BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041419
(498 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 334 bits (857), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 199/499 (39%), Positives = 291/499 (58%), Gaps = 23/499 (4%)
Query: 1 MQSTKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDXXXXXXXXXXX 60
M+ +K PH+ ++ SPGMGHLIP+VE KRLV H + VT FV+A
Sbjct: 1 MEESK-TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVT-FVIAGEGPPSKAQRTVLDS 58
Query: 61 XXXXXXXXTLPLANISSLVNPDASLGEKILVLMHKSLPALRSAISAM---KFRPTALIVD 117
LP +++ L + + +I + + +S P LR + PTAL+VD
Sbjct: 59 LPSSISSVFLPPVDLTDLSS-STRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 118 FFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFNLEKPMELPGCMP 177
FGT+A DVA EF + Y+F + A L+ F+H P +D+ + + E L +P+ LPGC+P
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETV-SCEFRELTEPLMLPGCVP 176
Query: 178 VRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVC 237
V +D L+ + + ++ + ++GILVNT+ +LEP + +L++ L
Sbjct: 177 VAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGL----D 232
Query: 238 KAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQM 297
K PVY +GPLV + T+ S L WL+ QP SV+YVSFGSGGTL+ +Q+
Sbjct: 233 KPPVYPVGPLVNIGKQEAKQTEESE------CLKWLDNQPLGSVLYVSFGSGGTLTCEQL 286
Query: 298 TELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLV 357
ELA L S+QRF+WV+R P + SY D++S +LP GFL RT K G V
Sbjct: 287 NELALGLADSEQRFLWVIRSP-SGIANSSYF---DSHSQTDPLTFLPPGFLERTKKRGFV 342
Query: 358 VPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGV 417
+P WAPQA++LAHPS GGFL+HCGWNST+ES+V+G+P+IAWPL+AEQKMNA +L+E+I
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRA 402
Query: 418 AFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSL 477
A R + + LV R+E+ +V+ +M +EG +R + ELK A + + G+S K+L
Sbjct: 403 ALRPRA-GDDGLVRREEVARVVKGLMEGEEG-KGVRNKMKELKEAACRVLKDDGTSTKAL 460
Query: 478 SQVAKQCEKSLQELVTLGQ 496
S VA + + +EL G
Sbjct: 461 SLVALKWKAHKKELEQNGN 479
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 237/490 (48%), Gaps = 45/490 (9%)
Query: 1 MQSTKLKPHICLLASPGMGHLIPVVELGKRLVAH-HDVQVTVFVVASHDDXXXXXXXXXX 59
M + + +PG+GHL +E K L H ++ +TVF +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIK----FPGMPFADSY 58
Query: 60 XXXXXXXXXTLPLANISSLVNPDASLGEK----ILVLMHKSLPALRSAI-SAMKFRPTAL 114
+ L ++ + P L + IL + +P +++ I + + + L
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
Query: 115 IVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFNLEKPMELPG 174
++DFF +DV +EFG+ Y+F+ SN FL+ + + + D+ + + +PG
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 175 CMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLG 234
+ L + + + + + GI+VNT+ DLE ++ +L D +
Sbjct: 179 ISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD--E 236
Query: 235 RVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGG-TLS 293
++ P+YA+GPL+ +P + D +IL WL+EQP +SV+++ FGS G +
Sbjct: 237 KI--PPIYAVGPLLDLKGQPNPKLDQAQHD---LILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 294 AKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDK 353
Q+ E+A L+ S RF+W +NSA K P GFL +
Sbjct: 292 PSQIREIALGLKHSGVRFLW-------------------SNSAEK--KVFPEGFLEWMEL 330
Query: 354 VGL-VVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLT 412
G ++ WAPQ E+LAH ++GGF+SHCGWNS +ES+ GVP++ WP++AEQ++NA L
Sbjct: 331 EGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390
Query: 413 EE--IGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNS 470
+E +G+ R +V +EIE ++ +M DK+ S + + E+K ++ A +
Sbjct: 391 KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKD--SIVHKKVQEMKEMSRNAVVDG 447
Query: 471 GSSYKSLSQV 480
GSS S+ ++
Sbjct: 448 GSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/490 (27%), Positives = 237/490 (48%), Gaps = 45/490 (9%)
Query: 1 MQSTKLKPHICLLASPGMGHLIPVVELGKRLVAH-HDVQVTVFVVASHDDXXXXXXXXXX 59
M + + +PG+GHL +E K L H ++ +TVF +
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIK----FPGMPFADSY 58
Query: 60 XXXXXXXXXTLPLANISSLVNPDASLGEK----ILVLMHKSLPALRSAI-SAMKFRPTAL 114
+ L ++ + P L + IL + +P +++ I + + + L
Sbjct: 59 IKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGL 118
Query: 115 IVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFNLEKPMELPG 174
++DFF +DV +EFG+ Y+F+ SN FL+ + + + D+ + + +PG
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG 178
Query: 175 CMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLG 234
+ L + + + + + GI+VNT+ DLE ++ +L D +
Sbjct: 179 ISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD--E 236
Query: 235 RVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGG-TLS 293
++ P+YA+GPL+ +P + D +IL WL+EQP +SV+++ FGS G +
Sbjct: 237 KI--PPIYAVGPLLDLKGQPNPKLDQAQHD---LILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 294 AKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDK 353
Q+ E+A L+ S RF+W +NSA K P GFL +
Sbjct: 292 PSQIREIALGLKHSGVRFLW-------------------SNSAEK--KVFPEGFLEWMEL 330
Query: 354 VGL-VVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLT 412
G ++ WAPQ E+LAH ++GGF+SHCGWNS +ES+ GVP++ WP++AEQ++NA L
Sbjct: 331 EGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390
Query: 413 EE--IGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNS 470
+E +G+ R +V +EIE ++ +M DK+ S + + E+K ++ A +
Sbjct: 391 KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKD--SIVHKKVQEMKEMSRNAVVDG 447
Query: 471 GSSYKSLSQV 480
GSS S+ ++
Sbjct: 448 GSSLISVGKL 457
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 192/388 (49%), Gaps = 49/388 (12%)
Query: 112 TALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIH---------APAIDKKLLTDE 162
T L+ D + + A+EF L ++ +S+A L +H P D+ LT+
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 163 HFNLEKPME-LPGCMPVRFQDSLELF--LHPNEPIFDFISSIGMKMSLSDGILVNTWDDL 219
LE ++ +PG R +D ++ +PN+ + +F + +++ IL+NT+++L
Sbjct: 180 C--LETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNEL 237
Query: 220 EPKTLGSLRDDNLLGRVCKAPVYAIGPL----VRSPDVAS-PSTKTSPSDSRVIILDWLN 274
E + +L +Y IGPL ++P + S ++ LDWL
Sbjct: 238 ESDVINALSST-------IPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLE 290
Query: 275 EQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNN 334
+ SV+YV+FGS ++ +Q+ E AW L ++ F+W++RP + + GS +
Sbjct: 291 SKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLV--IGGSVI------ 342
Query: 335 SAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVP 394
F GL+ +W PQ ++L HPS+GGFL+HCGWNST ESI GVP
Sbjct: 343 --------FSSEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVP 393
Query: 395 MIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRV 454
M+ WP A+Q + + E + + ++ V R+E+ L+ +++ +G ++
Sbjct: 394 MLCWPFFADQPTDCRFICNEWEIG-----MEIDTNVKREELAKLINEVIAGDKG-KKMKQ 447
Query: 455 RAMELKYGAQKATSNSGSSYKSLSQVAK 482
+AMELK A++ T G SY +L++V K
Sbjct: 448 KAMELKKKAEENTRPGGCSYMNLNKVIK 475
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 175/383 (45%), Gaps = 65/383 (16%)
Query: 110 RP-TALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKL-------LTD 161
RP + L+ D F A D+A E G+ F + L+ ++ I +K+ D
Sbjct: 111 RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRED 170
Query: 162 EHFNLEKPMELPGCMPVRFQDSLE--LFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDL 219
E N +PG VRF+D E +F + N + +G + + + +N++++L
Sbjct: 171 ELLNF-----IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 220 EPKTLGSLRDDNLLGRVCKAPVY-AIGP--LVRSPDVASPSTKTSPSDSRVIILDWLNEQ 276
+ L+ K Y IGP L+ P V +T L WL E+
Sbjct: 226 DDSLTNDLKS--------KLKTYLNIGPFNLITPPPVVPNTTGC---------LQWLKER 268
Query: 277 PSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSA 336
SV+Y+SFG+ T ++ L+ +LE S+ FIW +R
Sbjct: 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR-------------------- 308
Query: 337 GKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMI 396
K +LP GFL +T G+VVP WAPQAE+LAH +VG F++HCGWNS ES+ GVP+I
Sbjct: 309 DKARVHLPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
Query: 397 AWPLHAEQKMNATMLTE--EIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRV 454
P +Q++N M+ + EIGV + T+ + +I+ ++G +R
Sbjct: 368 CRPFFGDQRLNGRMVEDVLEIGVRIEG------GVFTKSGLMSCFDQILSQEKG-KKLRE 420
Query: 455 RAMELKYGAQKATSNSGSSYKSL 477
L+ A +A GSS ++
Sbjct: 421 NLRALRETADRAVGPKGSSTENF 443
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 173/376 (46%), Gaps = 50/376 (13%)
Query: 112 TALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFNLEKPME 171
T L+ D F D+A+E + L ++ I +K + E +++
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDV 178
Query: 172 LPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDD 230
LPG ++ D E + + P + +G+++ ++ + +N++ + P L
Sbjct: 179 LPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSK 238
Query: 231 NLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGG 290
L + +GP ++ +P K S L+WL++ + SV+Y+SFGS
Sbjct: 239 FKL-------LLNVGPF----NLTTPQRKVSDEHG---CLEWLDQHENSSVVYISFGSVV 284
Query: 291 TLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTR 350
T ++T LA SLE FIW R G ++ LP GFL R
Sbjct: 285 TPPPHELTALAESLEECGFPFIWSFR--------------------GDPKEKLPKGFLER 324
Query: 351 TDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATM 410
T G +V AWAPQ EIL H SVG FL+H GWNS +E IV GVPMI+ P +Q +N T+
Sbjct: 325 TKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN-TI 382
Query: 411 LTE---EIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKAT 467
LTE EIGV + L ES+ E+ M E +R + ++LK A KA
Sbjct: 383 LTESVLEIGVGVDNGVLTKESIKKALELTM-------SSEKGGIMRQKIVKLKESAFKAV 435
Query: 468 SNSGSS---YKSLSQV 480
+G+S + +L Q+
Sbjct: 436 EQNGTSAMDFTTLIQI 451
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 361 WAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTE 413
W PQ +IL S F++H G ST+E++ N VPM+A P AEQ MNA + E
Sbjct: 312 WVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 361 WAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMN 407
W PQ ++L HP F++H G N E+I +G+P + PL A+Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 361 WAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR 420
W PQ IL + F++H G + E + PMIA P +Q NA ML + +GVA
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGVA-- 344
Query: 421 SKELPTE------------SLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459
++L TE +LV E+ +R+I + R RA +L
Sbjct: 345 -RKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR-RAADL 393
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 388 SIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKE 447
SIV G+ + PLH A + +EIG + + L +Q I ++
Sbjct: 202 SIVAGISALKGPLHGGANYEALKMFKEIGSPEKVNDYILNRLSNKQRIMGFGHRV----- 256
Query: 448 GHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEK 486
+ + RA LK A+ G +L Q+A++ E+
Sbjct: 257 -YKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEE 294
>pdb|4DX9|A Chain A, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|0 Chain 0, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|KK Chain k, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|MM Chain m, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|1 Chain 1, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|C Chain C, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|2 Chain 2, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|E Chain E, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|3 Chain 3, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|G Chain G, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|OO Chain o, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|QQ Chain q, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|I Chain I, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|4 Chain 4, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|K Chain K, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|5 Chain 5, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|M Chain M, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|O Chain O, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|AA Chain a, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|SS Chain s, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|UU Chain u, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|CC Chain c, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|EE Chain e, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|GG Chain g, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|II Chain i, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|Q Chain Q, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|S Chain S, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|U Chain U, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|W Chain W, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|WW Chain w, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|Y Chain Y, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
pdb|4DX9|YY Chain y, Icap1 In Complex With Integrin Beta 1 Cytoplasmic Tail
Length = 157
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 156 KKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSD 209
+KL E LE P++L + V QD F+ P E +S G+K+S SD
Sbjct: 29 EKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIXGVSKYGIKVSTSD 82
>pdb|3T30|B Chain B, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|E Chain E, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|D Chain D, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|A Chain A, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|C Chain C, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|H Chain H, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|I Chain I, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|J Chain J, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|F Chain F, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|G Chain G, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
Length = 110
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 297 MTELAWSLELSQQRFIWVVRPPVENDVSGSYL 328
+T + W ELSQ+R W RP +E S L
Sbjct: 2 VTTVLWGCELSQERRTWTFRPQLEGKQSCRLL 33
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 360 AWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWP 399
+W PQA +L H V + H G +T+ ++ GVP +++P
Sbjct: 298 SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 9 HICLLASPGMGHLIPVVEL--GKRLVAHHDVQVTV 41
+ ++SPG+GHL P+++L G R A HDV + V
Sbjct: 22 RVLFVSSPGIGHLFPLIQLAWGFR-TAGHDVLIAV 55
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group I222
Length = 398
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 9 HICLLASPGMGHLIPVVEL--GKRLVAHHDVQVTV 41
+ ++SPG+GHL P+++L G R A HDV + V
Sbjct: 22 RVLFVSSPGIGHLFPLIQLAWGFR-TAGHDVLIAV 55
>pdb|1CT8|B Chain B, Catalytic Antibody 7c8 Complex
pdb|1CT8|D Chain D, Catalytic Antibody 7c8 Complex
Length = 220
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 257 STKTSPSDSRVIILDWLNEQPSQSVIYVSF---GSGGTLSAKQMTELA 301
S KTS ++WL ++P QS+ ++++ GSGGT+ + T+ A
Sbjct: 21 SCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKA 68
>pdb|4DX8|A Chain A, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|B Chain B, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|D Chain D, Icap1 In Complex With Krit1 N-terminus
pdb|4DX8|E Chain E, Icap1 In Complex With Krit1 N-terminus
Length = 154
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 156 KKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSD 209
+KL E LE P++L + V QD F+ P E +S G+K+S SD
Sbjct: 26 EKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSD 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,637,977
Number of Sequences: 62578
Number of extensions: 536340
Number of successful extensions: 1368
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 23
length of query: 498
length of database: 14,973,337
effective HSP length: 103
effective length of query: 395
effective length of database: 8,527,803
effective search space: 3368482185
effective search space used: 3368482185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)