-348 29-192 (251)
87 1z7x_W Ribonuclease inhibitor; 99.4 2.9E-14 9.9E-19 136.2 4.4 168 152-320 48-295 (461)
88 1h6t_A Internalin B; cell adhe 99.4 3.7E-13 1.3E-17 121.1 9.8 146 112-302 60-216 (291)
89 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.7E-18 120.0 8.8 139 156-320 37-183 (263)
90 3e6j_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 114.1 11.9 135 152-320 34-170 (229)
91 2ca6_A RAN GTPase-activating p 99.4 4.1E-14 1.4E-18 132.3 2.1 159 157-320 91-314 (386)
92 2v9t_B SLIT homolog 2 protein 99.4 1.8E-12 6.1E-17 111.7 12.0 136 152-320 26-163 (220)
93 4ay9_X Follicle-stimulating ho 99.4 6.3E-13 2.1E-17 122.7 9.3 166 152-318 45-255 (350)
94 2ca6_A RAN GTPase-activating p 99.4 5.9E-14 2E-18 131.3 2.3 184 154-348 54-316 (386)
95 1m9s_A Internalin B; cell inva 99.4 7.9E-13 2.7E-17 130.5 10.2 109 156-274 83-202 (605)
96 3goz_A Leucine-rich repeat-con 99.4 5.4E-13 1.9E-17 123.7 8.3 186 155-347 45-296 (362)
97 1z7x_W Ribonuclease inhibitor; 99.4 8.3E-14 2.8E-18 133.0 2.1 204 116-320 109-409 (461)
98 3cvr_A Invasion plasmid antige 99.4 4.2E-12 1.4E-16 124.3 13.6 33 287-320 209-241 (571)
99 2v70_A SLIT-2, SLIT homolog 2 99.4 3.3E-12 1.1E-16 110.0 11.2 136 152-320 26-164 (220)
100 4g8a_A TOLL-like receptor 4; l 99.4 8.2E-12 2.8E-16 123.5 15.2 198 118-320 326-578 (635)
101 4glp_A Monocyte differentiatio 99.4 4.9E-13 1.7E-17 121.3 5.9 180 159-348 90-307 (310)
102 1dce_A Protein (RAB geranylger 99.4 1.1E-14 3.9E-19 142.7 -5.6 160 157-320 346-544 (567)
103 2ast_B S-phase kinase-associat 99.3 5.3E-13 1.8E-17 122.1 4.6 171 120-320 47-258 (336)
104 2xot_A Amphoterin-induced prot 99.3 6.5E-12 2.2E-16 116.4 11.0 146 161-320 40-200 (361)
105 2ell_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 105.3 7.5 119 159-320 23-158 (168)
106 3sfz_A APAF-1, apoptotic pepti 99.3 2E-12 7E-17 137.7 8.2 91 4-104 362-452 (1249)
107 2o6s_A Variable lymphocyte rec 99.3 1.4E-11 4.7E-16 104.9 11.1 136 152-320 22-159 (208)
108 2xot_A Amphoterin-induced prot 99.3 6.3E-12 2.1E-16 116.5 9.0 129 154-296 57-200 (361)
109 1vt4_I APAF-1 related killer D 99.3 2.8E-12 9.7E-17 130.3 6.2 84 4-98 353-437 (1221)
110 4ezg_A Putative uncharacterize 99.3 6.2E-12 2.1E-16 106.3 7.4 146 181-348 41-194 (197)
111 1xeu_A Internalin C; cellular 99.3 2.3E-12 7.9E-17 114.2 4.3 157 158-347 17-184 (263)
112 2v9t_B SLIT homolog 2 protein 99.3 2.4E-11 8.3E-16 104.6 10.6 148 163-347 14-164 (220)
113 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6.2E-16 119.8 10.7 172 120-348 59-243 (571)
114 2wfh_A SLIT homolog 2 protein 99.2 4.8E-11 1.6E-15 100.6 11.6 106 160-320 31-137 (193)
115 3ogk_B Coronatine-insensitive 99.2 1.5E-11 5.1E-16 121.1 8.4 163 156-320 266-499 (592)
116 2v70_A SLIT-2, SLIT homolog 2 99.2 4.5E-11 1.5E-15 102.9 10.4 148 163-347 14-165 (220)
117 4ay9_X Follicle-stimulating ho 99.2 2.9E-11 9.8E-16 111.5 9.3 59 152-212 24-84 (350)
118 3ogk_B Coronatine-insensitive 99.2 3.4E-12 1.1E-16 125.7 2.7 34 158-192 218-251 (592)
119 3goz_A Leucine-rich repeat-con 99.2 4E-12 1.4E-16 117.8 3.0 188 120-320 22-295 (362)
120 3e6j_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 102.0 10.6 118 120-268 40-158 (229)
121 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 96.6 11.1 107 160-320 28-135 (177)
122 1w8a_A SLIT protein; signaling 99.2 5.1E-11 1.7E-15 100.3 9.1 62 243-320 76-137 (192)
123 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5.3E-16 98.9 4.6 58 244-318 87-149 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.2 2.5E-11 8.6E-16 100.6 5.6 135 155-322 14-153 (176)
125 2ell_A Acidic leucine-rich nuc 99.2 8.9E-11 3.1E-15 96.3 8.7 138 118-304 22-165 (168)
126 1dce_A Protein (RAB geranylger 99.1 8.3E-11 2.8E-15 115.3 9.5 121 161-316 442-567 (567)
127 4b8c_D Glucose-repressible alc 99.1 7.9E-11 2.7E-15 118.9 8.9 112 152-320 216-327 (727)
128 2je0_A Acidic leucine-rich nuc 99.1 1.2E-10 4.2E-15 93.5 5.7 125 118-273 15-144 (149)
129 1z6t_A APAF-1, apoptotic prote 99.0 2.3E-10 7.9E-15 112.8 8.0 89 4-102 362-450 (591)
130 4b8c_D Glucose-repressible alc 99.0 1.5E-10 5E-15 116.9 5.2 100 152-267 239-338 (727)
131 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 90.5 9.4 100 163-320 15-116 (174)
132 2p1m_B Transport inhibitor res 99.0 5E-11 1.7E-15 117.3 1.0 161 157-318 181-441 (594)
133 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.9E-14 89.5 9.5 101 162-320 11-113 (170)
134 2p1m_B Transport inhibitor res 99.0 2.7E-10 9.1E-15 112.1 5.9 73 181-253 286-405 (594)
135 2wfh_A SLIT homolog 2 protein 99.0 1.4E-09 4.8E-14 91.5 9.3 124 163-347 13-138 (193)
136 1ds9_A Outer arm dynein; leuci 99.0 3E-12 1E-16 108.3 -8.6 60 152-213 40-99 (198)
137 1w8a_A SLIT protein; signaling 98.9 4.1E-09 1.4E-13 88.5 8.3 107 152-274 23-131 (192)
138 2o6r_A Variable lymphocyte rec 98.8 1.5E-08 5E-13 83.7 10.4 127 162-348 9-137 (177)
139 2r9u_A Variable lymphocyte rec 98.8 8.5E-09 2.9E-13 85.2 8.7 50 152-203 27-76 (174)
140 3sb4_A Hypothetical leucine ri 98.8 2.9E-09 1E-13 97.1 6.3 199 119-320 48-308 (329)
141 1a9n_A U2A', U2A'; complex (nu 98.8 6.8E-09 2.3E-13 85.8 7.7 115 116-257 15-152 (176)
142 1ds9_A Outer arm dynein; leuci 98.8 6.6E-10 2.2E-14 93.8 1.3 123 161-320 24-151 (198)
143 3g39_A Variable lymphocyte rec 98.8 2E-08 6.9E-13 82.5 8.2 50 152-203 24-73 (170)
144 2ifg_A High affinity nerve gro 98.7 5.3E-08 1.8E-12 89.2 8.9 34 165-200 13-48 (347)
145 2ifg_A High affinity nerve gro 98.5 2.4E-07 8.1E-12 84.8 8.0 61 152-213 24-86 (347)
146 3un9_A NLR family member X1; l 98.4 1.7E-08 5.7E-13 93.8 -1.4 78 230-320 154-250 (372)
147 4fdw_A Leucine rich hypothetic 98.4 2.2E-06 7.7E-11 80.2 12.9 158 155-320 175-356 (401)
148 3sb4_A Hypothetical leucine ri 98.4 1.3E-06 4.4E-11 79.4 9.7 158 154-316 118-328 (329)
149 2ra8_A Uncharacterized protein 98.2 8.6E-07 2.9E-11 81.8 4.6 177 116-328 103-328 (362)
150 4fdw_A Leucine rich hypothetic 98.2 1.1E-05 3.9E-10 75.3 12.4 156 159-320 202-381 (401)
151 2ra8_A Uncharacterized protein 98.1 1.6E-06 5.5E-11 80.0 4.9 67 282-348 249-320 (362)
152 3e4g_A ATP synthase subunit S, 97.8 9.6E-06 3.3E-10 66.5 3.3 36 285-320 114-150 (176)
153 3un9_A NLR family member X1; l 97.8 4.5E-06 1.5E-10 77.3 0.9 96 160-260 101-226 (372)
154 4fs7_A Uncharacterized protein 97.6 0.0009 3.1E-08 62.1 13.3 39 155-194 157-195 (394)
155 3e4g_A ATP synthase subunit S, 97.5 0.00013 4.5E-09 59.6 5.5 46 152-198 53-100 (176)
156 3rw6_A Nuclear RNA export fact 97.3 0.00023 7.9E-09 62.4 5.3 48 157-206 167-217 (267)
157 4gt6_A Cell surface protein; l 97.1 0.016 5.5E-07 53.5 15.9 112 228-347 262-390 (394)
158 1io0_A Tropomodulin; LRR prote 97.0 0.00066 2.2E-08 56.0 5.2 16 243-258 149-164 (185)
159 4fs7_A Uncharacterized protein 97.0 0.0082 2.8E-07 55.5 12.7 165 174-345 152-376 (394)
160 3rw6_A Nuclear RNA export fact 97.0 0.00067 2.3E-08 59.5 4.8 60 152-213 188-257 (267)
161 3rfe_A Platelet glycoprotein I 96.0 0.0045 1.5E-07 47.9 3.7 36 161-196 32-67 (130)
162 4h09_A Hypothetical leucine ri 96.0 0.05 1.7E-06 49.7 11.2 32 284-316 285-317 (379)
163 1io0_A Tropomodulin; LRR prote 95.9 0.0026 8.8E-08 52.4 1.7 101 118-241 34-161 (185)
164 3rfe_A Platelet glycoprotein I 95.4 0.016 5.5E-07 44.7 4.5 38 163-203 11-50 (130)
165 4gt6_A Cell surface protein; l 94.2 0.087 3E-06 48.5 7.1 45 155-201 260-304 (394)
166 4h09_A Hypothetical leucine ri 89.0 0.66 2.3E-05 42.1 6.4 57 155-212 258-315 (379)
167 1pgv_A TMD-1, tropomodulin TMD 81.9 1.6 5.5E-05 35.9 4.6 39 158-197 39-83 (197)
168 1pgv_A TMD-1, tropomodulin TMD 49.7 13 0.00045 30.3 3.6 67 119-198 40-112 (197)
169 1w5s_A Origin recognition comp 44.8 9.8 0.00034 34.4 2.3 69 8-77 297-372 (412)
170 2lz0_A Uncharacterized protein 28.4 36 0.0012 24.2 2.6 39 155-194 15-53 (100)
171 1uhw_A Pleckstrin; three-helix 26.9 80 0.0027 22.9 4.2 70 3-78 8-77 (109)
172 3lqv_P Splicing factor 3B subu 24.6 23 0.00078 20.4 0.7 9 29-37 30-38 (39)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.3e-20 Score=169.50 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=121.7
Q ss_pred CCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418 119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH 198 (349)
Q Consensus 119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~ 198 (349)
..+++.|.+.++.... +|..++++++|++|++++|.++.+|..+ +++++|++|++++|.++.
T Consensus 80 ~~~l~~L~L~~n~l~~-----------------lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----------------FPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRA 141 (328)
T ss_dssp STTCCEEEEESSCCSS-----------------CCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCC
T ss_pred ccceeEEEccCCCchh-----------------cChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCcccc
Confidence 4678888888776642 6677777888888888888888888777 888888888888887778
Q ss_pred cchhhhccccchhhh-hCCCCCCeeecc-------CC-CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCC
Q 041418 199 TVDEFWKMKKLRHLN-FGLSCLKSLKLA-------NE-SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 199 lp~~i~~L~~L~~L~-~~l~~L~~L~l~-------~~-~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~ 260 (349)
+|..++++++|++|+ .....+..+.-. +. ..+++|+.|++++| ..+++|+.|++++|.+.+.
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC
Confidence 888787777777776 111111111000 00 22556666666665 4466777777777777654
Q ss_pred CcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 261 PMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 261 ~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+ +.++.+++|+.|+ ..+...+.+++|+.|++++|...+.+|..++.+++|++|++++|+
T Consensus 222 ~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 G-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp C-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred c-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 4 3566677777766 222223456777777777777777777777777777777777776
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=1.8e-19 Score=169.04 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=87.3
Q ss_pred CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-----------hCCCCCC
Q 041418 153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-----------FGLSCLK 220 (349)
Q Consensus 153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-----------~~l~~L~ 220 (349)
|..++++++|++|++++|.++.+|..+|+++++|++|++++|.+..+++ .++.+++|++|+ +.+++|+
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~ 189 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccc
Confidence 3446666667777776666666666655666667777776666655533 356666666665 3344555
Q ss_pred eeeccCC-----CCCC---------------------CccEEEEccC--------CCCCCccEEEEeecCCCCCCccccc
Q 041418 221 SLKLANE-----SKMP---------------------WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLE 266 (349)
Q Consensus 221 ~L~l~~~-----~~~~---------------------~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~ 266 (349)
.|+++++ ...+ +|+.|++++| ..+++|+.|++++|.+.+..+..+.
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 5544311 1122 3444444433 2344555555555555444444555
Q ss_pred CCccccccc-------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 267 TLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 267 ~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+++|+.|+ .++...+.+++|+.|++++|. +..+|..++.+++|+.|++++|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 555555554 111112334555555555553 44555444445555555555544
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.7e-19 Score=175.42 Aligned_cols=197 Identities=16% Similarity=0.090 Sum_probs=108.4
Q ss_pred CCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418 119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL 186 (349)
Q Consensus 119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L 186 (349)
+++++.|.+.++.... ..+..+..+..|+ .|..++++++|++|++++|.++.+|..+|+++++|
T Consensus 74 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 74 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 4566666666655432 1112233333333 33456777777777777777777777655777777
Q ss_pred cEEeccCcCccccch-hhhccccchhhh-----------hCCCCCCeeeccCC-----CCCC------------------
Q 041418 187 YTLDMPFSYIDHTVD-EFWKMKKLRHLN-----------FGLSCLKSLKLANE-----SKMP------------------ 231 (349)
Q Consensus 187 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~-----------~~l~~L~~L~l~~~-----~~~~------------------ 231 (349)
++|++++|.+..+|+ .++++++|++|+ +.+++|+.|+++++ ..++
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 777777776666543 466777777776 34455555554411 1222
Q ss_pred ---CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeee
Q 041418 232 ---WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIIN 293 (349)
Q Consensus 232 ---~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~ 293 (349)
+|+.|++++| ..+++|+.|++++|.+.+.++..++.+++|+.|+ .++...+.+++|+.|+++
T Consensus 230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 3444444444 3345555566665555555445555555555555 222222335556666666
Q ss_pred ccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 294 PCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 294 ~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+|. +..+|..++.+++|+.|++++|+
T Consensus 310 ~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 310 HNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCC-CCccCcccccCCCCCEEECCCCC
Confidence 554 44555555555555555555554
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=7.8e-19 Score=164.73 Aligned_cols=201 Identities=17% Similarity=0.115 Sum_probs=151.8
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL 186 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L 186 (349)
....+++|.+.+.++.....+...+ ..+.+++.|. .|..++.+++|++|++++|.++.+|+..|+++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchhhCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3456788999988876643222111 2234444444 34589999999999999999999887755999999
Q ss_pred cEEeccCcCccccchhh-hccccchhhh--------------hCCCCCCeeeccCC-------CCCCCccEEEEccC---
Q 041418 187 YTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY--- 241 (349)
Q Consensus 187 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~--- 241 (349)
++|++++|.++.+|..+ +++++|++|+ +.+++|+.|+++++ ..+++|+.|+++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 99999999999999875 8899999998 56788999988732 56788888888776
Q ss_pred --C---------------------CCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418 242 --L---------------------FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL 290 (349)
Q Consensus 242 --~---------------------~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L 290 (349)
. ..++|+.|++++|.+++. +.++.+++|+.|+ .. +...+.+++|+.|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 1 233566666666666543 5677888888888 11 2223567899999
Q ss_pred eeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 291 IINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 291 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
++++|. +..+|..++.+++|++|++++|.
T Consensus 278 ~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 278 YISNNR-LVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp ECCSSC-CCEEECSSSCCTTCCEEECCSSC
T ss_pred ECCCCc-CcccCcccCCCCCCCEEECCCCc
Confidence 999987 88888878889999999999987
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.9e-18 Score=171.06 Aligned_cols=201 Identities=17% Similarity=0.116 Sum_probs=153.1
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL 186 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L 186 (349)
...+++++.+.+.++.....+...+ ..+.+++.|. .|..|+.+++|++|++++|.++.+|+..|+++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHH-ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 3456788999888776643222211 2234455544 45689999999999999999999988777999999
Q ss_pred cEEeccCcCccccchhh-hccccchhhh--------------hCCCCCCeeeccCC-------CCCCCccEEEEccC---
Q 041418 187 YTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY--- 241 (349)
Q Consensus 187 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~--- 241 (349)
++|++++|.++.+|..+ +++++|++|+ +.+++|+.|+++++ ..+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc
Confidence 99999999999998875 8999999998 56788999998732 56788999888876
Q ss_pred --CC---------------------CCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418 242 --LF---------------------PHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL 290 (349)
Q Consensus 242 --~~---------------------~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L 290 (349)
.. .++|+.|++++|.+++ ++.++.+++|+.|+ .. +...+.+++|+.|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 22 2356666666666654 25678888888888 11 2233568899999
Q ss_pred eeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 291 IINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 291 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
++++|. +..+|..++.+++|+.|++++|+
T Consensus 284 ~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 284 YISNNR-LVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp ECTTSC-CCEEECSSSCCTTCCEEECCSSC
T ss_pred ECCCCC-CCCCCcccccCCCCcEEECCCCC
Confidence 999987 88888888889999999999987
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=163.26 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=94.0
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh--------------hCCCCCC
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN--------------FGLSCLK 220 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~--------------~~l~~L~ 220 (349)
++++++|++|++++|.++.+++..|.++++|++|++++|.+..+ |..+..+++|++|+ ..+++|+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 34444444444444444443332224444444444444444333 22344444444444 3344555
Q ss_pred eeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-----
Q 041418 221 SLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----- 275 (349)
Q Consensus 221 ~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----- 275 (349)
.|++.+. ..+++|+.|+++++ ....+|+.|++++|.++..+...+..+++|+.|+
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 5554411 34556666666654 1223677777777777766656677777777776
Q ss_pred --ccc-cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccc
Q 041418 276 --FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEM 346 (349)
Q Consensus 276 --~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~ 346 (349)
.+. .....+++|+.|++++|......|..+..+++|+.|++++|. +..+.. .+.....+..+.+.+|.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ---LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC---CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc---CceeCHhHcCCCcccCEEEccCCC
Confidence 111 011345666666666665322234456666666666666664 112222 23334444455555443
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.6e-18 Score=158.03 Aligned_cols=217 Identities=13% Similarity=0.135 Sum_probs=136.2
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc-------------CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcC
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLN 185 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~ 185 (349)
.+++.+.+.++.... ...++..+.+++.|+ +|..++++++|++|++++|.++ .+|..+ +++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 578888888776642 001112223333222 5566666667777777766666 556555 66677
Q ss_pred CcEEeccCcCcc-ccchhhhccccchhhhhCCCCCC-ee--eccCCCCCC-CccEEEEccC----------CCCCCccEE
Q 041418 186 LYTLDMPFSYID-HTVDEFWKMKKLRHLNFGLSCLK-SL--KLANESKMP-WLSKIVLAEY----------LFPHSLTHL 250 (349)
Q Consensus 186 L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~l~~L~-~L--~l~~~~~~~-~L~~L~l~~~----------~~~~~L~~L 250 (349)
|++|++++|.+. .+|..++.+++|++|+-.-..+. .+ .+ ..++ +|+.|++++| ..++ |+.|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 777777666554 55666666665555541111111 00 01 3444 7888888777 3344 8899
Q ss_pred EEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHH
Q 041418 251 SFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPEL 323 (349)
Q Consensus 251 ~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~ 323 (349)
++++|.+.+..+..++.+++|+.|+ ........+++|+.|++++|...+.+|..+..+++|++|++++|+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~--- 279 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN--- 279 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE---
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc---
Confidence 9999988877778888888888888 122223567889999999988555889889999999999999987
Q ss_pred HHhhhhcccccccccceeeeccc
Q 041418 324 RQKLREFEDKEQQIPNRQSTGEM 346 (349)
Q Consensus 324 ~~~l~~~~~~i~~ip~i~~~~~~ 346 (349)
+....+....+..+..+.+.+|.
T Consensus 280 l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEECCCSTTGGGSCGGGTCSSS
T ss_pred ccccCCCCccccccChHHhcCCC
Confidence 11111233445555556666553
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.5e-18 Score=157.68 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=145.7
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc-
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS- 194 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~- 194 (349)
...+++++.|.+.++.... +|..++++++|++|++++|.++.+|..+ +++++|++|++++|
T Consensus 100 l~~l~~L~~L~L~~n~l~~-----------------lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLME-----------------LPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRACP 161 (328)
T ss_dssp GGGGTTCSEEEEESSCCCC-----------------CCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEEEET
T ss_pred hhhCCCCCEEECCCCCccc-----------------hhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECCCCC
Confidence 3447889999998876642 7788889999999999999999999888 99999999999997
Q ss_pred Cccccchhhhc---------cccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC---------CCCCCccEEEEe
Q 041418 195 YIDHTVDEFWK---------MKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY---------LFPHSLTHLSFS 253 (349)
Q Consensus 195 ~l~~lp~~i~~---------L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~---------~~~~~L~~L~L~ 253 (349)
.++.+|..++. +++|++|+ ..++.+.. .+ ..+++|+.|++++| ..+++|+.|+++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l---~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SI---ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GG---GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hh---cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 78888887764 66666665 11221110 11 56778888888887 567899999999
Q ss_pred ecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 254 NTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 254 ~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+|.+.+..+..++.+++|+.|+ .++...+.+++|+.|++++|+.++.+|.+++++++|+.+.+..+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9998888778888999999888 333344678999999999999999999999999999999987543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=1.9e-18 Score=175.92 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=130.2
Q ss_pred CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc-cchhhh--------------h
Q 041418 152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK-KLRHLN--------------F 214 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~--------------~ 214 (349)
+|..++++++|++|++++|.++ .+|...|+++++|++|++++|.+. .+|..+++++ +|++|+ .
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 5666777777777777777776 677663377777777777777554 6677777666 677766 1
Q ss_pred C--CCCCCeeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCcccc
Q 041418 215 G--LSCLKSLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQ 272 (349)
Q Consensus 215 ~--l~~L~~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 272 (349)
. +++|+.|++++. ..+++|+.|++++| ..+++|+.|++++|.+.+..+..++.+++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 1 566777777622 45677777777776 4567788888888877777767777777777
Q ss_pred ccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeec
Q 041418 273 KAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTG 344 (349)
Q Consensus 273 ~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~ 344 (349)
.|+ ..+...+.+++|+.|++++|...+.+|.+++.+++|++|++++|. +...+...+.....+..+.+.+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--FSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGGCTTCCEEECCS
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCCCEEECCC
Confidence 777 122233567788888888887666788888888888888888876 1112222444555555566655
Q ss_pred ccc
Q 041418 345 EMM 347 (349)
Q Consensus 345 ~~~ 347 (349)
|.+
T Consensus 548 N~l 550 (768)
T 3rgz_A 548 NLF 550 (768)
T ss_dssp SEE
T ss_pred Ccc
Confidence 543
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=1.1e-17 Score=153.34 Aligned_cols=183 Identities=22% Similarity=0.160 Sum_probs=100.0
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
+.++.|.+.++...... ...+.++..|+ .|..++++++|++|++++|.++.+|..+ . ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-P--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-C--TTCC
T ss_pred CCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-c--cccc
Confidence 56777777776654321 11223333332 2555666666666666666666666544 2 5666
Q ss_pred EEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEccC-------CCCCCc
Q 041418 188 TLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAEY-------LFPHSL 247 (349)
Q Consensus 188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~~-------~~~~~L 247 (349)
+|++++|.++.+|.. +.++++|++|+ ++++ ..+++|+.|++++| ...++|
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~----------l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L 194 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVE----------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEE----------CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTC
T ss_pred EEECCCCcccccCHhHhcCCccccEEE----------CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccC
Confidence 666666655555432 45555555554 3310 33556666666555 223566
Q ss_pred cEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418 248 THLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP 319 (349)
Q Consensus 248 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 319 (349)
+.|++++|.+++.++..++.+++|+.|+ .... ..+.+++|+.|++++|. +..+|.++..+++|++|++++|
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 6666666666555555566666666665 1110 12345566666666664 5566666666666666666665
Q ss_pred C
Q 041418 320 Q 320 (349)
Q Consensus 320 ~ 320 (349)
+
T Consensus 274 ~ 274 (330)
T 1xku_A 274 N 274 (330)
T ss_dssp C
T ss_pred c
Confidence 5
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=7.2e-18 Score=161.13 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=30.7
Q ss_pred CcccCCCCCCCEEeecCCCCcc-cchh-HHhcCcCCcEEeccCcCcccc-chh-hhccccchhhh
Q 041418 153 PSGIENLFLLRYLKLNIPSLKS-LSSS-LLSNLLNLYTLDMPFSYIDHT-VDE-FWKMKKLRHLN 213 (349)
Q Consensus 153 p~~i~~l~~L~~L~l~~~~l~~-lp~~-if~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~ 213 (349)
|..++++++|++|++++|.++. +|.. .|+++++|++|++++|.+..+ |.. ++++++|++|+
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 4455555555555555555543 2222 125555555555555544444 333 45555555554
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=155.45 Aligned_cols=196 Identities=21% Similarity=0.128 Sum_probs=140.3
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
++++.|.+.++..... ....+.+++.|+ .|..++++++|++|++++|.++.+|...|+++++|+
T Consensus 52 ~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYI----SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCccc----CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 5788888887766532 222344444444 456789999999999999999999988669999999
Q ss_pred EEeccCcCccccch--hhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEcc
Q 041418 188 TLDMPFSYIDHTVD--EFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAE 240 (349)
Q Consensus 188 ~L~l~~~~l~~lp~--~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~ 240 (349)
+|++++|.++.+|. .++++++|++|+ +.+++|+.|+++++ ..+++|+.|++++
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 99999998889987 678888888887 34566666666511 4566777777777
Q ss_pred C----------CCCCCccEEEEeecCCCCCCcccccC---Cccccccc------------ccccccccccccceeeeecc
Q 041418 241 Y----------LFPHSLTHLSFSNTDRMDDPMPVLET---LPLLQKAD------------FWTMGNAAMPKLECLIINPC 295 (349)
Q Consensus 241 ~----------~~~~~L~~L~L~~~~l~~~~~~~l~~---l~~L~~L~------------~~~~~~~~~~~L~~L~l~~c 295 (349)
| ..+++|+.|++++|.+++.+...+.. .+.++.+. .++...+.+++|+.|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 6 24677888888888777654433322 22233222 11112356789999999998
Q ss_pred CCCCCCCccc-CCCCCCCEEEecCCC
Q 041418 296 AYLKKMPEHL-WCIKSLNKFDCWWPQ 320 (349)
Q Consensus 296 ~~l~~lp~~l-~~l~~L~~L~l~~~~ 320 (349)
. +..+|.++ +.+++|++|++++|+
T Consensus 288 ~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 288 Q-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 7 88999875 899999999999987
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.5e-17 Score=150.09 Aligned_cols=192 Identities=22% Similarity=0.185 Sum_probs=100.5
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLN 185 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~ 185 (349)
...+++++.|.+.++.....+. +.+++.|+ -.++++.+++|++|++++|.++.+|. + ..+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~ 133 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-L-ANLTK 133 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-G-TTCTT
T ss_pred hhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-h-ccCCc
Confidence 3446677777777665542111 33333333 22356777777777777777777665 4 67777
Q ss_pred CcEEeccCc-Cccccchhhhccccchhhh------------hCCCCCCeeeccCC--------CCCCCccEEEEccC---
Q 041418 186 LYTLDMPFS-YIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY--- 241 (349)
Q Consensus 186 L~~L~l~~~-~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~--- 241 (349)
|++|++++| .+..++ .+..+++|++|+ +.+++|+.|++++. ..+++|+.|++++|
T Consensus 134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence 777777777 444443 366666666665 34556666666521 33445555555544
Q ss_pred -----CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418 242 -----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS 310 (349)
Q Consensus 242 -----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 310 (349)
..+++|+.|++++|.++..+. +..+++|+.|+ ........+++|+.|++++|. +..+|. +..+++
T Consensus 213 ~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 288 (347)
T 4fmz_A 213 DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQ 288 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred CCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCChh-hcCCCC
Confidence 234455555555555544332 44455555444 000112334445555554443 444432 444444
Q ss_pred CCEEEecCCC
Q 041418 311 LNKFDCWWPQ 320 (349)
Q Consensus 311 L~~L~l~~~~ 320 (349)
|+.|++++|+
T Consensus 289 L~~L~L~~n~ 298 (347)
T 4fmz_A 289 LNSLFLNNNQ 298 (347)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECcCCc
Confidence 4444444443
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=3.2e-17 Score=162.32 Aligned_cols=220 Identities=21% Similarity=0.187 Sum_probs=155.2
Q ss_pred CeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEE
Q 041418 121 QLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTL 189 (349)
Q Consensus 121 ~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L 189 (349)
+++.+.+.++.....+. ..+.+++.|+ +|..++++++|++|++++|.++.+++..|+++++|++|
T Consensus 255 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISS----NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCT----TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCH----HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 57777777665543222 2233333333 78888888999999999998887755433888999999
Q ss_pred eccCcCcc-ccchh-hhccccchhhh----------------hCCCCCCeeeccCC----------CCCCCccEEEEccC
Q 041418 190 DMPFSYID-HTVDE-FWKMKKLRHLN----------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY 241 (349)
Q Consensus 190 ~l~~~~l~-~lp~~-i~~L~~L~~L~----------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~ 241 (349)
++++|.+. .+|.. ++.+++|++|+ +.+++|+.|+++++ ..+++|+.|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 99988544 66554 78888888887 45678888888722 56788999999887
Q ss_pred -----------CCCCCccEEEEeecCCCCCCcccccCCccccccc----cc-----c--cccccccccceeeeeccCCCC
Q 041418 242 -----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FW-----T--MGNAAMPKLECLIINPCAYLK 299 (349)
Q Consensus 242 -----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~-----~--~~~~~~~~L~~L~l~~c~~l~ 299 (349)
..+++|+.|++++|.+...++..++.+++|++|+ .+ . ...+.+++|+.|++++|...+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 4578899999999998888778888899999888 11 1 123567889999999987444
Q ss_pred CCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418 300 KMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 300 ~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~ 347 (349)
..|..++.+++|++|++++|.- .......+..++.+ .+.+.+|.+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--CGGGGGGGTTCCSC-EEECCSSCC
T ss_pred cChhhhccccCCCEEECCCCcc--CcCChhHhCccccc-EEECcCCcc
Confidence 4466788899999999999871 11111244444444 555555544
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=3.8e-17 Score=149.71 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=156.1
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL 184 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~ 184 (349)
...+++++.|.+.++...... +..+.++..|+ +|..+. ++|++|++++|.++.++...|++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred hccCCCCCEEECCCCcCCeeC----HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence 567899999999988775322 23344444444 565554 7999999999999999888779999
Q ss_pred CCcEEeccCcCcc---ccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEE
Q 041418 185 NLYTLDMPFSYID---HTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLS 251 (349)
Q Consensus 185 ~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~ 251 (349)
+|++|++++|.++ ..|..+.++++|++|+-.-..+..+.- .-.++|+.|++++| ..+++|+.|+
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 9999999999765 346667777777777511112222221 23367888888777 5678999999
Q ss_pred EeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc-cC------CCCCCCEEEec
Q 041418 252 FSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LW------CIKSLNKFDCW 317 (349)
Q Consensus 252 L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~ 317 (349)
+++|.+.+.+...+..+++|+.|+ .++.....+++|+.|++++|. ++.+|.. +. ..++|+.+++.
T Consensus 223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp CCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred CCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEee
Confidence 999998887777788888998888 333334578899999999987 8888753 22 24789999999
Q ss_pred CCCHHHHHhhhh-cccccccccceeeecc
Q 041418 318 WPQPELRQKLRE-FEDKEQQIPNRQSTGE 345 (349)
Q Consensus 318 ~~~~~~~~~l~~-~~~~i~~ip~i~~~~~ 345 (349)
++|-... .+.+ .+.....+..+++.+|
T Consensus 302 ~N~~~~~-~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNPVQYW-EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSSCGG-GSCGGGGTTCCCGGGEEC---
T ss_pred cCccccc-ccCccccccccceeEEEeccc
Confidence 9994332 2222 6677777888887776
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.2e-17 Score=170.15 Aligned_cols=168 Identities=20% Similarity=0.151 Sum_probs=114.4
Q ss_pred CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhh--------------hC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLN--------------FG 215 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~--------------~~ 215 (349)
+|..++++++|++|++++|.++ .+|..+ +.+++|++|++++|.+. .+|..++++++|++|+ +.
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 4555666666666666666555 455554 56666666666666443 4555566666666555 34
Q ss_pred CCCCCeeeccCC----------CCCCCccEEEEccC--------------------------------------------
Q 041418 216 LSCLKSLKLANE----------SKMPWLSKIVLAEY-------------------------------------------- 241 (349)
Q Consensus 216 l~~L~~L~l~~~----------~~~~~L~~L~l~~~-------------------------------------------- 241 (349)
+++|+.|+++++ ..+++|+.|++++|
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 555666655521 34556666666554
Q ss_pred ------------------------------------CCCCCccEEEEeecCCCCCCcccccCCccccccc--------cc
Q 041418 242 ------------------------------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FW 277 (349)
Q Consensus 242 ------------------------------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~ 277 (349)
..+++|+.|++++|.+++..+..++.+++|+.|+ .+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 1135688899999998888888888888888888 34
Q ss_pred ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 278 TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 278 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+...+.+++|+.|++++|...+.+|..++.+++|++|++++|+
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 4445778889999999988777888888889999999998875
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.1e-17 Score=148.63 Aligned_cols=183 Identities=19% Similarity=0.159 Sum_probs=128.2
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCc-ccCCCCCCCEEeecCCCCccc---chhHHhcCcCCcEEeccCcC
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPS-GIENLFLLRYLKLNIPSLKSL---SSSLLSNLLNLYTLDMPFSY 195 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~-~i~~l~~L~~L~l~~~~l~~l---p~~if~~l~~L~~L~l~~~~ 195 (349)
++++.|.+.++.... +|. .++++++|++|++++|.++.+ |..+ ..+++|++|++++|.
T Consensus 28 ~~l~~L~L~~n~l~~-----------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 28 SSATRLELESNKLQS-----------------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNG 89 (306)
T ss_dssp TTCCEEECCSSCCCC-----------------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCS
T ss_pred CCCCEEECCCCccCc-----------------cCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCc
Confidence 577888877766542 332 245566666666666665543 3444 556666666666666
Q ss_pred ccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC---------
Q 041418 196 IDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY--------- 241 (349)
Q Consensus 196 l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~--------- 241 (349)
+..+|..+..+++|++|+ ..+++|+.|++++. ..+++|+.|++++|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 666665566666666655 34566667666621 45788889988877
Q ss_pred --CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCcccCCCC-C
Q 041418 242 --LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIK-S 310 (349)
Q Consensus 242 --~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~-~ 310 (349)
..+++|+.|++++|.+++.++..+..+++|+.|+ ... .....+++|+.|++++|...+..|..+..++ +
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 5678999999999999887778888999999988 111 1235678999999999986666677788885 9
Q ss_pred CCEEEecCCC
Q 041418 311 LNKFDCWWPQ 320 (349)
Q Consensus 311 L~~L~l~~~~ 320 (349)
|++|++++|+
T Consensus 250 L~~L~L~~N~ 259 (306)
T 2z66_A 250 LAFLNLTQND 259 (306)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEccCCC
Confidence 9999999987
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=3.2e-17 Score=156.85 Aligned_cols=196 Identities=15% Similarity=0.045 Sum_probs=136.3
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
++++.|.+.++.... ..+..|.++..|+ .|..+.++++|++|++++|.++.+|...|+.+++|+
T Consensus 75 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 578888887776642 2222333333333 345667777777777777777777666556777777
Q ss_pred EEeccCcCccccch-hhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCC
Q 041418 188 TLDMPFSYIDHTVD-EFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDR 257 (349)
Q Consensus 188 ~L~l~~~~l~~lp~-~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l 257 (349)
+|++++|.++.+|. .+.++++|++|+ .....+..+....-..+++|+.|++++| ..+++|+.|++++|.+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 77777776666655 355666666665 3333333332100056788999998888 5678999999999999
Q ss_pred CCCCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 258 MDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
.+.++..+..+++|+.|+ .. ......+++|+.|++++|. +..+|.. +..+++|+.|++++||
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 988888999999999988 11 1123567899999999987 7788764 6789999999999877
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=158.48 Aligned_cols=222 Identities=18% Similarity=0.113 Sum_probs=122.7
Q ss_pred CCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418 119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL 186 (349)
Q Consensus 119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L 186 (349)
.++++.|.+.++.... ..+..|.++..|+ .|..++++++|++|++++|.++.+|...|+++++|
T Consensus 31 ~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 3578899888877653 2223344444444 46778888888888888888888887666788888
Q ss_pred cEEeccCcCcccc-chhhhccccchhhh--------------hCCCCCCeeeccCC----------CCCCCccEEEEccC
Q 041418 187 YTLDMPFSYIDHT-VDEFWKMKKLRHLN--------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY 241 (349)
Q Consensus 187 ~~L~l~~~~l~~l-p~~i~~L~~L~~L~--------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~ 241 (349)
++|++++|.+..+ |..+.++++|++|+ +.+++|+.|++++. ..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 8888888866665 44567777777776 23444444444311 23444444444443
Q ss_pred ----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCc
Q 041418 242 ----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPE 303 (349)
Q Consensus 242 ----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~ 303 (349)
..+++|+.|++++|...+...+......+|+.|+ .++ ...+.+++|+.|++++|. +..++.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 265 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG 265 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh
Confidence 2344444444444443332222222223444443 110 011345566666666655 444433
Q ss_pred -ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418 304 -HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 304 -~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~ 348 (349)
.+..+++|+.|++++|. +..+.+ .+.....+..+.+.+|.++
T Consensus 266 ~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQ---LAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TSCTTCTTCCEEECCSSC---CSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred hhccccccCCEEECCCCc---cceECHHHhcCcccCCEEECCCCcCc
Confidence 35566666666666664 112222 4445555666666666543
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=2e-17 Score=151.72 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
++++.|.+.++.... ..+..+.++..|+ .|..++++++|++|++++|.++.+|..+ . ++|+
T Consensus 54 ~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-P--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-C--TTCC
T ss_pred CCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-c--ccCC
Confidence 567777777765542 1122233333333 3555666666666666666666666655 2 5666
Q ss_pred EEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEccC-------CCCCCc
Q 041418 188 TLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAEY-------LFPHSL 247 (349)
Q Consensus 188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~~-------~~~~~L 247 (349)
+|++++|.++.+|.. ++++++|++|+ ++++ ..+ +|+.|++++| ...++|
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~----------l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L 195 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIE----------MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETL 195 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEE----------CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEE----------CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCC
Confidence 666666666666543 55566655554 3200 111 4444444444 112355
Q ss_pred cEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418 248 THLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP 319 (349)
Q Consensus 248 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 319 (349)
+.|++++|.+...++..+..+++|+.|+ .... ..+.+++|+.|++++|. +..+|.++..+++|+.|++++|
T Consensus 196 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCC
Confidence 5555555555555444555555555555 1100 12344555555555554 4455555555555555555555
Q ss_pred C
Q 041418 320 Q 320 (349)
Q Consensus 320 ~ 320 (349)
+
T Consensus 275 ~ 275 (332)
T 2ft3_A 275 N 275 (332)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=155.94 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=106.1
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-hCCCCCCeeeccCCCCCC
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-FGLSCLKSLKLANESKMP 231 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~ 231 (349)
..|.++++|++|++++|.++.+|...|..+++|++|++++|.++.+|. .+.++++|++|+ .....+..+.-..-..++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 344455555555555555555544333455555555555554444433 234444444443 111122221100005678
Q ss_pred CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeeeecc
Q 041418 232 WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPC 295 (349)
Q Consensus 232 ~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c 295 (349)
+|+.|++++| ..+++|+.|++++|.++..++..+..+++|+.|+ .. ......+++|+.|++++|
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 8999999888 5678999999999999888788899999999988 11 112246789999999998
Q ss_pred CCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 296 AYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 296 ~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
. +..+|.. +..+++|+.|++++||
T Consensus 266 ~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 266 N-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-CCccChhHhccccCCCEEEcCCCC
Confidence 7 7777764 6789999999999877
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=1.3e-16 Score=147.03 Aligned_cols=218 Identities=16% Similarity=0.100 Sum_probs=150.0
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL 184 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~ 184 (349)
...+++++.|.+.++..... ..+.++..|+ +|. +..+++|++|++++|.....+..+ +.++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~-~~l~ 155 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL-SNMT 155 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGG-TTCT
T ss_pred hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccch-hhCC
Confidence 56677888888877765432 1234444444 333 777778888888877443333335 7778
Q ss_pred CCcEEeccCcCccccchhhhccccchhhh------------hCCCCCCeeeccCC--------CCCCCccEEEEccC---
Q 041418 185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY--- 241 (349)
Q Consensus 185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~--- 241 (349)
+|++|++++|.+..++. ++.+++|++|+ ..+++|+.|++++. ..+++|+.|++++|
T Consensus 156 ~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence 88888888777777765 77777777776 45667777776622 56788999999888
Q ss_pred -----CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418 242 -----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS 310 (349)
Q Consensus 242 -----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 310 (349)
..+++|+.|++++|.++.. +.+..+++|+.|+ ........+++|+.|++++|......|..++.+++
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 5788999999999988764 5688888888887 11122356788999999998744455566888999
Q ss_pred CCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418 311 LNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 311 L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
|++|++++|+ +..+.+ ......+..+.+.+|.++
T Consensus 313 L~~L~L~~n~---l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNH---ITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSS---CCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCc---cccccC-hhhhhccceeehhhhccc
Confidence 9999999988 222222 455666777778777664
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=4.3e-17 Score=149.56 Aligned_cols=221 Identities=14% Similarity=0.072 Sum_probs=152.7
Q ss_pred CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcC
Q 041418 115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNL 183 (349)
Q Consensus 115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l 183 (349)
....+++++.|.+.++.... ..+..+.++..|+ +|..+. ++|++|++++|.++.+|...|+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l 146 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred HhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCC
Confidence 35678899999999887653 2234455555554 666555 799999999999999998766999
Q ss_pred cCCcEEeccCcCccc---cchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEE
Q 041418 184 LNLYTLDMPFSYIDH---TVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHL 250 (349)
Q Consensus 184 ~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L 250 (349)
++|++|++++|.++. .|..+..+ +|++|+-.-.++..+.. .-.++|+.|++++| ..+++|+.|
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 999999999997753 45556655 66666511111111111 22356666766666 567788999
Q ss_pred EEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc-cCC------CCCCCEEEe
Q 041418 251 SFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LWC------IKSLNKFDC 316 (349)
Q Consensus 251 ~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~------l~~L~~L~l 316 (349)
++++|.+...+...++.+++|+.|+ .++...+.+++|+.|++++|. +..+|.. +.. .++|+.|++
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEe
Confidence 9999998887777888888888887 333334678899999999987 7777653 322 477999999
Q ss_pred cCCCHHHHHhhhhcccccccccceeeeccc
Q 041418 317 WWPQPELRQKLREFEDKEQQIPNRQSTGEM 346 (349)
Q Consensus 317 ~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~ 346 (349)
.+||.....-....+..++.+..+.+.+|.
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 999933222222267777778888877764
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.6e-17 Score=156.25 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc-------------CCcccCCCCCCCEEeecCCCCccc-chhHHhcCcC
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------------YPSGIENLFLLRYLKLNIPSLKSL-SSSLLSNLLN 185 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~~l-p~~if~~l~~ 185 (349)
++++.|.+.++.... ..+..+.+++.|+ .|..++++++|++|++++|.++.+ |..+ +++++
T Consensus 30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTT
T ss_pred CccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCccc
Confidence 678999988877653 2233445555554 256789999999999999999977 4555 99999
Q ss_pred CcEEeccCcCccc-cchh--hhccccchhhh---------------hCCCCCCeeecc
Q 041418 186 LYTLDMPFSYIDH-TVDE--FWKMKKLRHLN---------------FGLSCLKSLKLA 225 (349)
Q Consensus 186 L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~---------------~~l~~L~~L~l~ 225 (349)
|++|++++|.++. +|.. ++++++|++|+ +.+++|+.|+++
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 9999999997775 4554 88999999998 467889999887
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.2e-16 Score=153.38 Aligned_cols=148 Identities=21% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL 184 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~ 184 (349)
...+++++.|.+.++.....+ . +.+++.|+ ++. ++++++|++|++++|.++.+|. + ++++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCT
T ss_pred hhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCC
Confidence 445678888888777665321 1 34444444 333 7788888888888888887776 4 8888
Q ss_pred CCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCeeeccCC--------CCCCCccEEEEccC----
Q 041418 185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY---- 241 (349)
Q Consensus 185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~---- 241 (349)
+|++|++++|.+..+|. ++.+++|++|+ +.+++|+.|++++. ..+++|+.|++++|
T Consensus 135 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 135 NLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred CCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccc
Confidence 88888888887777764 66777776665 45566666666521 34556666666555
Q ss_pred ----CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418 242 ----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD 275 (349)
Q Consensus 242 ----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 275 (349)
..+++|+.|++++|.+... +.+..+++|+.|+
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred cccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence 2345555555555554432 2344444444444
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=1.8e-17 Score=151.00 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=138.5
Q ss_pred CCCCCCeeEEEeec-CCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCc-ccchhHHh
Q 041418 116 DDYDSQLHSFLCCS-PESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLS 181 (349)
Q Consensus 116 ~~~~~~lr~l~~~~-~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~ 181 (349)
...+++++.|.+.+ +.... ..+..+.+++.|+ +|..++++++|++|++++|.++ .+|..+ +
T Consensus 72 l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~ 146 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-S 146 (313)
T ss_dssp GGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-G
T ss_pred HhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-h
Confidence 56788999999985 55432 1223344444444 7889999999999999999998 788888 9
Q ss_pred cCcCCcEEeccCcCcc-ccchhhhccc-cchhhhhCCCCCCee---eccCCCCCCCccEEEEccC----------CCCCC
Q 041418 182 NLLNLYTLDMPFSYID-HTVDEFWKMK-KLRHLNFGLSCLKSL---KLANESKMPWLSKIVLAEY----------LFPHS 246 (349)
Q Consensus 182 ~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~~~l~~L~~L---~l~~~~~~~~L~~L~l~~~----------~~~~~ 246 (349)
++++|++|++++|.+. .+|..++.++ +|++|+-.-..+... .+ ..++ |+.|++++| ..+++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---ANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG---GGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH---hCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 9999999999999877 8899998877 777765000000000 00 2233 666666665 45677
Q ss_pred ccEEEEeecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418 247 LTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 247 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 318 (349)
|+.|++++|.+++.+ +.+..+++|++|+ ..+...+.+++|+.|++++|...+.+|. .+.+++|+.+++.+
T Consensus 223 L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300 (313)
T ss_dssp CSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred CCEEECCCCceeeec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcC
Confidence 777777777776544 3366677777776 1222235688999999999986668887 48899999999999
Q ss_pred CC
Q 041418 319 PQ 320 (349)
Q Consensus 319 ~~ 320 (349)
|+
T Consensus 301 N~ 302 (313)
T 1ogq_A 301 NK 302 (313)
T ss_dssp SS
T ss_pred CC
Confidence 88
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=3.5e-17 Score=163.20 Aligned_cols=223 Identities=14% Similarity=0.058 Sum_probs=141.5
Q ss_pred CCCCCCeeEEEeecCCCCCC--Cc-c----------hHHhhhc--cCcccc------------CCcccCCCCCCCEEeec
Q 041418 116 DDYDSQLHSFLCCSPESRHI--DP-I----------DWEKICG--MFKLLR------------YPSGIENLFLLRYLKLN 168 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~--~~-~----------~~~~~~~--~l~~L~------------lp~~i~~l~~L~~L~l~ 168 (349)
..++++++.|.+.++..... .. + .++..+. +++.|+ +|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 45688999999998876530 00 0 0233333 455444 78899999999999999
Q ss_pred CCC-Cc--ccchhHHhcC------cCCcEEeccCcCccccch--hhhccccchhhh-------------hCCCCCCeeec
Q 041418 169 IPS-LK--SLSSSLLSNL------LNLYTLDMPFSYIDHTVD--EFWKMKKLRHLN-------------FGLSCLKSLKL 224 (349)
Q Consensus 169 ~~~-l~--~lp~~if~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~-------------~~l~~L~~L~l 224 (349)
+|. ++ .+|..+ +++ ++|++|++++|.++.+|. .++++++|++|+ +.+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred CCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence 997 87 488887 776 889999999988888888 788888888887 22334444444
Q ss_pred cCC---------CCCC--------------------------CccEEEEccC----------C-------CCCCccEEEE
Q 041418 225 ANE---------SKMP--------------------------WLSKIVLAEY----------L-------FPHSLTHLSF 252 (349)
Q Consensus 225 ~~~---------~~~~--------------------------~L~~L~l~~~----------~-------~~~~L~~L~L 252 (349)
+++ ..++ +|+.|++++| . .+++|+.|++
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 411 2223 4455555444 1 2335556666
Q ss_pred eecCCCCCCcccccCCccccccc-------cccccc--------ccccccceeeeeccCCCCCCCcccC--CCCCCCEEE
Q 041418 253 SNTDRMDDPMPVLETLPLLQKAD-------FWTMGN--------AAMPKLECLIINPCAYLKKMPEHLW--CIKSLNKFD 315 (349)
Q Consensus 253 ~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~--------~~~~~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~ 315 (349)
++|.+...+...+..+++|+.|+ .++... ..+++|+.|++++|. +..+|..+. .+++|+.|+
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGID 519 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEE
Confidence 66655544444445566666665 111100 012278888888876 668888776 888888888
Q ss_pred ecCCCHHHHHhhhhcccccccccceeee
Q 041418 316 CWWPQPELRQKLREFEDKEQQIPNRQST 343 (349)
Q Consensus 316 l~~~~~~~~~~l~~~~~~i~~ip~i~~~ 343 (349)
+++|. +..+.........+..+.+.
T Consensus 520 Ls~N~---l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 520 LSYNS---FSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCSSC---CSSCCCGGGGCSSCCEEECC
T ss_pred CCCCC---CCCcChhhhcCCCCCEEECC
Confidence 88887 22243344555666666663
No 28
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.8e-17 Score=151.16 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=93.1
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCee
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSL 222 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L 222 (349)
..++++++|++|++++|.++.+++ + +.+++|++|++++|.++.+|. .++|++|+ ..+++|+.|
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~~~~L~~L 125 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI 125 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECCCSSCEEE
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccccCCCCEE
Confidence 456677777777777777765554 3 777777777777776666653 25555554 334555555
Q ss_pred eccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418 223 KLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------ 275 (349)
Q Consensus 223 ~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------ 275 (349)
+++++ ..+++|+.|++++| ..+++|+.|++++|.++.. +....+++|+.|+
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence 55521 23456666666655 2345666666666665543 2223355555555
Q ss_pred -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.++.....+++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 222223455666777776665 56666666666677777776666
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=2.6e-16 Score=151.05 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=145.1
Q ss_pred CCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEE
Q 041418 118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTL 189 (349)
Q Consensus 118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L 189 (349)
+++++|++.+.+......+. -..+.+++.|. +|. ++++++|++|++++|.++.+|. + +++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~---~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEE
T ss_pred HhccccEEecCCCCCccCcc---hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEE
Confidence 35689999998876653221 12244555554 444 8999999999999999998887 5 999999999
Q ss_pred eccCcCccccchhhhccccchhhh------------hCCCCCCeeeccCC-------CCCCCccEEEEccC--------C
Q 041418 190 DMPFSYIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY--------L 242 (349)
Q Consensus 190 ~l~~~~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~--------~ 242 (349)
++++|.++.+|. ++++++|++|+ +.+++|+.|.+.+. ..+++|+.|++++| .
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~ 196 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence 999999999886 89999999998 56788888877521 57788999999888 5
Q ss_pred CCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEe
Q 041418 243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDC 316 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 316 (349)
.+++|+.|++++|.+.+.+. ++.+++|+.|+ ........+++|+.|++++|. +..+++ +..+++|+.|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEEC
Confidence 67889999999998876543 67788888887 111223467788888888876 666665 777777777777
Q ss_pred cCCC
Q 041418 317 WWPQ 320 (349)
Q Consensus 317 ~~~~ 320 (349)
++|.
T Consensus 273 ~~n~ 276 (466)
T 1o6v_A 273 GANQ 276 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7765
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.2e-17 Score=161.31 Aligned_cols=158 Identities=18% Similarity=0.148 Sum_probs=74.0
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCee
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSL 222 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L 222 (349)
..++.+++|++|++++|.++.+++ + +.+++|++|++++|.++.+|.. ++|++|+ ..+++|+.|
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~~l~~L~~L 125 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI 125 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEECCCSSCEEE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCccccCCCCEE
Confidence 445555555555555555554443 3 5555555555555555554431 3444443 223444444
Q ss_pred eccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418 223 KLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------ 275 (349)
Q Consensus 223 ~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------ 275 (349)
+++++ ..+++|+.|++++| ..+++|+.|+|++|.+++. +....+++|+.|+
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCC
Confidence 44411 22344444444444 1344455555555544432 1222344444444
Q ss_pred -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
..+...+.+++|+.|++++|. +..+|..++.+++|+.|++++|+
T Consensus 204 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 112222344555555555544 44455555555555555555554
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=2.7e-17 Score=163.93 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=112.9
Q ss_pred CCc--ccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCccccchhhhcccc-chhhh-------------h
Q 041418 152 YPS--GIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKK-LRHLN-------------F 214 (349)
Q Consensus 152 lp~--~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~-------------~ 214 (349)
+|. .++++++|++|++++|.++ .+| .+ +++++|++|++++|.+..+|..++++++ |++|+ +
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 777 7888888999999888888 888 65 8888888888888877788888888888 88887 1
Q ss_pred --CCCCCCeeeccCC----------C-------CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccc
Q 041418 215 --GLSCLKSLKLANE----------S-------KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVL 265 (349)
Q Consensus 215 --~l~~L~~L~l~~~----------~-------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l 265 (349)
.+++|+.|+++++ . .+++|+.|++++| ..+++|+.|++++|.++..+...+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 1336777777622 1 4457888888877 246777777777777765443333
Q ss_pred cCC-------ccccccc-------ccccccc--cccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418 266 ETL-------PLLQKAD-------FWTMGNA--AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 266 ~~l-------~~L~~L~-------~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 318 (349)
... ++|+.|+ .++.... .+++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCS
T ss_pred ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCC
Confidence 322 2666665 2222222 56677777777765 555776666677777777744
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.3e-16 Score=157.92 Aligned_cols=200 Identities=20% Similarity=0.121 Sum_probs=155.9
Q ss_pred CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-------CCcccCCCCCCCEEeecCCCCccc---chhHHhcCc
Q 041418 115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------YPSGIENLFLLRYLKLNIPSLKSL---SSSLLSNLL 184 (349)
Q Consensus 115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------lp~~i~~l~~L~~L~l~~~~l~~l---p~~if~~l~ 184 (349)
....+++++.+.+.++.....+ .. .+.+++.|. .+..++.+++|++|++++|.++.+ |..+ +.++
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~lp-~~---~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~ 376 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQFP-TL---DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD-LGTN 376 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSCC-CC---CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH-HCCS
T ss_pred hccccccCCEEEcccccCcccc-cC---CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh-ccCC
Confidence 3455667777777776664322 11 334444444 123567889999999999988866 6666 9999
Q ss_pred CCcEEeccCcCccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEc
Q 041418 185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLA 239 (349)
Q Consensus 185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~ 239 (349)
+|++|++++|.+..+|..+..+++|++|+ +.+++|+.|++++. ..+++|+.|+++
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 99999999998888998888999999887 46788999988722 567899999998
Q ss_pred cC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCC
Q 041418 240 EY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKK 300 (349)
Q Consensus 240 ~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~ 300 (349)
+| ..+++|+.|++++|.+++.++..++.+++|+.|+ .. +...+.+++|+.|++++|. +..
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~ 535 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IET 535 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCC
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Ccc
Confidence 88 5678999999999999888878899999999998 11 2233567899999999987 889
Q ss_pred CCcccCCCC-CCCEEEecCCC
Q 041418 301 MPEHLWCIK-SLNKFDCWWPQ 320 (349)
Q Consensus 301 lp~~l~~l~-~L~~L~l~~~~ 320 (349)
+|.++..++ +|++|++++||
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCC
T ss_pred cCHhHhhhcccCcEEEccCCC
Confidence 998888887 59999998876
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=6.8e-17 Score=165.24 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=86.1
Q ss_pred CCc--ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhcccc-chhhh-------------hC
Q 041418 152 YPS--GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKK-LRHLN-------------FG 215 (349)
Q Consensus 152 lp~--~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~-------------~~ 215 (349)
+|. .++++++|++|++++|.++.+| .+ +++++|++|++++|.+..+|..++++++ |++|+ +.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 555 5666666666666666666666 44 6666666666666655566666666666 66665 11
Q ss_pred C--CCCCeeeccCC------C---------CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCccccc--
Q 041418 216 L--SCLKSLKLANE------S---------KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLE-- 266 (349)
Q Consensus 216 l--~~L~~L~l~~~------~---------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~-- 266 (349)
+ ++|+.|+++++ . .+++|+.|++++| ..+++|+.|+|++|.+...+...+.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 1 22455554411 0 1225556666555 2345566666666555533322222
Q ss_pred -----CCccccccc-------ccccccc--cccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418 267 -----TLPLLQKAD-------FWTMGNA--AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 267 -----~l~~L~~L~-------~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 318 (349)
++++|+.|+ .++.... .+++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence 122455544 1222222 45556666666654 444555555566666666654
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=2.8e-16 Score=155.54 Aligned_cols=45 Identities=29% Similarity=0.445 Sum_probs=27.4
Q ss_pred cccCCCCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCcccc
Q 041418 154 SGIENLFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHT 199 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~l 199 (349)
..++++++|++|++++|.++ .+|..+ +++++|++|++++|.++.+
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEE
T ss_pred cccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceec
Confidence 45666666666666666665 355555 6666666666666655444
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.2e-16 Score=144.85 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=141.0
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc---chhhhccccchhhh-------------hC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLN-------------FG 215 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~-------------~~ 215 (349)
+|..+. ++|++|++++|.++.+|..+|+++++|++|++++|.++.+ |..+..+++|++|+ ..
T Consensus 22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 555443 6899999999999999998779999999999999987765 67788899999998 56
Q ss_pred CCCCCeeeccCC-----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCC-CCcccccCCccccc
Q 041418 216 LSCLKSLKLANE-----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMD-DPMPVLETLPLLQK 273 (349)
Q Consensus 216 l~~L~~L~l~~~-----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~ 273 (349)
+++|++|+++++ ..+++|+.|++++| ..+++|+.|++++|.+.+ ..+..++.+++|+.
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence 788888888722 45678888888887 457888888888888765 34466778888888
Q ss_pred cc-------cc-ccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhh-ccccc-ccccceee
Q 041418 274 AD-------FW-TMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKE-QQIPNRQS 342 (349)
Q Consensus 274 L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i-~~ip~i~~ 342 (349)
|+ .. +...+.+++|+.|++++|. +..+|. .+..+++|+.|++++|+ +....+ .+... ..+..+.+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH---IMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC---CCBCSSSSCCCCCTTCCEEEC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC---CcccCHHHHHhhhccCCEEEc
Confidence 87 11 1123467888899998887 666654 57788899999998887 112111 33333 35566777
Q ss_pred ecccc
Q 041418 343 TGEMM 347 (349)
Q Consensus 343 ~~~~~ 347 (349)
.+|.+
T Consensus 256 ~~N~~ 260 (306)
T 2z66_A 256 TQNDF 260 (306)
T ss_dssp TTCCE
T ss_pred cCCCe
Confidence 77655
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2e-16 Score=151.26 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=150.1
Q ss_pred eeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418 122 LHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP 192 (349)
Q Consensus 122 lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~ 192 (349)
.+.+.+.+......+ .....+++.|. .|..|+++++|++|++++|.++.++...|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP----~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP----QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCC----SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccC----CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345555554443222 22334556555 46778999999999999999998876655899999999999
Q ss_pred CcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCC
Q 041418 193 FSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 193 ~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~ 260 (349)
+|.++.+|.. +..+++|++|+-.-..+..+.-..-..+++|+.|+++++ ..+++|+.|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9988888765 667777777761111222221000045667777777663 5788999999999998865
Q ss_pred CcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cc
Q 041418 261 PMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FE 331 (349)
Q Consensus 261 ~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~ 331 (349)
+.+..+++|+.|+ .. +.....+++|+.|++++|......|..+..+++|+.|++++|. +..+.. .+
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~ 286 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN---LSSLPHDLF 286 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTSS
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc---CCccChHHh
Confidence 4688889999888 11 2223568899999999988444445678899999999999987 223333 45
Q ss_pred cccccccceeeecccc
Q 041418 332 DKEQQIPNRQSTGEMM 347 (349)
Q Consensus 332 ~~i~~ip~i~~~~~~~ 347 (349)
..+..+..+.+.+|-+
T Consensus 287 ~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred ccccCCCEEEccCCCc
Confidence 5566777777777753
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=1e-16 Score=158.70 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=27.5
Q ss_pred cccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcccc---chhhhccccchhhh
Q 041418 154 SGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLN 213 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~ 213 (349)
..++.+++|++|++++|.+. .+|...|+++++|++|++++|.+..+ |..++.+++|++|+
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence 34444555555555555443 34433224455555555555544333 33344444444444
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=2.3e-16 Score=141.52 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=112.9
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC-cccc-chhhhccccchhhhhCCCCCCee---eccCCC
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY-IDHT-VDEFWKMKKLRHLNFGLSCLKSL---KLANES 228 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~-l~~l-p~~i~~L~~L~~L~~~l~~L~~L---~l~~~~ 228 (349)
..++.+++|++|++++|.++.++...|+++++|++|++++|. ++.+ |..+..+++|++|+-.-..+..+ .+ .
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~ 126 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF---R 126 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT---T
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh---h
Confidence 457777788888888887776643333778888888888874 7777 55566666666665111111111 01 4
Q ss_pred CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418 229 KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL 290 (349)
Q Consensus 229 ~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L 290 (349)
.+++|+.|++++| ..+++|+.|++++|.++..+...+..+++|+.|+ .. +...+.+++|+.|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 4666777777666 4577888888888888776666677888888877 11 1223567899999
Q ss_pred eeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418 291 IINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 291 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
++++|. +..+|. .+..+++|+.|++++|+
T Consensus 207 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 207 YLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred eCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 999987 777775 48899999999999987
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2e-16 Score=161.74 Aligned_cols=203 Identities=13% Similarity=0.064 Sum_probs=127.3
Q ss_pred CCCCCCeeEEEeecCCCCCC--C-cc----------hHHhhhc--cCcccc------------CCcccCCCCCCCEEeec
Q 041418 116 DDYDSQLHSFLCCSPESRHI--D-PI----------DWEKICG--MFKLLR------------YPSGIENLFLLRYLKLN 168 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~--~-~~----------~~~~~~~--~l~~L~------------lp~~i~~l~~L~~L~l~ 168 (349)
..++++++.|.+.++..... + .. .++..+. +++.|+ +|..++++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 45678888888888776530 0 00 0222222 444444 78888888888888888
Q ss_pred CCC-Ccc--cchhHHhcCc-------CCcEEeccCcCccccch--hhhccccchhhh------------hCCCCCCeeec
Q 041418 169 IPS-LKS--LSSSLLSNLL-------NLYTLDMPFSYIDHTVD--EFWKMKKLRHLN------------FGLSCLKSLKL 224 (349)
Q Consensus 169 ~~~-l~~--lp~~if~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~------------~~l~~L~~L~l 224 (349)
+|. ++. +|..+ ++++ +|++|++++|.+..+|. .++++++|++|+ +.+++|+.|++
T Consensus 524 ~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEEC
T ss_pred CCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEEC
Confidence 887 773 77776 6665 88888888887778887 778888887776 33445555555
Q ss_pred cCC---------CCCCC-ccEEEEccC---------C-------------------------------CCCCccEEEEee
Q 041418 225 ANE---------SKMPW-LSKIVLAEY---------L-------------------------------FPHSLTHLSFSN 254 (349)
Q Consensus 225 ~~~---------~~~~~-L~~L~l~~~---------~-------------------------------~~~~L~~L~L~~ 254 (349)
+++ ..+++ |+.|++++| . ..++|+.|++++
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 411 22334 555555544 0 112455555555
Q ss_pred cCCCCCCcccccCCccccccc-------cccccc--------ccccccceeeeeccCCCCCCCcccC--CCCCCCEEEec
Q 041418 255 TDRMDDPMPVLETLPLLQKAD-------FWTMGN--------AAMPKLECLIINPCAYLKKMPEHLW--CIKSLNKFDCW 317 (349)
Q Consensus 255 ~~l~~~~~~~l~~l~~L~~L~-------~~~~~~--------~~~~~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~l~ 317 (349)
|.+...+...+..+++|+.|+ .++... ..+++|+.|++++|. +..+|..+. .+++|+.|+++
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECC
T ss_pred CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeC
Confidence 555544433344566666666 111110 122388888888886 778888776 88889999988
Q ss_pred CCC
Q 041418 318 WPQ 320 (349)
Q Consensus 318 ~~~ 320 (349)
+|.
T Consensus 762 ~N~ 764 (876)
T 4ecn_A 762 YNC 764 (876)
T ss_dssp SSC
T ss_pred CCC
Confidence 886
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=8.4e-17 Score=148.85 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=144.2
Q ss_pred hccCcccc--------CC-cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhh
Q 041418 144 CGMFKLLR--------YP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLN 213 (349)
Q Consensus 144 ~~~l~~L~--------lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 213 (349)
..+++.|. +| ..++++++|++|++++|.++.++...|+++++|++|++++|.++.+|.. ++++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 34566655 44 4789999999999999999988665449999999999999999999877 78888888887
Q ss_pred ---hCCCCCCe-eeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc---
Q 041418 214 ---FGLSCLKS-LKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--- 275 (349)
Q Consensus 214 ---~~l~~L~~-L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--- 275 (349)
..++.+.. -.+ ..+++|+.|++++| ..+++|+.|++++|.+.+..+..++.+++|++|+
T Consensus 131 L~~n~l~~l~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 131 LLGNPYKTLGETSLF---SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CTTCCCSSSCSSCSC---TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCCCcccCchhhh---ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 22222222 011 56788888888876 4578899999999998887778888899999887
Q ss_pred -c---ccc-ccccccccceeeeeccCCCCCC--------------------------------CcccCCCCCCCEEEecC
Q 041418 276 -F---WTM-GNAAMPKLECLIINPCAYLKKM--------------------------------PEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 276 -~---~~~-~~~~~~~L~~L~l~~c~~l~~l--------------------------------p~~l~~l~~L~~L~l~~ 318 (349)
. .+. ..+.+++|+.|++++|. +..+ |.+++.+++|+.|++++
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred CccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 1 110 01246889999999887 4443 33466788999999998
Q ss_pred CCHHHHHhhhhc-ccccccccceeeeccccc
Q 041418 319 PQPELRQKLREF-EDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 319 ~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~~ 348 (349)
|. +..+... +.....+..+.+.+|.++
T Consensus 287 N~---l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 287 NQ---LKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SC---CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC---CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 87 2244443 466777778888877653
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.6e-16 Score=136.78 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=96.4
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCC
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPW 232 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~ 232 (349)
..++++++|++|++++|.++.+|..+|+++++|++|++++|.++.+|.. +..+++|++| +++++ .
T Consensus 55 ~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------~l~~n----~ 120 (270)
T 2o6q_A 55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL----------RLDRN----Q 120 (270)
T ss_dssp TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE----------ECCSS----C
T ss_pred HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE----------ECCCC----c
Confidence 3567777777777777777777776666777777777777777776653 2434433333 32100 0
Q ss_pred ccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcc
Q 041418 233 LSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEH 304 (349)
Q Consensus 233 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~ 304 (349)
+..+.-.....+++|+.|++++|.+...+...++.+++|+.|+ .+.. ....+++|+.|++++|. +..+|..
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 199 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEG 199 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHH
Confidence 0000000003456667777777766666655566666666666 1111 12457899999999986 7788764
Q ss_pred -cCCCCCCCEEEecCCC
Q 041418 305 -LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 305 -l~~l~~L~~L~l~~~~ 320 (349)
+..+++|+.|++++||
T Consensus 200 ~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEecCCC
Confidence 7889999999999876
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=1.3e-16 Score=156.05 Aligned_cols=61 Identities=26% Similarity=0.195 Sum_probs=34.0
Q ss_pred CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc--cchhhhccccchhhh
Q 041418 153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN 213 (349)
Q Consensus 153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~ 213 (349)
|.+++++++|++|++++|.++.+|+..|+++++|++|++++|.++. +|..++++++|++|+
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 3455666666666666666665555533666666666666665543 244455555555554
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=3.3e-16 Score=140.42 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=142.4
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh-hCCCCCCee---eccC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN-FGLSCLKSL---KLAN 226 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~-~~l~~L~~L---~l~~ 226 (349)
+|..+ .++|++|++++|.++.+|...|+++++|++|++++|.++.+ |..++.+++|++|+ ..-..+..+ .+
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-- 101 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-- 101 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--
Confidence 45433 46899999999999999876559999999999999988888 66788888888886 111112222 12
Q ss_pred CCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccc
Q 041418 227 ESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLE 288 (349)
Q Consensus 227 ~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~ 288 (349)
..+++|+.|++++| ..+++|+.|++++|.+...+...++.+++|+.|+ .+.. ....+++|+
T Consensus 102 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 102 -HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp -TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 56789999999887 5678999999999999988877899999999998 2221 135678999
Q ss_pred eeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418 289 CLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 289 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
.|++++|......|..+..+++|+.|++++|. +..+.. .+....++..+.+.+|.+
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN---LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCc---CCcCCHHHcccCcccCEEeccCCCc
Confidence 99999998444447789999999999999987 222222 345556666777777654
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=3.1e-16 Score=140.00 Aligned_cols=181 Identities=19% Similarity=0.164 Sum_probs=127.9
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT 199 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l 199 (349)
++++.|.+.++..... .+..++++++|++|++++|.++.++...|+++++|++|++++|.++.+
T Consensus 28 ~~l~~L~ls~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL----------------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TTCCEEECTTCCCCEE----------------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCccEEECCCCccccc----------------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 4577777776655320 223677888888888888888887765558888888888888877777
Q ss_pred c-hhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCccc
Q 041418 200 V-DEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPV 264 (349)
Q Consensus 200 p-~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~ 264 (349)
| ..+.++++|++|+ ..+..+....+ ..+++|+.|++++| ..+++|+.|++++|.++..+...
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCC---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred ChhhhcCCccccEEECCCCCccccCchhc---ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 5 4567777777775 22222222222 56677777777766 44689999999999998877777
Q ss_pred ccCCcccccc----c-------ccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 265 LETLPLLQKA----D-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 265 l~~l~~L~~L----~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
+..+++|+.| + ..........+|+.|++++|. +..+|.. +..+++|+.|+++++|
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 7777777633 3 111111234489999999987 8888875 5889999999999654
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=147.84 Aligned_cols=190 Identities=16% Similarity=0.138 Sum_probs=139.9
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
.+..++++++|++|++++|.++.++...|.++++|++|++++|.++.+|. .+..+++|++|+-.-..+..+.-..-..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 34678999999999999999998887666999999999999999999976 47777777777611112222210000456
Q ss_pred CCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceee
Q 041418 231 PWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLI 291 (349)
Q Consensus 231 ~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~ 291 (349)
++|+.|+++++ ..+++|+.|++++|.++..+ .+..+++|+.|+ .. +.....+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 77777777764 56889999999999988654 688889999888 11 12235678999999
Q ss_pred eeccCCCCCC-CcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418 292 INPCAYLKKM-PEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 292 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
+++|. +..+ |..+..+++|+.|++++|. +..+.. .+..+.++..+.+.+|-+
T Consensus 238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNN---LTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCC-CCEECTTSSTTCTTCCEEECTTSC---CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCc-eeEEChhhhcCCCCCCEEECCCCC---CCccChhHhccccCCCEEEcCCCCc
Confidence 99987 5555 4568899999999999987 223333 455667777777777754
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=151.00 Aligned_cols=194 Identities=17% Similarity=0.107 Sum_probs=134.0
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
++++.|.+.++.... ..+..+.++..|+ .|.+++++++|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCS
T ss_pred ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCcc
Confidence 789999999887753 2233455555554 478899999999999999999999875 799999
Q ss_pred EEeccCcCccc--cchhhhccccchhhh-----------hCCCCC--CeeeccCC-------------------------
Q 041418 188 TLDMPFSYIDH--TVDEFWKMKKLRHLN-----------FGLSCL--KSLKLANE------------------------- 227 (349)
Q Consensus 188 ~L~l~~~~l~~--lp~~i~~L~~L~~L~-----------~~l~~L--~~L~l~~~------------------------- 227 (349)
+|++++|.+.. +|..++++++|++|+ +.+++| +.|++++.
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999998776 578899999999998 345566 66655410
Q ss_pred -------------CCCCCccEEEEcc------------------------------C-------------CCCCCccEEE
Q 041418 228 -------------SKMPWLSKIVLAE------------------------------Y-------------LFPHSLTHLS 251 (349)
Q Consensus 228 -------------~~~~~L~~L~l~~------------------------------~-------------~~~~~L~~L~ 251 (349)
..+++|+.+++++ + ...++|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 0123333333333 2 0134778888
Q ss_pred EeecCCCCCCcccc-----cCCccccccc----cc--c------------------------cc--cccccccceeeeec
Q 041418 252 FSNTDRMDDPMPVL-----ETLPLLQKAD----FW--T------------------------MG--NAAMPKLECLIINP 294 (349)
Q Consensus 252 L~~~~l~~~~~~~l-----~~l~~L~~L~----~~--~------------------------~~--~~~~~~L~~L~l~~ 294 (349)
+++|.+.+..+..+ +.+++|+.++ .. + .. .+.+++|+.|++++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 88887765444444 5555555544 00 0 00 14677888888888
Q ss_pred cCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 295 CAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 295 c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
|...+.+|..++.+++|++|++++|.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred CccChhhhhhhccCCCCCEEEccCCc
Confidence 87555577778888888888888887
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.7e-15 Score=136.41 Aligned_cols=173 Identities=16% Similarity=0.100 Sum_probs=101.3
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
.++++++.+.+.++.....+.. ...+++.|. .|..+..+++|++|++++|.++.+|.. +.+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 3456677777766555421111 112222222 223444455555555555555544432 3445555
Q ss_pred EEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEEEeecCC
Q 041418 188 TLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDR 257 (349)
Q Consensus 188 ~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l 257 (349)
+|++++|.++.+|..+.. +++|+.|++++| ..+++|+.|++++|.+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQT------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp EEECCSSCCSSCCCCTTT------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhcc------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 555555544444444433 334444444444 4456677777777777
Q ss_pred CCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 258 MDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 258 ~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
...+...+..+++|+.|+ .++.. ...+++|+.|++++|. +..+|.++...++|+.++++++|
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 666666666667776666 11111 1457899999999987 88999999999999999999877
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=5.6e-16 Score=140.75 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=119.3
Q ss_pred CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418 118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
++++++.|.+.++.... +| .++.+++|++|++++|.++.+|. + +++++|++|++++|.++
T Consensus 39 ~l~~L~~L~l~~~~i~~-----------------l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-----------------IE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCS
T ss_pred HcCCcCEEEeeCCCccC-----------------ch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCC
Confidence 45678888887765542 22 45667777777777777777776 4 77777777777777777
Q ss_pred ccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCccccc
Q 041418 198 HTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLE 266 (349)
Q Consensus 198 ~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~ 266 (349)
.+| .++.+++|++|+ ..++.+.. + ..+++|+.|++++| ..+++|+.|++++|.+...+ .+.
T Consensus 99 ~~~-~~~~l~~L~~L~l~~n~l~~~~~--l---~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~ 170 (308)
T 1h6u_A 99 NVS-AIAGLQSIKTLDLTSTQITDVTP--L---AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLA 170 (308)
T ss_dssp CCG-GGTTCTTCCEEECTTSCCCCCGG--G---TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGT
T ss_pred Cch-hhcCCCCCCEEECCCCCCCCchh--h---cCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh--hhc
Confidence 765 366666666665 22222221 1 45666777776666 45677888888888776543 277
Q ss_pred CCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 267 TLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 267 ~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+++|+.|+ .-......+++|+.|++++|. +..+|+ +..+++|+.|++++|+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe
Confidence 777777777 111123578899999999987 778875 8899999999998877
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=2.9e-15 Score=147.15 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=42.5
Q ss_pred cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhc-ccccccccceeeecccc
Q 041418 285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREF-EDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~ 347 (349)
++|+.|++++|. +..+|.++..+++|+.|++++|. +..+... +....++..+.+.+|.+
T Consensus 450 ~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 450 PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ---LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC---CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC---CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 578888888875 77888878888888888888887 2234443 55666666777777754
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.64 E-value=3e-16 Score=157.42 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=37.2
Q ss_pred CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhh
Q 041418 153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLN 213 (349)
Q Consensus 153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~ 213 (349)
|..++++++|++|++++|.++.+|...|+++++|++|++++|.+..+| ..++++++|++|+
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 445566666666666666666666543366666666666666555554 3456666666665
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=2.4e-15 Score=144.07 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=105.1
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcE
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYT 188 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~ 188 (349)
.++++++.|.+.++.....+ .+ ..+.+++.|. +| ++.+++|++|++++|.++.+| + +++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccCh--hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCE
Confidence 34678888888887665321 11 1123333333 43 788888999999998888876 4 88889999
Q ss_pred EeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCC
Q 041418 189 LDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 189 L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~ 260 (349)
|++++|.++.+| ++.+++|++|+-.-.++..+.+ ..+++|+.|++++| ..+++|+.|++++|.+++.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l---~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDV---SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCC---TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceecc---ccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence 999988888876 7788888888711111222222 34455555555444 3345555555555555443
Q ss_pred CcccccCCccccccc----cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 261 PMPVLETLPLLQKAD----FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 261 ~~~~l~~l~~L~~L~----~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+ ++.+++|+.|. .+ ..+.+.+++|+.|++++|. +..+| ++.+++|+.|++++|.
T Consensus 186 ~---l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 186 D---VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred c---cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence 2 44444444444 00 0012344555555555544 44444 4445555555555443
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=150.75 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCc-ccCCCCCCCEEeecCCCCcc--cchhHHh
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPS-GIENLFLLRYLKLNIPSLKS--LSSSLLS 181 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~-~i~~l~~L~~L~l~~~~l~~--lp~~if~ 181 (349)
...++++|.|.+.++.... ..+..|.+++.|+ +|. .++++++|++|++++|.++. +|..+ +
T Consensus 72 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~ 146 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-S 146 (570)
T ss_dssp TTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-G
T ss_pred ccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-c
Confidence 3456666777666655432 1222334444443 332 47777888888888887764 57776 7
Q ss_pred cCcCCcEEeccCcCccccc
Q 041418 182 NLLNLYTLDMPFSYIDHTV 200 (349)
Q Consensus 182 ~l~~L~~L~l~~~~l~~lp 200 (349)
++++|++|++++|.+..+|
T Consensus 147 ~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 147 NLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp GCTTCCEEECTTSCCCEEC
T ss_pred ccCCCCEEeCcCCccceec
Confidence 8888888888877666553
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=3.5e-16 Score=142.61 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=147.0
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCCCCCCeeeccC
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGLSCLKSLKLAN 226 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l~~L~~L~l~~ 226 (349)
+..+++|++|++++|.++.+++..|+++++|++|++++|.+..+++ +..+++|++|+ ...++|+.|++++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 4556789999999999998876555999999999999998887776 88999999998 4457888888873
Q ss_pred C-------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccc-cCCccccccc------ccccccc
Q 041418 227 E-------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVL-ETLPLLQKAD------FWTMGNA 282 (349)
Q Consensus 227 ~-------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~------~~~~~~~ 282 (349)
+ ..+++|+.|++++| ..+++|+.|++++|.+...++..+ ..+++|++|+ .......
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 188 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence 2 55778999999888 346889999999999887665555 4678888887 1112223
Q ss_pred cccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418 283 AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 283 ~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
.+++|+.|++++|. +..+|+.+..+++|+.|++++|. +..+...+.....+..+.+.+|.++
T Consensus 189 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK---LVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC---CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc---ccchhhHhhcCCCCCEEEccCCCcc
Confidence 58899999999987 88888889999999999999987 2244445666677777888877654
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=2.9e-16 Score=142.85 Aligned_cols=163 Identities=17% Similarity=0.078 Sum_probs=103.1
Q ss_pred CCccc--CCCCCCCEEeecCCCCcccchhHHhcC-----cCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCC---
Q 041418 152 YPSGI--ENLFLLRYLKLNIPSLKSLSSSLLSNL-----LNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLK--- 220 (349)
Q Consensus 152 lp~~i--~~l~~L~~L~l~~~~l~~lp~~if~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~--- 220 (349)
+|..+ +.+++|++|++++|.++.+|..+ +.+ ++|++|++++|.+..+| ..++++++|++|+-.-.++.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 45554 77788888888888887777655 666 78888888888777775 55666666665540000000
Q ss_pred ----eeeccCCCCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCC-cccccCCccccccc----ccc
Q 041418 221 ----SLKLANESKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD----FWT 278 (349)
Q Consensus 221 ----~L~l~~~~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~----~~~ 278 (349)
.+.+ ..+++|+.|++++| ..+++|+.|++++|.+.+.+ .+.+..+++|++|+ .+.
T Consensus 190 ~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 190 GLISALCP---LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHSCT---TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHHHh---ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 0011 45677888888777 24578888888888887754 34555566666666 100
Q ss_pred -cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 279 -MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 279 -~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+...+++|+.|++++|. +..+|. +..+++|++|++++++
T Consensus 267 ~ip~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhhhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 011112567777777765 666665 6677777777777766
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=146.00 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=40.7
Q ss_pred cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhc-ccccccccceeeeccccc
Q 041418 285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREF-EDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~~ 348 (349)
++|+.|++++|. +..+|.++..+++|++|++++|. +..+... +....++..+.+.+|.++
T Consensus 421 ~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ---LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc---CCccCHHHhccCCcccEEECcCCCCc
Confidence 567777777775 66778777778888888888876 2234333 555666667777777653
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=154.98 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=48.5
Q ss_pred CCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeee
Q 041418 231 PWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLII 292 (349)
Q Consensus 231 ~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l 292 (349)
++|+.|++++| ..+++|+.|++++|.+.+.+...++.+++|++|+ .. +...+.+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 34555555554 3455566666666665555555555566666555 11 112234556666666
Q ss_pred eccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418 293 NPCAYLKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 293 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
++|. +..+|. .+..+++|+.|++++|.
T Consensus 346 ~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 346 QKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 6654 444443 35556666666666665
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=2e-15 Score=149.58 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CC-cccCCCCCCCEEeecCCCCcccchhHHhcC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNL 183 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l 183 (349)
..+++++|.|.+.++.... ..+..|.+++.|+ +| ..|+++++|++|++++|.++.+|+..|+++
T Consensus 72 f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred HhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 3455666666666655432 2222333333333 33 346666666666666666666665544666
Q ss_pred cCCcEEeccCcCccc--cchhhhccccchhhh
Q 041418 184 LNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN 213 (349)
Q Consensus 184 ~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~ 213 (349)
++|++|++++|.+.. +|..++.+++|++|+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhc
Confidence 666666666665543 355566666666554
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=5.2e-16 Score=149.82 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=146.2
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCCCCCCeeeccCC-
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGLSCLKSLKLANE- 227 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l~~L~~L~l~~~- 227 (349)
.+++|++|++++|.++.+|+..|+++++|++|++++|.+..+++ ++.+++|++|+ ...++|+.|+++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 34489999999999998876545999999999999998887765 88999999998 34578888888732
Q ss_pred ------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCccccc-CCccccccc------ccccccccc
Q 041418 228 ------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLE-TLPLLQKAD------FWTMGNAAM 284 (349)
Q Consensus 228 ------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~------~~~~~~~~~ 284 (349)
..+++|+.|++++| ..+++|+.|++++|.+++.++..+. .+++|+.|+ .-......+
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l 190 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccC
Confidence 55788999999888 4578899999999998886666665 788888888 111223458
Q ss_pred cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418 285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
++|+.|++++|. +..+|+.++.+++|+.|++++|. +..+...+.....+..+.+.+|.++
T Consensus 191 ~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK---LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC---CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc---CcccchhhccCCCCCEEEcCCCCCc
Confidence 899999999987 88888889999999999999987 2234445556667777777777654
No 59
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.63 E-value=2.5e-17 Score=161.28 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=81.2
Q ss_pred HhhHHHHHhhhCCCCCCchhHHh-----------HhccCCCCceecHHHHHHHHHHc--CCCCC-----CHHHHHHHHHH
Q 041418 4 TMSLGLQCIIYCMSPFCLKPCFL-----------YFSVFPAHLEISTRHVYQLWIAE--GFIED-----NNEATAKKYLE 65 (349)
Q Consensus 4 ~~i~~~L~lSY~~L~~~lk~cFl-----------~~a~Fp~~~~i~~~~Li~~wia~--g~i~~-----~~~~~~~~~~~ 65 (349)
++|.++|++||++||+++|.||+ |||+||+|+.|+ +++|+|+ ||+.. +.+++++ ||+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~ 435 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK 435 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence 45777899999999999999999 999999999999 8999999 99975 4788888 999
Q ss_pred HHHhCCceeeeecCCCCceeeEEeChhHHHHHHHhhcccCc
Q 041418 66 QLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEF 106 (349)
Q Consensus 66 ~L~~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~~~~~~ 106 (349)
+|+++||++....+ ...+|+|||+||++|++++++++.
T Consensus 436 ~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 436 RLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999987643 336799999999999999987765
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=7.1e-15 Score=147.41 Aligned_cols=189 Identities=19% Similarity=0.214 Sum_probs=109.0
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc----------------------------Ccccc-chhhhc
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS----------------------------YIDHT-VDEFWK 205 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~----------------------------~l~~l-p~~i~~ 205 (349)
.++.+++|++|++++|.++.+++..|+++++|++|++++| .+..+ |..++.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 4455566666666666665554443355555555555443 33333 334555
Q ss_pred cccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC------------CCCCCcc
Q 041418 206 MKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY------------LFPHSLT 248 (349)
Q Consensus 206 L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~------------~~~~~L~ 248 (349)
+++|+.|+ ..+++|+.|+++++ ..+++|+.|+++++ ..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 66666655 34556666666521 34566777776665 3456788
Q ss_pred EEEEeecCCCCCCcccccCCccccccc----ccc------------cccccccccceeeeeccCCCCCCCcc-cCCCCCC
Q 041418 249 HLSFSNTDRMDDPMPVLETLPLLQKAD----FWT------------MGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSL 311 (349)
Q Consensus 249 ~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~------------~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L 311 (349)
.|++++|.++..+...++.+++|+.|+ .+. ...+.+++|+.|++++|. +..+|.. ++.+++|
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCc
Confidence 888888887777666677777777777 110 002456777777777765 6677753 6777777
Q ss_pred CEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418 312 NKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 312 ~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
+.|++++|. +..+.+ .+.....+..+.+.+|.+
T Consensus 563 ~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 563 KIIDLGLNN---LNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CEEECCSSC---CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ceeECCCCC---CCcCCHhHhCCCCCCCEEECCCCcC
Confidence 777777765 122222 233444444444444443
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=7.4e-15 Score=140.61 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=30.4
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
++++++|++|++++|.++.+| + +++++|++|++++|.++.+| ++.+++|++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCcCCEEECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 555666666666666666554 3 56666666666666555553 44555555444
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1e-15 Score=138.97 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=135.3
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCC
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPW 232 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~ 232 (349)
..++++|++|++++|.++.+| .+ ..+++|++|++++|.+..+|. +..+++|++|+ ..++.+.. + ..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~---~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA--I---AGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG--G---TTCTT
T ss_pred HHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchh--h---cCCCC
Confidence 445788999999999999998 56 999999999999999999988 88888888887 22333322 2 67888
Q ss_pred ccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCC
Q 041418 233 LSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYL 298 (349)
Q Consensus 233 L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l 298 (349)
|+.|++++| ..+++|+.|++++|.+...+ .++.+++|+.|+ .-......+++|+.|++++|. +
T Consensus 109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l 185 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-I 185 (308)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-C
T ss_pred CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc-c
Confidence 899988888 67899999999999987654 388889999888 111224678999999999987 8
Q ss_pred CCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418 299 KKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 299 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~ 347 (349)
..+|. +..+++|++|++++|.- ..+. ......++..+.+.+|.+
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l---~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQI---SDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCC---CBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CcChh-hcCCCCCCEEEccCCcc---Cccc-cccCCCCCCEEEccCCee
Confidence 88886 88999999999999972 1222 233444555555555544
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=6.6e-15 Score=132.53 Aligned_cols=183 Identities=18% Similarity=0.148 Sum_probs=126.9
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCCeeeccCCCCCCCcc
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLS 234 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~ 234 (349)
++++++++.++++++.++.+|..+ . +++++|++++|.++.++ ..+.++++|++|+-.-..+..+... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 566677777777777777777655 2 56777777777666663 4466666666555111222222221 4566677
Q ss_pred EEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCC
Q 041418 235 KIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAY 297 (349)
Q Consensus 235 ~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~ 297 (349)
.|++++| ..+++|+.|++++|.++..+...++.+++|+.|+ ..+.. ...+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~- 159 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN- 159 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-
Confidence 7777766 5688999999999999988888899999999998 22111 2457899999999987
Q ss_pred CCCCCcc-cCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418 298 LKKMPEH-LWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 298 l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~ 347 (349)
+..+|.+ +..+++|+.|++++|. +..+.........+..+.+.+|-+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~---l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENS---LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCc---CCccChhhcccccCCeEEeCCCCc
Confidence 8889875 4779999999999987 224444444445666677776654
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=149.63 Aligned_cols=224 Identities=18% Similarity=0.127 Sum_probs=142.4
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcc-cchh-HHh
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKS-LSSS-LLS 181 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~-lp~~-if~ 181 (349)
...++++|.|.+.++... ....+..|.+++.|+ .|.+|+++++|++|++++|.++. +|.. .|+
T Consensus 44 ~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred CcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 456777777777766332 112233444444444 46777778888888888777764 4443 227
Q ss_pred cCcCCcEEeccCcCcccc--chhhhccccchhhh--------------hCC--CCCCeeeccCC----------CCCC--
Q 041418 182 NLLNLYTLDMPFSYIDHT--VDEFWKMKKLRHLN--------------FGL--SCLKSLKLANE----------SKMP-- 231 (349)
Q Consensus 182 ~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~--------------~~l--~~L~~L~l~~~----------~~~~-- 231 (349)
++++|++|++++|.+..+ |..++++++|++|+ +.+ ++|+.|+++++ ..++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 777888888877766555 24577777777776 112 56666665511 1122
Q ss_pred ----CccEEEEccCC------------------------------------------------CCCCccEEEEeecCCCC
Q 041418 232 ----WLSKIVLAEYL------------------------------------------------FPHSLTHLSFSNTDRMD 259 (349)
Q Consensus 232 ----~L~~L~l~~~~------------------------------------------------~~~~L~~L~L~~~~l~~ 259 (349)
.|+.|++++|. ..++|+.|++++|.+..
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 26666666550 12678899999998887
Q ss_pred CCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCCCHHHHHhhhh-
Q 041418 260 DPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWPQPELRQKLRE- 329 (349)
Q Consensus 260 ~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~l~~- 329 (349)
.+...++.+++|+.|+ .. +...+.+++|+.|++++|. +..+ |..+..+++|+.|++++|. +..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~---i~~~~~~ 356 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNH---IAIIQDQ 356 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCC---CCCCCSS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCC---CCccChh
Confidence 7777888888998888 11 1223567889999999987 5555 6678889999999999886 222222
Q ss_pred cccccccccceeeeccc
Q 041418 330 FEDKEQQIPNRQSTGEM 346 (349)
Q Consensus 330 ~~~~i~~ip~i~~~~~~ 346 (349)
.+.....+..+.+.+|.
T Consensus 357 ~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSCCCCCEEEEETCC
T ss_pred hhcCCCCCCEEECCCCC
Confidence 34444455555555544
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=5.9e-15 Score=131.60 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=139.7
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+. ++|++|++++|.++.+|...|+++++|++|++++|.++.+|. .+.++++|++|+-.-..+..+....-..+
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 666554 579999999999999887545999999999999999888875 57777777777622222333221000567
Q ss_pred CCccEEEEccC----------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------ccc-cccccccccc---
Q 041418 231 PWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FWT-MGNAAMPKLE--- 288 (349)
Q Consensus 231 ~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~--- 288 (349)
++|+.|++++| ..+++|+.|++++|.+.... +..++.+++|+.|+ .+. .....+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 78888888877 56789999999999998754 57889999999998 111 1123455566
Q ss_pred -eeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418 289 -CLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 289 -~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~ 348 (349)
.|++++|. +..+|.......+|+.|++++|. +..+.. .+.....+..+.+.+|.++
T Consensus 180 l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSSC-CCEECTTSSCSCCEEEEECCSSC---CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeeecCCCc-ccccCccccCCCcccEEECCCCc---eeecCHhHhcccccccEEEccCCccc
Confidence 88999987 88888777777799999999987 233433 3466777778888877654
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=7.5e-15 Score=144.15 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
++++.|.+.++...... +..+.+++.|+ .|+.|+++++|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCS
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCC
Confidence 78899998888775422 23444444444 467788888888888888888888874 788888
Q ss_pred EEeccCcCccccc--hhhhccccchhhh
Q 041418 188 TLDMPFSYIDHTV--DEFWKMKKLRHLN 213 (349)
Q Consensus 188 ~L~l~~~~l~~lp--~~i~~L~~L~~L~ 213 (349)
+|++++|.++.+| ..++++++|++|+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEe
Confidence 8888888777754 6788888888887
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.8e-14 Score=128.29 Aligned_cols=169 Identities=22% Similarity=0.212 Sum_probs=97.4
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI 196 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l 196 (349)
..+++++.+.+.++... -.++++.+++|++|++++|.++.++ .+ +++++|++|++++|.+
T Consensus 38 ~~l~~L~~L~l~~~~i~------------------~~~~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK------------------SVQGIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTTCCEEECTTSCCC------------------CCTTGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCC
T ss_pred ccccceeeeeeCCCCcc------------------cccccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCcc
Confidence 34567788877776554 1234666777888888888777764 44 7778888888888877
Q ss_pred cccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418 197 DHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD 275 (349)
Q Consensus 197 ~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 275 (349)
+.+|.. ++++++|++|+-.-.++..+.- . ....+++|+.|++++|.+++.+...++.+++|+.|+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPD---G-----------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCT---T-----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCH---H-----------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 777654 3444444444300011111100 0 002233444444444444433333344444444444
Q ss_pred -------ccccc-cccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418 276 -------FWTMG-NAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 276 -------~~~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
..... .+.+++|+.|++++|. +..+|+ .++.+++|+.|++++|+
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 11110 1467889999999987 666665 47889999999999876
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=3.5e-15 Score=130.26 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=81.8
Q ss_pred ccCCCCCCCEEeecCCC-CcccchhHHhcCcCCcEEeccC-cCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418 155 GIENLFLLRYLKLNIPS-LKSLSSSLLSNLLNLYTLDMPF-SYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMP 231 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~-l~~lp~~if~~l~~L~~L~l~~-~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~ 231 (349)
.++++++|++|++++|. ++.+|...|+++++|++|++++ |.++.+|. .+..+ +
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l------------------------~ 105 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL------------------------P 105 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC------------------------T
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC------------------------C
Confidence 45555555555555554 5555543335555555555555 45555543 23333 3
Q ss_pred CccEEEEccC--------CCCCCcc---EEEEeec-CCCCCCcccccCCcccc-ccc-------ccccccccccccceee
Q 041418 232 WLSKIVLAEY--------LFPHSLT---HLSFSNT-DRMDDPMPVLETLPLLQ-KAD-------FWTMGNAAMPKLECLI 291 (349)
Q Consensus 232 ~L~~L~l~~~--------~~~~~L~---~L~L~~~-~l~~~~~~~l~~l~~L~-~L~-------~~~~~~~~~~~L~~L~ 291 (349)
+|+.|++++| ..+++|+ .|++++| .++..+...+..+++|+ .|+ .++......++|+.|+
T Consensus 106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence 4444444443 2344444 7777777 66666656677777777 666 1111111225788888
Q ss_pred eeccCCCCCCCc-ccCCC-CCCCEEEecCCC
Q 041418 292 INPCAYLKKMPE-HLWCI-KSLNKFDCWWPQ 320 (349)
Q Consensus 292 l~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~ 320 (349)
+++|+.++.+|. .+..+ ++|+.|++++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 888755777764 46677 888888888876
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=4.6e-15 Score=132.18 Aligned_cols=175 Identities=21% Similarity=0.163 Sum_probs=120.9
Q ss_pred CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418 115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~ 194 (349)
....+++++.|.+.++.... ++.++.+++|++|++++|.++.+|...|+++++|++|++++|
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHD------------------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCC------------------CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccccCCCCcEEECCCCCCCC------------------chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 34567889999998876652 134667778888888888888777765577888888888888
Q ss_pred Cccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcc
Q 041418 195 YIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMP 263 (349)
Q Consensus 195 ~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~ 263 (349)
.++.+|.. ++.+++|++|+-.-.++..+.-..-..+++|+.|++++| ..+++|+.|++++|.+.+.+..
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 77777654 466666666651111222221000045667777777766 4578899999999998887777
Q ss_pred cccCCccccccc----ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418 264 VLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS 310 (349)
Q Consensus 264 ~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~ 310 (349)
.++.+++|+.|+ .|. +.+++|+.++++.|...+.+|.+++.++.
T Consensus 200 ~~~~l~~L~~L~l~~N~~~---~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWD---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCBC---CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHhCCcCCCEEEccCCCcc---ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 788888888877 232 45778888888888877788887776654
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=145.93 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=33.4
Q ss_pred CCCccEEEEeecCCCCCCcccccCCccccccc----c-----cccccccccccceeeeeccCCCCCCCcccCCCCCCCEE
Q 041418 244 PHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----F-----WTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKF 314 (349)
Q Consensus 244 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~-----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 314 (349)
+++|+.|++++|.+....+..++.+++|+.|+ . .+...+.+++|+.|++++|...+..|..++.+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 34455555555544444444444444454444 0 11112234445555555544222224444445555555
Q ss_pred EecCCC
Q 041418 315 DCWWPQ 320 (349)
Q Consensus 315 ~l~~~~ 320 (349)
++++|.
T Consensus 500 ~l~~n~ 505 (570)
T 2z63_A 500 NMASNQ 505 (570)
T ss_dssp ECCSSC
T ss_pred eCCCCc
Confidence 555443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.5e-14 Score=128.60 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=126.5
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+. +++++|++++|.++.+|...|+++++|++|++++|.++.+|..+ .+++ +|++|++++
T Consensus 31 ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~----------~L~~L~l~~---- 94 (270)
T 2o6q_A 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK----------NLETLWVTD---- 94 (270)
T ss_dssp CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT----------TCCEEECCS----
T ss_pred cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC----------CCCEEECCC----
Confidence 555444 57999999999999888755589999999999999888888764 4344 344444420
Q ss_pred CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCCCCCCC
Q 041418 231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAYLKKMP 302 (349)
Q Consensus 231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~l~~lp 302 (349)
..+..+.......+++|+.|++++|.++..+...++.+++|++|+ ..+.. .+.+++|+.|++++|. +..+|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeC
Confidence 111111111115678999999999999988888899999999998 22211 2567899999999987 77777
Q ss_pred cc-cCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418 303 EH-LWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 303 ~~-l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
.. +..+++|++|++++|. +..+.. .+..+..+..+.+.+|.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQ---LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCc---CCcCCHHHhccccCCCEEEecCCCe
Confidence 64 7889999999999987 223333 355666777777777754
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=5.7e-14 Score=139.01 Aligned_cols=181 Identities=16% Similarity=0.049 Sum_probs=113.4
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM 191 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l 191 (349)
++++.|.+.++....++. .+.+++.|. +|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEEC
Confidence 688999998887754322 345555555 444 56778888888887777765 3455666666
Q ss_pred cCcCccccchhhhccccchhhh------------------------------hCCCCCCeeeccCC------CCCCCccE
Q 041418 192 PFSYIDHTVDEFWKMKKLRHLN------------------------------FGLSCLKSLKLANE------SKMPWLSK 235 (349)
Q Consensus 192 ~~~~l~~lp~~i~~L~~L~~L~------------------------------~~l~~L~~L~l~~~------~~~~~L~~ 235 (349)
++|.++.+|..+ ++|++|+ ..+++|+.|+++++ ..+++|+.
T Consensus 129 ~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~ 205 (622)
T 3g06_A 129 FGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYK 205 (622)
T ss_dssp CSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhE
Confidence 666665555432 4444444 11244555555421 23445666
Q ss_pred EEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCCCCCCCccc
Q 041418 236 IVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPEHL 305 (349)
Q Consensus 236 L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l 305 (349)
|++++| ..+++|+.|++++|.++..+ ..+++|+.|+ .+..-...+++|+.|++++|. +..+|..+
T Consensus 206 L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l 280 (622)
T 3g06_A 206 LWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ-LTRLPESL 280 (622)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CCSCCGGG
T ss_pred EECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCC-CCcCCHHH
Confidence 666555 33466777777777776543 3456666666 111001256788888888886 77888888
Q ss_pred CCCCCCCEEEecCCC
Q 041418 306 WCIKSLNKFDCWWPQ 320 (349)
Q Consensus 306 ~~l~~L~~L~l~~~~ 320 (349)
..+++|+.|++++|+
T Consensus 281 ~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 IHLSSETTVNLEGNP 295 (622)
T ss_dssp GGSCTTCEEECCSCC
T ss_pred hhccccCEEEecCCC
Confidence 888999999998887
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=7.6e-15 Score=132.19 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=103.1
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY 195 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~ 195 (349)
...+++++.+.+.++.... + +.++.+++|++|++++|.++.++. + +++++|++|++++|.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-----------------~-~~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-----------------V-QGIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-----------------C-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSC
T ss_pred hhhcCcccEEEccCCCccc-----------------C-hhHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCc
Confidence 3445667777776655542 2 247778889999999999888877 5 889999999999998
Q ss_pred ccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCccc
Q 041418 196 IDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPV 264 (349)
Q Consensus 196 l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~ 264 (349)
++.+|. ++.+++|++|+ ..+..+..+ ..+++|+.|++++| ..+++|+.|++++|.+.+.+
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l-----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--- 172 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--- 172 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSCCCCCGGG-----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---
T ss_pred CCCChh-hccCCCCCEEECCCCcCCCChhh-----cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch---
Confidence 888765 66666555554 111111111 33444444444444 33445555555555544322
Q ss_pred ccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 265 LETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 265 l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
....+++|+.|++++|. +..+|. +..+++|+.|++++|+
T Consensus 173 ---------------~l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 ---------------PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---------------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred ---------------hhcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCc
Confidence 12567788888888876 777775 8888888888888875
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=3.2e-14 Score=139.02 Aligned_cols=184 Identities=12% Similarity=0.065 Sum_probs=136.4
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT 199 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l 199 (349)
++++.|.+.++.... . .|..++++++|++|++++|.++.+|+..|+++++|++|++++|.+..+
T Consensus 26 ~~L~~L~Ls~n~l~~--------~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 26 AAMKSLDLSFNKITY--------I--------GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTCCEEECCSSCCCE--------E--------CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCccEEECcCCccCc--------c--------ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 578888877765531 0 356789999999999999999988765559999999999999988888
Q ss_pred chh-hhccccchhhhhCCCCCCeeeccCC-CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCccccc
Q 041418 200 VDE-FWKMKKLRHLNFGLSCLKSLKLANE-SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLE 266 (349)
Q Consensus 200 p~~-i~~L~~L~~L~~~l~~L~~L~l~~~-~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~ 266 (349)
|+. ++++++|++|+-.-..+..+..... ..+++|+.|++++| ..+++|+.|++++|.+.+..+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 776 8888888888711112222111000 56788888888876 5578899999999999887778899
Q ss_pred CCccccccc----c---ccc-ccccccccceeeeeccCCCCCCC---c-ccCCCCCCCEEEecCCC
Q 041418 267 TLPLLQKAD----F---WTM-GNAAMPKLECLIINPCAYLKKMP---E-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 267 ~l~~L~~L~----~---~~~-~~~~~~~L~~L~l~~c~~l~~lp---~-~l~~l~~L~~L~l~~~~ 320 (349)
.+++|+.|+ . .+. ..+.+++|+.|++++|. +..++ . ....+++|+.|+++++.
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc
Confidence 999999887 1 000 01347899999999987 55542 1 13457888899888875
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=5.3e-14 Score=123.74 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418 243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
.+++|+.|++++|.+...+...+ +.+++|+.|++++|. +..+|+ .+..+++|+.|++++|+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAF----------------DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCCcCCccCHHHc----------------CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 45666666666666654443222 457889999999987 777765 58889999999999977
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=4.6e-14 Score=123.11 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=112.1
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CC-cccCCCCCCCEEeecC-CCCcccchhHHhcCcC
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YP-SGIENLFLLRYLKLNI-PSLKSLSSSLLSNLLN 185 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp-~~i~~l~~L~~L~l~~-~~l~~lp~~if~~l~~ 185 (349)
++++.|.+.++.....+ ...+.++..|+ +| ..++++++|++|++++ |.++.+|...|+++++
T Consensus 31 ~~l~~L~l~~n~l~~i~----~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP----SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEEC----TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEEC----HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 46778887777664322 22333333333 33 4688999999999998 9999999776699999
Q ss_pred CcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCcc-EEEEeecCCCCCCccc
Q 041418 186 LYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLT-HLSFSNTDRMDDPMPV 264 (349)
Q Consensus 186 L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~-~L~L~~~~l~~~~~~~ 264 (349)
|++|++++|.++.+|. ++.+++|+. |+.|+++ ..+.++.+.-.....+++|+ .|++++|.++..+...
T Consensus 107 L~~L~l~~n~l~~lp~-~~~l~~L~~-------L~~L~l~---~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPD-LTKVYSTDI-------FFILEIT---DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CCEEEEEEECCCSCCC-CTTCCBCCS-------EEEEEEE---SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred CCEEeCCCCCCccccc-ccccccccc-------ccEEECC---CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 9999999999999997 776665551 1233331 11122222110002344444 4555554444333222
Q ss_pred ccCCccccccc---c--c---c-cccccc-cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 265 LETLPLLQKAD---F--W---T-MGNAAM-PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 265 l~~l~~L~~L~---~--~---~-~~~~~~-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+.. ++|+.|+ . . . ...+.+ ++|+.|++++|. +..+|.. .+++|+.|++.++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 222 3444443 0 0 0 011346 889999999977 8899874 78999999999876
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=1.8e-13 Score=135.39 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=49.8
Q ss_pred CCCCCeeeccCC------CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------c
Q 041418 216 LSCLKSLKLANE------SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------F 276 (349)
Q Consensus 216 l~~L~~L~l~~~------~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~ 276 (349)
+++|+.|+++++ ..+++|+.|++++| ..+++|+.|++++|.++..+. .+++|+.|+ .
T Consensus 200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS
T ss_pred cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc
Confidence 455666666522 23466777777776 445677777777777765442 445566655 2
Q ss_pred cccccccccccceeeeeccCCCCCCCc
Q 041418 277 WTMGNAAMPKLECLIINPCAYLKKMPE 303 (349)
Q Consensus 277 ~~~~~~~~~~L~~L~l~~c~~l~~lp~ 303 (349)
++...+.+++|+.|++++|+..+..|.
T Consensus 276 lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCHHHhhccccCEEEecCCCCCCcCHH
Confidence 333335667777777777764444443
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=8.7e-14 Score=133.07 Aligned_cols=188 Identities=20% Similarity=0.145 Sum_probs=123.9
Q ss_pred CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCC-------------CEEeecCCC
Q 041418 117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLL-------------RYLKLNIPS 171 (349)
Q Consensus 117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L-------------~~L~l~~~~ 171 (349)
.+.+.+|.+.+.++... .++..+++++.|+ +|.+++++++| ++|++++|.
T Consensus 8 ~~~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccccchhhhcccCchh-----hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 34577888888777663 2344556666666 89999988875 999999999
Q ss_pred CcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCC-CCCCeeeccCC--------CCCCCc
Q 041418 172 LKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGL-SCLKSLKLANE--------SKMPWL 233 (349)
Q Consensus 172 l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l-~~L~~L~l~~~--------~~~~~L 233 (349)
++.+|.. .++|++|++++|.++.+|..+ ++|++|+ ..+ ++|++|+++++ ..+++|
T Consensus 83 l~~lp~~----~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L 155 (454)
T 1jl5_A 83 LSSLPEL----PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL 155 (454)
T ss_dssp CSCCCSC----CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred cccCCCC----cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCC
Confidence 9988862 478999999999888888643 5666665 122 57888887622 567889
Q ss_pred cEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCCCCCCCc
Q 041418 234 SKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPE 303 (349)
Q Consensus 234 ~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 303 (349)
+.|++++| ....+|+.|++++|.+.+.+ .++.+++|+.|+ .+..-....++|+.|++++|. +..+|.
T Consensus 156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~-l~~lp~ 232 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI-LEELPE 232 (454)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred CEEECCCCcCcccCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc-CCcccc
Confidence 99999988 34568999999999988743 688899999887 111101234689999999986 778885
Q ss_pred ccCCCCCCCEEEecCCC
Q 041418 304 HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 304 ~l~~l~~L~~L~l~~~~ 320 (349)
++.+++|++|++++|.
T Consensus 233 -~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNL 248 (454)
T ss_dssp -CTTCTTCCEEECCSSC
T ss_pred -cCCCCCCCEEECCCCc
Confidence 8899999999998876
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=2.7e-14 Score=141.07 Aligned_cols=138 Identities=25% Similarity=0.278 Sum_probs=87.7
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCC
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMP 231 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~ 231 (349)
.++.+++|+.|+|++|.++.+|+ + +.+++|+.|+|++|.+..+| .+..+++|++|+ ..+..+.. + ..++
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l---~~l~ 131 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING--L---VHLP 131 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGG--G---GGCT
T ss_pred HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCcc--c---cCCC
Confidence 57778888888888888887776 4 88888888888888777766 466555555554 11111111 1 3344
Q ss_pred CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc
Q 041418 232 WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE 303 (349)
Q Consensus 232 ~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 303 (349)
+|+.|++++| ..+++|+.|+|++|.+.+.++ ...+++|+.|+|++|. +..+|.
T Consensus 132 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~------------------l~~l~~L~~L~Ls~N~-i~~l~~ 192 (605)
T 1m9s_A 132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------------------LAGLTKLQNLYLSKNH-ISDLRA 192 (605)
T ss_dssp TCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG------------------GTTCTTCCEEECCSSC-CCBCGG
T ss_pred ccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh------------------hccCCCCCEEECcCCC-CCCChH
Confidence 4444444444 334455555555554443221 2567788888888876 677764
Q ss_pred ccCCCCCCCEEEecCCC
Q 041418 304 HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 304 ~l~~l~~L~~L~l~~~~ 320 (349)
+..+++|+.|++++|+
T Consensus 193 -l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 -LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCSEEECCSEE
T ss_pred -HccCCCCCEEEccCCc
Confidence 7888888888888775
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=1.2e-13 Score=132.05 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=29.4
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+++++++|++|++++|.++.+|... .+|++|++++|.++.+|. ++.+++|++|+
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~~----~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPE-LQNLPFLTTIY 243 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCCSSCCC-CTTCTTCCEEE
T ss_pred cccCCCCCCEEECCCCcCCcCCCCc----CcccEEECcCCcCCcccc-cCCCCCCCEEE
Confidence 3555555555555555555554321 355555555555555553 55566666555
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=5e-14 Score=119.26 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCe---eeccCCCCCCCc
Q 041418 157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKS---LKLANESKMPWL 233 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~---L~l~~~~~~~~L 233 (349)
+.+++|++|++++|.++.+| .+ ..+++|++|++++|.+..+| .+..+++|++|+-.-..+.. -.+ ..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL---SGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC---TTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh---cCCCCC
Confidence 44556666666666666666 44 66666666666666555443 34444433333200000000 000 223334
Q ss_pred cEEEEccC----------CCCCCccEEEEeecC-CCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCC
Q 041418 234 SKIVLAEY----------LFPHSLTHLSFSNTD-RMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMP 302 (349)
Q Consensus 234 ~~L~l~~~----------~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp 302 (349)
+.|++++| ..+++|+.|++++|. +...+ ....+++|+.|++++|. +..+|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~------------------~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM------------------PLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG------------------GGGGCSSCCEEECTTBC-CCCCT
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH------------------hhcCCCCCCEEECCCCC-CcChH
Confidence 44444433 445556666666555 32211 12467788888888887 77777
Q ss_pred cccCCCCCCCEEEecCCC
Q 041418 303 EHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 303 ~~l~~l~~L~~L~l~~~~ 320 (349)
.+..+++|+.|++++++
T Consensus 176 -~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp -TGGGCSSCCEEEECBC-
T ss_pred -HhccCCCCCEEEeeCcc
Confidence 58888899999998887
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.49 E-value=2.3e-15 Score=136.83 Aligned_cols=187 Identities=19% Similarity=0.116 Sum_probs=136.9
Q ss_pred CCcccC-------CCCCCCEEeecCCCCc-ccchhHH-hcCcCCcEEeccCcCccccchhhhcc-----ccchhhh---h
Q 041418 152 YPSGIE-------NLFLLRYLKLNIPSLK-SLSSSLL-SNLLNLYTLDMPFSYIDHTVDEFWKM-----KKLRHLN---F 214 (349)
Q Consensus 152 lp~~i~-------~l~~L~~L~l~~~~l~-~lp~~if-~~l~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~---~ 214 (349)
+|..+. ++++|++|++++|.++ .+|..+| +.+++|++|++++|.++.+|..++.+ ++|++|+ .
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 566555 7999999999999998 6887654 78999999999999988888888777 6666665 1
Q ss_pred CCCCCCeeeccCCCCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCC---CcccccCCccccccc--
Q 041418 215 GLSCLKSLKLANESKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD---PMPVLETLPLLQKAD-- 275 (349)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~-- 275 (349)
.+..+..=.+ ..+++|+.|++++| ..+++|+.|++++|.++.. +...+..+++|+.|+
T Consensus 160 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 160 HSLNFSCEQV---RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SCCCCCTTTC---CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCccchHHHh---ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 1111110011 56778888888877 4678999999999998742 223345778888888
Q ss_pred -----ccc--cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418 276 -----FWT--MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 276 -----~~~--~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
... .....+++|+.|++++|. ++.+|.++. ++|++|++++|. +..+ +.+..+.++..+.+.+|.++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~---l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR---LDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC---CCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC---CCCC-hhHhhCCCCCEEeccCCCCC
Confidence 111 112346899999999987 789998776 899999999987 2333 33666677778888888765
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=4.3e-14 Score=129.42 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=25.8
Q ss_pred ccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCC
Q 041418 282 AAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWP 319 (349)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~ 319 (349)
+.+++|+.|++++|..+..- ...++.+++|+.|++++|
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 45678888888888622111 113677888888888887
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=123.73 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=87.9
Q ss_pred CCccc--CCCCCCCEEeecCCCCcc-cc----hhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCCe--
Q 041418 152 YPSGI--ENLFLLRYLKLNIPSLKS-LS----SSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLKS-- 221 (349)
Q Consensus 152 lp~~i--~~l~~L~~L~l~~~~l~~-lp----~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~~-- 221 (349)
.|..+ +.+++|++|++++|.++. .| ..+ ..+++|++|++++|.+..+| ..++.+++|++|+-.-.++..
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 44555 677777777777777764 22 222 46777777777777666664 345555555555400000000
Q ss_pred -eeccC-CCCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCC---ccccccc----cc-c
Q 041418 222 -LKLAN-ESKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETL---PLLQKAD----FW-T 278 (349)
Q Consensus 222 -L~l~~-~~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l---~~L~~L~----~~-~ 278 (349)
+.... -..+++|++|++++| ..+++|++|++++|.+.+..++.+..+ ++|++|+ .+ .
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc
Confidence 00000 024455666666655 234777788888887776544444443 3444444 00 0
Q ss_pred cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 279 MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 279 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+.+.+++|+.|++++|. +..+|. +..+++|+.|++++|+
T Consensus 266 lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 266 VPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred hhhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 011123556666666655 555554 5556666666666655
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1e-13 Score=118.24 Aligned_cols=132 Identities=17% Similarity=0.105 Sum_probs=90.0
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWL 233 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L 233 (349)
.++.+++|++|++++|.++.+|...|+.+++|++|++++|.++.+|.. ++.++ +|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L 102 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------------------------QL 102 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------------------TC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------------------------CC
Confidence 356666777777777777666665556677777777777766666543 23333 33
Q ss_pred cEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-ccccccccccccceeeeeccCCCCCCC
Q 041418 234 SKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-FWTMGNAAMPKLECLIINPCAYLKKMP 302 (349)
Q Consensus 234 ~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-~~~~~~~~~~~L~~L~l~~c~~l~~lp 302 (349)
+.|++++| ..+++|+.|++++|.+++.+...+..+++|+.|+ ..-.-.+.+++|+.|+++.|...+.+|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceee
Confidence 33333333 4578899999999998877777788888888887 111112567889999999988888999
Q ss_pred cccCCCCC
Q 041418 303 EHLWCIKS 310 (349)
Q Consensus 303 ~~l~~l~~ 310 (349)
.+++.++.
T Consensus 183 ~~~~~l~~ 190 (208)
T 2o6s_A 183 NSAGSVAP 190 (208)
T ss_dssp CTTSSBCT
T ss_pred ccCccccC
Confidence 88887765
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=2.8e-13 Score=119.13 Aligned_cols=161 Identities=22% Similarity=0.242 Sum_probs=110.6
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+. +++++|++++|.++.++...|+++++|++|++++|.++.+++. +..++ +|+.|++++
T Consensus 29 ~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------~L~~L~L~~---- 92 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT----------ELGTLGLAN---- 92 (251)
T ss_dssp CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------TCCEEECTT----
T ss_pred cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC----------cCCEEECCC----
Confidence 565554 5788999999988887775558899999999999988777654 44433 333333320
Q ss_pred CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418 231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK 309 (349)
Q Consensus 231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~ 309 (349)
..+..+.......+++|+.|++++|.++..+...+ +.+++|+.|++++|. +..+|+ .++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 155 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF----------------DRLTKLKELRLNTNQ-LQSIPAGAFDKLT 155 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHh----------------ccCCcccEEECcCCc-CCccCHHHcCcCc
Confidence 11111110000456788888888888776554333 457889999999986 788877 588999
Q ss_pred CCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418 310 SLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 310 ~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~ 348 (349)
+|+.|++++|. +..+.+ .+..+.++..+.+.+|.++
T Consensus 156 ~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQ---LQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCc---CCccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999999997 223433 5666777888888888764
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=2.9e-14 Score=136.18 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=120.5
Q ss_pred CCcccCCCCCCCEEeecCCCCcc-cchhHHhcCc----CCcEEeccCcCcc-----ccchhhhccccchhhh--------
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKS-LSSSLLSNLL----NLYTLDMPFSYID-----HTVDEFWKMKKLRHLN-------- 213 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~-lp~~if~~l~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~-------- 213 (349)
+|..+..+++|++|++++|.++. -+..++..+. +|++|++++|.++ .+|..+.++++|++|+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 34567778888899998888874 2344434566 6888888888766 4677788888888887
Q ss_pred -----------hCCCCCCeeeccCC--------------CCCCCccEEEEccC---------------CCCCCccEEEEe
Q 041418 214 -----------FGLSCLKSLKLANE--------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFS 253 (349)
Q Consensus 214 -----------~~l~~L~~L~l~~~--------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~ 253 (349)
...++|++|++++. ..+++|+.|++++| ...++|+.|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 12457999988722 34689999999988 135689999999
Q ss_pred ecCCCCCC----cccccCCccccccc----ccc--------c-ccccccccceeeeeccCCCCC-----CCcccCCCCCC
Q 041418 254 NTDRMDDP----MPVLETLPLLQKAD----FWT--------M-GNAAMPKLECLIINPCAYLKK-----MPEHLWCIKSL 311 (349)
Q Consensus 254 ~~~l~~~~----~~~l~~l~~L~~L~----~~~--------~-~~~~~~~L~~L~l~~c~~l~~-----lp~~l~~l~~L 311 (349)
+|.++... ...+..+++|+.|+ .+. . ....+++|+.|++++|. ++. +|..+..+++|
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCc
Confidence 99887653 34556678888887 100 0 00136789999999886 665 66667778889
Q ss_pred CEEEecCCC
Q 041418 312 NKFDCWWPQ 320 (349)
Q Consensus 312 ~~L~l~~~~ 320 (349)
++|++++|.
T Consensus 287 ~~L~Ls~n~ 295 (461)
T 1z7x_W 287 KELSLAGNE 295 (461)
T ss_dssp CEEECTTCC
T ss_pred ceEECCCCC
Confidence 999998887
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=3.7e-13 Score=121.11 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=108.7
Q ss_pred cCcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418 112 MDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM 191 (349)
Q Consensus 112 ~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l 191 (349)
.+.....+++++.|.+.++.... ++. ++.+++|++|++++|.++.+|. + +.+++|++|++
T Consensus 60 ~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~L 119 (291)
T 1h6t_A 60 SVQGIQYLPNVTKLFLNGNKLTD-----------------IKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLSL 119 (291)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCC-----------------CGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEEC
T ss_pred cChhHhcCCCCCEEEccCCccCC-----------------Ccc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEEC
Confidence 34445667889999988876652 333 7889999999999999999876 5 99999999999
Q ss_pred cCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCC
Q 041418 192 PFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 192 ~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~ 260 (349)
++|.++.+| .+..+++|++|+ ..++.+..+ ..+++|+.|++++| ..+++|+.|++++|.++..
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l-----~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVL-----SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGG-----GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhh-----ccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC
Confidence 999998885 588888888876 223333222 56788888888888 6789999999999998753
Q ss_pred CcccccCCcccccccccccccccccccceeeeeccCCCCCCC
Q 041418 261 PMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMP 302 (349)
Q Consensus 261 ~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp 302 (349)
+ .+. .+++|+.|++++|+ +...|
T Consensus 194 ~--~l~----------------~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 194 R--ALA----------------GLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp G--GGT----------------TCTTCSEEEEEEEE-EECCC
T ss_pred h--hhc----------------cCCCCCEEECcCCc-ccCCc
Confidence 2 343 45566666666665 43333
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=2.8e-13 Score=120.03 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=72.3
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccE
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSK 235 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~ 235 (349)
+..+++|++|++++|.++.+| .+ +.+++|++|++++|.++.+|. ++++++|++|+-.-.++..+.-. .. ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCE
T ss_pred hhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc-CcccE
Confidence 445556666666666666665 34 566666666666666666554 44444443333000011110000 11 33444
Q ss_pred EEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCC
Q 041418 236 IVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWC 307 (349)
Q Consensus 236 L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~ 307 (349)
|++++| ..+++|+.|++++|.+++.+ .+ +.+++|+.|++++|. +..++ .+..
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l----------------~~l~~L~~L~L~~N~-i~~~~-~l~~ 170 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--ML----------------GFLSKLEVLDLHGNE-ITNTG-GLTR 170 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GG----------------GGCTTCCEEECTTSC-CCBCT-TSTT
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh--HH----------------ccCCCCCEEECCCCc-CcchH-Hhcc
Confidence 444433 44556666666666654321 22 446667777777765 55553 4667
Q ss_pred CCCCCEEEecCCC
Q 041418 308 IKSLNKFDCWWPQ 320 (349)
Q Consensus 308 l~~L~~L~l~~~~ 320 (349)
+++|+.|++++|+
T Consensus 171 l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 171 LKKVNWIDLTGQK 183 (263)
T ss_dssp CCCCCEEEEEEEE
T ss_pred CCCCCEEeCCCCc
Confidence 7777777777665
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=9.6e-13 Score=114.12 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=89.6
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+. ++|++|++++|.++.+++..|+++++|++|++++|.++.+|... ..++ +|+.|++++
T Consensus 34 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~----------~L~~L~Ls~---- 97 (229)
T 3e6j_A 34 VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----------QLTVLDLGT---- 97 (229)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------TCCEEECCS----
T ss_pred cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC----------CcCEEECCC----
Confidence 555443 77888888888888775544488888888888888888777543 3333 333333310
Q ss_pred CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418 231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK 309 (349)
Q Consensus 231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~ 309 (349)
..++.+.-.....+++|+.|++++|.+...+ .. ...+++|+.|++++|. +..+|. .+..++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~----------------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RG----------------IERLTHLTHLALDQNQ-LKSIPHGAFDRLS 159 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TT----------------GGGCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC-cc----------------cccCCCCCEEECCCCc-CCccCHHHHhCCC
Confidence 0111111000045678888888888876433 22 1567899999999986 788875 478899
Q ss_pred CCCEEEecCCC
Q 041418 310 SLNKFDCWWPQ 320 (349)
Q Consensus 310 ~L~~L~l~~~~ 320 (349)
+|+.|++.++|
T Consensus 160 ~L~~L~l~~N~ 170 (229)
T 3e6j_A 160 SLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEEeeCCC
Confidence 99999999987
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=4.1e-14 Score=132.35 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=94.3
Q ss_pred CCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEeccCcCcccc-----chhhhccccchhhh--hCCCCCCeeec
Q 041418 157 ENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDMPFSYIDHT-----VDEFWKMKKLRHLN--FGLSCLKSLKL 224 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l~~~~l~~l-----p~~i~~L~~L~~L~--~~l~~L~~L~l 224 (349)
..+++|++|++++|.++. +|..+ .++++|++|++++|.++.. +..+..+ .... +..++|++|++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l---~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQEL---AVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---HHHHHHHTCCCCCEEEC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHH---hhhhhcccCCCCcEEEC
Confidence 566667777777666654 55555 6666777777766655432 1112222 0000 11156666666
Q ss_pred cCC--------------CCCCCccEEEEccC---------------CCCCCccEEEEeecCCC----CCCcccccCCccc
Q 041418 225 ANE--------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFSNTDRM----DDPMPVLETLPLL 271 (349)
Q Consensus 225 ~~~--------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~----~~~~~~l~~l~~L 271 (349)
+++ ..+++|+.|++++| ..+++|+.|+|++|.++ ...+..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 511 24567777777776 25677888888888764 2233456667777
Q ss_pred cccc----cc--------cccc--ccccccceeeeeccCCCCC-----CCccc-CCCCCCCEEEecCCC
Q 041418 272 QKAD----FW--------TMGN--AAMPKLECLIINPCAYLKK-----MPEHL-WCIKSLNKFDCWWPQ 320 (349)
Q Consensus 272 ~~L~----~~--------~~~~--~~~~~L~~L~l~~c~~l~~-----lp~~l-~~l~~L~~L~l~~~~ 320 (349)
+.|+ .+ .... +.+++|+.|++++|. +.. +|..+ .++++|+.|++++|+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7776 10 1101 236778888888877 554 77666 557888888888776
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.8e-12 Score=111.71 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=90.1
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+. ++|+.|++++|.++.+|...|..+++|++|++++|.++.+ |..+.++++|++| +++ -
T Consensus 26 iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L----------~Ls----~ 89 (220)
T 2v9t_B 26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL----------VLY----G 89 (220)
T ss_dssp CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE----------ECC----S
T ss_pred CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE----------ECC----C
Confidence 454443 5678888888888877765557788888888888877776 4455544433333 321 0
Q ss_pred CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418 231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK 309 (349)
Q Consensus 231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~ 309 (349)
..++.+.-.....+++|+.|+|++|.+...++..+ ..+++|+.|++++|. +..+|. .+..++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF----------------QDLHNLNLLSLYDNK-LQTIAKGTFSPLR 152 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc----------------CCCCCCCEEECCCCc-CCEECHHHHhCCC
Confidence 01111110000456788888888888877655444 456789999999987 777765 488899
Q ss_pred CCCEEEecCCC
Q 041418 310 SLNKFDCWWPQ 320 (349)
Q Consensus 310 ~L~~L~l~~~~ 320 (349)
+|+.|+++++|
T Consensus 153 ~L~~L~L~~N~ 163 (220)
T 2v9t_B 153 AIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999999877
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=6.3e-13 Score=122.73 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=116.8
Q ss_pred CC-cccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcE-EeccCcCccccch-hhhccccchhhh--------------
Q 041418 152 YP-SGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYT-LDMPFSYIDHTVD-EFWKMKKLRHLN-------------- 213 (349)
Q Consensus 152 lp-~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~-L~l~~~~l~~lp~-~i~~L~~L~~L~-------------- 213 (349)
+| .+|+++++|++|+|++|.+. .+|...|.++++|+. +.+++|.+..+|+ .+..+++|++|+
T Consensus 45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 55 45788888999999888864 577766688888775 4555568888854 467888888887
Q ss_pred hCCCCCCeeeccCC-----------CC-CCCccEEEEccC---------CCCCCccEEEEee-cCCCCCCcccccCCccc
Q 041418 214 FGLSCLKSLKLANE-----------SK-MPWLSKIVLAEY---------LFPHSLTHLSFSN-TDRMDDPMPVLETLPLL 271 (349)
Q Consensus 214 ~~l~~L~~L~l~~~-----------~~-~~~L~~L~l~~~---------~~~~~L~~L~L~~-~~l~~~~~~~l~~l~~L 271 (349)
....++..|++.+. .. ...++.|++++| ....+|+.|++.+ |.++..+...++.+++|
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 12233444444311 11 235777888877 2345678888864 56666666778889999
Q ss_pred cccc----cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418 272 QKAD----FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 272 ~~L~----~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 318 (349)
+.|+ .+ ..+.+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.+
T Consensus 205 ~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp SEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred chhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 9888 11 11235688899999999999999996 88999999999865
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=5.9e-14 Score=131.28 Aligned_cols=184 Identities=18% Similarity=0.167 Sum_probs=121.9
Q ss_pred cccCCCCCCCEEeecCCCCc----ccchhH------HhcCcCCcEEeccCcCccc-----cchhhhccccchhhhhCCCC
Q 041418 154 SGIENLFLLRYLKLNIPSLK----SLSSSL------LSNLLNLYTLDMPFSYIDH-----TVDEFWKMKKLRHLNFGLSC 218 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~----~lp~~i------f~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~~l~~ 218 (349)
..+..+++|++|++++|.+. .+|..+ |.++++|++|++++|.++. +|..+.++++|++|
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L------ 127 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL------ 127 (386)
T ss_dssp HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE------
T ss_pred HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEE------
Confidence 44667888888888887554 344443 3678888888888887665 66666666555555
Q ss_pred CCeeeccCC--------------CCC---------CCccEEEEccC--------------CCCCCccEEEEeecCCCCC-
Q 041418 219 LKSLKLANE--------------SKM---------PWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD- 260 (349)
Q Consensus 219 L~~L~l~~~--------------~~~---------~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~- 260 (349)
++++. ..+ ++|+.|++++| ..+++|+.|++++|.+...
T Consensus 128 ----~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g 203 (386)
T 2ca6_A 128 ----YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203 (386)
T ss_dssp ----ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred ----ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH
Confidence 44311 112 79999999988 2567999999999988632
Q ss_pred ---Ccc-cccCCccccccc----cc--------ccccccccccceeeeeccCCCCC-----CCccc--CCCCCCCEEEec
Q 041418 261 ---PMP-VLETLPLLQKAD----FW--------TMGNAAMPKLECLIINPCAYLKK-----MPEHL--WCIKSLNKFDCW 317 (349)
Q Consensus 261 ---~~~-~l~~l~~L~~L~----~~--------~~~~~~~~~L~~L~l~~c~~l~~-----lp~~l--~~l~~L~~L~l~ 317 (349)
..+ .+..+++|+.|+ .+ +.....+++|+.|++++|. +.. +|..+ +.+++|+.|+++
T Consensus 204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECc
Confidence 123 677788888887 11 1122457889999999987 543 45555 448999999999
Q ss_pred CCCHHH--HHhhhhcc-cccccccceeeeccccc
Q 041418 318 WPQPEL--RQKLREFE-DKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 318 ~~~~~~--~~~l~~~~-~~i~~ip~i~~~~~~~~ 348 (349)
+|.-.- ...+.... ....++..+.+.+|.++
T Consensus 283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 987211 11233322 33466667777777654
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=7.9e-13 Score=130.54 Aligned_cols=109 Identities=25% Similarity=0.255 Sum_probs=84.9
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCC
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPW 232 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~ 232 (349)
++.+++|++|+|++|.++.+| .+ +.+++|++|+|++|.+..+|. +..+++|+.|+ ..+..+..+ ..+++
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l-----~~l~~ 154 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVL-----SRLTK 154 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG-----GSCTT
T ss_pred hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhh-----cccCC
Confidence 888999999999999999987 55 999999999999999988864 88888888887 233333222 67888
Q ss_pred ccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccc
Q 041418 233 LSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKA 274 (349)
Q Consensus 233 L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 274 (349)
|+.|+|++| ..+++|+.|+|++|.+... +.+..+++|+.|
T Consensus 155 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L 202 (605)
T 1m9s_A 155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL 202 (605)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred CCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC--hHHccCCCCCEE
Confidence 999998888 6789999999999998753 345444444333
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=5.4e-13 Score=123.70 Aligned_cols=186 Identities=15% Similarity=0.084 Sum_probs=101.8
Q ss_pred ccCCCC-CCCEEeecCCCCcccchhHHhcC-----cCCcEEeccCcCccccch-hhhccccchhhhhCC-CCCCeeeccC
Q 041418 155 GIENLF-LLRYLKLNIPSLKSLSSSLLSNL-----LNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGL-SCLKSLKLAN 226 (349)
Q Consensus 155 ~i~~l~-~L~~L~l~~~~l~~lp~~if~~l-----~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l-~~L~~L~l~~ 226 (349)
.+..++ +|++|++++|.++......|+.+ ++|++|++++|.++..+. .+... + ..+ ++|+.|++++
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----l-~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT-----L-AAIPFTITVLDLGW 118 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-----H-HTSCTTCCEEECCS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH-----H-HhCCCCccEEECcC
Confidence 345555 66666666666665432222443 666666666665554432 22221 0 122 4555555552
Q ss_pred C--------------CC-CCCccEEEEccC--------------CCC-CCccEEEEeecCCCCCCcccc----cCC-ccc
Q 041418 227 E--------------SK-MPWLSKIVLAEY--------------LFP-HSLTHLSFSNTDRMDDPMPVL----ETL-PLL 271 (349)
Q Consensus 227 ~--------------~~-~~~L~~L~l~~~--------------~~~-~~L~~L~L~~~~l~~~~~~~l----~~l-~~L 271 (349)
+ .. +++|++|++++| ... ++|+.|++++|.++......+ ... ++|
T Consensus 119 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 198 (362)
T 3goz_A 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198 (362)
T ss_dssp SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCC
Confidence 1 12 357777777766 122 377777777777765554333 333 367
Q ss_pred cccc----cc--------cccccc-ccccceeeeeccCCCCCCCc-----ccCCCCCCCEEEecCCC-----HHHHHhhh
Q 041418 272 QKAD----FW--------TMGNAA-MPKLECLIINPCAYLKKMPE-----HLWCIKSLNKFDCWWPQ-----PELRQKLR 328 (349)
Q Consensus 272 ~~L~----~~--------~~~~~~-~~~L~~L~l~~c~~l~~lp~-----~l~~l~~L~~L~l~~~~-----~~~~~~l~ 328 (349)
+.|+ .+ ...... .++|+.|++++|. ++..+. .+..+++|+.|++++|. .+....+.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 6666 11 000111 2478888888876 555442 34667788888887764 33344444
Q ss_pred hcccccccccceeeecccc
Q 041418 329 EFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 329 ~~~~~i~~ip~i~~~~~~~ 347 (349)
..+....++..+.+.+|.+
T Consensus 278 ~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTSTTCCEEEEECTTSCBC
T ss_pred HHhccCCceEEEecCCCcC
Confidence 4556666666666666654
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=8.3e-14 Score=132.99 Aligned_cols=204 Identities=14% Similarity=0.000 Sum_probs=136.3
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhh-h---ccCcccc-------------CCcccCCCCCCCEEeecCCCCcccch-
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKI-C---GMFKLLR-------------YPSGIENLFLLRYLKLNIPSLKSLSS- 177 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~-~---~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~~lp~- 177 (349)
...+++++.|.+.++.........+... . .+++.|. ++..+..+++|++|++++|.++..+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 3456677777777665431101111111 1 1344444 24456667888888888887764322
Q ss_pred hH----HhcCcCCcEEeccCcCccc-----cchhhhccccchhhh-------------------hCCCCCCeeeccCC--
Q 041418 178 SL----LSNLLNLYTLDMPFSYIDH-----TVDEFWKMKKLRHLN-------------------FGLSCLKSLKLANE-- 227 (349)
Q Consensus 178 ~i----f~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~-------------------~~l~~L~~L~l~~~-- 227 (349)
.+ ....++|++|++++|.++. +|..+..+++|++|+ ..+++|+.|++++.
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 22 1135688888888887765 577777888888887 14788999988722
Q ss_pred ------------CCCCCccEEEEccC---------------CCCCCccEEEEeecCCCCCC----cccccCCccccccc-
Q 041418 228 ------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFSNTDRMDDP----MPVLETLPLLQKAD- 275 (349)
Q Consensus 228 ------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~- 275 (349)
..+++|+.|++++| ...++|+.|++++|.++... ...+..+++|+.|+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 34788999999988 23469999999999887653 23455668888887
Q ss_pred --ccccc-----c-c----cccccceeeeeccCCCC-----CCCcccCCCCCCCEEEecCCC
Q 041418 276 --FWTMG-----N-A----AMPKLECLIINPCAYLK-----KMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 276 --~~~~~-----~-~----~~~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~ 320 (349)
....+ . . ..++|+.|++++|. ++ .+|..+..+++|++|++++|+
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 00000 0 1 15689999999997 55 678878889999999999987
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=4.2e-12 Score=124.30 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=30.6
Q ss_pred cceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 287 LECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 287 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
|+.|++++|. +..+|.++..+++|+.|++++|+
T Consensus 209 L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 209 EIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred ceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 3999999987 88999999999999999999998
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=110.03 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCcccCCCCCCCEEeecCCCCcccc-hhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLS-SSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESK 229 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp-~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~ 229 (349)
+|..+. ..+++|++++|.++.++ ...|+++++|++|++++|.++.+|+ .++++++ |+.|++++
T Consensus 26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~----------L~~L~Ls~--- 90 (220)
T 2v70_A 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG----------VNEILLTS--- 90 (220)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT----------CCEEECCS---
T ss_pred CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC----------CCEEECCC---
Confidence 444443 24578888888887763 3444788888888888887777765 3443332 22222210
Q ss_pred CCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCC
Q 041418 230 MPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCI 308 (349)
Q Consensus 230 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l 308 (349)
..+..+.-.....+++|+.|++++|.+...++..+ ..+++|+.|++++|. +..+ |..+..+
T Consensus 91 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l 152 (220)
T 2v70_A 91 -NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF----------------IGLSSVRLLSLYDNQ-ITTVAPGAFDTL 152 (220)
T ss_dssp -SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS----------------TTCTTCSEEECTTSC-CCCBCTTTTTTC
T ss_pred -CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc----------------CCCccCCEEECCCCc-CCEECHHHhcCC
Confidence 01111100000456777777777777766544433 457889999999987 6666 6778999
Q ss_pred CCCCEEEecCCC
Q 041418 309 KSLNKFDCWWPQ 320 (349)
Q Consensus 309 ~~L~~L~l~~~~ 320 (349)
++|+.|++++|+
T Consensus 153 ~~L~~L~L~~N~ 164 (220)
T 2v70_A 153 HSLSTLNLLANP 164 (220)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEecCcC
Confidence 999999999987
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=8.2e-12 Score=123.50 Aligned_cols=198 Identities=18% Similarity=0.150 Sum_probs=144.9
Q ss_pred CCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-------CCcccCCCCCCCEEeecCCCCc---ccchhHHhcCcCCc
Q 041418 118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------YPSGIENLFLLRYLKLNIPSLK---SLSSSLLSNLLNLY 187 (349)
Q Consensus 118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------lp~~i~~l~~L~~L~l~~~~l~---~lp~~if~~l~~L~ 187 (349)
....++.+.+.++....... ..+..++.+. .+.....+++|++|++++|.+. ..|... ..+.+|+
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~ 400 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLK 400 (635)
T ss_dssp SCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCC
T ss_pred cchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch-hhhhhhh
Confidence 34566777766654432111 1222333332 2334557889999999998875 345566 7889999
Q ss_pred EEeccCcCccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC-
Q 041418 188 TLDMPFSYIDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY- 241 (349)
Q Consensus 188 ~L~l~~~~l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~- 241 (349)
+|++..+....++..+..+++|+.++ ..+++++.++++.+ ..++.|+.|++++|
T Consensus 401 ~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 99999987777777788888888776 45677888877621 56789999999887
Q ss_pred ----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCc
Q 041418 242 ----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPE 303 (349)
Q Consensus 242 ----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~ 303 (349)
..+++|+.|+|++|++++.++..++.+++|+.|+ ... ...+.+++|+.|++++|...+..|.
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 5678999999999999988888999999999998 121 1235678999999999984444455
Q ss_pred ccCCC-CCCCEEEecCCC
Q 041418 304 HLWCI-KSLNKFDCWWPQ 320 (349)
Q Consensus 304 ~l~~l-~~L~~L~l~~~~ 320 (349)
.+..+ ++|+.|++++||
T Consensus 561 ~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCCTTCCEEECTTCC
T ss_pred HHHhhhCcCCEEEeeCCC
Confidence 67777 689999998866
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=121.29 Aligned_cols=180 Identities=15% Similarity=0.100 Sum_probs=121.2
Q ss_pred CCCCCEEeecCCCCcc-cchhHH-hcCcCCcEEeccCcCcccc-c----hhhhccccchhhh---hCCCCCCeeeccCCC
Q 041418 159 LFLLRYLKLNIPSLKS-LSSSLL-SNLLNLYTLDMPFSYIDHT-V----DEFWKMKKLRHLN---FGLSCLKSLKLANES 228 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~-lp~~if-~~l~~L~~L~l~~~~l~~l-p----~~i~~L~~L~~L~---~~l~~L~~L~l~~~~ 228 (349)
+++|++|++++|.++. .|..+| +++++|++|++++|.+... | ..+..+++|++|+ ..+..+..-.+ .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV---R 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC---C
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh---c
Confidence 4569999999999884 444433 7899999999999977653 2 2234455555554 11111110011 4
Q ss_pred CCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcc---cccCCccccccc-------cc-cccccc
Q 041418 229 KMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMP---VLETLPLLQKAD-------FW-TMGNAA 283 (349)
Q Consensus 229 ~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~---~l~~l~~L~~L~-------~~-~~~~~~ 283 (349)
.+++|+.|++++| ..+++|++|++++|.++..+.. .++.+++|++|+ .. +...+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 6778888888887 3578899999999998643211 246778888888 11 111233
Q ss_pred c---cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418 284 M---PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 284 ~---~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
+ ++|+.|++++|. ++.+|.++. ++|+.|++++|.- ..+ +....+..+..+.+.+|.++
T Consensus 247 ~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l---~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 247 CMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRL---NRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCC---CSC-CCTTSCCCCSCEECSSTTTS
T ss_pred ccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcC---CCC-chhhhCCCccEEECcCCCCC
Confidence 3 699999999987 779998764 8999999999872 222 23455667778888888765
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.1e-14 Score=142.75 Aligned_cols=160 Identities=19% Similarity=0.110 Sum_probs=119.6
Q ss_pred CCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC--------------ccccchhhhccccchhhh----hCCCC
Q 041418 157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY--------------IDHTVDEFWKMKKLRHLN----FGLSC 218 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~--------------l~~lp~~i~~L~~L~~L~----~~l~~ 218 (349)
...++|+.|++++|.++.+|+++ +++++|+.|++++|. .+.+|..++.+++|+.|+ +.+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 67889999999999999999999 999999999997763 334566778888888875 11222
Q ss_pred CCeeeccCC----CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc
Q 041418 219 LKSLKLANE----SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM 279 (349)
Q Consensus 219 L~~L~l~~~----~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~ 279 (349)
|+.+.+.++ -....|+.|++++| ..+++|+.|++++|.++.. +..++.+++|+.|+ .+ +
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c
Confidence 222222100 01123555555555 5577899999999998844 46888889998888 32 2
Q ss_pred ccccccccceeeeeccCCCCCC--CcccCCCCCCCEEEecCCC
Q 041418 280 GNAAMPKLECLIINPCAYLKKM--PEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 280 ~~~~~~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L~l~~~~ 320 (349)
..+.+++|+.|++++|. +..+ |..++.+++|+.|++++|+
T Consensus 503 ~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 503 GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 55678999999999987 7777 8889999999999999998
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=5.3e-13 Score=122.11 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=124.8
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCC--CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENL--FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l--~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
..++.+.+.++... |..++.+ +++++|++++|.+...+..+ .++++|++|++++|.+.
T Consensus 47 ~~~~~l~l~~~~~~-------------------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-------------------PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TTSSEEECTTCBCC-------------------HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEEC
T ss_pred hhheeeccccccCC-------------------HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcC
Confidence 35777777665432 2234445 78999999999998877777 78999999999999665
Q ss_pred c--cchhhhccccchhhhhCCCCCCeeeccCC----------CCCCCccEEEEccC------------CCCCCccEEEEe
Q 041418 198 H--TVDEFWKMKKLRHLNFGLSCLKSLKLANE----------SKMPWLSKIVLAEY------------LFPHSLTHLSFS 253 (349)
Q Consensus 198 ~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~------------~~~~~L~~L~L~ 253 (349)
. +|..+..+++|++|+ +++. ..+++|+.|++++| ..+++|+.|+++
T Consensus 107 ~~~~~~~~~~~~~L~~L~----------L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 107 VSTLHGILSQCSKLQNLS----------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp HHHHHHHHTTBCCCSEEE----------CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHhhCCCCCEEe----------CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 3 777777777666665 2210 45677777777766 457889999999
Q ss_pred ec-CCCCC-CcccccCCc-cccccc---c--c------ccccccccccceeeeeccCCC-CCCCcccCCCCCCCEEEecC
Q 041418 254 NT-DRMDD-PMPVLETLP-LLQKAD---F--W------TMGNAAMPKLECLIINPCAYL-KKMPEHLWCIKSLNKFDCWW 318 (349)
Q Consensus 254 ~~-~l~~~-~~~~l~~l~-~L~~L~---~--~------~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~ 318 (349)
+| .+++. ....++.++ +|++|+ . . +...+.+++|+.|++++|..+ ...+..+..+++|++|++++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 99 77653 244567788 888887 1 0 111245789999999999844 35666789999999999999
Q ss_pred CC
Q 041418 319 PQ 320 (349)
Q Consensus 319 ~~ 320 (349)
|+
T Consensus 257 ~~ 258 (336)
T 2ast_B 257 CY 258 (336)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=6.5e-12 Score=116.40 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=75.6
Q ss_pred CCCEEeecCCCCcccchhHHh-cCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418 161 LLRYLKLNIPSLKSLSSSLLS-NLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL 238 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~-~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l 238 (349)
.+++|++++|.++.+|...|. ++++|++|++++|.++.+|. .+.++++|++|+-.-.+|+.+.-..-..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 467777777777777666545 67777777777777766654 3554444444431111111111000022333333333
Q ss_pred ccC----------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCC
Q 041418 239 AEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWC 307 (349)
Q Consensus 239 ~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~ 307 (349)
++| ..+++|+.|+|++|.++..+...+.. ...+++|+.|++++|. +..+|. .+..
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------------~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 185 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD-------------GNKLPKLMLLDLSSNK-LKKLPLTDLQK 185 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----------------CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-------------cccCCcCCEEECCCCC-CCccCHHHhhh
Confidence 333 34455555555555554433222211 0346777777887765 667764 3555
Q ss_pred CCC--CCEEEecCCC
Q 041418 308 IKS--LNKFDCWWPQ 320 (349)
Q Consensus 308 l~~--L~~L~l~~~~ 320 (349)
+++ |+.|++.+||
T Consensus 186 l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 186 LPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCHHHHTTEECCSSC
T ss_pred ccHhhcceEEecCCC
Confidence 665 3677777766
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3e-12 Score=105.26 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEE
Q 041418 159 LFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKI 236 (349)
Q Consensus 159 l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L 236 (349)
.++|++|++++|.++ .+|..+ +.+++|++|++++|.++.+ ..++.+ ++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l------------------------~~L~~L 76 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV-SNLPKL------------------------PKLKKL 76 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC-SSCCCC------------------------SSCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh-hhhccC------------------------CCCCEE
Confidence 356677777777666 666655 6667777777777666555 223222 222222
Q ss_pred EEccC----------CCCCCccEEEEeecCCCCCCc-ccccCCcccccccccccccccccccceeeeeccCCCCCCCc--
Q 041418 237 VLAEY----------LFPHSLTHLSFSNTDRMDDPM-PVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-- 303 (349)
Q Consensus 237 ~l~~~----------~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-- 303 (349)
++++| ..+++|+.|++++|.++..+. ..+ +.+++|+.|++++|+ +..+|.
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l----------------~~l~~L~~L~l~~N~-l~~~~~~~ 139 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL----------------KKLECLKSLDLFNCE-VTNLNDYR 139 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG----------------SSCSCCCEEECCSSG-GGTSTTHH
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH----------------hcCCCCCEEEeeCCc-CcchHHHH
Confidence 22222 235677777788887765431 222 457788888898887 777776
Q ss_pred --ccCCCCCCCEEEecCCC
Q 041418 304 --HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 304 --~l~~l~~L~~L~l~~~~ 320 (349)
.+..+++|++|++++|+
T Consensus 140 ~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHTTCSSCCEETTEETT
T ss_pred HHHHHhCccCcEecCCCCC
Confidence 67888999999998887
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.31 E-value=2e-12 Score=137.67 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=81.2
Q ss_pred HhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCCc
Q 041418 4 TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGT 83 (349)
Q Consensus 4 ~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~ 83 (349)
+.|..++++||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++.... ++
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~~---~~ 431 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNRN---GK 431 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEES---SS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEecC---CC
Confidence 5689999999999999999999999999999999999999999765 4668999999999999997653 33
Q ss_pred eeeEEeChhHHHHHHHhhccc
Q 041418 84 INTCSIPGRCRPVLLGVASKV 104 (349)
Q Consensus 84 ~~~~~mHdli~dla~~i~~~~ 104 (349)
..+|+|||++|++|+..+.++
T Consensus 432 ~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 432 SFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SEEEECCHHHHHHHHHHTGGG
T ss_pred ceEEEecHHHHHHHHhhhhHH
Confidence 457999999999999998765
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=1.4e-11 Score=104.95 Aligned_cols=136 Identities=22% Similarity=0.227 Sum_probs=96.3
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM 230 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~ 230 (349)
+|..+ .++|++|++++|.++.+|...|+++++|++|++++|.++.+|... ..+ ++|++|++++
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------~~L~~L~Ls~---- 85 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----------TSLTYLNLST---- 85 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC----------TTCCEEECCS----
T ss_pred CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC----------CCcCEEECCC----
Confidence 55444 458999999999999998876689999999999999888887653 333 3444444420
Q ss_pred CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCC
Q 041418 231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIK 309 (349)
Q Consensus 231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~ 309 (349)
..++.+.-.....+++|+.|++++|.+...+...+ +.+++|+.|++++|. +..+|.. +..++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF----------------DKLTQLKDLRLYQNQ-LKSVPDGVFDRLT 148 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh----------------ccCCcCCEEECCCCc-cceeCHHHhccCC
Confidence 11211110000467888999999988876554333 456788999999886 7777764 78899
Q ss_pred CCCEEEecCCC
Q 041418 310 SLNKFDCWWPQ 320 (349)
Q Consensus 310 ~L~~L~l~~~~ 320 (349)
+|+.|++++|+
T Consensus 149 ~L~~L~l~~N~ 159 (208)
T 2o6s_A 149 SLQYIWLHDNP 159 (208)
T ss_dssp TCCEEECCSCC
T ss_pred CccEEEecCCC
Confidence 99999999876
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=6.3e-12 Score=116.50 Aligned_cols=129 Identities=20% Similarity=0.144 Sum_probs=86.3
Q ss_pred cccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418 154 SGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMP 231 (349)
Q Consensus 154 ~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~ 231 (349)
..+. ++++|++|++++|.++.+|...|.++++|++|+|++|.++.+|.. +..+++|++|+-.-..+..+.-..-..++
T Consensus 57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 3455 788888888888888888766558888888888888888887654 56666666665111222222100004567
Q ss_pred CccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccC
Q 041418 232 WLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCA 296 (349)
Q Consensus 232 ~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~ 296 (349)
+|+.|++++| ..+++|+.|+|++|.+...+...+..++++ .++.|++++|+
T Consensus 137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~--------------~l~~l~l~~N~ 200 (361)
T 2xot_A 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW--------------VKNGLYLHNNP 200 (361)
T ss_dssp TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH--------------HHTTEECCSSC
T ss_pred cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh--------------hcceEEecCCC
Confidence 7888888777 247899999999999987765555333211 14778888877
No 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.27 E-value=2.8e-12 Score=130.30 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=74.2
Q ss_pred HhhHHHHHhhhCCCCCCc-hhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCC
Q 041418 4 TMSLGLQCIIYCMSPFCL-KPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGG 82 (349)
Q Consensus 4 ~~i~~~L~lSY~~L~~~l-k~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~ 82 (349)
+.|..+|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++...
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~----- 421 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP----- 421 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----
Confidence 468999999999999999 99999999999999999999999999987 235889999999999999842
Q ss_pred ceeeEEeChhHHHHHH
Q 041418 83 TINTCSIPGRCRPVLL 98 (349)
Q Consensus 83 ~~~~~~mHdli~dla~ 98 (349)
...+|+|||++++++.
T Consensus 422 ~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 KESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSEEBCCCHHHHHHH
T ss_pred CCCEEEehHHHHHHhc
Confidence 1257999999999663
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=6.2e-12 Score=106.30 Aligned_cols=146 Identities=11% Similarity=0.121 Sum_probs=96.6
Q ss_pred hcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCC
Q 041418 181 SNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 181 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~ 260 (349)
+.+++|++|++++|.++.+| ++..+++|++|+ ++ .. .+..+ .....+++|+.|++++|.++..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~----------l~---~n-~~~~~--~~l~~l~~L~~L~l~~n~l~~~ 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLT----------IN---NI-HATNY--NPISGLSNLERLRIMGKDVTSD 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEE----------EE---SC-CCSCC--GGGTTCTTCCEEEEECTTCBGG
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEE----------cc---CC-CCCcc--hhhhcCCCCCEEEeECCccCcc
Confidence 67889999999999999988 576665555443 32 00 01000 0004556677777777766654
Q ss_pred CcccccCCccccccc----c----cccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhccc
Q 041418 261 PMPVLETLPLLQKAD----F----WTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFED 332 (349)
Q Consensus 261 ~~~~l~~l~~L~~L~----~----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~ 332 (349)
.+..++.+++|++|+ . .+...+.+++|+.|++++|..++.+| .+..+++|+.|++++|.- ..+. ...
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i---~~~~-~l~ 178 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV---HDYR-GIE 178 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC---CCCT-TGG
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC---cChH-Hhc
Confidence 555666667777666 1 12223568899999999998788898 599999999999999972 2222 445
Q ss_pred ccccccceeeeccccc
Q 041418 333 KEQQIPNRQSTGEMMS 348 (349)
Q Consensus 333 ~i~~ip~i~~~~~~~~ 348 (349)
.+..+..+.+.+|.++
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 5666777888887653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=2.3e-12 Score=114.15 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=110.3
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCcc
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLS 234 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~ 234 (349)
.+.++..++++++.++.++ .+ ..+++|++|++++|.++.+| .++.+++|++|+ ..++.+.. + ..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~-~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l---~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQ-KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--L---KDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CH-HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--G---TTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc-ch-hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--h---ccCCCCC
Confidence 3556777889999999988 45 89999999999999999998 577777777776 22222222 2 4566666
Q ss_pred EEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccC
Q 041418 235 KIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLW 306 (349)
Q Consensus 235 ~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~ 306 (349)
.|++++| .. ++|+.|++++|.++..+ ..+.+++|+.|++++|. +..+| .++
T Consensus 89 ~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~------------------~l~~l~~L~~L~Ls~N~-i~~~~-~l~ 147 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD------------------SLIHLKNLEILSIRNNK-LKSIV-MLG 147 (263)
T ss_dssp EEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG------------------GGTTCTTCCEEECTTSC-CCBCG-GGG
T ss_pred EEECCCCccCCcCcccc-CcccEEEccCCccCCCh------------------hhcCcccccEEECCCCc-CCCCh-HHc
Confidence 6666666 22 56777777777665421 12567899999999987 88887 589
Q ss_pred CCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418 307 CIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 307 ~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~ 347 (349)
.+++|+.|++++|.- ..+ ..+..+.++..+.+.+|.+
T Consensus 148 ~l~~L~~L~L~~N~i---~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEI---TNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GCTTCCEEECTTSCC---CBC-TTSTTCCCCCEEEEEEEEE
T ss_pred cCCCCCEEECCCCcC---cch-HHhccCCCCCEEeCCCCcc
Confidence 999999999999972 222 3344445555566665543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=2.4e-11 Score=104.57 Aligned_cols=148 Identities=13% Similarity=0.149 Sum_probs=105.3
Q ss_pred CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418 163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY 241 (349)
Q Consensus 163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~ 241 (349)
+.++++++.++.+|..+ . ++|+.|++++|.++.+|. .+..++ +|+.|+++ -..+..+.-...
T Consensus 14 ~~v~c~~~~l~~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~----------~L~~L~Ls----~N~i~~~~~~~~ 76 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYK----------KLRRIDLS----NNQISELAPDAF 76 (220)
T ss_dssp TEEECTTSCCSSCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCT----------TCCEEECC----SSCCCEECTTTT
T ss_pred CEEEcCCCCcCcCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCC----------CCCEEECC----CCcCCCcCHHHh
Confidence 67899999999999877 3 789999999999999876 344443 34444442 112222211111
Q ss_pred CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCCC
Q 041418 242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~ 320 (349)
..+++|+.|+|++|.++..+...+ ..+++|+.|++++|. +..+ |..+..+++|+.|++++|.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLF----------------EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcCCCEEECCCCcCCccCHhHc----------------cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence 567889999999998876654433 457889999999987 6666 5568899999999999997
Q ss_pred HHHHHhhhh-cccccccccceeeecccc
Q 041418 321 PELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 321 ~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
+..+.. .+..+.++..+.+.+|.+
T Consensus 140 ---l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 140 ---LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ---CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ---CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 333333 466677777888888764
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.8e-11 Score=119.78 Aligned_cols=172 Identities=19% Similarity=0.124 Sum_probs=108.2
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT 199 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l 199 (349)
.+++.|.+.++.... +|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+
T Consensus 59 ~~L~~L~Ls~n~L~~-----------------lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i 115 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----------------LPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL 115 (571)
T ss_dssp TTCSEEECCSSCCSC-----------------CCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred CCccEEEeCCCCCCc-----------------cCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc
Confidence 577777777665542 555453 67899999999988888 3468899999999988888
Q ss_pred chhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccc
Q 041418 200 VDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQK 273 (349)
Q Consensus 200 p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 273 (349)
|. +.+ +|++|+-.-.++..+. ..+++|+.|++++| ..+++|+.|++++|.++..+. +
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~lp----~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~--l-------- 178 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE--L-------- 178 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--C--------
T ss_pred ch-hhc--CCCEEECCCCcCCCCC----CcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch--h--------
Confidence 87 543 4444431101111110 12345555555555 233455566666555544221 1
Q ss_pred ccccccccccccccceeeeeccCCCCCCCcccCCCCCC-------CEEEecCCCHHHHHhhhhcccccccccceeeeccc
Q 041418 274 ADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSL-------NKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEM 346 (349)
Q Consensus 274 L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L-------~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~ 346 (349)
+ ++|+.|++++|. +..+|. +.. +| +.|++++|. +..+......+.++..+.+.+|.
T Consensus 179 --------~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 179 --------P--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR---ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --------C--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC---CCCCCGGGGGSCTTEEEECCSSS
T ss_pred --------h--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc---ceecCHHHhcCCCCCEEEeeCCc
Confidence 2 789999999986 889998 654 77 999999987 23444444556777777888876
Q ss_pred cc
Q 041418 347 MS 348 (349)
Q Consensus 347 ~~ 348 (349)
++
T Consensus 242 l~ 243 (571)
T 3cvr_A 242 LS 243 (571)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.8e-11 Score=100.57 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=75.1
Q ss_pred CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA 239 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~ 239 (349)
++|++|++++|.++.+|..+ .++++|++|++++|.++.+|....
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f----------------------------------- 74 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSF----------------------------------- 74 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTT-----------------------------------
T ss_pred CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHc-----------------------------------
Confidence 45667777777777666555 677777777777776666654210
Q ss_pred cCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecC
Q 041418 240 EYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWW 318 (349)
Q Consensus 240 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 318 (349)
..+++|+.|+|++|.++..+...+ +.+++|+.|++++|. +..+|.. +..+++|+.|++++
T Consensus 75 --~~l~~L~~L~Ls~N~l~~i~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 75 --SNMTQLLTLILSYNRLRCIPPRTF----------------DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp --TTCTTCCEEECCSSCCCBCCTTTT----------------TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred --cCCCCCCEEECCCCccCEeCHHHh----------------CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 345667777888888776654444 456788899999987 7788764 77899999999998
Q ss_pred CC
Q 041418 319 PQ 320 (349)
Q Consensus 319 ~~ 320 (349)
+|
T Consensus 136 N~ 137 (193)
T 2wfh_A 136 NP 137 (193)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.22 E-value=1.5e-11 Score=121.07 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=106.3
Q ss_pred cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc--cchhhhccccchhhh--------------hCCCCC
Q 041418 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN--------------FGLSCL 219 (349)
Q Consensus 156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~--------------~~l~~L 219 (349)
++.+++|+.|+++++....+|..+ ..+++|++|++++|.+.. ++..+..+++|++|+ ..+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 344455555555554445566655 778888888888886433 233357778888775 457888
Q ss_pred CeeeccC-----------C-----------CCCCCccEEEEccC-----------CCCCCccEEEEe----ecCCCCCCc
Q 041418 220 KSLKLAN-----------E-----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFS----NTDRMDDPM 262 (349)
Q Consensus 220 ~~L~l~~-----------~-----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~----~~~l~~~~~ 262 (349)
++|++.+ . ..+++|++|+++.+ ..+++|+.|+++ .+.+++.+.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 8888862 1 24788888888555 237889999997 345554332
Q ss_pred c-----cccCCcccccccc---c--ccc------cccccccceeeeeccCCCC--CCCcccCCCCCCCEEEecCCC
Q 041418 263 P-----VLETLPLLQKADF---W--TMG------NAAMPKLECLIINPCAYLK--KMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 263 ~-----~l~~l~~L~~L~~---~--~~~------~~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~ 320 (349)
+ .+..+++|+.|+- - ... ...+++|+.|++++|. +. .++..+..+++|++|++++|+
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 2 2455677777761 0 000 0236789999998887 43 345455778999999999997
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=4.5e-11 Score=102.86 Aligned_cols=148 Identities=7% Similarity=0.075 Sum_probs=105.1
Q ss_pred CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-h-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418 163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-E-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE 240 (349)
Q Consensus 163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~ 240 (349)
+.+++++|.++.+|..+ ...+++|++++|.++.++. . ++.++ +|+.|+++ -..++.+.-..
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~----------~L~~L~L~----~N~i~~i~~~~ 76 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLP----------QLRKINFS----NNKITDIEEGA 76 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCT----------TCCEEECC----SSCCCEECTTT
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCC----------CCCEEECC----CCcCCEECHHH
Confidence 68999999999999876 3467899999999988843 2 45444 44444442 11222221111
Q ss_pred CCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCC
Q 041418 241 YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWP 319 (349)
Q Consensus 241 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~ 319 (349)
...+++|+.|++++|.++..+...+ +.+++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMF----------------KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGG----------------TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS
T ss_pred hCCCCCCCEEECCCCccCccCHhHh----------------cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC
Confidence 1567889999999999887665444 457889999999988 5555 667899999999999998
Q ss_pred CHHHHHhhhh-cccccccccceeeecccc
Q 041418 320 QPELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 320 ~~~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
. +..+.+ .+..+..+..+.+.+|.+
T Consensus 140 ~---l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 140 Q---ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp C---CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred c---CCEECHHHhcCCCCCCEEEecCcCC
Confidence 7 333433 566677777788887765
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2.9e-11 Score=111.53 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc-cccchh-hhccccchhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI-DHTVDE-FWKMKKLRHL 212 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l-~~lp~~-i~~L~~L~~L 212 (349)
+|..+ .+++++|+|++|+|+.+|...|+++++|++|+|++|.+ +.+|.. +.++++|+.+
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 67666 36899999999999999988779999999999999965 557654 5777776654
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=3.4e-12 Score=125.71 Aligned_cols=34 Identities=18% Similarity=-0.032 Sum_probs=15.8
Q ss_pred CCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418 158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP 192 (349)
Q Consensus 158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~ 192 (349)
++++|++|++++|.+..+|..+ .++++|+.|+++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~-~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFF-KAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHH-HHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHHHHHHHH-hhhhHHHhhccc
Confidence 3444555555554444444333 444444444443
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=4e-12 Score=117.81 Aligned_cols=188 Identities=14% Similarity=0.155 Sum_probs=100.4
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhc----cCcccc---------CCcccCCC-----CCCCEEeecCCCCcccchh-H-
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICG----MFKLLR---------YPSGIENL-----FLLRYLKLNIPSLKSLSSS-L- 179 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~----~l~~L~---------lp~~i~~l-----~~L~~L~l~~~~l~~lp~~-i- 179 (349)
++++.|.+.++.........+...+. +++.|. .+..+..+ ++|++|++++|.++..+.. +
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44777777766654332222223333 334443 12333333 8899999999988865543 2
Q ss_pred --HhcC-cCCcEEeccCcCccccchh-hhc-----cccchhhh------------------hCCC-CCCeeeccCC----
Q 041418 180 --LSNL-LNLYTLDMPFSYIDHTVDE-FWK-----MKKLRHLN------------------FGLS-CLKSLKLANE---- 227 (349)
Q Consensus 180 --f~~l-~~L~~L~l~~~~l~~lp~~-i~~-----L~~L~~L~------------------~~l~-~L~~L~l~~~---- 227 (349)
|..+ ++|++|++++|.++..+.. +.. .++|++|+ ..++ +|++|+++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 1444 7899999999987776542 222 13455544 1121 4444444411
Q ss_pred ----------CCC-CCccEEEEccC---------------CCCCCccEEEEeecCCCCCCcccccCCccccccccccccc
Q 041418 228 ----------SKM-PWLSKIVLAEY---------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGN 281 (349)
Q Consensus 228 ----------~~~-~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~ 281 (349)
..+ ++|+.|++++| ...++|+.|++++|.+...+...+. ...
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~------------~~~ 249 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK------------LLK 249 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH------------HTT
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH------------HHH
Confidence 111 24444444444 0123444444444444433322211 011
Q ss_pred ccccccceeeeeccCCCCC--------CCcccCCCCCCCEEEecCCC
Q 041418 282 AAMPKLECLIINPCAYLKK--------MPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~--------lp~~l~~l~~L~~L~l~~~~ 320 (349)
..+++|+.|++++|. +.. ++..+..+++|+.|++++++
T Consensus 250 ~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 456788889998886 333 33346678888888888876
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=7.9e-11 Score=101.97 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418 120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT 199 (349)
Q Consensus 120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l 199 (349)
++++.|.+.++..... .|..++.+++|++|++++|.++.+|...|+.+++|++|++++|.++.+
T Consensus 40 ~~L~~L~Ls~n~i~~~----------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----------------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCcc----------------CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 6677777776655421 356688889999999999999999887768899999999999988888
Q ss_pred chh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCC
Q 041418 200 VDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETL 268 (349)
Q Consensus 200 p~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l 268 (349)
|.. +..+++|++| ++++ ..++.+. .+...+++|+.|++++|.+...+...+..+
T Consensus 104 ~~~~~~~l~~L~~L----------~Ls~----N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 104 PSAVFDRLVHLKEL----------FMCC----NKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEE----------ECCS----SCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhHhCcchhhCeE----------eccC----CcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 765 3444444433 3320 1111110 000355677777777777766554444333
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.1e-10 Score=96.62 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA 239 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~ 239 (349)
++|++|++++|.++.+|...|+++++|++|++++|.++.+|....
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------- 72 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF----------------------------------- 72 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-----------------------------------
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc-----------------------------------
Confidence 466777777777776666554667777777777776666654311
Q ss_pred cCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecC
Q 041418 240 EYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWW 318 (349)
Q Consensus 240 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 318 (349)
..+++|+.|++++|.++..+...+ +.+++|+.|++++|. +..+|.. +..+++|++|++++
T Consensus 73 --~~l~~L~~L~l~~N~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 73 --DKLTKLTILYLHENKLQSLPNGVF----------------DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp --TTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred --cCCCccCEEECCCCCccccCHHHh----------------hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence 345667777888888776554333 456789999999986 7788876 47799999999999
Q ss_pred CC
Q 041418 319 PQ 320 (349)
Q Consensus 319 ~~ 320 (349)
|+
T Consensus 134 N~ 135 (177)
T 2o6r_A 134 NP 135 (177)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=5.1e-11 Score=100.27 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=44.0
Q ss_pred CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418 243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 320 (349)
.+++|+.|++++|.+++.+...+ +.+++|+.|++++|...+..|..+..+++|++|++++++
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMF----------------LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSS----------------TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcccCCEEECCCCcCCccCHHHh----------------cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 45666777777777765543333 356778888888887444446678888999999998876
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=1.5e-11 Score=98.87 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCccEEEEeecCCCCCCc-ccccCCcccccccccccccccccccceeeeeccCCCCCCCc----ccCCCCCCCEEEecC
Q 041418 244 PHSLTHLSFSNTDRMDDPM-PVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE----HLWCIKSLNKFDCWW 318 (349)
Q Consensus 244 ~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~ 318 (349)
+++|+.|++++|.+++.+. ..+ +.+++|+.|++++|. +..+|. .++.+++|+.|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPL----------------KKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGG----------------GGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHH----------------hhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 4556666677776654221 111 457788888888886 666765 577788888888764
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=2.5e-11 Score=100.59 Aligned_cols=135 Identities=18% Similarity=0.123 Sum_probs=86.0
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCc-CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLL-NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWL 233 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L 233 (349)
.+.++.+|+.|++++|.++.+|. + ..+. +|++|++++|.++.+ ..++.++ +|+.|+++ -..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~----------~L~~L~Ls----~N~l 76 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLR----------RLKTLLVN----NNRI 76 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCS----------SCCEEECC----SSCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCC----------CCCEEECC----CCcc
Confidence 35566777888888887777754 3 4444 788888888877666 2343332 33333332 1112
Q ss_pred cEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc----cCCCC
Q 041418 234 SKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH----LWCIK 309 (349)
Q Consensus 234 ~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~----l~~l~ 309 (349)
..+.-.-...+++|+.|++++|.+...+. + . ..+.+++|+.|++++|+ +..+|.. ++.++
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~------~-------~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLVELGD--L------D-------PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVP 140 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCCCGGG--G------G-------GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCT
T ss_pred cccCcchhhcCCCCCEEECCCCcCCcchh--h------H-------hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCC
Confidence 22210000346788888888888754321 1 0 11467899999999988 7788875 88899
Q ss_pred CCCEEEecCCCHH
Q 041418 310 SLNKFDCWWPQPE 322 (349)
Q Consensus 310 ~L~~L~l~~~~~~ 322 (349)
+|+.|++++++.+
T Consensus 141 ~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 141 QVRVLDFQKVKLK 153 (176)
T ss_dssp TCSEETTEECCHH
T ss_pred ccceeCCCcCCHH
Confidence 9999999999843
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=8.9e-11 Score=96.34 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418 118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
..++++.|.+.++.... . .+|..++.+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.
T Consensus 22 ~~~~L~~L~l~~n~l~~---~------------~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND---G------------KIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIF 84 (168)
T ss_dssp CTTSCSEEECCSCBCBT---T------------BCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCC
T ss_pred CcccCCEEECCCCCCCh---h------------hHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCc
Confidence 34789999988876530 0 1566678888999999999988887 555 88999999999999777
Q ss_pred c-cchhhhccccchhhhhCCCCCCeeeccCC--CCCCCccEEEEccCCCCCCccEEEEeecCCCCCCc---ccccCCccc
Q 041418 198 H-TVDEFWKMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPM---PVLETLPLL 271 (349)
Q Consensus 198 ~-lp~~i~~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~l~~L 271 (349)
. +|..++.+++|++| +++++ ...+.+..+ ..+++|+.|++++|.++..+. ..+
T Consensus 85 ~~~~~~~~~l~~L~~L----------~Ls~N~l~~~~~~~~l-----~~l~~L~~L~l~~N~l~~~~~~~~~~~------ 143 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHL----------NLSGNKLKDISTLEPL-----KKLECLKSLDLFNCEVTNLNDYRESVF------ 143 (168)
T ss_dssp SCCCHHHHHCTTCCEE----------ECBSSSCCSSGGGGGG-----SSCSCCCEEECCSSGGGTSTTHHHHHH------
T ss_pred hHHHHHHhhCCCCCEE----------eccCCccCcchhHHHH-----hcCCCCCEEEeeCCcCcchHHHHHHHH------
Confidence 7 66666555554444 33210 000001111 567889999999998876553 122
Q ss_pred ccccccccccccccccceeeeeccCCCCCCCcc
Q 041418 272 QKADFWTMGNAAMPKLECLIINPCAYLKKMPEH 304 (349)
Q Consensus 272 ~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 304 (349)
..+++|+.|++++|. ..++|.+
T Consensus 144 ----------~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 144 ----------KLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp ----------TTCSSCCEETTEETT-SCBCCSS
T ss_pred ----------HhCccCcEecCCCCC-hhhcccc
Confidence 467889999999987 7777763
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=8.3e-11 Score=115.31 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE 240 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~ 240 (349)
.|++|++++|.++.+|. + +++++|++|++++|.++.+|..++++++|++| ++++ ..++.+. +
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L----------~Ls~----N~l~~lp--~ 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVL----------QASD----NALENVD--G 503 (567)
T ss_dssp TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEE----------ECCS----SCCCCCG--G
T ss_pred CceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEE----------ECCC----CCCCCCc--c
Confidence 57888999998888886 5 88999999999999888888888766554444 3321 0111111 1
Q ss_pred CCCCCCccEEEEeecCCCCCC-cccccCCcccccccccccccccccccceeeeeccCCCCCCCcccC----CCCCCCEEE
Q 041418 241 YLFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLW----CIKSLNKFD 315 (349)
Q Consensus 241 ~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~ 315 (349)
-..+++|+.|+|++|.+++.+ +..+ +.+++|+.|++++|+ +..+|+.+. .+|+|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l----------------~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPL----------------VSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGG----------------GGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHH----------------hcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 166788889999999887764 4444 567889999999987 777776443 379999986
Q ss_pred e
Q 041418 316 C 316 (349)
Q Consensus 316 l 316 (349)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=7.9e-11 Score=118.86 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=80.9
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMP 231 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~ 231 (349)
.|..+..++.|+.|+|++|.+..+|..+ .++++|++|+|++|.++.+|..+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l------------------------- 269 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNL------------------------- 269 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGG-------------------------
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCC-------------------------
Confidence 4566788888888888888888888887 68888888888888777888766433
Q ss_pred CccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCC
Q 041418 232 WLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSL 311 (349)
Q Consensus 232 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L 311 (349)
++|+.|+|++|.++..+ ..+ +.+++|+.|+|++|. ++.+|..++.+++|
T Consensus 270 -------------~~L~~L~Ls~N~l~~lp-~~~----------------~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 270 -------------SNLRVLDLSHNRLTSLP-AEL----------------GSCFQLKYFYFFDNM-VTTLPWEFGNLCNL 318 (727)
T ss_dssp -------------TTCCEEECTTSCCSSCC-SSG----------------GGGTTCSEEECCSSC-CCCCCSSTTSCTTC
T ss_pred -------------CCCCEEeCcCCcCCccC-hhh----------------cCCCCCCEEECCCCC-CCccChhhhcCCCc
Confidence 45566667777766332 222 457788888888876 78888888888889
Q ss_pred CEEEecCCC
Q 041418 312 NKFDCWWPQ 320 (349)
Q Consensus 312 ~~L~l~~~~ 320 (349)
+.|++++|+
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 999888886
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1.2e-10 Score=93.53 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=81.9
Q ss_pred CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418 118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
..++++.+.+.++.... . .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.++
T Consensus 15 ~~~~l~~L~l~~n~l~~---~------------~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE---G------------KLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVS 77 (149)
T ss_dssp CGGGCSEEECTTCBCBT---T------------BCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCC
T ss_pred CCccCeEEEccCCcCCh---h------------HHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCccc
Confidence 34678888888765530 0 1667788899999999999999888 555 89999999999999887
Q ss_pred c-cchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE-ccCCCCCCccEEEEeecCCCCCCc---ccccCCcccc
Q 041418 198 H-TVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL-AEYLFPHSLTHLSFSNTDRMDDPM---PVLETLPLLQ 272 (349)
Q Consensus 198 ~-lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~l~~L~ 272 (349)
. +|..++.+++|++| +++++ .+..+.. ..-..+++|+.|++++|.+++.+. ..++.+++|+
T Consensus 78 ~~~~~~~~~l~~L~~L----------~ls~N----~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 78 GGLEVLAEKCPNLTHL----------NLSGN----KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp SCTHHHHHHCTTCCEE----------ECTTS----CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred chHHHHhhhCCCCCEE----------ECCCC----cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 7 77766555544444 33200 1111100 000567889999999998876654 3444444444
Q ss_pred c
Q 041418 273 K 273 (349)
Q Consensus 273 ~ 273 (349)
.
T Consensus 144 ~ 144 (149)
T 2je0_A 144 Y 144 (149)
T ss_dssp E
T ss_pred c
Confidence 3
No 129
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=112.84 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=76.9
Q ss_pred HhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCCc
Q 041418 4 TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGT 83 (349)
Q Consensus 4 ~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~ 83 (349)
..|..+++.||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++||++.... +.
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~ 431 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GK 431 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CC
Confidence 4688999999999999999999999999999999999999999654 3447889999999999997653 33
Q ss_pred eeeEEeChhHHHHHHHhhc
Q 041418 84 INTCSIPGRCRPVLLGVAS 102 (349)
Q Consensus 84 ~~~~~mHdli~dla~~i~~ 102 (349)
..+|+|||++|++++....
T Consensus 432 ~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 432 SFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EEEEECCHHHHHHHHHHTG
T ss_pred ccEEEEcHHHHHHHHhhhh
Confidence 3579999999999998843
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=1.5e-10 Score=116.94 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=73.5
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMP 231 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~ 231 (349)
+|..+.++++|++|+|++|.++.+|..+ +++++|++|+|++|.++.+|..+++|++|++|+ ++++
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~----------L~~N---- 303 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY----------FFDN---- 303 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE----------CCSS----
T ss_pred CChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE----------CCCC----
Confidence 7777888999999999999999999988 999999999999999999999888777666554 3200
Q ss_pred CccEEEEccCCCCCCccEEEEeecCCCCCCcccccC
Q 041418 232 WLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLET 267 (349)
Q Consensus 232 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 267 (349)
.+..+.-. -..+++|+.|+|++|.+++.++..+..
T Consensus 304 ~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 304 MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCccChh-hhcCCCccEEeCCCCccCCCChHHHhh
Confidence 11111100 055677788888888877665555443
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.1e-09 Score=90.49 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=66.9
Q ss_pred CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418 163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY 241 (349)
Q Consensus 163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~ 241 (349)
+.++++++.++.+|..+ . ++|++|++++|.++.+|+ .+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~-------------------------------------- 53 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVF-------------------------------------- 53 (174)
T ss_dssp SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTT--------------------------------------
T ss_pred cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHh--------------------------------------
Confidence 67788888888888766 3 778888888887777744 22
Q ss_pred CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
..+++|+.|+|++|.++..+...+ +.+++|+.|++++|. +..+|.. +..+++|++|++++|+
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i~~~~~----------------~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAIPTGVF----------------DKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cCCcCCCEEECCCCCCCccChhHh----------------CCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 233455666666666665443322 345667777777765 6677664 6777788888887766
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.00 E-value=5e-11 Score=117.29 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=93.0
Q ss_pred CCCCCCCEEeecCCC--Cc--ccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh------------------
Q 041418 157 ENLFLLRYLKLNIPS--LK--SLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN------------------ 213 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~--l~--~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~------------------ 213 (349)
..+++|++|++++|. +. .++.-+ .++++|++|++++| .++.+|..+.++++|++|+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 356688888888875 22 222222 56688888888887 6666666566666555552
Q ss_pred --------------------------hCCCCCCeeeccCC-----------CCCCCccEEEEccC----------CCCCC
Q 041418 214 --------------------------FGLSCLKSLKLANE-----------SKMPWLSKIVLAEY----------LFPHS 246 (349)
Q Consensus 214 --------------------------~~l~~L~~L~l~~~-----------~~~~~L~~L~l~~~----------~~~~~ 246 (349)
..+++|++|++++. ..+++|+.|++.+| ..+++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCC
Confidence 13566677766521 46677777777776 24677
Q ss_pred ccEEEEeec---------CCCCCCccccc-CCcccccccc----c----cccc-ccccccceeeee-----ccCCCCCCC
Q 041418 247 LTHLSFSNT---------DRMDDPMPVLE-TLPLLQKADF----W----TMGN-AAMPKLECLIIN-----PCAYLKKMP 302 (349)
Q Consensus 247 L~~L~L~~~---------~l~~~~~~~l~-~l~~L~~L~~----~----~~~~-~~~~~L~~L~l~-----~c~~l~~lp 302 (349)
|+.|++..| .++...+..+. .+++|+.|.. . .... ..+++|+.|+++ +|..++..|
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 888877442 23222222222 3566666650 0 0000 246788888888 456666544
Q ss_pred c------ccCCCCCCCEEEecC
Q 041418 303 E------HLWCIKSLNKFDCWW 318 (349)
Q Consensus 303 ~------~l~~l~~L~~L~l~~ 318 (349)
. .+..+++|+.|++++
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS
T ss_pred hhhHHHHHHhhCCCccEEeecC
Confidence 2 134455666666654
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.4e-09 Score=89.46 Aligned_cols=101 Identities=21% Similarity=0.124 Sum_probs=72.1
Q ss_pred CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418 162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE 240 (349)
Q Consensus 162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~ 240 (349)
.+.+++++|.++.+|..+ .++|++|++++|.++.+++. +
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~------------------------------------- 50 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVF------------------------------------- 50 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTT-------------------------------------
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhh-------------------------------------
Confidence 467888888888888766 37888888888888877542 2
Q ss_pred CCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCC
Q 041418 241 YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWP 319 (349)
Q Consensus 241 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~ 319 (349)
..+++|+.|+|++|.++..+...+ ..+++|+.|++++|. +..+|+. +..+++|+.|+++++
T Consensus 51 -~~l~~L~~L~Ls~N~l~~l~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 51 -DRLTQLTRLDLDNNQLTVLPAGVF----------------DKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp -TTCTTCSEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred -cCcccCCEEECCCCCcCccChhhc----------------cCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 234556666777777765554333 346777888888876 7777664 777888888888887
Q ss_pred C
Q 041418 320 Q 320 (349)
Q Consensus 320 ~ 320 (349)
+
T Consensus 113 ~ 113 (170)
T 3g39_A 113 P 113 (170)
T ss_dssp C
T ss_pred C
Confidence 5
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=2.7e-10 Score=112.08 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=44.1
Q ss_pred hcCcCCcEEeccCcCccc--cchhhhccccchhhh--------------hCCCCCCeeeccC----------C-------
Q 041418 181 SNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN--------------FGLSCLKSLKLAN----------E------- 227 (349)
Q Consensus 181 ~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~----------~------- 227 (349)
..+++|++|++++|.++. ++..+.++++|++|+ ..+++|+.|++.+ .
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 456677777777775432 222245666666665 2467777776611 0
Q ss_pred ---CCCCCccEEEEccC-----------CCCCCccEEEEe
Q 041418 228 ---SKMPWLSKIVLAEY-----------LFPHSLTHLSFS 253 (349)
Q Consensus 228 ---~~~~~L~~L~l~~~-----------~~~~~L~~L~L~ 253 (349)
..+++|+.|.+..+ ..+++|+.|+++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 23677777766544 246778888887
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=91.49 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=95.9
Q ss_pred CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCC
Q 041418 163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYL 242 (349)
Q Consensus 163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~ 242 (349)
++++++++.++++|..+ ..+|++|++++|.++.+|..+..
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~------------------------------------- 52 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSN------------------------------------- 52 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGG-------------------------------------
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhc-------------------------------------
Confidence 68999999999999876 36899999999999999865542
Q ss_pred CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCH
Q 041418 243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQP 321 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~ 321 (349)
+++|+.|++++|.++..+...+ ..+++|+.|++++|. +..+|+ .+..+++|+.|++++|.
T Consensus 53 -l~~L~~L~Ls~N~i~~i~~~~f----------------~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~- 113 (193)
T 2wfh_A 53 -YKHLTLIDLSNNRISTLSNQSF----------------SNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND- 113 (193)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-
T ss_pred -ccCCCEEECCCCcCCEeCHhHc----------------cCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-
Confidence 3556677778888876654444 457889999999987 777765 58899999999999987
Q ss_pred HHHHhhhh-cccccccccceeeecccc
Q 041418 322 ELRQKLRE-FEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 322 ~~~~~l~~-~~~~i~~ip~i~~~~~~~ 347 (349)
+..+.. .+..+.++..+.+.+|-+
T Consensus 114 --l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 114 --ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp --CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred --CCeeChhhhhcCccccEEEeCCCCe
Confidence 234444 466677777888887754
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=3e-12 Score=108.35 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=47.3
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 213 (349)
+|..++.+++|++|++++|.++.+| .+ +++++|++|++++|.++.+|..+..+++|++|+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4457788888999999999888888 66 889999999999998888887666555554443
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=4.1e-09 Score=88.47 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchh-HHhcCcCCcEEeccCcCcccc-chhhhccccchhhhhCCCCCCeeeccCCCC
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSS-LLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLNFGLSCLKSLKLANESK 229 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~-if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~ 229 (349)
+|..+.. +|++|++++|.++.+|.. +|+++++|++|++++|.++.+ |..++++++|++| +++
T Consensus 23 ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L----------~Ls---- 86 (192)
T 1w8a_A 23 IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL----------QLG---- 86 (192)
T ss_dssp CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE----------ECC----
T ss_pred CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE----------ECC----
Confidence 4444433 677788888777777653 237778888888887777666 4455554444333 221
Q ss_pred CCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccc
Q 041418 230 MPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKA 274 (349)
Q Consensus 230 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 274 (349)
-..++.+.-.....+++|+.|++++|.+++..+..++.+++|++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 011111110000345566666666666655444444444444333
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=1.5e-08 Score=83.72 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=95.1
Q ss_pred CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418 162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY 241 (349)
Q Consensus 162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~ 241 (349)
.+.++++++.++.+|..+ .++|++|++++|.++.+|....
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~------------------------------------- 48 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVF------------------------------------- 48 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTT-------------------------------------
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHh-------------------------------------
Confidence 578999999999999755 4799999999998888876321
Q ss_pred CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418 242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~ 320 (349)
..+++|+.|++++|.++..+...+ +.+++|+.|++++|. +..+|.. ++.+++|++|++++|.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVF----------------DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccccEEECCCCcceEeChhHc----------------cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc
Confidence 234667777788888776554333 457889999999987 7777764 6889999999999987
Q ss_pred HHHHHhhhh-cccccccccceeeeccccc
Q 041418 321 PELRQKLRE-FEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 321 ~~~~~~l~~-~~~~i~~ip~i~~~~~~~~ 348 (349)
+..+.. .+....++..+.+.+|.++
T Consensus 112 ---l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 112 ---LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ---CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---ceEeCHHHhcCCcccCEEEecCCCee
Confidence 224444 3466777888888887653
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=8.5e-09 Score=85.16 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF 203 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i 203 (349)
+|..+. ++|++|++++|.++.+++..|+++++|++|+|++|.++.+|..+
T Consensus 27 iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 76 (174)
T 2r9u_A 27 VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV 76 (174)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH
Confidence 566554 78999999999999886655589999999999999888888753
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=2.9e-09 Score=97.10 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=122.4
Q ss_pred CCCeeEEEeecCCCC--CCCcchHHh-hhccCccccCC-cccCC--------CCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418 119 DSQLHSFLCCSPESR--HIDPIDWEK-ICGMFKLLRYP-SGIEN--------LFLLRYLKLNIPSLKSLSSSLLSNLLNL 186 (349)
Q Consensus 119 ~~~lr~l~~~~~~~~--~~~~~~~~~-~~~~l~~L~lp-~~i~~--------l~~L~~L~l~~~~l~~lp~~if~~l~~L 186 (349)
+++++.|.+.++... ......++. .+..++...+| ..|.+ +++|+.+++.+ .++.+++..|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 888999999998876 111111111 01111111244 45777 99999999999 8999999988999999
Q ss_pred cEEeccCcCccccchh-hhccccchhhh------------------hCCCCCC-eeecc-----------CCCCCCCccE
Q 041418 187 YTLDMPFSYIDHTVDE-FWKMKKLRHLN------------------FGLSCLK-SLKLA-----------NESKMPWLSK 235 (349)
Q Consensus 187 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~------------------~~l~~L~-~L~l~-----------~~~~~~~L~~ 235 (349)
+.+++++|.+..+++. +....++..+. .++.+|+ .+.+. ......++..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999988777654 45555554443 1122222 11111 0012334444
Q ss_pred EEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccc-eeeeeccCC
Q 041418 236 IVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLE-CLIINPCAY 297 (349)
Q Consensus 236 L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~-~L~l~~c~~ 297 (349)
+.+.+. ..+++|+.++++.|+++..+...|..+++|+.+. .. ..+. ..+++|+ .+.+.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--c
Confidence 554443 1367788888888777777767777777777776 10 0111 2455677 777776 4
Q ss_pred CCCCCc-ccCCCCCCCEEEecCCC
Q 041418 298 LKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 298 l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
+..++. .+..+++|+.+++.++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSC
T ss_pred ceEEchhhhhCCccCCEEEeCCCc
Confidence 677764 47778888888886655
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=6.8e-09 Score=85.75 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=69.3
Q ss_pred CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418 116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY 187 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~ 187 (349)
..++++++.|.+.++.....+ .+.....+++.|. + +.++.+++|++|++++|.++.+|+.+|+.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345778899998887765321 1122222444443 2 4566666777777777777666665556677777
Q ss_pred EEeccCcCccccch--hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC-------------CCCCCccEEEE
Q 041418 188 TLDMPFSYIDHTVD--EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY-------------LFPHSLTHLSF 252 (349)
Q Consensus 188 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~-------------~~~~~L~~L~L 252 (349)
+|++++|.++.+|. .++. +++|+.|++++| ..+++|+.|++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~------------------------l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLAS------------------------LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGG------------------------CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred EEECCCCcCCcchhhHhhhc------------------------CCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 77777776666665 3333 334444444444 34678888888
Q ss_pred eecCC
Q 041418 253 SNTDR 257 (349)
Q Consensus 253 ~~~~l 257 (349)
+.|..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 88764
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=6.6e-10 Score=93.79 Aligned_cols=123 Identities=17% Similarity=0.177 Sum_probs=82.8
Q ss_pred CCCEEeecCC--CCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418 161 LLRYLKLNIP--SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL 238 (349)
Q Consensus 161 ~L~~L~l~~~--~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l 238 (349)
.|+...+.++ .++.+|..+ +++++|++|++++|.++.+| .+.++++|++|+ ++++ .+..+.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~----------l~~n----~l~~l~- 86 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILS----------LGRN----LIKKIE- 86 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEE----------EEEE----EECSCS-
T ss_pred chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEE----------CCCC----Cccccc-
Confidence 3556666654 577788777 99999999999999888888 676655444442 2100 000000
Q ss_pred ccC-CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc--ccCCCCCCCEEE
Q 041418 239 AEY-LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFD 315 (349)
Q Consensus 239 ~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~ 315 (349)
.. ..+++|+.|++++|.+++.+ .+ +.+++|+.|++++|. +..+|. .+..+++|++|+
T Consensus 87 -~~~~~~~~L~~L~L~~N~l~~l~--~~----------------~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 87 -NLDAVADTLEELWISYNQIASLS--GI----------------EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp -SHHHHHHHCSEEEEEEEECCCHH--HH----------------HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred -chhhcCCcCCEEECcCCcCCcCC--cc----------------ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 00 23467888888888876421 22 457788888888876 776654 578888899999
Q ss_pred ecCCC
Q 041418 316 CWWPQ 320 (349)
Q Consensus 316 l~~~~ 320 (349)
+++|+
T Consensus 147 l~~N~ 151 (198)
T 1ds9_A 147 LAGNP 151 (198)
T ss_dssp ECSCH
T ss_pred ecCCc
Confidence 98887
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=2e-08 Score=82.53 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=39.5
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF 203 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i 203 (349)
+|..+. ++|++|++++|.++.+++..|+++++|++|++++|.++.+|+..
T Consensus 24 ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 24 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh
Confidence 555553 77889999999998886654588999999999999888887753
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=5.3e-08 Score=89.24 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=16.7
Q ss_pred EeecCC-CCcccchhHHhcCcCCcEEeccC-cCccccc
Q 041418 165 LKLNIP-SLKSLSSSLLSNLLNLYTLDMPF-SYIDHTV 200 (349)
Q Consensus 165 L~l~~~-~l~~lp~~if~~l~~L~~L~l~~-~~l~~lp 200 (349)
++.+++ .++.+|. + +.+++|++|+|++ |.++.+|
T Consensus 13 v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~l~~~~ 48 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-L-PGAENLTELYIENQQHLQHLE 48 (347)
T ss_dssp EECCSSCCCTTTTT-S-CSCSCCSEEECCSCSSCCEEC
T ss_pred EEcCCCCCCCccCC-C-CCCCCeeEEEccCCCCCCCcC
Confidence 344444 4555554 3 5555555555553 4444444
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.4e-07 Score=84.83 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCcccCCCCCCCEEeecC-CCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh
Q 041418 152 YPSGIENLFLLRYLKLNI-PSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN 213 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~-~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 213 (349)
+|. +..+++|++|+|++ |.++.+|+..|+++++|++|+|++|.++.+|+ .+++|++|++|+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 788 99999999999996 99999987666999999999999998888866 456555444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=1.7e-08 Score=93.78 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=41.3
Q ss_pred CCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeecc
Q 041418 230 MPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPC 295 (349)
Q Consensus 230 ~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c 295 (349)
.++|+.|++++| ...++|++|+|++|.+.......+. ......++|+.|++++|
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~------------~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA------------AQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH------------HHGGGCSCCCEEECCSS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH------------HHHhcCCCcCeEECCCC
Confidence 455666666666 3466788888888876543211110 00022345666666666
Q ss_pred CCCCC-----CCcccCCCCCCCEEEecCCC
Q 041418 296 AYLKK-----MPEHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 296 ~~l~~-----lp~~l~~l~~L~~L~l~~~~ 320 (349)
. ++. ++..+...++|++|++++|+
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5 332 22233345666666666665
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=2.2e-06 Score=80.16 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=83.1
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCC-CCCCeeeccCCCCCCC
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGL-SCLKSLKLANESKMPW 232 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l-~~L~~L~l~~~~~~~~ 232 (349)
+|.++++|+.+++++|.++.+|...|. ..+|+.+.+..+ ++.++. .+.++++|+.+. + .+++.+.-. .....+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~--l~~~l~~I~~~-aF~~~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE--IPENVSTIGQE-AFRESG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE--CCTTCCEECTT-TTTTCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe--cCCCccCcccc-ccccCC
Confidence 355566666666666666666666544 456666666533 444433 234444444443 0 011111100 011146
Q ss_pred ccEEEEccC---------CCCCCccEEEEeecCCC-----CCCcccccCCccccccc---cc-cccc---ccccccceee
Q 041418 233 LSKIVLAEY---------LFPHSLTHLSFSNTDRM-----DDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLI 291 (349)
Q Consensus 233 L~~L~l~~~---------~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~ 291 (349)
|+.+.+..+ ..+++|+.+.+.++... ..+...|..+++|+.+. .. .... ..+++|+.+.
T Consensus 250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence 666666443 56777888888776654 23334566667776665 00 0111 2345677777
Q ss_pred eeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418 292 INPCAYLKKMPE-HLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 292 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~ 320 (349)
+.+ ++..++. .+..+ +|+.+.+.++.
T Consensus 330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 330 IPA--NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred ECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 754 2566654 35666 77777776654
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.3e-06 Score=79.39 Aligned_cols=158 Identities=10% Similarity=-0.036 Sum_probs=88.6
Q ss_pred cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC----ccccc-hhhhccccch------------------
Q 041418 154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY----IDHTV-DEFWKMKKLR------------------ 210 (349)
Q Consensus 154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~----l~~lp-~~i~~L~~L~------------------ 210 (349)
.+|.++++|+.+++++|.+..+++..|..+.++.++....+. ...+. ..+..+.+|+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 458889999999999999999998888888888877765521 11110 0111122222
Q ss_pred --------hhh--------------hCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCC
Q 041418 211 --------HLN--------------FGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETL 268 (349)
Q Consensus 211 --------~L~--------------~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l 268 (349)
.+. ..+++|+.+++.++ +++.+.-.-...+.+|+.+++..| +...+...|..+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT----NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB----CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC----CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence 111 23788888888511 233322111133444444444443 333333444555
Q ss_pred cccc-ccc------ccc-cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEe
Q 041418 269 PLLQ-KAD------FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDC 316 (349)
Q Consensus 269 ~~L~-~L~------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 316 (349)
++|+ .+. .+. .....+++|+.+++.++..-.--+..+.++++|+.++.
T Consensus 273 ~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 5554 433 000 11256677777777666555555566778888888763
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=8.6e-07 Score=81.78 Aligned_cols=177 Identities=17% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCCCCeeEEEeecCCCCC-CCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCC----------cccchhHHhcCc
Q 041418 116 DDYDSQLHSFLCCSPESRH-IDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSL----------KSLSSSLLSNLL 184 (349)
Q Consensus 116 ~~~~~~lr~l~~~~~~~~~-~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l----------~~lp~~if~~l~ 184 (349)
..+..+++.|++-...... ........ +..++..+++|+.|.+.+... ..++.-+ ..++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~---------L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P 172 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADG---------IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMP 172 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHH---------HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCT
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHH---------HHHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCC
Confidence 4455677788776544320 00011111 234455667788887765422 1244444 7888
Q ss_pred CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEcc-------C----
Q 041418 185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAE-------Y---- 241 (349)
Q Consensus 185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~-------~---- 241 (349)
+|+.|++++|.-..+|. + .+++|++|. +... ..+|+|+.|+|+. .
T Consensus 173 ~L~~L~L~g~~~l~l~~-~-~~~~L~~L~----------L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK-K-PRPNLKSLE----------IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp TCCEEEEECCBTCBCCS-C-BCTTCSEEE----------EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred CCcEEEEeCCCCceecc-c-cCCCCcEEE----------EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 99999998872123443 2 234343332 2100 1233333333320 0
Q ss_pred --------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCC-----CCcccCCC
Q 041418 242 --------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKK-----MPEHLWCI 308 (349)
Q Consensus 242 --------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~l~~l 308 (349)
..+++|+.|++.+|.+.......+ ...+.+++|+.|+++.|. ++. ++.++..+
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-------------a~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-------------LESDILPQLETMDISAGV-LTDEGARLLLDHVDKI 306 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-------------HHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-------------HhCccCCCCCEEECCCCC-CChHHHHHHHhhcccC
Confidence 124555666665555432111111 111357899999998765 544 44445668
Q ss_pred CCCCEEEecCCC--HHHHHhhh
Q 041418 309 KSLNKFDCWWPQ--PELRQKLR 328 (349)
Q Consensus 309 ~~L~~L~l~~~~--~~~~~~l~ 328 (349)
++|+.|++++|. ++..+.+.
T Consensus 307 ~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 307 KHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TTCSEEECCSBBCCHHHHHHHH
T ss_pred CcceEEECCCCcCCHHHHHHHH
Confidence 899999998886 33444443
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.20 E-value=1.1e-05 Score=75.34 Aligned_cols=156 Identities=8% Similarity=0.012 Sum_probs=98.7
Q ss_pred CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL 238 (349)
Q Consensus 159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l 238 (349)
..+|+.+.+..+ ++.++...|.++.+|+.+++..+ ++.++.....-.+|+.+.- -.+++.+.-..=..|++|+.+.+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence 589999999854 88999988899999999999875 5666554322245555430 00111111000045666776666
Q ss_pred ccC---------------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccceeeeeccC
Q 041418 239 AEY---------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLIINPCA 296 (349)
Q Consensus 239 ~~~---------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~l~~c~ 296 (349)
.++ ..+++|+.+.+. +++.......|..+++|+.+. .. ..+. ..+ +|+.+.+.++.
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCC
Confidence 443 557788888887 446555566777888887776 10 0111 234 79999999876
Q ss_pred CCCCCCc-ccCCCC-CCCEEEecCCC
Q 041418 297 YLKKMPE-HLWCIK-SLNKFDCWWPQ 320 (349)
Q Consensus 297 ~l~~lp~-~l~~l~-~L~~L~l~~~~ 320 (349)
...++. .+..++ +++.|.+-...
T Consensus 357 -~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 357 -PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -CcccccccccCCCCCccEEEeCHHH
Confidence 555654 355564 78889885544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=1.6e-06 Score=79.96 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=41.8
Q ss_pred ccccccceeeeeccCCCCCCCcc---cCCCCCCCEEEecCCC--HHHHHhhhhcccccccccceeeeccccc
Q 041418 282 AAMPKLECLIINPCAYLKKMPEH---LWCIKSLNKFDCWWPQ--PELRQKLREFEDKEQQIPNRQSTGEMMS 348 (349)
Q Consensus 282 ~~~~~L~~L~l~~c~~l~~lp~~---l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~i~~ip~i~~~~~~~~ 348 (349)
+.+|+|+.|.+.+|......+.. ...+++|+.|+++.|. ..-...+........++..+.++.|.++
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35899999999988743222211 1357899999998876 1111222222245667777777777765
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=9.6e-06 Score=66.45 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=29.1
Q ss_pred cccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCC
Q 041418 285 PKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQ 320 (349)
Q Consensus 285 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 320 (349)
++|+.|++++|.+++.-- ..+..+++|+.|++++|+
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 579999999998776421 126678999999999998
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.78 E-value=4.5e-06 Score=77.32 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCCCEEeecCCCCccc-chhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCC----------
Q 041418 160 FLLRYLKLNIPSLKSL-SSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANE---------- 227 (349)
Q Consensus 160 ~~L~~L~l~~~~l~~l-p~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~---------- 227 (349)
++|+.|+|++|.++.. ...++..+.+|++|+|++|.++.... .+... |....++|++|+++++
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-----L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-----LLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-----HHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-----HHhcCCccceeeCCCCCCChHHHHHH
Confidence 4566666666665421 11221344566666666665543211 11100 0012234444444411
Q ss_pred ----CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCC
Q 041418 228 ----SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD 260 (349)
Q Consensus 228 ----~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~ 260 (349)
..+++|+.|++++| ...++|+.|+|++|.++..
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 33556777777766 3456788888888877643
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.57 E-value=0.0009 Score=62.05 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=21.1
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~ 194 (349)
+|.++++|+.+.+.++ +..++...|.++.+|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 3455556666666443 34455555556666666655443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=0.00013 Score=59.65 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCcccCCCCCCCEEeecCCCCcccc-hhHHhcCcCCcEEeccCc-Cccc
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLS-SSLLSNLLNLYTLDMPFS-YIDH 198 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp-~~if~~l~~L~~L~l~~~-~l~~ 198 (349)
+|.....-.+|+.||+++|.++... ..+ ..+++|++|+|++| .++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence 4443323346889999998877432 334 78889999999988 5654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=0.00023 Score=62.43 Aligned_cols=48 Identities=27% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCCCCCCEEeecCCCCcccc---hhHHhcCcCCcEEeccCcCccccchhhhcc
Q 041418 157 ENLFLLRYLKLNIPSLKSLS---SSLLSNLLNLYTLDMPFSYIDHTVDEFWKM 206 (349)
Q Consensus 157 ~~l~~L~~L~l~~~~l~~lp---~~if~~l~~L~~L~l~~~~l~~lp~~i~~L 206 (349)
.++++|+.|+|++|.++.++ ..+ +.+++|++|+|++|.++.+. .+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l 217 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKI 217 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhc
Confidence 45788999999999888655 444 88999999999999888763 24443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.10 E-value=0.016 Score=53.50 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccceee
Q 041418 228 SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLI 291 (349)
Q Consensus 228 ~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~ 291 (349)
..+..|+.+.+... ..+.+|+.+.+. +.+...+...|..+.+|+.+. .. .... ..+.+|+.+.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred eecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence 44566666665433 456667777764 334444445677777777765 10 0111 2356788888
Q ss_pred eeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418 292 INPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM 347 (349)
Q Consensus 292 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~ 347 (349)
+.+ .+..++. .+.++++|+.+++.+....+ ..+..-..+..+.+..+..
T Consensus 341 ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPS--SVTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred ECc--ccCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 854 3677765 47888999999998765322 1223334455555554443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.04 E-value=0.00066 Score=56.04 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=11.0
Q ss_pred CCCCccEEEEeecCCC
Q 041418 243 FPHSLTHLSFSNTDRM 258 (349)
Q Consensus 243 ~~~~L~~L~L~~~~l~ 258 (349)
..++|+.|++++|.+.
T Consensus 149 ~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 149 KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCCSSHH
T ss_pred hCCCcCEEeccCCCCC
Confidence 3467788888777653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.97 E-value=0.0082 Score=55.49 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=81.6
Q ss_pred ccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-------------hCCCCCCeeeccCC--------CCCC
Q 041418 174 SLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-------------FGLSCLKSLKLANE--------SKMP 231 (349)
Q Consensus 174 ~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-------------~~l~~L~~L~l~~~--------~~~~ 231 (349)
.++...|.++.+|+.+.+.++ +..++. .+..+.+|+.+. .++..|+.+.+.+. ....
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 344555678888888888654 334443 355666666654 34455555544311 2334
Q ss_pred CccEEEEccC---------CCCCCccEEEEeecCCCC--------------------CCcccccCCccccccc---cc-c
Q 041418 232 WLSKIVLAEY---------LFPHSLTHLSFSNTDRMD--------------------DPMPVLETLPLLQKAD---FW-T 278 (349)
Q Consensus 232 ~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~--------------------~~~~~l~~l~~L~~L~---~~-~ 278 (349)
.|+.+.+... ....+|+.+.+..+...- .+...+..+.+|+.+. .. .
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~ 310 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKF 310 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCE
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccce
Confidence 5555554432 344555555554432110 0111233334444333 00 0
Q ss_pred ccc---ccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecc
Q 041418 279 MGN---AAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGE 345 (349)
Q Consensus 279 ~~~---~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~ 345 (349)
.+. ..+.+|+.+.+.+ .+..++. .+..+++|+.+.+... +..+.. .|.....+..|.+..+
T Consensus 311 I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS----LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT----CCEECTTTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc----ccEehHHHhhCCCCCCEEEECCC
Confidence 111 2345677777753 2566654 4667788888877432 223333 4555555555555433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.96 E-value=0.00067 Score=59.46 Aligned_cols=60 Identities=23% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCcccCCCCCCCEEeecCCCCcccchhHHhcCc--CCcEEeccCcCcc-ccch-------hhhccccchhhh
Q 041418 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL--NLYTLDMPFSYID-HTVD-------EFWKMKKLRHLN 213 (349)
Q Consensus 152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~--~L~~L~l~~~~l~-~lp~-------~i~~L~~L~~L~ 213 (349)
+|..++.+++|++|+|++|.++.+. .+ ..+. +|++|++++|.+. .+|. .+..+++|+.|+
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred chhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4455678999999999999999873 34 5555 9999999999664 3442 245555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.04 E-value=0.0045 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418 161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI 196 (349)
Q Consensus 161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l 196 (349)
+|++|+|++|.|+.+|..+|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 588999999999999888878899999999988843
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.98 E-value=0.05 Score=49.68 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=16.4
Q ss_pred ccccceeeeeccCCCCCCCc-ccCCCCCCCEEEe
Q 041418 284 MPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDC 316 (349)
Q Consensus 284 ~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 316 (349)
+++|+.+.+.++. +..++. .+.++++|+.+.+
T Consensus 285 c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence 3455555555433 444443 2455556666655
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.86 E-value=0.0026 Score=52.39 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCCCeeEEEeecC-CCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEec
Q 041418 118 YDSQLHSFLCCSP-ESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDM 191 (349)
Q Consensus 118 ~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l 191 (349)
..+.++.|.+.++ ... ...... +...+...++|++|+|++|.+.. +...+ ...++|++|+|
T Consensus 34 ~~~~L~~L~L~~n~~i~---~~g~~~---------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L 100 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIP---VPTLKA---------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNV 100 (185)
T ss_dssp TCTTCCEEECTTCTTCC---HHHHHH---------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEEC
T ss_pred cCCCCCEEEecCCCCCC---HHHHHH---------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEEC
Confidence 3568899998876 553 111111 22345566788999999998863 44445 67788999999
Q ss_pred cCcCcccc-----chhhhccccchhhhhCCCCCCeeec--cCC--------------CCCCCccEEEEccC
Q 041418 192 PFSYIDHT-----VDEFWKMKKLRHLNFGLSCLKSLKL--ANE--------------SKMPWLSKIVLAEY 241 (349)
Q Consensus 192 ~~~~l~~l-----p~~i~~L~~L~~L~~~l~~L~~L~l--~~~--------------~~~~~L~~L~l~~~ 241 (349)
++|.++.- ...+. ..++|++|++ .++ ...++|++|++++|
T Consensus 101 ~~N~i~~~g~~~l~~~L~----------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 101 ESNFISGSGILALVEALQ----------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCCHHHHHHHHHGGG----------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCcCCHHHHHHHHHHHH----------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 99977652 22222 3456777777 411 44578888888776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.39 E-value=0.016 Score=44.66 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=32.0
Q ss_pred CEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418 163 RYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEF 203 (349)
Q Consensus 163 ~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i 203 (349)
..++.+++.++ .+|..+ ..+|++|+|++|.++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~ 50 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGL 50 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTT
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhh
Confidence 47888999998 999755 457999999999999998754
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.24 E-value=0.087 Score=48.49 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=22.9
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD 201 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~ 201 (349)
+|.++..|+.+.+..+ +..++...|.++.+|+.+.+.. .+..++.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~ 304 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPE 304 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCc
Confidence 3455556666665443 3344444455566666665532 3444443
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.96 E-value=0.66 Score=42.07 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=40.3
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhh
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHL 212 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 212 (349)
++.++..|+.+.+.. .++.++...|..+.+|+.+.+.++.++.++.. +.++.+|+.+
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 456677888888865 47778887778888999998887777777653 4444444333
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.87 E-value=1.6 Score=35.92 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=22.2
Q ss_pred CCCCCCEEeecCC-CCcc-----cchhHHhcCcCCcEEeccCcCcc
Q 041418 158 NLFLLRYLKLNIP-SLKS-----LSSSLLSNLLNLYTLDMPFSYID 197 (349)
Q Consensus 158 ~l~~L~~L~l~~~-~l~~-----lp~~if~~l~~L~~L~l~~~~l~ 197 (349)
+-+.|+.|+|+++ .|.. +-+.+ ..-+.|+.|+|++|.++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCC
Confidence 3455667777664 5531 33333 55566777777777555
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=49.69 E-value=13 Score=30.32 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=44.2
Q ss_pred CCCeeEEEeecC-CCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCc-----ccchhHHhcCcCCcEEecc
Q 041418 119 DSQLHSFLCCSP-ESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLK-----SLSSSLLSNLLNLYTLDMP 192 (349)
Q Consensus 119 ~~~lr~l~~~~~-~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~-----~lp~~if~~l~~L~~L~l~ 192 (349)
-+.++.|.+.++ ... ...... +-..+..=+.|+.|+|++|.+. .+-+.+ ..-+.|++|+|+
T Consensus 40 n~~L~~L~L~~nn~ig---d~ga~~---------la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~ 106 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVS---KERIRS---------LIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVE 106 (197)
T ss_dssp CSSCCEEECTTCCSSC---HHHHHH---------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECC
T ss_pred CCCccEEECCCCCCCC---HHHHHH---------HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecC
Confidence 357888888654 332 111111 1123445578999999999986 344444 677899999999
Q ss_pred CcCccc
Q 041418 193 FSYIDH 198 (349)
Q Consensus 193 ~~~l~~ 198 (349)
+|.++.
T Consensus 107 ~N~Ig~ 112 (197)
T 1pgv_A 107 SNFLTP 112 (197)
T ss_dssp SSBCCH
T ss_pred CCcCCH
Confidence 998874
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=44.77 E-value=9.8 Score=34.40 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=44.2
Q ss_pred HHHHhhhCCCCCCchhHHhHhccCC--CCceecHHHHHHHHH--H---cCCCCCCHHHHHHHHHHHHHhCCceeeee
Q 041418 8 GLQCIIYCMSPFCLKPCFLYFSVFP--AHLEISTRHVYQLWI--A---EGFIEDNNEATAKKYLEQLINRGFVEANK 77 (349)
Q Consensus 8 ~~L~lSY~~L~~~lk~cFl~~a~Fp--~~~~i~~~~Li~~wi--a---~g~i~~~~~~~~~~~~~~L~~~sll~~~~ 77 (349)
..+.-+++.||++.|.++..+|.++ .+..++..++...|. + .|. ..........++++|++.++|....
T Consensus 297 ~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3455567889999999999888764 334566666665542 2 232 1112344567899999999998764
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.39 E-value=36 Score=24.19 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=23.6
Q ss_pred ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS 194 (349)
Q Consensus 155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~ 194 (349)
+|.++..|+.+.+..+ ++.+....|.++.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4555666666666543 55565555666777776666543
No 171
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=26.91 E-value=80 Score=22.93 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=47.0
Q ss_pred hHhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeec
Q 041418 3 LTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKR 78 (349)
Q Consensus 3 l~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~ 78 (349)
|+.|...++=.-.+++...+.+++ ..||.- |.-.++|.+.+..+.+. ..+.|..+-..|++.++|+++.+
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~--~~~~~c--F~GselVdWLi~~~~~~--~R~EAv~lgq~Ll~~G~i~hV~d 77 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDK--KVFNHC--LTGSGVIDWLVSNKLVR--NRQEGLMISASLLSEGYLQPAGD 77 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSS--CEEEEE--CCHHHHHHHHHHHTSSS--SHHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHhCCCCCceeeeeEECC--EEcccc--ccchHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCeEEeCcc
Confidence 345556666666677665555543 222221 24668899888888774 45668888899999999999864
No 172
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.58 E-value=23 Score=20.45 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=7.5
Q ss_pred ccCCCCcee
Q 041418 29 SVFPAHLEI 37 (349)
Q Consensus 29 a~Fp~~~~i 37 (349)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 688999886
Done!