Query 041419
Match_columns 498
No_of_seqs 127 out of 1400
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 4.8E-70 1E-74 557.4 46.4 473 6-498 4-481 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 1.1E-67 2.4E-72 537.0 46.6 460 6-484 2-466 (470)
3 PLN02555 limonoid glucosyltran 100.0 1.7E-67 3.8E-72 540.0 47.5 464 1-496 1-479 (480)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.7E-67 8.1E-72 535.7 47.7 440 1-486 1-450 (451)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.1E-67 1.1E-71 538.3 46.5 456 1-488 1-473 (477)
6 PLN00164 glucosyltransferase; 100.0 1.2E-66 2.6E-71 537.3 45.5 460 5-488 1-475 (480)
7 PLN02173 UDP-glucosyl transfer 100.0 8.2E-66 1.8E-70 523.5 45.9 426 7-485 5-447 (449)
8 PLN02210 UDP-glucosyl transfer 100.0 1.6E-65 3.4E-70 525.8 45.8 442 1-486 1-455 (456)
9 PLN02562 UDP-glycosyltransfera 100.0 4.6E-65 1E-69 521.8 46.4 435 4-484 3-447 (448)
10 PLN02534 UDP-glycosyltransfera 100.0 4.2E-65 9.2E-70 523.1 46.1 457 3-486 4-486 (491)
11 PLN02208 glycosyltransferase f 100.0 2.3E-65 4.9E-70 521.3 43.6 425 5-488 2-441 (442)
12 PLN02207 UDP-glycosyltransfera 100.0 7E-65 1.5E-69 518.5 46.0 449 5-486 1-465 (468)
13 PLN03004 UDP-glycosyltransfera 100.0 6.2E-65 1.3E-69 517.3 42.1 441 5-475 1-450 (451)
14 PLN02670 transferase, transfer 100.0 2.1E-64 4.6E-69 515.5 44.8 447 4-488 3-467 (472)
15 PLN02152 indole-3-acetate beta 100.0 2.8E-64 6E-69 513.1 43.9 437 5-484 1-454 (455)
16 PLN02764 glycosyltransferase f 100.0 3.8E-64 8.2E-69 509.6 44.0 428 6-490 4-449 (453)
17 PLN02554 UDP-glycosyltransfera 100.0 6.4E-64 1.4E-68 518.9 44.0 454 7-488 2-480 (481)
18 PLN00414 glycosyltransferase f 100.0 1.5E-63 3.2E-68 508.6 43.6 425 4-487 1-441 (446)
19 PLN02448 UDP-glycosyltransfera 100.0 7.6E-63 1.6E-67 509.1 46.2 444 3-486 6-457 (459)
20 PLN03007 UDP-glucosyltransfera 100.0 1.3E-62 2.9E-67 509.8 44.8 449 6-486 4-480 (482)
21 PLN02167 UDP-glycosyltransfera 100.0 3.3E-62 7.1E-67 505.5 44.5 453 5-486 1-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.4E-44 1.4E-48 370.8 32.6 378 8-465 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 4.6E-46 9.9E-51 392.4 7.3 381 9-464 2-424 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 1.9E-41 4.1E-46 347.6 23.6 367 8-464 1-386 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 2.3E-41 5E-46 345.7 23.6 364 13-465 1-375 (392)
26 KOG1192 UDP-glucuronosyl and U 100.0 2E-40 4.4E-45 349.3 22.5 406 7-464 5-437 (496)
27 COG1819 Glycosyl transferases, 100.0 4.3E-38 9.2E-43 318.8 24.1 387 7-483 1-397 (406)
28 PRK12446 undecaprenyldiphospho 99.9 3.3E-25 7.1E-30 221.8 29.1 315 8-446 2-326 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 1.5E-22 3.2E-27 200.4 27.3 325 8-457 1-336 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 2.7E-22 5.8E-27 199.2 24.3 303 8-442 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.8E-20 6.1E-25 184.7 25.8 84 355-448 230-317 (321)
32 PRK00726 murG undecaprenyldiph 99.8 5.7E-17 1.2E-21 163.7 30.1 341 8-484 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.5E-16 5.4E-21 158.5 27.0 325 9-456 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.7 3.3E-15 7.2E-20 150.1 26.1 87 363-456 243-332 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.4E-15 3.1E-20 154.4 21.8 352 8-481 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.6 1E-13 2.2E-18 141.2 25.3 145 278-455 201-348 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 1.3E-13 2.8E-18 133.7 19.7 104 280-410 171-278 (279)
38 PRK00025 lpxB lipid-A-disaccha 99.6 1.6E-13 3.4E-18 139.8 21.3 107 364-483 255-374 (380)
39 COG4671 Predicted glycosyl tra 99.5 4.9E-12 1.1E-16 120.1 22.6 337 1-446 1-366 (400)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 6.7E-15 1.4E-19 131.9 -0.9 137 281-446 1-145 (167)
41 PRK13608 diacylglycerol glucos 99.4 1.5E-11 3.2E-16 125.6 22.0 167 277-486 200-371 (391)
42 PLN02605 monogalactosyldiacylg 99.4 9.7E-11 2.1E-15 119.4 22.1 81 354-445 265-347 (382)
43 TIGR03492 conserved hypothetic 99.3 4.8E-10 1E-14 114.2 25.7 79 356-445 281-364 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 1.3E-12 2.8E-17 113.2 4.3 120 10-142 1-132 (139)
45 PLN02871 UDP-sulfoquinovose:DA 99.2 2.4E-08 5.1E-13 104.6 31.5 140 281-459 264-414 (465)
46 cd03814 GT1_like_2 This family 99.2 2.8E-08 6.1E-13 99.5 30.8 90 354-456 247-343 (364)
47 cd03794 GT1_wbuB_like This fam 99.1 2.1E-07 4.5E-12 93.7 29.5 96 353-461 274-381 (394)
48 PRK10307 putative glycosyl tra 99.1 1.6E-06 3.4E-11 89.4 35.9 118 354-489 284-410 (412)
49 cd03823 GT1_ExpE7_like This fa 99.0 8.3E-07 1.8E-11 88.5 30.8 81 354-447 243-331 (359)
50 cd03816 GT1_ALG1_like This fam 99.0 9.6E-07 2.1E-11 91.0 29.4 123 5-138 1-128 (415)
51 cd03800 GT1_Sucrose_synthase T 99.0 1E-06 2.2E-11 89.9 29.1 93 354-459 283-382 (398)
52 PRK05749 3-deoxy-D-manno-octul 98.9 3.1E-07 6.8E-12 95.0 25.3 86 365-460 314-403 (425)
53 COG3980 spsG Spore coat polysa 98.9 1.2E-07 2.6E-12 88.0 19.4 132 281-445 160-293 (318)
54 cd04962 GT1_like_5 This family 98.9 2.3E-06 4.9E-11 86.5 30.9 92 355-459 254-350 (371)
55 cd03817 GT1_UGDG_like This fam 98.9 2.1E-06 4.6E-11 85.9 30.4 95 354-462 259-360 (374)
56 cd03808 GT1_cap1E_like This fa 98.9 2.3E-06 4.9E-11 85.0 29.5 93 354-459 246-343 (359)
57 cd03801 GT1_YqgM_like This fam 98.9 2.1E-06 4.6E-11 85.3 28.8 90 354-456 256-352 (374)
58 PF04007 DUF354: Protein of un 98.9 2.4E-06 5.2E-11 84.2 28.1 103 16-138 8-110 (335)
59 cd03818 GT1_ExpC_like This fam 98.8 1.5E-05 3.3E-10 81.6 31.4 95 353-458 280-379 (396)
60 TIGR03449 mycothiol_MshA UDP-N 98.8 2.5E-05 5.3E-10 80.2 32.8 92 354-458 283-381 (405)
61 cd03820 GT1_amsD_like This fam 98.8 9E-06 1.9E-10 80.3 28.2 93 355-459 236-333 (348)
62 cd03825 GT1_wcfI_like This fam 98.8 2.3E-05 4.9E-10 78.8 31.1 91 355-458 245-343 (365)
63 cd03795 GT1_like_4 This family 98.7 5E-06 1.1E-10 83.3 25.4 98 353-460 243-347 (357)
64 cd03821 GT1_Bme6_like This fam 98.7 2.3E-05 4.9E-10 78.4 28.7 91 354-459 262-359 (375)
65 cd03798 GT1_wlbH_like This fam 98.7 4.4E-05 9.5E-10 76.1 29.0 80 354-446 259-345 (377)
66 cd03805 GT1_ALG2_like This fam 98.6 6.7E-05 1.4E-09 76.5 29.2 92 354-459 280-378 (392)
67 cd03796 GT1_PIG-A_like This fa 98.6 7E-05 1.5E-09 76.8 29.0 113 354-488 250-369 (398)
68 TIGR00236 wecB UDP-N-acetylglu 98.6 1.9E-06 4.1E-11 87.3 16.7 106 354-482 255-363 (365)
69 cd03799 GT1_amsK_like This is 98.6 5.2E-05 1.1E-09 75.8 26.6 92 354-458 236-340 (355)
70 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 6.5E-06 1.4E-10 83.2 19.6 135 278-446 197-338 (363)
71 cd03819 GT1_WavL_like This fam 98.5 0.00013 2.7E-09 73.1 27.7 98 354-462 246-348 (355)
72 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00049 1.1E-08 76.7 33.7 95 354-459 548-651 (1050)
73 cd03811 GT1_WabH_like This fam 98.5 8.6E-05 1.9E-09 73.3 25.8 80 354-446 246-333 (353)
74 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00052 1.1E-08 71.4 32.2 92 355-457 318-418 (439)
75 cd03822 GT1_ecORF704_like This 98.5 0.00028 6.1E-09 70.5 29.4 91 354-458 247-347 (366)
76 cd03802 GT1_AviGT4_like This f 98.4 0.00015 3.3E-09 71.9 25.8 80 353-445 223-308 (335)
77 cd03807 GT1_WbnK_like This fam 98.4 0.00031 6.6E-09 69.9 27.8 78 355-447 252-334 (365)
78 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.0001 2.2E-09 73.2 23.2 79 376-464 327-405 (419)
79 cd05844 GT1_like_7 Glycosyltra 98.3 0.00034 7.3E-09 70.5 26.4 92 354-458 245-349 (367)
80 PRK14089 ipid-A-disaccharide s 98.3 1.3E-05 2.7E-10 79.8 15.3 91 363-462 228-331 (347)
81 cd03812 GT1_CapH_like This fam 98.3 0.0002 4.3E-09 71.8 24.4 80 355-448 250-334 (358)
82 PRK09922 UDP-D-galactose:(gluc 98.3 0.00014 3E-09 73.5 23.2 96 354-461 236-342 (359)
83 cd04951 GT1_WbdM_like This fam 98.3 0.0015 3.1E-08 65.4 28.5 77 354-445 245-326 (360)
84 PLN02846 digalactosyldiacylgly 98.2 0.00064 1.4E-08 70.1 24.7 73 358-446 288-364 (462)
85 TIGR02470 sucr_synth sucrose s 98.2 0.01 2.2E-07 64.9 34.4 131 5-137 253-414 (784)
86 cd04955 GT1_like_6 This family 98.1 0.0026 5.7E-08 63.7 27.7 78 353-447 247-332 (363)
87 PLN00142 sucrose synthase 98.1 0.0038 8.3E-08 68.3 28.8 111 26-138 319-438 (815)
88 PRK01021 lpxB lipid-A-disaccha 98.1 0.0012 2.5E-08 69.5 23.2 93 365-462 483-588 (608)
89 TIGR03088 stp2 sugar transfera 98.1 0.0031 6.7E-08 63.9 26.0 110 355-484 256-370 (374)
90 TIGR02149 glgA_Coryne glycogen 98.1 0.016 3.4E-07 58.9 31.3 113 359-485 266-385 (388)
91 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.00042 9.2E-09 70.0 18.7 131 279-444 201-338 (365)
92 cd03809 GT1_mtfB_like This fam 98.0 0.00067 1.4E-08 67.8 19.9 90 353-457 252-348 (365)
93 KOG3349 Predicted glycosyltran 98.0 3.1E-05 6.8E-10 65.1 7.8 117 281-421 5-132 (170)
94 PF02684 LpxB: Lipid-A-disacch 98.0 0.0027 5.8E-08 63.7 22.7 103 363-474 253-365 (373)
95 PLN02275 transferase, transfer 97.9 0.034 7.5E-07 56.4 29.5 75 354-443 286-371 (371)
96 PRK15179 Vi polysaccharide bio 97.9 0.034 7.4E-07 60.6 30.7 95 354-459 574-673 (694)
97 PRK00654 glgA glycogen synthas 97.8 0.0064 1.4E-07 63.7 23.8 70 366-444 352-427 (466)
98 TIGR03087 stp1 sugar transfera 97.8 0.0035 7.5E-08 64.2 21.1 92 353-459 279-376 (397)
99 COG0763 LpxB Lipid A disacchar 97.8 0.0055 1.2E-07 60.5 21.1 204 241-483 158-378 (381)
100 PF02350 Epimerase_2: UDP-N-ac 97.8 0.00013 2.9E-09 73.0 9.8 132 277-445 178-318 (346)
101 cd03792 GT1_Trehalose_phosphor 97.7 0.014 2.9E-07 59.2 23.6 89 355-458 253-350 (372)
102 cd04946 GT1_AmsK_like This fam 97.7 0.00091 2E-08 68.8 14.9 112 353-481 288-406 (407)
103 PLN02501 digalactosyldiacylgly 97.6 0.16 3.4E-06 54.6 29.0 76 356-447 603-683 (794)
104 COG0381 WecB UDP-N-acetylgluco 97.5 0.015 3.2E-07 57.6 19.7 71 360-445 271-341 (383)
105 PF00534 Glycos_transf_1: Glyc 97.5 0.0011 2.5E-08 58.9 10.8 91 355-458 74-171 (172)
106 COG5017 Uncharacterized conser 97.4 0.0023 4.9E-08 53.1 10.3 110 282-422 2-122 (161)
107 TIGR02095 glgA glycogen/starch 97.4 0.1 2.2E-06 54.8 25.5 77 355-444 347-436 (473)
108 PF13844 Glyco_transf_41: Glyc 97.3 0.0026 5.7E-08 65.2 12.6 145 277-448 282-433 (468)
109 PLN02316 synthase/transferase 97.2 0.59 1.3E-05 53.0 31.1 106 366-485 915-1032(1036)
110 PRK15427 colanic acid biosynth 97.2 0.013 2.8E-07 60.2 16.2 111 354-484 279-403 (406)
111 cd03806 GT1_ALG11_like This fa 97.2 0.095 2E-06 54.1 22.4 79 354-446 305-393 (419)
112 PRK15484 lipopolysaccharide 1, 97.1 0.022 4.9E-07 57.9 17.1 113 354-486 257-377 (380)
113 cd03791 GT1_Glycogen_synthase_ 97.0 0.39 8.5E-06 50.3 25.6 71 366-445 366-442 (476)
114 cd03804 GT1_wbaZ_like This fam 96.9 0.0065 1.4E-07 60.9 10.9 137 283-457 198-339 (351)
115 PLN02949 transferase, transfer 96.9 0.75 1.6E-05 48.1 32.1 115 354-489 335-459 (463)
116 PF13692 Glyco_trans_1_4: Glyc 96.7 0.0089 1.9E-07 50.8 8.1 79 354-445 53-135 (135)
117 cd04949 GT1_gtfA_like This fam 96.3 0.044 9.5E-07 55.3 11.9 98 355-462 262-362 (372)
118 cd01635 Glycosyltransferase_GT 96.2 0.44 9.6E-06 43.5 17.6 26 17-43 12-37 (229)
119 PRK09814 beta-1,6-galactofuran 96.2 0.022 4.7E-07 56.9 9.0 109 355-482 208-331 (333)
120 COG1817 Uncharacterized protei 96.1 1.5 3.2E-05 42.3 23.8 110 13-141 5-114 (346)
121 cd03813 GT1_like_3 This family 96.0 0.31 6.6E-06 51.3 16.6 91 354-457 354-454 (475)
122 TIGR02918 accessory Sec system 95.9 0.18 3.9E-06 53.3 14.3 100 354-460 376-481 (500)
123 cd04950 GT1_like_1 Glycosyltra 95.7 0.45 9.7E-06 48.2 16.0 78 354-446 254-341 (373)
124 KOG4626 O-linked N-acetylgluco 95.7 0.16 3.4E-06 53.0 12.2 123 277-422 756-888 (966)
125 TIGR02193 heptsyl_trn_I lipopo 95.5 1.1 2.4E-05 44.3 17.9 41 9-49 1-42 (319)
126 PF13477 Glyco_trans_4_2: Glyc 95.4 0.18 3.9E-06 42.8 10.2 102 9-138 1-106 (139)
127 PF06722 DUF1205: Protein of u 95.1 0.032 6.9E-07 44.5 4.3 55 266-320 27-86 (97)
128 PF13579 Glyco_trans_4_4: Glyc 94.1 0.12 2.5E-06 44.7 5.9 96 23-138 6-103 (160)
129 COG3914 Spy Predicted O-linked 93.9 1.3 2.7E-05 46.3 13.4 179 277-492 427-615 (620)
130 PF13524 Glyco_trans_1_2: Glyc 93.8 0.56 1.2E-05 36.7 8.9 83 379-481 9-91 (92)
131 PRK10125 putative glycosyl tra 93.8 9.2 0.0002 39.2 23.8 38 8-46 1-40 (405)
132 PRK10017 colanic acid biosynth 93.5 1.5 3.3E-05 45.1 13.6 70 366-446 323-393 (426)
133 PHA01633 putative glycosyl tra 93.2 4.7 0.0001 40.1 16.0 83 355-445 202-307 (335)
134 PRK15490 Vi polysaccharide bio 92.8 15 0.00033 39.0 24.2 62 354-422 455-521 (578)
135 PRK14098 glycogen synthase; Pr 91.8 3.5 7.6E-05 43.5 14.0 117 354-486 362-485 (489)
136 PF12000 Glyco_trans_4_3: Gkyc 91.1 3 6.5E-05 37.0 10.6 91 33-138 1-95 (171)
137 PF01975 SurE: Survival protei 90.7 1.3 2.8E-05 40.4 8.1 39 8-48 1-39 (196)
138 TIGR02201 heptsyl_trn_III lipo 90.3 14 0.0003 36.8 16.1 106 9-136 1-108 (344)
139 PF13439 Glyco_transf_4: Glyco 90.2 2.9 6.3E-05 36.4 10.0 100 17-141 11-111 (177)
140 PF06258 Mito_fiss_Elm1: Mitoc 89.9 11 0.00025 37.0 14.5 60 361-422 219-281 (311)
141 PF08660 Alg14: Oligosaccharid 88.3 3.7 8.1E-05 36.5 9.0 118 12-138 2-128 (170)
142 TIGR02400 trehalose_OtsA alpha 85.5 6.6 0.00014 41.0 10.5 103 360-485 342-455 (456)
143 PHA01630 putative group 1 glyc 81.9 4.6 9.9E-05 40.2 7.3 76 361-446 197-295 (331)
144 cd03788 GT1_TPS Trehalose-6-Ph 80.4 9 0.0002 40.0 9.2 104 358-484 345-459 (460)
145 PLN02939 transferase, transfer 80.2 29 0.00063 39.3 13.2 83 354-444 837-930 (977)
146 PRK02261 methylaspartate mutas 79.2 3.4 7.4E-05 35.3 4.6 52 5-57 1-52 (137)
147 cd02067 B12-binding B12 bindin 78.0 15 0.00033 30.1 8.2 36 9-45 1-36 (119)
148 COG0859 RfaF ADP-heptose:LPS h 75.7 88 0.0019 31.0 16.5 106 7-136 1-107 (334)
149 COG1618 Predicted nucleotide k 75.1 16 0.00035 32.0 7.5 41 5-46 3-43 (179)
150 PF02441 Flavoprotein: Flavopr 73.4 4.9 0.00011 33.8 4.0 41 8-50 1-41 (129)
151 COG1703 ArgK Putative periplas 73.1 22 0.00047 34.5 8.5 119 4-136 48-171 (323)
152 TIGR00087 surE 5'/3'-nucleotid 71.7 38 0.00083 32.0 9.9 100 24-139 16-128 (244)
153 PF02951 GSH-S_N: Prokaryotic 71.5 7.4 0.00016 32.3 4.5 38 8-46 1-41 (119)
154 PRK10916 ADP-heptose:LPS hepto 71.5 35 0.00076 34.0 10.4 104 8-136 1-106 (348)
155 TIGR03713 acc_sec_asp1 accesso 71.3 5.8 0.00013 42.1 4.8 87 355-459 410-502 (519)
156 PRK10964 ADP-heptose:LPS hepto 71.2 18 0.00039 35.7 8.1 41 8-48 1-42 (322)
157 cd00561 CobA_CobO_BtuR ATP:cor 71.0 62 0.0014 28.4 10.4 102 9-121 4-106 (159)
158 KOG2941 Beta-1,4-mannosyltrans 70.8 1.2E+02 0.0025 30.3 14.1 130 3-144 8-142 (444)
159 TIGR02398 gluc_glyc_Psyn gluco 70.4 89 0.0019 32.9 13.2 110 356-487 364-483 (487)
160 PF05159 Capsule_synth: Capsul 70.3 41 0.00089 32.2 10.2 42 356-400 185-226 (269)
161 TIGR00715 precor6x_red precorr 70.0 49 0.0011 31.5 10.4 93 8-138 1-99 (256)
162 PRK05986 cob(I)alamin adenolsy 68.9 72 0.0016 28.9 10.6 105 6-121 21-126 (191)
163 PRK06321 replicative DNA helic 67.6 12 0.00026 39.2 6.2 49 9-57 228-276 (472)
164 PRK05595 replicative DNA helic 67.3 11 0.00025 39.1 6.0 49 8-57 202-251 (444)
165 COG4370 Uncharacterized protei 67.0 24 0.00053 34.1 7.4 81 358-448 299-382 (412)
166 PRK08506 replicative DNA helic 66.8 12 0.00026 39.3 6.0 49 8-57 193-241 (472)
167 PRK08760 replicative DNA helic 65.4 14 0.00031 38.7 6.3 50 8-57 230-279 (476)
168 cd01425 RPS2 Ribosomal protein 65.2 11 0.00025 34.1 4.8 35 108-142 125-161 (193)
169 PRK05973 replicative DNA helic 64.8 25 0.00055 33.1 7.2 46 8-54 65-110 (237)
170 COG0496 SurE Predicted acid ph 64.0 53 0.0012 31.1 9.0 97 24-140 16-126 (252)
171 PRK08305 spoVFB dipicolinate s 64.0 11 0.00024 34.2 4.5 41 5-46 3-43 (196)
172 PRK08006 replicative DNA helic 63.8 18 0.00039 37.9 6.6 50 8-58 225-275 (471)
173 PTZ00445 p36-lilke protein; Pr 63.7 14 0.00031 33.8 5.0 114 19-138 74-205 (219)
174 PRK05636 replicative DNA helic 63.3 8.9 0.00019 40.5 4.3 50 8-57 266-315 (505)
175 PLN03063 alpha,alpha-trehalose 62.9 34 0.00074 38.5 9.0 101 366-488 371-479 (797)
176 PRK10422 lipopolysaccharide co 61.6 85 0.0018 31.3 10.9 107 7-136 5-113 (352)
177 PRK13932 stationary phase surv 60.5 78 0.0017 30.2 9.6 117 5-139 3-133 (257)
178 COG0438 RfaG Glycosyltransfera 60.4 1.5E+02 0.0033 27.9 17.0 79 354-445 257-342 (381)
179 TIGR03600 phage_DnaB phage rep 59.9 17 0.00038 37.4 5.7 48 9-57 196-244 (421)
180 cd03793 GT1_Glycogen_synthase_ 59.2 35 0.00076 36.5 7.7 79 363-445 467-552 (590)
181 cd01974 Nitrogenase_MoFe_beta 59.2 91 0.002 32.3 10.8 36 98-138 367-402 (435)
182 PRK06718 precorrin-2 dehydroge 59.0 55 0.0012 29.9 8.2 116 356-481 56-180 (202)
183 PRK08840 replicative DNA helic 58.9 24 0.00051 36.9 6.4 51 8-58 218-268 (464)
184 PF02310 B12-binding: B12 bind 58.6 19 0.00042 29.4 4.8 37 8-45 1-37 (121)
185 PRK07773 replicative DNA helic 58.4 24 0.00051 40.3 6.8 50 8-57 218-267 (886)
186 PRK14099 glycogen synthase; Pr 58.2 30 0.00065 36.4 7.2 39 5-46 1-47 (485)
187 PF06925 MGDG_synth: Monogalac 57.3 35 0.00075 30.1 6.5 44 93-138 74-123 (169)
188 PRK12311 rpsB 30S ribosomal pr 57.2 19 0.00041 35.5 5.1 35 108-142 150-186 (326)
189 PRK06904 replicative DNA helic 57.0 23 0.00051 37.1 6.0 51 8-58 222-272 (472)
190 COG0052 RpsB Ribosomal protein 57.0 32 0.0007 32.3 6.2 35 108-142 154-190 (252)
191 PRK05748 replicative DNA helic 55.7 26 0.00057 36.5 6.2 49 8-57 204-253 (448)
192 PRK13935 stationary phase surv 55.3 1E+02 0.0022 29.3 9.4 23 24-48 16-38 (253)
193 PHA02542 41 41 helicase; Provi 54.4 16 0.00035 38.2 4.3 43 9-52 192-234 (473)
194 PF04127 DFP: DNA / pantothena 54.4 9.6 0.00021 34.4 2.3 39 7-46 3-53 (185)
195 cd03789 GT1_LPS_heptosyltransf 53.7 50 0.0011 31.6 7.5 41 9-49 1-42 (279)
196 PRK09165 replicative DNA helic 53.5 31 0.00067 36.5 6.3 49 9-57 219-281 (497)
197 TIGR00665 DnaB replicative DNA 53.4 27 0.00059 36.1 5.9 50 8-57 196-245 (434)
198 PF04413 Glycos_transf_N: 3-De 53.2 39 0.00083 30.5 6.1 101 9-138 22-125 (186)
199 PRK10490 sensor protein KdpD; 53.0 38 0.00082 38.7 7.4 43 4-47 21-63 (895)
200 PF04464 Glyphos_transf: CDP-G 52.8 13 0.00029 37.4 3.4 114 355-481 253-368 (369)
201 TIGR00725 conserved hypothetic 52.5 95 0.0021 27.2 8.3 39 362-400 82-123 (159)
202 TIGR02195 heptsyl_trn_II lipop 52.5 89 0.0019 30.8 9.3 102 9-135 1-104 (334)
203 KOG0202 Ca2+ transporting ATPa 52.1 1.4E+02 0.003 33.4 10.7 165 280-488 572-751 (972)
204 PF12146 Hydrolase_4: Putative 51.3 35 0.00076 25.9 4.7 36 7-43 15-50 (79)
205 PRK06749 replicative DNA helic 51.2 39 0.00084 35.0 6.5 50 8-58 187-236 (428)
206 COG2894 MinD Septum formation 51.0 42 0.00091 31.1 5.8 36 9-45 3-40 (272)
207 PRK13933 stationary phase surv 50.9 1.5E+02 0.0033 28.2 9.9 23 24-48 16-38 (253)
208 cd01980 Chlide_reductase_Y Chl 50.8 1.4E+02 0.0029 30.8 10.5 94 9-138 282-375 (416)
209 COG0003 ArsA Predicted ATPase 50.5 1.7E+02 0.0037 29.0 10.5 40 8-48 2-42 (322)
210 cd00550 ArsA_ATPase Oxyanion-t 49.8 78 0.0017 30.0 8.0 36 10-46 3-38 (254)
211 PF00551 Formyl_trans_N: Formy 49.7 55 0.0012 29.2 6.6 107 8-140 1-110 (181)
212 PF01075 Glyco_transf_9: Glyco 49.7 76 0.0016 29.6 7.9 99 278-398 104-208 (247)
213 TIGR02919 accessory Sec system 49.2 47 0.001 34.5 6.7 79 355-446 330-412 (438)
214 PRK14099 glycogen synthase; Pr 49.1 26 0.00056 36.9 4.9 68 370-445 369-447 (485)
215 cd03789 GT1_LPS_heptosyltransf 48.8 1.3E+02 0.0027 28.8 9.4 32 364-398 192-223 (279)
216 PF01012 ETF: Electron transfe 48.6 99 0.0022 26.9 8.0 96 24-138 20-121 (164)
217 PF07429 Glyco_transf_56: 4-al 48.3 1.9E+02 0.0041 28.9 10.2 81 355-444 246-332 (360)
218 TIGR02015 BchY chlorophyllide 48.2 65 0.0014 33.3 7.6 95 8-138 286-380 (422)
219 KOG0853 Glycosyltransferase [C 48.2 18 0.00039 37.7 3.4 63 384-455 381-443 (495)
220 PF00862 Sucrose_synth: Sucros 47.9 37 0.00079 35.5 5.5 119 17-138 295-431 (550)
221 PRK07004 replicative DNA helic 47.5 46 0.00099 34.8 6.4 48 9-57 215-263 (460)
222 PRK08155 acetolactate synthase 47.3 1.1E+02 0.0023 33.0 9.5 27 373-399 77-109 (564)
223 smart00851 MGS MGS-like domain 46.6 65 0.0014 24.9 5.8 34 100-135 47-89 (90)
224 TIGR01470 cysG_Nterm siroheme 45.2 2.3E+02 0.0049 25.9 10.0 95 366-467 65-166 (205)
225 cd00984 DnaB_C DnaB helicase C 44.9 1E+02 0.0023 28.6 8.0 46 9-54 15-60 (242)
226 PRK02797 4-alpha-L-fucosyltran 44.8 3.2E+02 0.0069 26.9 11.8 72 363-443 219-292 (322)
227 PF02142 MGS: MGS-like domain 44.6 11 0.00025 29.6 1.1 83 24-135 2-94 (95)
228 PRK05647 purN phosphoribosylgl 44.6 1.1E+02 0.0024 27.9 7.7 107 8-139 2-110 (200)
229 COG3660 Predicted nucleoside-d 44.6 72 0.0016 30.4 6.4 38 360-398 234-271 (329)
230 PRK00346 surE 5'(3')-nucleotid 44.5 2.1E+02 0.0046 27.1 9.8 23 24-48 16-38 (250)
231 TIGR03029 EpsG chain length de 44.4 2.3E+02 0.0051 26.9 10.5 39 6-45 101-141 (274)
232 PRK14501 putative bifunctional 44.2 81 0.0018 35.1 8.1 112 357-487 345-463 (726)
233 PRK07525 sulfoacetaldehyde ace 44.0 1.2E+02 0.0025 32.9 9.1 27 373-399 69-101 (588)
234 TIGR02852 spore_dpaB dipicolin 43.9 31 0.00068 31.1 3.9 38 8-46 1-38 (187)
235 PF07355 GRDB: Glycine/sarcosi 42.9 51 0.0011 32.7 5.5 45 90-136 62-116 (349)
236 cd02070 corrinoid_protein_B12- 42.2 52 0.0011 30.0 5.2 40 6-46 81-120 (201)
237 COG1797 CobB Cobyrinic acid a, 42.1 22 0.00048 36.3 2.9 101 16-143 10-123 (451)
238 PLN02470 acetolactate synthase 41.6 1.8E+02 0.004 31.4 10.2 29 372-400 76-110 (585)
239 TIGR00708 cobA cob(I)alamin ad 41.0 2.6E+02 0.0057 24.9 9.7 98 9-121 7-108 (173)
240 PRK07313 phosphopantothenoylcy 40.8 39 0.00084 30.4 4.1 42 8-51 2-43 (182)
241 PRK14478 nitrogenase molybdenu 40.2 1.7E+02 0.0038 30.7 9.4 33 99-136 384-416 (475)
242 TIGR00639 PurN phosphoribosylg 40.0 2.8E+02 0.0061 25.0 9.7 105 8-138 1-108 (190)
243 PRK13931 stationary phase surv 40.0 3E+02 0.0065 26.3 10.1 98 24-139 16-129 (261)
244 PRK13789 phosphoribosylamine-- 39.3 1.2E+02 0.0026 31.3 8.0 35 6-46 3-37 (426)
245 PRK08322 acetolactate synthase 39.2 98 0.0021 33.1 7.6 27 373-399 64-96 (547)
246 TIGR00730 conserved hypothetic 39.0 2E+02 0.0043 25.7 8.3 38 363-400 88-134 (178)
247 COG2185 Sbm Methylmalonyl-CoA 38.8 50 0.0011 28.3 4.1 41 5-46 10-50 (143)
248 TIGR02370 pyl_corrinoid methyl 38.8 59 0.0013 29.6 5.0 45 5-50 82-126 (197)
249 PRK06732 phosphopantothenate-- 38.3 38 0.00081 31.7 3.7 37 8-45 1-49 (229)
250 PRK13934 stationary phase surv 38.1 1.4E+02 0.0031 28.5 7.6 25 22-48 14-38 (266)
251 PRK06849 hypothetical protein; 38.1 61 0.0013 32.9 5.6 38 4-46 1-38 (389)
252 TIGR00460 fmt methionyl-tRNA f 37.9 1E+02 0.0023 30.3 7.0 33 8-46 1-33 (313)
253 PRK01077 cobyrinic acid a,c-di 37.9 1.6E+02 0.0034 30.7 8.7 105 9-140 5-123 (451)
254 PRK14098 glycogen synthase; Pr 37.9 52 0.0011 34.7 5.1 36 8-46 6-49 (489)
255 cd02071 MM_CoA_mut_B12_BD meth 37.8 50 0.0011 27.3 4.1 38 9-47 1-38 (122)
256 TIGR01283 nifE nitrogenase mol 36.8 2.4E+02 0.0052 29.4 9.8 35 98-137 385-419 (456)
257 cd01452 VWA_26S_proteasome_sub 36.7 1.1E+02 0.0025 27.5 6.4 66 6-72 106-174 (187)
258 cd01968 Nitrogenase_NifE_I Nit 36.5 2.5E+02 0.0055 28.7 9.8 34 99-137 347-380 (410)
259 TIGR02699 archaeo_AfpA archaeo 35.4 49 0.0011 29.5 3.8 39 9-48 1-40 (174)
260 PRK12342 hypothetical protein; 35.4 54 0.0012 31.2 4.3 38 99-138 100-143 (254)
261 PRK10964 ADP-heptose:LPS hepto 35.4 1.5E+02 0.0033 29.0 7.8 135 280-444 179-321 (322)
262 cd00532 MGS-like MGS-like doma 35.3 1.2E+02 0.0025 24.7 5.8 84 20-136 10-104 (112)
263 PRK03359 putative electron tra 34.9 66 0.0014 30.7 4.8 38 99-138 103-146 (256)
264 PRK05920 aromatic acid decarbo 34.9 58 0.0013 29.9 4.2 41 7-49 3-43 (204)
265 TIGR03878 thermo_KaiC_2 KaiC d 34.7 1.4E+02 0.003 28.5 7.1 39 7-46 36-74 (259)
266 PRK06029 3-octaprenyl-4-hydrox 34.7 54 0.0012 29.6 4.0 40 8-49 2-42 (185)
267 PRK10422 lipopolysaccharide co 34.6 1.6E+02 0.0036 29.2 8.0 98 279-398 183-287 (352)
268 TIGR01918 various_sel_PB selen 33.6 86 0.0019 32.0 5.5 45 91-137 59-113 (431)
269 PF03641 Lysine_decarbox: Poss 33.6 1E+02 0.0022 26.0 5.4 37 364-400 46-92 (133)
270 COG1066 Sms Predicted ATP-depe 33.6 36 0.00078 34.6 2.9 101 10-138 96-217 (456)
271 TIGR01917 gly_red_sel_B glycin 33.5 86 0.0019 32.0 5.5 46 90-137 58-113 (431)
272 PRK13982 bifunctional SbtC-lik 33.4 52 0.0011 34.4 4.1 40 6-46 255-306 (475)
273 cd01840 SGNH_hydrolase_yrhL_li 32.7 1.1E+02 0.0023 26.2 5.5 38 278-316 50-87 (150)
274 cd07038 TPP_PYR_PDC_IPDC_like 32.6 71 0.0015 28.0 4.4 28 373-400 60-93 (162)
275 PRK09620 hypothetical protein; 32.3 65 0.0014 30.1 4.3 39 6-45 2-52 (229)
276 KOG0081 GTPase Rab27, small G 32.2 94 0.002 27.1 4.7 44 96-139 105-163 (219)
277 PRK04885 ppnK inorganic polyph 31.7 92 0.002 29.9 5.3 50 375-445 38-93 (265)
278 PF09314 DUF1972: Domain of un 31.5 3.9E+02 0.0084 24.1 11.7 41 24-72 23-63 (185)
279 COG0801 FolK 7,8-dihydro-6-hyd 31.3 97 0.0021 27.2 4.8 34 281-314 3-36 (160)
280 cd01121 Sms Sms (bacterial rad 31.3 3.3E+02 0.0071 27.6 9.4 39 9-48 84-122 (372)
281 PRK12446 undecaprenyldiphospho 31.2 1E+02 0.0023 30.8 5.9 26 371-398 92-120 (352)
282 PRK07206 hypothetical protein; 30.9 1.8E+02 0.004 29.6 7.8 33 8-46 3-35 (416)
283 TIGR00421 ubiX_pad polyprenyl 30.8 58 0.0013 29.2 3.5 38 9-48 1-38 (181)
284 TIGR02655 circ_KaiC circadian 30.8 3.1E+02 0.0067 28.8 9.5 45 7-52 263-307 (484)
285 TIGR02302 aProt_lowcomp conser 30.5 1.2E+02 0.0025 34.3 6.4 61 430-492 474-540 (851)
286 PF02702 KdpD: Osmosensitive K 30.3 88 0.0019 28.6 4.5 42 5-47 3-44 (211)
287 PF02571 CbiJ: Precorrin-6x re 30.3 1.3E+02 0.0028 28.6 5.9 41 96-138 182-226 (249)
288 cd01122 GP4d_helicase GP4d_hel 30.0 49 0.0011 31.6 3.1 43 9-51 32-74 (271)
289 PF00318 Ribosomal_S2: Ribosom 29.2 1.6E+02 0.0035 27.0 6.3 115 21-142 42-177 (211)
290 cd02069 methionine_synthase_B1 29.1 1E+02 0.0022 28.5 4.9 42 6-48 87-128 (213)
291 PRK02155 ppnK NAD(+)/NADH kina 28.9 1.2E+02 0.0027 29.4 5.7 53 370-445 63-119 (291)
292 PRK06067 flagellar accessory p 28.7 83 0.0018 29.2 4.4 43 6-49 24-66 (234)
293 PRK05299 rpsB 30S ribosomal pr 28.6 91 0.002 29.8 4.6 34 109-142 156-191 (258)
294 COG1090 Predicted nucleoside-d 28.5 4.5E+02 0.0098 25.5 9.0 20 26-46 13-32 (297)
295 PF10087 DUF2325: Uncharacteri 28.3 1.2E+02 0.0026 23.8 4.7 33 110-142 48-86 (97)
296 PLN02939 transferase, transfer 28.2 1E+02 0.0022 35.2 5.5 42 4-46 478-525 (977)
297 PF08323 Glyco_transf_5: Starc 28.0 50 0.0011 31.2 2.7 22 24-46 22-43 (245)
298 PRK14077 pnk inorganic polypho 28.0 1.2E+02 0.0025 29.5 5.3 53 370-445 64-120 (287)
299 COG4081 Uncharacterized protei 27.9 93 0.002 26.0 3.8 36 10-46 6-42 (148)
300 TIGR03880 KaiC_arch_3 KaiC dom 27.4 1.2E+02 0.0027 27.8 5.3 43 8-51 17-59 (224)
301 PRK02231 ppnK inorganic polyph 27.3 1.4E+02 0.003 28.8 5.7 60 363-445 35-98 (272)
302 PRK11519 tyrosine kinase; Prov 27.1 4.9E+02 0.011 29.0 10.7 39 7-46 525-565 (719)
303 COG1435 Tdk Thymidine kinase [ 27.0 4.9E+02 0.011 23.8 8.6 38 10-48 7-44 (201)
304 PRK01911 ppnK inorganic polyph 27.0 1.4E+02 0.0031 29.0 5.8 53 370-445 64-120 (292)
305 COG2205 KdpD Osmosensitive K+ 26.9 1E+02 0.0022 34.3 5.0 43 5-48 20-62 (890)
306 cd07039 TPP_PYR_POX Pyrimidine 26.9 1.8E+02 0.0039 25.5 5.9 27 374-400 65-97 (164)
307 PRK07524 hypothetical protein; 26.8 93 0.002 33.2 4.9 25 375-399 67-97 (535)
308 PF09001 DUF1890: Domain of un 26.2 73 0.0016 27.0 3.0 27 19-46 11-37 (139)
309 PRK06249 2-dehydropantoate 2-r 26.1 87 0.0019 30.7 4.2 36 5-46 3-38 (313)
310 TIGR03877 thermo_KaiC_1 KaiC d 25.9 4.2E+02 0.0091 24.6 8.7 44 6-50 20-63 (237)
311 COG2109 BtuR ATP:corrinoid ade 25.9 5E+02 0.011 23.6 10.3 102 10-121 31-133 (198)
312 PF02572 CobA_CobO_BtuR: ATP:c 25.9 3.2E+02 0.007 24.3 7.3 102 9-121 5-107 (172)
313 cd01141 TroA_d Periplasmic bin 25.8 98 0.0021 27.4 4.2 38 98-138 60-99 (186)
314 PF06506 PrpR_N: Propionate ca 25.7 1.3E+02 0.0028 26.7 4.8 44 97-143 111-155 (176)
315 PF05728 UPF0227: Uncharacteri 25.5 1.5E+02 0.0032 26.8 5.2 45 97-141 46-91 (187)
316 PRK08266 hypothetical protein; 25.4 1.1E+02 0.0023 32.8 5.0 26 374-399 70-101 (542)
317 PRK04539 ppnK inorganic polyph 25.4 1.9E+02 0.004 28.3 6.2 53 370-445 68-124 (296)
318 PRK13604 luxD acyl transferase 25.4 1.5E+02 0.0032 29.1 5.5 37 6-43 35-71 (307)
319 PRK03378 ppnK inorganic polyph 25.2 1.4E+02 0.0031 29.0 5.4 53 370-445 63-119 (292)
320 KOG1344 Predicted histone deac 25.2 2.1E+02 0.0044 26.7 5.9 50 91-142 231-302 (324)
321 PRK09841 cryptic autophosphory 25.1 5.5E+02 0.012 28.7 10.6 39 7-46 530-570 (726)
322 PRK07064 hypothetical protein; 24.6 94 0.002 33.2 4.5 27 373-399 67-99 (544)
323 TIGR02113 coaC_strep phosphopa 24.6 1E+02 0.0022 27.5 3.9 40 8-49 1-40 (177)
324 PRK03372 ppnK inorganic polyph 24.6 1.6E+02 0.0035 28.8 5.7 53 370-445 72-128 (306)
325 CHL00076 chlB photochlorophyll 24.5 1.1E+02 0.0024 32.5 4.8 36 98-138 364-399 (513)
326 COG2910 Putative NADH-flavin r 24.3 70 0.0015 28.8 2.7 34 8-46 1-34 (211)
327 COG2327 WcaK Polysaccharide py 24.3 2.6E+02 0.0057 28.3 7.1 71 365-446 280-351 (385)
328 COG0143 MetG Methionyl-tRNA sy 24.0 1.4E+02 0.0031 32.0 5.4 29 17-46 21-52 (558)
329 COG1484 DnaC DNA replication p 23.8 1E+02 0.0023 29.2 4.1 39 7-46 105-143 (254)
330 PRK13768 GTPase; Provisional 23.7 4E+02 0.0087 25.1 8.1 38 8-46 3-40 (253)
331 PRK00005 fmt methionyl-tRNA fo 23.7 3E+02 0.0065 27.0 7.5 33 8-46 1-33 (309)
332 PRK02910 light-independent pro 23.7 1.2E+02 0.0025 32.3 4.9 35 99-138 353-387 (519)
333 PF13779 DUF4175: Domain of un 23.6 1.8E+02 0.0039 32.9 6.3 61 430-492 443-509 (820)
334 PRK05579 bifunctional phosphop 23.6 1.2E+02 0.0025 31.1 4.6 46 4-51 3-48 (399)
335 TIGR00379 cobB cobyrinic acid 23.5 3.8E+02 0.0081 27.9 8.5 105 10-141 2-120 (449)
336 cd02065 B12-binding_like B12 b 23.5 1.2E+02 0.0026 24.7 4.0 37 9-46 1-37 (125)
337 TIGR01278 DPOR_BchB light-inde 23.4 1.2E+02 0.0025 32.3 4.8 35 99-138 355-389 (511)
338 cd01976 Nitrogenase_MoFe_alpha 23.3 92 0.002 32.1 3.9 35 99-138 360-394 (421)
339 PF10657 RC-P840_PscD: Photosy 23.3 1.2E+02 0.0026 24.9 3.6 44 4-48 43-86 (144)
340 TIGR02853 spore_dpaA dipicolin 23.3 2E+02 0.0044 27.8 6.1 23 23-46 12-34 (287)
341 PF06506 PrpR_N: Propionate ca 23.2 1.4E+02 0.0031 26.4 4.7 33 369-402 31-63 (176)
342 PF01210 NAD_Gly3P_dh_N: NAD-d 23.2 60 0.0013 28.2 2.2 32 9-46 1-32 (157)
343 PRK11823 DNA repair protein Ra 23.2 5E+02 0.011 27.0 9.3 40 9-49 82-121 (446)
344 TIGR00521 coaBC_dfp phosphopan 23.2 1E+02 0.0022 31.5 4.0 43 6-50 2-44 (390)
345 PRK10637 cysG siroheme synthas 23.1 3.8E+02 0.0082 28.0 8.5 35 432-468 136-170 (457)
346 cd07035 TPP_PYR_POX_like Pyrim 23.1 1.8E+02 0.0039 24.8 5.2 27 374-400 61-93 (155)
347 PRK00784 cobyric acid synthase 23.1 8.9E+02 0.019 25.4 11.3 35 9-44 4-39 (488)
348 TIGR00750 lao LAO/AO transport 23.1 6.2E+02 0.013 24.6 9.5 42 6-48 33-74 (300)
349 TIGR01286 nifK nitrogenase mol 23.0 6.3E+02 0.014 26.9 10.1 35 99-138 428-462 (515)
350 PLN02929 NADH kinase 22.9 1.5E+02 0.0033 28.9 5.1 62 375-445 67-137 (301)
351 PRK05858 hypothetical protein; 22.8 1.3E+02 0.0028 32.2 5.0 25 375-399 70-100 (542)
352 PF14626 RNase_Zc3h12a_2: Zc3h 22.8 90 0.002 25.7 2.8 31 21-52 9-39 (122)
353 cd01981 Pchlide_reductase_B Pc 22.3 1.4E+02 0.0029 30.9 5.0 36 98-138 360-395 (430)
354 COG2159 Predicted metal-depend 22.3 4.5E+02 0.0098 25.5 8.3 70 241-318 98-167 (293)
355 PRK10916 ADP-heptose:LPS hepto 22.1 4.1E+02 0.0089 26.3 8.3 97 278-398 179-286 (348)
356 PRK02122 glucosamine-6-phospha 22.0 3.1E+02 0.0067 30.2 7.7 38 6-45 368-406 (652)
357 cd02034 CooC The accessory pro 21.9 1.9E+02 0.0042 23.6 4.9 37 9-46 1-37 (116)
358 COG0223 Fmt Methionyl-tRNA for 21.7 2E+02 0.0043 28.2 5.6 37 7-49 1-37 (307)
359 PRK03708 ppnK inorganic polyph 21.5 1.5E+02 0.0032 28.7 4.6 50 375-445 60-112 (277)
360 PRK01231 ppnK inorganic polyph 21.5 2.1E+02 0.0046 27.9 5.8 50 375-445 65-118 (295)
361 COG0320 LipA Lipoate synthase 21.3 83 0.0018 30.1 2.7 26 471-496 224-249 (306)
362 TIGR02195 heptsyl_trn_II lipop 21.1 7.5E+02 0.016 24.1 9.9 96 278-398 173-276 (334)
363 COG4088 Predicted nucleotide k 21.0 1.2E+02 0.0026 28.0 3.6 37 8-45 2-38 (261)
364 PF00282 Pyridoxal_deC: Pyrido 20.9 2E+02 0.0044 29.1 5.7 70 374-445 105-191 (373)
365 KOG3339 Predicted glycosyltran 20.9 4.8E+02 0.011 23.5 7.1 24 11-34 41-64 (211)
366 cd07037 TPP_PYR_MenD Pyrimidin 20.8 82 0.0018 27.7 2.5 26 375-400 63-94 (162)
367 PRK02649 ppnK inorganic polyph 20.7 1.8E+02 0.004 28.5 5.2 50 375-445 71-124 (305)
368 cd06559 Endonuclease_V Endonuc 20.6 1.1E+02 0.0024 28.2 3.3 42 97-138 80-128 (208)
369 COG0503 Apt Adenine/guanine ph 20.5 2.4E+02 0.0052 25.2 5.5 28 110-137 53-82 (179)
370 PF02374 ArsA_ATPase: Anion-tr 20.5 1.3E+02 0.0028 29.5 4.1 40 8-48 1-41 (305)
371 PF01497 Peripla_BP_2: Peripla 20.5 1.5E+02 0.0032 27.2 4.5 36 104-141 56-93 (238)
372 COG2099 CobK Precorrin-6x redu 20.4 1.5E+02 0.0033 28.1 4.2 40 97-138 185-229 (257)
373 PF10933 DUF2827: Protein of u 20.3 7.7E+02 0.017 24.8 9.2 106 352-483 251-362 (364)
374 COG0678 AHP1 Peroxiredoxin [Po 20.0 1.7E+02 0.0037 25.4 4.0 39 6-45 36-81 (165)
375 cd03466 Nitrogenase_NifN_2 Nit 20.0 1.5E+02 0.0033 30.6 4.7 35 98-137 362-396 (429)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.8e-70 Score=557.43 Aligned_cols=473 Identities=51% Similarity=0.914 Sum_probs=367.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCC-CCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVN-PDA 83 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~ 83 (498)
.+.||+++|+|++||++|+++||+.|. .+ |+.|||++++.+..++.+.... . .+++++.+|.+..+++ + .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~~~~~~~-~---~~i~~~~lp~p~~~gl-p~~~~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASAQSKFLN-S---TGVDIVGLPSPDISGL-VDPSA 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhhhhcccc-C---CCceEEECCCccccCC-CCCCc
Confidence 467999999999999999999999998 67 9999999999876543232221 1 2689999997766665 4 333
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhccccccc
Q 041419 84 SLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEH 163 (498)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 163 (498)
+....+......+.+.+++++++...+|+|||+|.+..|+.++|+++|||++.|++++++.++.+.+.|.+.... ..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~-~~~~ 156 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI-KEEH 156 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc-cccc
Confidence 333344445556677888888876457899999999999999999999999999999999888877766533222 1111
Q ss_pred CCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEE
Q 041419 164 FNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVY 242 (498)
Q Consensus 164 ~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~ 242 (498)
.....+..+||+++++..+++..+... ...+..+ .+......+++++++|||++||+..++++++...+++...++++
T Consensus 157 ~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~ 235 (481)
T PLN02992 157 TVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDF-VRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVY 235 (481)
T ss_pred ccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHH-HHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceE
Confidence 111124568999989888888755555 4334444 56666778899999999999999999887652122221135699
Q ss_pred EeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Q 041419 243 AIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVEND 322 (498)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (498)
.|||+..... . ...+.+|.+||+++++++||||||||+..++.+++++++.+|+.++++|||+++.+....
T Consensus 236 ~VGPl~~~~~--------~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~ 306 (481)
T PLN02992 236 PIGPLCRPIQ--------S-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGS 306 (481)
T ss_pred EecCccCCcC--------C-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 9999975322 1 123567999999998899999999999999999999999999999999999997542111
Q ss_pred CCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc
Q 041419 323 VSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA 402 (498)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~ 402 (498)
.++.++......+.....+.+|++|.+|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~ 386 (481)
T PLN02992 307 ACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFA 386 (481)
T ss_pred cccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccc
Confidence 11111110000000001235899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhc--cCCchHHHHHHH
Q 041419 403 EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATS--NSGSSYKSLSQV 480 (498)
Q Consensus 403 DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~--~~g~~~~~~~~~ 480 (498)
||+.||+++++++|+|+.++. .++.++.++|+++|+++|.++++ +++|+||+++++.+++|++ +||||.+++++|
T Consensus 387 DQ~~na~~~~~~~g~gv~~~~--~~~~~~~~~l~~av~~vm~~~~g-~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~ 463 (481)
T PLN02992 387 EQNMNAALLSDELGIAVRSDD--PKEVISRSKIEALVRKVMVEEEG-EEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRV 463 (481)
T ss_pred hhHHHHHHHHHHhCeeEEecC--CCCcccHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999669999999862 11358999999999999998777 8999999999999999995 599999999999
Q ss_pred HHHHHhhccceeccCCCC
Q 041419 481 AKQCEKSLQELVTLGQGA 498 (498)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~ 498 (498)
++++..-+...-.|..||
T Consensus 464 v~~~~~~~~~~~~~~~~~ 481 (481)
T PLN02992 464 TKECQRFLERVRCLARGA 481 (481)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999988776655555554
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-67 Score=536.99 Aligned_cols=460 Identities=46% Similarity=0.839 Sum_probs=356.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccc-cccccCCCCCCCeEEEecCCCCCCCCCCCCCc
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASN-SNVHAVPNNNNLFNAVTLPLANISSLVNPDAS 84 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (498)
.+.||+++|+|++||++|+++||+.|+.++|..|||++++.+..+.. +..+.......+++++++|.+..+++-+.+.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 46799999999999999999999999965489999999887654321 11122111112599999997665443122223
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCc-EEEEecchHHHHHHHhhhhhhhhccccccc
Q 041419 85 LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLL-KYMFIASNAWFLACFIHAPAIDKKLLTDEH 163 (498)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 163 (498)
....+...+..+.+.+++++++...+|+|||+|.+..|+.++|+++||| .+.|++++++..+.++++|...... ..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~-~~~~ 160 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV-EGEY 160 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc-cccc
Confidence 4445566667788889999988655789999999999999999999999 5888888888887887777644322 2211
Q ss_pred CCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEE
Q 041419 164 FNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVY 242 (498)
Q Consensus 164 ~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~ 242 (498)
....+++.+||+++++..+++..+.+. ...+..+ .+..+...+++++++|||++||+..+..+++...++|...++++
T Consensus 161 ~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~ 239 (470)
T PLN03015 161 VDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKEC-VRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVY 239 (470)
T ss_pred CCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHH-HHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceE
Confidence 111234568999999999999766555 3334444 45556688899999999999999999888763112221135699
Q ss_pred EeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Q 041419 243 AIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVEND 322 (498)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (498)
.|||+..... . ...+.+|.+||+++++++||||||||+..++.+++.+++.+|+.++++|+|+++.+....
T Consensus 240 ~VGPl~~~~~--------~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~ 310 (470)
T PLN03015 240 PIGPIVRTNV--------H-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL 310 (470)
T ss_pred EecCCCCCcc--------c-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc
Confidence 9999984321 1 122458999999999999999999999999999999999999999999999997532100
Q ss_pred CCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc
Q 041419 323 VSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA 402 (498)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~ 402 (498)
+.+ +. ..+...+.+|++|.+|++++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 311 --~~~----~~-~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~ 383 (470)
T PLN03015 311 --GAS----SS-DDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYA 383 (470)
T ss_pred --ccc----cc-cccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEeccccc
Confidence 000 00 00001236899999999999999889999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 041419 403 EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD--KEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQV 480 (498)
Q Consensus 403 DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~--~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~ 480 (498)
||+.||+++++.+|+|+++......+.+++++|+++|+++|.+ +++ +++|+||++|++.+++|+++||||++++++|
T Consensus 384 DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg-~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~ 462 (470)
T PLN03015 384 EQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEG-QKIRAKAEEVRVSSERAWSHGGSSYNSLFEW 462 (470)
T ss_pred chHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9999999997899999998411112468999999999999963 567 8999999999999999999999999999999
Q ss_pred HHHH
Q 041419 481 AKQC 484 (498)
Q Consensus 481 ~~~~ 484 (498)
++++
T Consensus 463 ~~~~ 466 (470)
T PLN03015 463 AKRC 466 (470)
T ss_pred HHhc
Confidence 9987
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-67 Score=540.03 Aligned_cols=464 Identities=23% Similarity=0.379 Sum_probs=355.6
Q ss_pred CCCCCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccc--ccccC--CCC-CCCeEEEecCCCCC
Q 041419 1 MQSTKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNS--NVHAV--PNN-NNLFNAVTLPLANI 75 (498)
Q Consensus 1 ~~~~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~--~~~~~--~~~-~~~i~~~~~~~~~~ 75 (498)
|+|...+.||+++|+|++||++|+++||+.|+.+ |..|||++++.+..++.+ ..... .+. ...++|..++.
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd--- 76 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED--- 76 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC---
Confidence 8999999999999999999999999999999999 999999999986655432 11110 010 11356655552
Q ss_pred CCCCCCC----CchHHHHHHHHHHhhHHHHHHHHhc---CCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHH
Q 041419 76 SSLVNPD----ASLGEKILVLMHKSLPALRSAISAM---KFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACF 148 (498)
Q Consensus 76 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~---~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~ 148 (498)
++ +++ .++...+..+...+.+.+.++++++ .++++|||+|.+..|+.++|+++|||+++|++++++.++.+
T Consensus 77 -gl-p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~ 154 (480)
T PLN02555 77 -GW-AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAY 154 (480)
T ss_pred -CC-CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHH
Confidence 22 322 1233333334345666778888765 22349999999999999999999999999999999999888
Q ss_pred hhhhhhhhcccccccCCCCCcccCCCCCCCCcccccccccCC--CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHh
Q 041419 149 IHAPAIDKKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP--NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGS 226 (498)
Q Consensus 149 ~~~p~~~~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~ 226 (498)
++.+...... +. ......++.+||+|+++..+++.++... ...+...+.+..+...+++++++|||++||+..+..
T Consensus 155 ~~~~~~~~~~-~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 232 (480)
T PLN02555 155 YHYYHGLVPF-PT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDY 232 (480)
T ss_pred HHHhhcCCCc-cc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 7754211011 11 0001123568999999999999866432 222223335566677889999999999999999888
Q ss_pred hhhccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHh
Q 041419 227 LRDDNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLEL 306 (498)
Q Consensus 227 ~~~~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~ 306 (498)
+... .| ++.|||+...............+..+++|.+||+++++++||||||||+..++.+++.+++.+|+.
T Consensus 233 l~~~-------~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~ 304 (480)
T PLN02555 233 MSKL-------CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLN 304 (480)
T ss_pred HhhC-------CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHh
Confidence 7653 34 999999975321000000011123457899999999888999999999999999999999999999
Q ss_pred cCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHH
Q 041419 307 SQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTV 386 (498)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~ 386 (498)
.+++|||+++..... ++.....+|++|.++.+++ +.+.+|+||.+||.|+++++|||||||||++
T Consensus 305 ~~~~flW~~~~~~~~--------------~~~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 369 (480)
T PLN02555 305 SGVSFLWVMRPPHKD--------------SGVEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTM 369 (480)
T ss_pred cCCeEEEEEecCccc--------------ccchhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHH
Confidence 999999999743110 0001245888999888764 5666999999999999999999999999999
Q ss_pred HHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC-CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 041419 387 ESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP-TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQK 465 (498)
Q Consensus 387 eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~-~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~ 465 (498)
||+++|||||++|+++||+.||+++++.+|+|+++...+ ..+.++.++|+++|+++|.++++ +++|+||++|++++++
T Consensus 370 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g-~~~r~ra~~l~~~a~~ 448 (480)
T PLN02555 370 EALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKA-AELKQNALKWKEEAEA 448 (480)
T ss_pred HHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999977789999984211 01468999999999999988888 8999999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHhhccceeccCC
Q 041419 466 ATSNSGSSYKSLSQVAKQCEKSLQELVTLGQ 496 (498)
Q Consensus 466 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
|+++||+|+.++++|++++....+|.|.-|.
T Consensus 449 A~~egGSS~~~l~~~v~~i~~~~~~~~~~~~ 479 (480)
T PLN02555 449 AVAEGGSSDRNFQEFVDKLVRKSVEIVDNGS 479 (480)
T ss_pred HhcCCCcHHHHHHHHHHHHHhccceecccCC
Confidence 9999999999999999999999999987663
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.7e-67 Score=535.74 Aligned_cols=440 Identities=29% Similarity=0.433 Sum_probs=342.6
Q ss_pred CCCCCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCC
Q 041419 1 MQSTKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVN 80 (498)
Q Consensus 1 ~~~~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (498)
|+....++||+++|+|++||++||++||+.|+.+ |+.|||++++.+... . .... .++++..+|. ++ +
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~---~-~~~~---~~i~~~~ip~----gl-p 67 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS---P-SDDF---TDFQFVTIPE----SL-P 67 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc---c-ccCC---CCeEEEeCCC----CC-C
Confidence 8888899999999999999999999999999999 999999999976421 1 1111 2688988874 22 3
Q ss_pred CC----CchHHHHHHHHHHhhHHHHHHHHhc----CCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhh
Q 041419 81 PD----ASLGEKILVLMHKSLPALRSAISAM----KFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAP 152 (498)
Q Consensus 81 ~~----~~~~~~~~~~~~~~~~~l~~~l~~~----~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 152 (498)
++ ......+..+...+.+.+.++++++ ..+++|||+|.+..|+.++|+++|||++.|++++++.++++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 68 ESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred cccccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 21 1122333334445566677777664 235799999999999999999999999999999999988877655
Q ss_pred hhhhcccccccCC--CCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhc
Q 041419 153 AIDKKLLTDEHFN--LEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDD 230 (498)
Q Consensus 153 ~~~~~~~~~~~~~--~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~ 230 (498)
.+........... ......+||+++++..+++.........+..++... ....+++++++|||++||+..+.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 226 (451)
T PLN02410 148 KLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQ 226 (451)
T ss_pred HHHhccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhc
Confidence 4432110001111 112345899988888888765433322222232222 2456788999999999999999888763
Q ss_pred cccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCc
Q 041419 231 NLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQR 310 (498)
Q Consensus 231 ~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~ 310 (498)
+ .++++.|||++..... . ....+.+.+|.+||+++++++||||||||+..++.+++.+++.+|+.++++
T Consensus 227 --~----~~~v~~vGpl~~~~~~---~--~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~ 295 (451)
T PLN02410 227 --L----QIPVYPIGPLHLVASA---P--TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQ 295 (451)
T ss_pred --c----CCCEEEecccccccCC---C--ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCC
Confidence 1 2579999999754220 0 011123457899999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHh
Q 041419 311 FIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIV 390 (498)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~ 390 (498)
|+|+++.+... +......+|++|.+|.++++ ++.+|+||.+||+|+++++|||||||||++||++
T Consensus 296 FlWv~r~~~~~--------------~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~ 360 (451)
T PLN02410 296 FLWVIRPGSVR--------------GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIG 360 (451)
T ss_pred eEEEEccCccc--------------ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHH
Confidence 99999743210 10012348999999998765 4459999999999999999999999999999999
Q ss_pred hCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccC
Q 041419 391 NGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNS 470 (498)
Q Consensus 391 ~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~ 470 (498)
+|||||++|+++||+.||+++++.+|+|+.+. +.+++++|+++|+++|.++++ ++||+||+++++++++|+++|
T Consensus 361 ~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-----~~~~~~~v~~av~~lm~~~~~-~~~r~~a~~l~~~~~~a~~~g 434 (451)
T PLN02410 361 EGVPMICKPFSSDQKVNARYLECVWKIGIQVE-----GDLDRGAVERAVKRLMVEEEG-EEMRKRAISLKEQLRASVISG 434 (451)
T ss_pred cCCCEEeccccccCHHHHHHHHHHhCeeEEeC-----CcccHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976779999985 578999999999999998777 899999999999999999999
Q ss_pred CchHHHHHHHHHHHHh
Q 041419 471 GSSYKSLSQVAKQCEK 486 (498)
Q Consensus 471 g~~~~~~~~~~~~~~~ 486 (498)
|+|+.++++|++++..
T Consensus 435 GsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 435 GSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998864
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.1e-67 Score=538.32 Aligned_cols=456 Identities=29% Similarity=0.442 Sum_probs=350.7
Q ss_pred CCCC--CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCC
Q 041419 1 MQST--KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSL 78 (498)
Q Consensus 1 ~~~~--~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (498)
|.+. .+++||+++|+|++||++||++||+.|+.+ |+.|||++|+.+..++... .... .+++++.++.+..+++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~~~~-~~~~---~~i~~~~lp~P~~~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFLNPL-LSKH---PSIETLVLPFPSHPSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHhhh-cccC---CCeeEEeCCCCCcCCC
Confidence 5553 678999999999999999999999999999 9999999999887654332 1222 2688888887655554
Q ss_pred CCCCCch--------HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhh
Q 041419 79 VNPDASL--------GEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIH 150 (498)
Q Consensus 79 ~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~ 150 (498)
+++.+. ...+...+....+.+.+++++...+|+|||+|.+..|+.++|+++|||++.|++++++.++.+++
T Consensus 76 -PdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 -PSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred -CCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 544321 11233444455666777777644468999999999999999999999999999999999988877
Q ss_pred hhhhhhcccccccCCCCC---cccCCCCCCCCcccccccccCC--CchhHHHHHHHhhcccCCcEEEEcCccccChHHHH
Q 041419 151 APAIDKKLLTDEHFNLEK---PMELPGCMPVRFQDSLELFLHP--NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLG 225 (498)
Q Consensus 151 ~p~~~~~~~~~~~~~~~~---~~~~pg~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~ 225 (498)
++...... ........ ...+||+++++..+++.++... ...+..++.+.......++++++|||++||+..+.
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 232 (477)
T PLN02863 155 LWREMPTK--INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLE 232 (477)
T ss_pred Hhhccccc--ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHH
Confidence 54211000 00001111 1247899889999988766432 22233333445555667789999999999999998
Q ss_pred hhhhccccCCCCCCCEEEeccCCCCCCCC--CCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHH
Q 041419 226 SLRDDNLLGRVCKAPVYAIGPLVRSPDVA--SPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWS 303 (498)
Q Consensus 226 ~~~~~~~~~r~~~p~v~~vGpl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a 303 (498)
.++.. ++ .++++.|||+....... ...+.......+++|.+||+++++++||||||||+...+.+++.+++.+
T Consensus 233 ~~~~~--~~---~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~g 307 (477)
T PLN02863 233 HLKKE--LG---HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASG 307 (477)
T ss_pred HHHhh--cC---CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHH
Confidence 88763 11 25799999997532100 0000001111356899999999889999999999999999999999999
Q ss_pred HHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcc
Q 041419 304 LELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWN 383 (498)
Q Consensus 304 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~g 383 (498)
|+.++.+|||+++.+... ......+|++|.++.+++|+++.+|+||.+||+|+++++||||||||
T Consensus 308 L~~~~~~flw~~~~~~~~---------------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~n 372 (477)
T PLN02863 308 LEKSGVHFIWCVKEPVNE---------------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWN 372 (477)
T ss_pred HHhCCCcEEEEECCCccc---------------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCch
Confidence 999999999999754220 00124689999999988899999999999999999999999999999
Q ss_pred hHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 041419 384 STVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGA 463 (498)
Q Consensus 384 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~ 463 (498)
|++||+++|||||++|+++||+.||+++++++|+|+++.+. .....+.+++.++|+++|.+ + ++||+||+++++.+
T Consensus 373 S~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~-~~~~~~~~~v~~~v~~~m~~--~-~~~r~~a~~l~e~a 448 (477)
T PLN02863 373 SVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEG-ADTVPDSDELARVFMESVSE--N-QVERERAKELRRAA 448 (477)
T ss_pred HHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccC-CCCCcCHHHHHHHHHHHhhc--c-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999987789999998521 11346899999999999942 2 88999999999999
Q ss_pred HHhhccCCchHHHHHHHHHHHHhhc
Q 041419 464 QKATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 464 ~~a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
++|+++||+|+.++++|++++....
T Consensus 449 ~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 449 LDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHhccCCcHHHHHHHHHHHHHHhc
Confidence 9999999999999999999997654
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-66 Score=537.33 Aligned_cols=460 Identities=35% Similarity=0.572 Sum_probs=354.1
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCC----CEEEEEEcCCCCc----ccccccccC-CCCCCCeEEEecCCCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHD----VQVTVFVVASHDD----ASNSNVHAV-PNNNNLFNAVTLPLANI 75 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~G----h~Vt~~~~~~~~~----~~~~~~~~~-~~~~~~i~~~~~~~~~~ 75 (498)
|.|.||+|+|+|++||++|+++||+.|+.+ | +.|||++++.+.+ ++... +.. .....+++|+++|...
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~lp~~~- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAH-VRREAASGLDIRFHHLPAVE- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHH-HhhcccCCCCEEEEECCCCC-
Confidence 467899999999999999999999999998 6 7999999987543 22111 110 1111259999998643
Q ss_pred CCCCCCCC-chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhh
Q 041419 76 SSLVNPDA-SLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAI 154 (498)
Q Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 154 (498)
+ +++. +....+..++..+.+.+++++++...+++|||+|.+..|+.++|+++|||++.|++++++.++.+++.|..
T Consensus 78 --~-p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 --P-PTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred --C-CCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 2 3232 23333444556677778888877633569999999999999999999999999999999999998887654
Q ss_pred hhcccccccCCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccc-
Q 041419 155 DKKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNL- 232 (498)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~- 232 (498)
.... ...+....++..+||+++++..+++..+... +..+..+ ....+...+++++++|||++||+..+..+.....
T Consensus 155 ~~~~-~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 155 DEEV-AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWF-VYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred cccc-cCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHH-HHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 3322 2111111134468999999999999766555 3333333 4455667889999999999999999888876421
Q ss_pred cCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEE
Q 041419 233 LGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFI 312 (498)
Q Consensus 233 ~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (498)
.+.+ .|+++.|||+...... ......+.+|.+||+++++++||||||||+..++.+++.+++.+|+.++.+|+
T Consensus 233 ~~~~-~~~v~~vGPl~~~~~~------~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 233 PGRP-APTVYPIGPVISLAFT------PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred ccCC-CCceEEeCCCcccccc------CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 1111 3579999999843210 01123467899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhC
Q 041419 313 WVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNG 392 (498)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~G 392 (498)
|+++.+.... .... + .......+|++|.++.+++++++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 306 Wv~~~~~~~~----~~~~-~---~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 306 WVLRGPPAAG----SRHP-T---DADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred EEEcCCcccc----cccc-c---ccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 9997542100 0000 0 000123489999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccccccchhhHHHHhhhhcceEEeeccCC-CCCcCHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHhhcc
Q 041419 393 VPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT-ESLVTRQEIEMLVRKIMVDKE--GHSSIRVRAMELKYGAQKATSN 469 (498)
Q Consensus 393 vP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~-~~~~~~~~l~~al~~vl~~~~--~~~~~~~~a~~l~~~~~~a~~~ 469 (498)
||||++|+++||+.||+++++++|+|+.+...++ .+.+++++|+++|+++|.|++ + +++|+||+++++++++|+++
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~-~~~r~~a~~~~~~~~~a~~~ 456 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEG-RKAREKAAEMKAACRKAVEE 456 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988667999999852111 124799999999999998754 5 89999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhc
Q 041419 470 SGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 470 ~g~~~~~~~~~~~~~~~~~ 488 (498)
||||+.++++|++++..+-
T Consensus 457 gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 457 GGSSYAALQRLAREIRHGA 475 (480)
T ss_pred CCcHHHHHHHHHHHHHhcc
Confidence 9999999999999997653
No 7
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.2e-66 Score=523.50 Aligned_cols=426 Identities=26% Similarity=0.423 Sum_probs=334.8
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCC-----
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNP----- 81 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----- 81 (498)
+.||+|+|+|++||++||++||+.|+.+ |+.|||++++.+.+++... . ..+++|+.++. ++ ++
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~~~~----~--~~~i~~~~ipd----gl-p~~~~~~ 72 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTIHLD----P--SSPISIATISD----GY-DQGGFSS 72 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhcccC----C--CCCEEEEEcCC----CC-CCccccc
Confidence 4699999999999999999999999999 9999999999865543221 1 12699999874 22 32
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHhc--CCCC-cEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcc
Q 041419 82 DASLGEKILVLMHKSLPALRSAISAM--KFRP-TALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKL 158 (498)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~p-D~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 158 (498)
..+....+..+.....+.+++++++. ..+| +|||+|.+..|+.++|+++|||++.|++++++....+++ +...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~--- 148 (449)
T PLN02173 73 AGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN--- 148 (449)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc---
Confidence 12233333344446677888888764 1245 999999999999999999999999999998887755543 2211
Q ss_pred cccccCCCCCcccCCCCCCCCcccccccccCC--CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCC
Q 041419 159 LTDEHFNLEKPMELPGCMPVRFQDSLELFLHP--NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRV 236 (498)
Q Consensus 159 ~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~ 236 (498)
. . .....+||+|+++..+++.++... ...+...+.+......+++++++|||++||++.+..+..
T Consensus 149 --~---~-~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~------- 215 (449)
T PLN02173 149 --N---G-SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK------- 215 (449)
T ss_pred --c---C-CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-------
Confidence 0 0 112358899989999998876543 222333335556677889999999999999998888753
Q ss_pred CCCCEEEeccCCCCC---CCCCCCCCC--CCC--cchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCC
Q 041419 237 CKAPVYAIGPLVRSP---DVASPSTKT--SPS--DSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQ 309 (498)
Q Consensus 237 ~~p~v~~vGpl~~~~---~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (498)
.++++.|||+.+.. ......+.. ..+ ..+++|.+||+++++++||||||||+...+.+++.+++.+| .+.
T Consensus 216 -~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 216 -VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred -cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 24699999997421 000000000 001 22456999999999999999999999999999999999999 778
Q ss_pred cEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHH
Q 041419 310 RFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESI 389 (498)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal 389 (498)
+|+|+++.+. ...+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 293 ~flWvvr~~~--------------------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai 352 (449)
T PLN02173 293 SYLWVVRASE--------------------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGL 352 (449)
T ss_pred CEEEEEeccc--------------------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHH
Confidence 8999996431 24578899988876688888999999999999999999999999999999
Q ss_pred hhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhcc
Q 041419 390 VNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSN 469 (498)
Q Consensus 390 ~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~ 469 (498)
++|||||++|+++||+.||+++++.+|+|+.+........++.++|+++|+++|.|+++ +++|+||+++++++++|+++
T Consensus 353 ~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~-~~~r~~a~~~~~~a~~Av~~ 431 (449)
T PLN02173 353 SLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKS-KEMKENAGKWRDLAVKSLSE 431 (449)
T ss_pred HcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999997677999988631111236999999999999998888 99999999999999999999
Q ss_pred CCchHHHHHHHHHHHH
Q 041419 470 SGSSYKSLSQVAKQCE 485 (498)
Q Consensus 470 ~g~~~~~~~~~~~~~~ 485 (498)
||+|++++++|++++.
T Consensus 432 gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 432 GGSTDININTFVSKIQ 447 (449)
T ss_pred CCcHHHHHHHHHHHhc
Confidence 9999999999999874
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-65 Score=525.75 Aligned_cols=442 Identities=24% Similarity=0.367 Sum_probs=335.9
Q ss_pred CCC-CCCCCeEEEEcCCCccCHHHHHHHHHH--HHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCC
Q 041419 1 MQS-TKLKPHICLLASPGMGHLIPVVELGKR--LVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISS 77 (498)
Q Consensus 1 ~~~-~~~~~~Ill~~~p~~GHv~P~l~LA~~--L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (498)
|++ ...+.||+|+|+|++||++|+++||++ |.+| |++|||++++.+.+++.... ... ..+++..++. +
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~~~~~-~~~---~~~~~~~~~~----g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLLSTVE-KPR---RPVDLVFFSD----G 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhhcccc-CCC---CceEEEECCC----C
Confidence 444 366789999999999999999999999 5688 99999999998766542211 111 2567766652 3
Q ss_pred CCCCCC--chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhh
Q 041419 78 LVNPDA--SLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAID 155 (498)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 155 (498)
+ +++. +....+..+...+.+.+.+++++. +|||||+|.+..|+..+|+++|||++.|++.++..+..+++.+...
T Consensus 72 l-p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~ 148 (456)
T PLN02210 72 L-PKDDPRAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT 148 (456)
T ss_pred C-CCCcccCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc
Confidence 3 3322 232333344445566777777775 7999999999999999999999999999999998887776543211
Q ss_pred hcccccccCCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccC
Q 041419 156 KKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLG 234 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~ 234 (498)
... +.. ........+||+++++..+++..+... ...+..+..+..+.....+++++||++++|++.+..+..
T Consensus 149 ~~~-~~~-~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~----- 221 (456)
T PLN02210 149 NSF-PDL-EDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD----- 221 (456)
T ss_pred CCC-Ccc-cccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-----
Confidence 111 110 111123468999888888888766555 333333423444556678899999999999998887654
Q ss_pred CCCCCCEEEeccCCCCC---CCCC---CCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcC
Q 041419 235 RVCKAPVYAIGPLVRSP---DVAS---PSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQ 308 (498)
Q Consensus 235 r~~~p~v~~vGpl~~~~---~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~ 308 (498)
.+++++|||+.+.. .... .......+..+.+|.+||+++++++||||||||+...+.+++.+++.+|+..+
T Consensus 222 ---~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 222 ---LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred ---cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 24699999997421 1000 00000012346789999999988999999999998889999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC-CCceeecCCccHHHHhccCCcceeeecCCcchHHH
Q 041419 309 QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVE 387 (498)
Q Consensus 309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~e 387 (498)
.+|+|+++.... ...+++|.++.+ +++ ++.+|+||.+||+|+++++|||||||||++|
T Consensus 299 ~~flw~~~~~~~--------------------~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~E 357 (456)
T PLN02210 299 VPFLWVIRPKEK--------------------AQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIE 357 (456)
T ss_pred CCEEEEEeCCcc--------------------ccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHH
Confidence 999999974311 112345666653 445 4569999999999999999999999999999
Q ss_pred HHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhh
Q 041419 388 SIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKAT 467 (498)
Q Consensus 388 al~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~ 467 (498)
|+++|||||++|+++||+.||+++++.+|+|+.+...+..+.+++++|+++|+++|.++++ +++|+||++|++.+++|+
T Consensus 358 ai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g-~~~r~~a~~l~~~a~~Av 436 (456)
T PLN02210 358 TVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAA-ADIRRRAAELKHVARLAL 436 (456)
T ss_pred HHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999996559999998631111368999999999999998777 899999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHh
Q 041419 468 SNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~ 486 (498)
++||||++++++|++++..
T Consensus 437 ~~gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 437 APGGSSARNLDLFISDITI 455 (456)
T ss_pred cCCCcHHHHHHHHHHHHhc
Confidence 9999999999999998753
No 9
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.6e-65 Score=521.81 Aligned_cols=435 Identities=24% Similarity=0.336 Sum_probs=336.2
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDA 83 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (498)
+..+.||+++|+|++||++|+++||+.|+.+ |++|||++++.+.+++... +... .+++|+.+|....++. + .
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~-~~~~---~~i~~v~lp~g~~~~~-~--~ 74 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISAT-LDPK---LGITFMSISDGQDDDP-P--R 74 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhc-cCCC---CCEEEEECCCCCCCCc-c--c
Confidence 5667899999999999999999999999999 9999999999876554332 2222 2699999875322111 1 1
Q ss_pred chHHHHHHHHH-HhhHHHHHHHHhcC--CCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcc-c
Q 041419 84 SLGEKILVLMH-KSLPALRSAISAMK--FRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKL-L 159 (498)
Q Consensus 84 ~~~~~~~~~~~-~~~~~l~~~l~~~~--~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~-~ 159 (498)
++. .+...+. .+.+.+.++++++. .+++|||+|.+..|+.++|+++|||+++|++++++.++.+++.|.+.... .
T Consensus 75 ~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 75 DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 222 2223333 46677888887752 24589999999999999999999999999999998888877666433221 0
Q ss_pred ccc-cCCCCCcc-cCCCCCCCCcccccccccCC--Cch-hHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccC
Q 041419 160 TDE-HFNLEKPM-ELPGCMPVRFQDSLELFLHP--NEP-IFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLG 234 (498)
Q Consensus 160 ~~~-~~~~~~~~-~~pg~~~l~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~ 234 (498)
... .....+++ .+||+++++..+++.++... ... +..+ .+..+...+++++++|||.+||+..+..+... ++
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~ 230 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFW-TRTLERTKSLRWILMNSFKDEEYDDVKNHQAS--YN 230 (448)
T ss_pred ccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHH-HHHHhccccCCEEEEcChhhhCHHHHHHHHhh--hc
Confidence 110 00111222 58999889888998765433 222 3333 56667778889999999999999887766543 24
Q ss_pred CCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCC-CCCHHHHHHHHHHHHhcCCcEEE
Q 041419 235 RVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGG-TLSAKQMTELAWSLELSQQRFIW 313 (498)
Q Consensus 235 r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~ 313 (498)
||..|+++.|||++..... ..++....+.+.+|.+||+++++++||||||||+. .++.+++.+++.+|++.+.+|||
T Consensus 231 ~~~~~~v~~iGpl~~~~~~--~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW 308 (448)
T PLN02562 231 NGQNPQILQIGPLHNQEAT--TITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIW 308 (448)
T ss_pred cccCCCEEEecCccccccc--ccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEE
Confidence 5556789999999864320 00001111335678899999988899999999985 67899999999999999999999
Q ss_pred EEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCC
Q 041419 314 VVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGV 393 (498)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~Gv 393 (498)
+++... .+.+|++|.++.++ |+++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 309 ~~~~~~--------------------~~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~Gv 367 (448)
T PLN02562 309 VLNPVW--------------------REGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQK 367 (448)
T ss_pred EEcCCc--------------------hhhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCC
Confidence 996421 13578899888876 556669999999999999999999999999999999999
Q ss_pred cEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCch
Q 041419 394 PMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSS 473 (498)
Q Consensus 394 P~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~ 473 (498)
|||++|+++||+.||+++++.+|+|+.+. +++.++|+++|+++|.| ++||+||+++++++.++ .+||||
T Consensus 368 P~l~~P~~~DQ~~na~~~~~~~g~g~~~~------~~~~~~l~~~v~~~l~~----~~~r~~a~~l~~~~~~~-~~gGSS 436 (448)
T PLN02562 368 RLLCYPVAGDQFVNCAYIVDVWKIGVRIS------GFGQKEVEEGLRKVMED----SGMGERLMKLRERAMGE-EARLRS 436 (448)
T ss_pred CEEeCCcccchHHHHHHHHHHhCceeEeC------CCCHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHhc-CCCCCH
Confidence 99999999999999999965689998863 47899999999999988 78999999999998877 678999
Q ss_pred HHHHHHHHHHH
Q 041419 474 YKSLSQVAKQC 484 (498)
Q Consensus 474 ~~~~~~~~~~~ 484 (498)
++++++|++++
T Consensus 437 ~~nl~~~v~~~ 447 (448)
T PLN02562 437 MMNFTTLKDEL 447 (448)
T ss_pred HHHHHHHHHHh
Confidence 99999999976
No 10
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.2e-65 Score=523.06 Aligned_cols=457 Identities=27% Similarity=0.418 Sum_probs=340.7
Q ss_pred CCCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCC-CCCCCC
Q 041419 3 STKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANI-SSLVNP 81 (498)
Q Consensus 3 ~~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 81 (498)
||.+++||+++|+|++||++|+++||+.|+.+ |+.|||++++.+..++....-.....+..++|+.++.+.. +++ ++
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~ 81 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PI 81 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CC
Confidence 45667899999999999999999999999999 9999999999876544322111111112489999986643 344 54
Q ss_pred CCc---------hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhh
Q 041419 82 DAS---------LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAP 152 (498)
Q Consensus 82 ~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 152 (498)
+.+ +...+...+....+.+.+++++...+|+|||+|.+..|+..+|+++|||+++|++++++..+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 82 GCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred CccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 321 22223334445566777777764447899999999999999999999999999999998776644321
Q ss_pred hhhhcccccccCCCCCcccCCCCCC---CCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhh
Q 041419 153 AIDKKLLTDEHFNLEKPMELPGCMP---VRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRD 229 (498)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~pg~~~---l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~ 229 (498)
..... ........++.+||+++ ++..+++..+... ..+..+.........+++++++|||.+||+..+..++.
T Consensus 162 -~~~~~--~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 162 -LHNAH--LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred -Hhccc--ccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 11100 00111123456889874 6777777654332 11233322222233457799999999999999988865
Q ss_pred ccccCCCCCCCEEEeccCCCCCCCCCCCC-CCCCCc-chhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhc
Q 041419 230 DNLLGRVCKAPVYAIGPLVRSPDVASPST-KTSPSD-SRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELS 307 (498)
Q Consensus 230 ~~~~~r~~~p~v~~vGpl~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~ 307 (498)
. + .++++.|||+........... ...... .+.+|.+||+++++++||||||||+....++++.+++.+|+.+
T Consensus 238 ~--~----~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~ 311 (491)
T PLN02534 238 A--I----KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEAS 311 (491)
T ss_pred h--c----CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Confidence 3 1 256999999974321000000 000011 2357999999999899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHH
Q 041419 308 QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVE 387 (498)
Q Consensus 308 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~e 387 (498)
+++|+|+++.+... .......+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++|
T Consensus 312 ~~~flW~~r~~~~~--------------~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~e 377 (491)
T PLN02534 312 KKPFIWVIKTGEKH--------------SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIE 377 (491)
T ss_pred CCCEEEEEecCccc--------------cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHH
Confidence 99999999743110 0001124689999988888999989999999999999999999999999999
Q ss_pred HHhhCCcEEeccccccchhhHHHHhhhhcceEEeec------cCCC--C-CcCHHHHHHHHHHHhc--CCcchHHHHHHH
Q 041419 388 SIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKE------LPTE--S-LVTRQEIEMLVRKIMV--DKEGHSSIRVRA 456 (498)
Q Consensus 388 al~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~------~~~~--~-~~~~~~l~~al~~vl~--~~~~~~~~~~~a 456 (498)
|+++|||||++|++.||+.||+++++.+|+|+++.- .+.. + .+++++|+++|+++|. ++++ +++|+||
T Consensus 378 a~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg-~~~R~rA 456 (491)
T PLN02534 378 GICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEG-ERRRRRA 456 (491)
T ss_pred HHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccH-HHHHHHH
Confidence 999999999999999999999999889999998741 0000 1 3799999999999997 4667 8999999
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHh
Q 041419 457 MELKYGAQKATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 457 ~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 486 (498)
++|++++++|+.+||||++++++|++++..
T Consensus 457 ~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 457 QELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999864
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.3e-65 Score=521.33 Aligned_cols=425 Identities=23% Similarity=0.349 Sum_probs=330.8
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCc
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDAS 84 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (498)
..++||+++|+|++||++|+++||+.|+.+ ||+|||++++.+..++...+. . ..++++..++.+..+++ +.+..
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~~~a--~--~~~i~~~~l~~p~~dgL-p~g~~ 75 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEHHNL--F--PDSIVFHPLTIPPVNGL-PAGAE 75 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhcccC--C--CCceEEEEeCCCCccCC-CCCcc
Confidence 457899999999999999999999999999 999999999987665443221 1 12567766655433444 44321
Q ss_pred ----h----HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhh
Q 041419 85 ----L----GEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDK 156 (498)
Q Consensus 85 ----~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 156 (498)
. ...+...+....+.+++++++. ++||||+| ++.|+..+|+++|||++.|++++++... +++.+. .
T Consensus 76 ~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~ 149 (442)
T PLN02208 76 TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--G 149 (442)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--c
Confidence 1 1223444566677788888877 89999999 4788999999999999999999998654 444332 1
Q ss_pred cccccccCCCCCcccCCCCCC----CCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhcc
Q 041419 157 KLLTDEHFNLEKPMELPGCMP----VRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDN 231 (498)
Q Consensus 157 ~~~~~~~~~~~~~~~~pg~~~----l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~ 231 (498)
.. ...+||+|. ++..+++.+ .. ...+..+..+..+...+++++++|||.+||++.+..+..
T Consensus 150 ~~----------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~-- 215 (442)
T PLN02208 150 KL----------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR-- 215 (442)
T ss_pred cc----------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh--
Confidence 10 012577764 345556542 22 333444433344566789999999999999998887754
Q ss_pred ccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcE
Q 041419 232 LLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRF 311 (498)
Q Consensus 232 ~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 311 (498)
+..|+++.|||+..... .....+.+|.+||+++++++||||||||+..++.+++.+++.+++..+.++
T Consensus 216 ----~~~~~v~~vGpl~~~~~--------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 216 ----QYHKKVLLTGPMFPEPD--------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred ----hcCCCEEEEeecccCcC--------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 32467999999986432 112357899999999988999999999999899999999999999999999
Q ss_pred EEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhh
Q 041419 312 IWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVN 391 (498)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~ 391 (498)
+|+++.+.+. +. ....+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 284 ~wv~r~~~~~--------------~~-~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~ 348 (442)
T PLN02208 284 LIAVKPPRGS--------------ST-VQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVS 348 (442)
T ss_pred EEEEeCCCcc--------------cc-hhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHc
Confidence 9999754210 00 12468999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhhcc
Q 041419 392 GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK--EGHSSIRVRAMELKYGAQKATSN 469 (498)
Q Consensus 392 GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~--~~~~~~~~~a~~l~~~~~~a~~~ 469 (498)
|||||++|+++||+.||+++++.+|+|+.++..+ ++.+++++|+++|+++|+++ ++ +++|+||+++++.+. +
T Consensus 349 GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~~~~~~~~l~~ai~~~m~~~~e~g-~~~r~~~~~~~~~~~----~ 422 (442)
T PLN02208 349 DCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-TGWFSKESLSNAIKSVMDKDSDLG-KLVRSNHTKLKEILV----S 422 (442)
T ss_pred CCCEEecCcchhhHHHHHHHHHHhceeEEecccc-CCcCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHHh----c
Confidence 9999999999999999999866699999986311 12489999999999999864 35 889999999999963 4
Q ss_pred CCchHHHHHHHHHHHHhhc
Q 041419 470 SGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 470 ~g~~~~~~~~~~~~~~~~~ 488 (498)
+|+|..++++|++++.+.+
T Consensus 423 ~gsS~~~l~~~v~~l~~~~ 441 (442)
T PLN02208 423 PGLLTGYVDKFVEELQEYL 441 (442)
T ss_pred CCcHHHHHHHHHHHHHHhc
Confidence 7899999999999986653
No 12
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7e-65 Score=518.50 Aligned_cols=449 Identities=30% Similarity=0.551 Sum_probs=338.7
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCC--CEEEEEEcCCCCcccccccccCC-CCCCCeEEEecCCCCC-CCCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHD--VQVTVFVVASHDDASNSNVHAVP-NNNNLFNAVTLPLANI-SSLVN 80 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~ 80 (498)
|.+.||+|+|+|++||++|+++||+.|+.+ | ..|||++++.+.+...+..+... ....+++|+.+|.... ++. .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 78 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTL-G 78 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcc-c
Confidence 456899999999999999999999999998 8 99999999986531112222211 1112699999984321 110 1
Q ss_pred CCCchHHHHHHHHHHhhH----HHHHHHHhcC---CCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhh
Q 041419 81 PDASLGEKILVLMHKSLP----ALRSAISAMK---FRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPA 153 (498)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~----~l~~~l~~~~---~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 153 (498)
...+....+...+....+ .+.+++++.. ++++|||+|.+..|+.++|+++|||++.|++++++.++.+++.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 112333344445444433 3455554431 234999999999999999999999999999999999888877665
Q ss_pred hhhcccccc-cCCCCCcccCCCC-CCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhcc
Q 041419 154 IDKKLLTDE-HFNLEKPMELPGC-MPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDN 231 (498)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~pg~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~ 231 (498)
..... ... .......+.+||+ ++++..+++.++...+. +..+ .+......+.+++++||+++||++.+..+..
T Consensus 159 ~~~~~-~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~-~~~~-~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~-- 233 (468)
T PLN02207 159 RHSKD-TSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG-YDAY-VKLAILFTKANGILVNSSFDIEPYSVNHFLD-- 233 (468)
T ss_pred ccccc-cccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc-HHHH-HHHHHhcccCCEEEEEchHHHhHHHHHHHHh--
Confidence 33211 110 0011123568998 67999999987643332 3333 4555577889999999999999998887754
Q ss_pred ccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcE
Q 041419 232 LLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRF 311 (498)
Q Consensus 232 ~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 311 (498)
|+..|+++.|||+...... .... .....+++|.+||+++++++||||||||+..++.+++++++.+|+.++++|
T Consensus 234 ---~~~~p~v~~VGPl~~~~~~--~~~~-~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 234 ---EQNYPSVYAVGPIFDLKAQ--PHPE-QDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred ---ccCCCcEEEecCCcccccC--CCCc-cccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 2335779999999864320 0000 001123689999999988999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhh
Q 041419 312 IWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVN 391 (498)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~ 391 (498)
||+++.+.. . ..+.+|++|.++.++++ .+.+|+||.+||+|+++++|||||||||++||+++
T Consensus 308 lW~~r~~~~---------------~--~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~ 369 (468)
T PLN02207 308 LWSLRTEEV---------------T--NDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWF 369 (468)
T ss_pred EEEEeCCCc---------------c--ccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHc
Confidence 999975311 0 12458999999988755 55599999999999999999999999999999999
Q ss_pred CCcEEeccccccchhhHHHHhhhhcceEEeec---cCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhc
Q 041419 392 GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKE---LPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATS 468 (498)
Q Consensus 392 GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~---~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~ 468 (498)
|||||++|+++||+.||+++++.+|+|+.+.. .+.++.++.++|+++|+++|.+ ++ ++||+||+++++++++|++
T Consensus 370 GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~-~~~r~~a~~l~~~a~~A~~ 447 (468)
T PLN02207 370 GVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DN-NVVRKRVMDISQMIQRATK 447 (468)
T ss_pred CCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-ch-HHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998667999997741 1111346999999999999973 34 8999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHh
Q 041419 469 NSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 469 ~~g~~~~~~~~~~~~~~~ 486 (498)
+||||++++++|++++..
T Consensus 448 ~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 448 NGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999998864
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.2e-65 Score=517.32 Aligned_cols=441 Identities=33% Similarity=0.590 Sum_probs=332.4
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCC--CEEEEEE--cCCCCcccccccccCC-CCCCCeEEEecCCCCC-CCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHD--VQVTVFV--VASHDDASNSNVHAVP-NNNNLFNAVTLPLANI-SSL 78 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~ 78 (498)
|.+.||+++|+|++||++||++||+.|+.+ | +.||+.. ++.+...+. ..++.. ....+++|+.+|.... ++.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTA-TYISSVSSSFPSITFHHLPAVTPYSSS 78 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhh-hhhccccCCCCCeEEEEcCCCCCCCCc
Confidence 356899999999999999999999999998 8 5666644 433222111 111110 1112699999986532 222
Q ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHhc-C-CCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhh
Q 041419 79 VNPDASLGEKILVLMHKSLPALRSAISAM-K-FRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDK 156 (498)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 156 (498)
.....+....+........+.+.++++++ . ++++|||+|.+..|+..+|+++|||+++|++++++.++.+++.|...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 01111222344445556677778888876 2 345999999999999999999999999999999999998887664332
Q ss_pred cccccccCCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCC
Q 041419 157 KLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGR 235 (498)
Q Consensus 157 ~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r 235 (498)
.. +.........+.+||+++++..+++..+..+ ...+..+ .+....+.+++++++|||++||++.+..+.... .
T Consensus 159 ~~-~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~--~- 233 (451)
T PLN03004 159 TT-PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVF-IMFGKQLSKSSGIIINTFDALENRAIKAITEEL--C- 233 (451)
T ss_pred cc-cccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHH-HHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC--C-
Confidence 21 1110011123568999999999999876655 3323333 556667778899999999999999998886531 1
Q ss_pred CCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEE
Q 041419 236 VCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVV 315 (498)
Q Consensus 236 ~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (498)
.++++.|||+...... .... ...+.+|.+||+++++++||||||||+..++.+++++++.+|+.++++|+|++
T Consensus 234 --~~~v~~vGPl~~~~~~----~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~ 306 (451)
T PLN03004 234 --FRNIYPIGPLIVNGRI----EDRN-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVV 306 (451)
T ss_pred --CCCEEEEeeeccCccc----cccc-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 2479999999753210 0001 11246799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcE
Q 041419 316 RPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPM 395 (498)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~ 395 (498)
+.+.... . + ..+ ..+.+|++|.+|.+++|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 307 r~~~~~~-~-------~--~~~-~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~ 375 (451)
T PLN03004 307 RNPPELE-K-------T--ELD-LKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPM 375 (451)
T ss_pred cCCcccc-c-------c--ccc-hhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCE
Confidence 8531100 0 0 000 112389999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHH
Q 041419 396 IAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYK 475 (498)
Q Consensus 396 v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 475 (498)
|++|+++||+.||+++++++|+|+.++..+ .+.+++++|+++|+++|.| ++||+||+++++.+++|+++||||++
T Consensus 376 v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~-~~~~~~e~l~~av~~vm~~----~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 376 VAWPLYAEQRFNRVMIVDEIKIAISMNESE-TGFVSSTEVEKRVQEIIGE----CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred EeccccccchhhHHHHHHHhCceEEecCCc-CCccCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999965789999986311 1357999999999999987 78999999999999999999999864
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-64 Score=515.52 Aligned_cols=447 Identities=24% Similarity=0.388 Sum_probs=338.9
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDA 83 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (498)
+..++||+++|+|++||++|+++||+.|+.| |+.|||++++.+..++... .... ..+++++.++.+..+++ +++.
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~-~~~~--~~~i~~~~lp~p~~dgl-p~~~ 77 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKI-PSQL--SSSITLVSFPLPSVPGL-PSSA 77 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhc-cccC--CCCeeEEECCCCccCCC-CCCc
Confidence 3456899999999999999999999999999 9999999999876554321 1111 13699999997766665 5432
Q ss_pred ----chH----HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhh
Q 041419 84 ----SLG----EKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAID 155 (498)
Q Consensus 84 ----~~~----~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 155 (498)
+.. ..+........+.+++++++. +++|||+|.+..|+..+|+++|||+++|++++++..+.+++.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 121 123344455666777777776 8999999999999999999999999999999998888765433221
Q ss_pred hcccccccCCCCCcc-cCCCCCC------CCcccccccccCC--C-chhHHHHHHHhhcccCCcEEEEcCccccChHHHH
Q 041419 156 KKLLTDEHFNLEKPM-ELPGCMP------VRFQDSLELFLHP--N-EPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLG 225 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~pg~~~------l~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~ 225 (498)
... . .....+.. .+|+..+ ++..+++.++... . ..+..+ .+......+++++++|||++||+..+.
T Consensus 156 ~~~-~--~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~~~gvlvNTf~eLE~~~l~ 231 (472)
T PLN02670 156 EGG-D--LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDS-VRFGFAIGGSDVVIIRSSPEFEPEWFD 231 (472)
T ss_pred hcc-c--CCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHH-HHHHhhcccCCEEEEeCHHHHhHHHHH
Confidence 111 1 00111111 2444322 4455777655322 2 234444 455556778899999999999999999
Q ss_pred hhhhccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHH
Q 041419 226 SLRDDNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLE 305 (498)
Q Consensus 226 ~~~~~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~ 305 (498)
.++... .++++.|||+............+. ...+++|.+||+++++++||||||||+..++.+++.+++.+|+
T Consensus 232 ~l~~~~------~~~v~~VGPl~~~~~~~~~~~~~~-~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~ 304 (472)
T PLN02670 232 LLSDLY------RKPIIPIGFLPPVIEDDEEDDTID-VKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLE 304 (472)
T ss_pred HHHHhh------CCCeEEEecCCccccccccccccc-cchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 886530 257999999975311000000000 0123689999999988999999999999999999999999999
Q ss_pred hcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchH
Q 041419 306 LSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNST 385 (498)
Q Consensus 306 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~ 385 (498)
.++++|+|+++.+... .......+|++|.++.+++++++.+|+||.+||+|+++++|||||||||+
T Consensus 305 ~s~~~FlWv~r~~~~~--------------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~ 370 (472)
T PLN02670 305 KSETPFFWVLRNEPGT--------------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSV 370 (472)
T ss_pred HCCCCEEEEEcCCccc--------------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchH
Confidence 9999999999753210 00012468999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 041419 386 VESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQK 465 (498)
Q Consensus 386 ~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~ 465 (498)
+||+++|||||++|+++||+.||+++ +++|+|+.+...+.++.++.++|+++|+++|.|+++ ++||+||+++++.++
T Consensus 371 ~Eai~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g-~~~r~~a~~l~~~~~- 447 (472)
T PLN02670 371 VEGLGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAG-EEIRDKAKEMRNLFG- 447 (472)
T ss_pred HHHHHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999 589999998632211358999999999999998777 799999999999955
Q ss_pred hhccCCchHHHHHHHHHHHHhhc
Q 041419 466 ATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 466 a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
+.+.....+++|++.+..+.
T Consensus 448 ---~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 448 ---DMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred ---CcchhHHHHHHHHHHHHHhc
Confidence 45777788899999888765
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.8e-64 Score=513.11 Aligned_cols=437 Identities=27% Similarity=0.416 Sum_probs=331.6
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHh-CCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCC-
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVA-HHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPD- 82 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 82 (498)
|.+.||+++|+|++||++|+++||+.|+. + |+.|||++++.+..+ ......+...+++|+.++. ++ +.+
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~-G~~vT~v~t~~~~~~---~~~~~~~~~~~i~~~~i~d----gl-p~g~ 71 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTT-GTRVTFATCLSVIHR---SMIPNHNNVENLSFLTFSD----GF-DDGV 71 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCC-CcEEEEEeccchhhh---hhhccCCCCCCEEEEEcCC----CC-CCcc
Confidence 35679999999999999999999999995 6 999999999964211 1122111112689998873 33 322
Q ss_pred ----CchHHHHHHHHHHhhHHHHHHHHhc--C-CCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhh
Q 041419 83 ----ASLGEKILVLMHKSLPALRSAISAM--K-FRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAID 155 (498)
Q Consensus 83 ----~~~~~~~~~~~~~~~~~l~~~l~~~--~-~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 155 (498)
.+....+......+.+.+.+++++. . .+++|||+|.+..|+.++|+++|||++.|++++++.++.+++.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~ 151 (455)
T PLN02152 72 ISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN 151 (455)
T ss_pred ccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC
Confidence 2333445555566677888888875 1 34599999999999999999999999999999999988877644211
Q ss_pred hcccccccCCCCCcccCCCCCCCCcccccccccCC--CchhHHHHHHHhhccc--CCcEEEEcCccccChHHHHhhhhcc
Q 041419 156 KKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP--NEPIFDFISSIGMKMS--LSDGILVNTWDDLEPKTLGSLRDDN 231 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~lv~s~~~l~~~~~~~~~~~~ 231 (498)
.....+||+++++..+++.++... +..+..++.+..+... ..+++++|||++||+..+..+..
T Consensus 152 -----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-- 218 (455)
T PLN02152 152 -----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-- 218 (455)
T ss_pred -----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--
Confidence 123468999989999999876543 3333333344444433 24699999999999999887643
Q ss_pred ccCCCCCCCEEEeccCCCCCCCCCCCCCCC--C-CcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcC
Q 041419 232 LLGRVCKAPVYAIGPLVRSPDVASPSTKTS--P-SDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQ 308 (498)
Q Consensus 232 ~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~ 308 (498)
.+++.|||+.+.... ...+... . .+.+.+|.+||+++++++||||||||+..++.+++++++.+|+.++
T Consensus 219 -------~~v~~VGPL~~~~~~-~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~ 290 (455)
T PLN02152 219 -------IEMVAVGPLLPAEIF-TGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGK 290 (455)
T ss_pred -------CCEEEEcccCccccc-cccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcC
Confidence 259999999753210 0000000 0 1224589999999988899999999999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccCCCCC-cccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHH
Q 041419 309 QRFIWVVRPPVENDVSGSYLTVVDNNSAG-KLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVE 387 (498)
Q Consensus 309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~e 387 (498)
.+|||+++.+.... ... .+. .....+|++|.++.++.+ ++.+|+||.+||+|+++++|||||||||++|
T Consensus 291 ~~flWv~r~~~~~~-----~~~----~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~E 360 (455)
T PLN02152 291 RPFLWVITDKLNRE-----AKI----EGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLE 360 (455)
T ss_pred CCeEEEEecCcccc-----ccc----ccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHH
Confidence 99999997531100 000 000 000135789998887754 5559999999999999999999999999999
Q ss_pred HHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhh
Q 041419 388 SIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKAT 467 (498)
Q Consensus 388 al~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~ 467 (498)
|+++|||||++|+++||+.||+++++.+|+|+.+.. ++.+..++++|+++|+++|+|+ + .++|+||++|++.+++++
T Consensus 361 a~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~-~~~~~~~~e~l~~av~~vm~~~-~-~~~r~~a~~~~~~~~~a~ 437 (455)
T PLN02152 361 SLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRE-NSEGLVERGEIRRCLEAVMEEK-S-VELRESAEKWKRLAIEAG 437 (455)
T ss_pred HHHcCCCEEeccccccchHHHHHHHHHhCceEEeec-CcCCcCcHHHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999766678877752 2223469999999999999753 3 689999999999999999
Q ss_pred ccCCchHHHHHHHHHHH
Q 041419 468 SNSGSSYKSLSQVAKQC 484 (498)
Q Consensus 468 ~~~g~~~~~~~~~~~~~ 484 (498)
.+||+|++++++|++++
T Consensus 438 ~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 438 GEGGSSDKNVEAFVKTL 454 (455)
T ss_pred cCCCcHHHHHHHHHHHh
Confidence 99999999999999875
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.8e-64 Score=509.65 Aligned_cols=428 Identities=22% Similarity=0.374 Sum_probs=333.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCc-
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDAS- 84 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 84 (498)
.++||+++|+|++||++|+++||+.|+.+ |+.|||++++.+..++.. +...+....+.++.+|. .+++ +++.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~--~~~~~~~~~v~~~~~p~--~~gl-p~g~e~ 77 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH--LNLFPHNIVFRSVTVPH--VDGL-PVGTET 77 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc--cccCCCCceEEEEECCC--cCCC-CCcccc
Confidence 46899999999999999999999999999 999999999987655433 11111111366666663 2344 44421
Q ss_pred -------hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhc
Q 041419 85 -------LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKK 157 (498)
Q Consensus 85 -------~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 157 (498)
....+...+....+.+.+++++. +|||||+|+ ..|+.++|+++|||++.|++++++.++.+++ +. .
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---~ 150 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---G 150 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc---c
Confidence 11234445556667788888876 789999996 8899999999999999999999988877653 11 0
Q ss_pred ccccccCCCCCcccCCCCCC----CCccccccccc-CC---CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhh
Q 041419 158 LLTDEHFNLEKPMELPGCMP----VRFQDSLELFL-HP---NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRD 229 (498)
Q Consensus 158 ~~~~~~~~~~~~~~~pg~~~----l~~~~l~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~ 229 (498)
. . . ..+||+|. ++..+++.... .. ...+..++.+......+.+++++|||++||++.+..+..
T Consensus 151 ~----~---~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 151 E----L---G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred c----C---C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 0 0 0 12477762 55566655321 11 123344434444667788999999999999999988865
Q ss_pred ccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCC
Q 041419 230 DNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQ 309 (498)
Q Consensus 230 ~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (498)
. . .++++.|||+..... .....+.+|.+|||+++++|||||||||+..++.+++.+++.+|+..+.
T Consensus 222 ~---~---~~~v~~VGPL~~~~~--------~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~ 287 (453)
T PLN02764 222 H---C---RKKVLLTGPVFPEPD--------KTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGS 287 (453)
T ss_pred h---c---CCcEEEeccCccCcc--------ccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 3 0 246999999975432 1112357899999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHH
Q 041419 310 RFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESI 389 (498)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal 389 (498)
+|+|+++.+... ++ ....+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 288 pflwv~r~~~~~--------------~~-~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal 352 (453)
T PLN02764 288 PFLVAVKPPRGS--------------ST-IQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESL 352 (453)
T ss_pred CeEEEEeCCCCC--------------cc-hhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHH
Confidence 999999854220 11 234699999999999999999999999999999999999999999999999
Q ss_pred hhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhh
Q 041419 390 VNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK--EGHSSIRVRAMELKYGAQKAT 467 (498)
Q Consensus 390 ~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~--~~~~~~~~~a~~l~~~~~~a~ 467 (498)
++|||||++|++.||+.||+++++.+|+|+.+...+ .+.++.++|+++|+++|+++ ++ +++|+||+++++.+
T Consensus 353 ~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~~av~~vm~~~~~~g-~~~r~~a~~~~~~~---- 426 (453)
T PLN02764 353 LSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLRDAINSVMKRDSEIG-NLVKKNHTKWRETL---- 426 (453)
T ss_pred HcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHH----
Confidence 999999999999999999999976799999875210 13589999999999999873 45 78999999999996
Q ss_pred ccCCchHHHHHHHHHHHHhhccc
Q 041419 468 SNSGSSYKSLSQVAKQCEKSLQE 490 (498)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~~~~~ 490 (498)
+++|+|..++++|++++.+..+.
T Consensus 427 ~~~GSS~~~l~~lv~~~~~~~~~ 449 (453)
T PLN02764 427 ASPGLLTGYVDNFIESLQDLVSG 449 (453)
T ss_pred HhcCCHHHHHHHHHHHHHHhccc
Confidence 46899999999999999887654
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.4e-64 Score=518.95 Aligned_cols=454 Identities=34% Similarity=0.559 Sum_probs=336.3
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCC--CEEEEEEcCCCCcccc--cccccCCC--CCCCeEEEecCCCCCCCCCC
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHD--VQVTVFVVASHDDASN--SNVHAVPN--NNNLFNAVTLPLANISSLVN 80 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~~~--~~~~~~~~--~~~~i~~~~~~~~~~~~~~~ 80 (498)
|+||+|+|+|++||++||++||+.|+.+ | ..|||++++.+..+.. ...+...+ ...+++++.+|....+.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--- 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--- 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc---
Confidence 6899999999999999999999999998 8 8899999998754321 11111111 01269999988644211
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHhc----C---CC-CcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhh
Q 041419 81 PDASLGEKILVLMHKSLPALRSAISAM----K---FR-PTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAP 152 (498)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~---~~-pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 152 (498)
.. .. .+..++....+.+++.++++ . .+ .+|||+|.+..|+.++|+++|||++.|++++++.++.+++.|
T Consensus 78 ~~--~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 78 TE--DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cc--ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 11 11 22233344444444444433 1 13 389999999999999999999999999999999999988877
Q ss_pred hhhhcc-cc-cccCCCCCcccCCCCC-CCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhh
Q 041419 153 AIDKKL-LT-DEHFNLEKPMELPGCM-PVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRD 229 (498)
Q Consensus 153 ~~~~~~-~~-~~~~~~~~~~~~pg~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~ 229 (498)
...... .+ ........++.+||++ +++..+++..+..+ ..+..+ .+....+.+++++++||+.+||+.....+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~-~~~~~~-~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK-EWLPLF-LAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH-HHHHHH-HHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 643221 01 0111111234689984 78888887655332 223333 5566678889999999999999998888775
Q ss_pred ccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCC
Q 041419 230 DNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQ 309 (498)
Q Consensus 230 ~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (498)
.. +..|+++.|||+...... ........+++|.+||+++++++||||||||+..++.+++.+++.+|+.+++
T Consensus 233 ~~----~~~~~v~~vGpl~~~~~~----~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 233 SS----GDLPPVYPVGPVLHLENS----GDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred cc----cCCCCEEEeCCCcccccc----ccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 21 015689999999432110 0000123457899999999888999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHH
Q 041419 310 RFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESI 389 (498)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal 389 (498)
+|||+++.+..... . + ..+......+.+|++|.++.++++ ++.+|+||.+||+|+++++|||||||||+.||+
T Consensus 305 ~flW~~~~~~~~~~-~---~--~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~ 377 (481)
T PLN02554 305 RFLWSLRRASPNIM-K---E--PPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESL 377 (481)
T ss_pred CeEEEEcCCccccc-c---c--ccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHH
Confidence 99999975321000 0 0 000000011236899999887755 555999999999999999999999999999999
Q ss_pred hhCCcEEeccccccchhhHHHHhhhhcceEEeecc-------CCCCCcCHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Q 041419 390 VNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL-------PTESLVTRQEIEMLVRKIMV-DKEGHSSIRVRAMELKY 461 (498)
Q Consensus 390 ~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~-------~~~~~~~~~~l~~al~~vl~-~~~~~~~~~~~a~~l~~ 461 (498)
++|||||++|+++||+.||+++++++|+|+.++.. ...+.+++++|+++|+++|. | ++||+||+++++
T Consensus 378 ~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~----~~~r~~a~~l~~ 453 (481)
T PLN02554 378 WFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD----SDVRKRVKEMSE 453 (481)
T ss_pred HcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC----HHHHHHHHHHHH
Confidence 99999999999999999996655799999998520 00136899999999999997 4 789999999999
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHhhc
Q 041419 462 GAQKATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 462 ~~~~a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
++++|+++||+|++++++|++++..++
T Consensus 454 ~~~~av~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 454 KCHVALMDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998875
No 18
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-63 Score=508.60 Aligned_cols=425 Identities=24% Similarity=0.341 Sum_probs=323.4
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDA 83 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (498)
|.+++||+|+|+|++||++|+++||+.|+.+ |++|||++++.+..++..... . ..+++|..++.+..+++ +++.
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~~~--~--~~~i~~~~i~lP~~dGL-P~g~ 74 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPLNL--F--PDSIVFEPLTLPPVDGL-PFGA 74 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhccccc--C--CCceEEEEecCCCcCCC-CCcc
Confidence 3567899999999999999999999999999 999999999987655433321 1 12588877765544555 5542
Q ss_pred ch--------HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhh
Q 041419 84 SL--------GEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAID 155 (498)
Q Consensus 84 ~~--------~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 155 (498)
+. ...+........+.++++++.. +|||||+|+ +.|+.++|+++|||++.|++++++..+.+++ +.
T Consensus 75 e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~-- 148 (446)
T PLN00414 75 ETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR-- 148 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--
Confidence 21 1123344445566666666665 889999996 8899999999999999999999988887765 21
Q ss_pred hcccccccCCCCCcccCCCCCC----CCccccc--ccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhh
Q 041419 156 KKLLTDEHFNLEKPMELPGCMP----VRFQDSL--ELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRD 229 (498)
Q Consensus 156 ~~~~~~~~~~~~~~~~~pg~~~----l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~ 229 (498)
... . ..+||+|. ++..++. .++ .. ... .+.+..+...+++++++|||.+||+..++.+.+
T Consensus 149 ~~~-~---------~~~pg~p~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 149 AEL-G---------FPPPDYPLSKVALRGHDANVCSLF-AN--SHE-LFGLITKGLKNCDVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred hhc-C---------CCCCCCCCCcCcCchhhcccchhh-cc--cHH-HHHHHHHhhccCCEEEEechHHHHHHHHHHHHH
Confidence 111 0 12355543 2222211 111 11 112 224455566778999999999999999988876
Q ss_pred ccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCC
Q 041419 230 DNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQ 309 (498)
Q Consensus 230 ~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (498)
. . .++++.|||+..... .. .....+.+|.+|||+++++|||||||||+...+.+++.+++.+|+..+.
T Consensus 215 ~--~----~~~v~~VGPl~~~~~----~~--~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~ 282 (446)
T PLN00414 215 Q--C----QRKVLLTGPMLPEPQ----NK--SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGL 282 (446)
T ss_pred h--c----CCCeEEEcccCCCcc----cc--cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 3 1 246999999975321 00 0112246799999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHH
Q 041419 310 RFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESI 389 (498)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal 389 (498)
+|+|++..+... ++ ..+.+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+
T Consensus 283 ~Flwvvr~~~~~--------------~~-~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~ 347 (446)
T PLN00414 283 PFLIAVMPPKGS--------------ST-VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESL 347 (446)
T ss_pred CeEEEEecCCCc--------------cc-chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHH
Confidence 999999764220 11 124689999999999999998999999999999999999999999999999
Q ss_pred hhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhh
Q 041419 390 VNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK--EGHSSIRVRAMELKYGAQKAT 467 (498)
Q Consensus 390 ~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~--~~~~~~~~~a~~l~~~~~~a~ 467 (498)
++|||||++|+++||+.||+++++++|+|+.+...+ .+.+++++|+++++++|.|+ ++ +++|+||+++++.+ +
T Consensus 348 ~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i~~~v~~~m~~~~e~g-~~~r~~a~~~~~~~---~ 422 (446)
T PLN00414 348 VSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESLRDTVKSVMDKDSEIG-NLVKRNHKKLKETL---V 422 (446)
T ss_pred HcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHH---H
Confidence 999999999999999999999976899999986311 13589999999999999763 34 78999999999995 3
Q ss_pred ccCCchHHHHHHHHHHHHhh
Q 041419 468 SNSGSSYKSLSQVAKQCEKS 487 (498)
Q Consensus 468 ~~~g~~~~~~~~~~~~~~~~ 487 (498)
++||++ ..+++|++++.+.
T Consensus 423 ~~gg~s-s~l~~~v~~~~~~ 441 (446)
T PLN00414 423 SPGLLS-GYADKFVEALENE 441 (446)
T ss_pred cCCCcH-HHHHHHHHHHHHh
Confidence 567734 3389999998554
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.6e-63 Score=509.12 Aligned_cols=444 Identities=27% Similarity=0.415 Sum_probs=337.4
Q ss_pred CCCCCCeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCC
Q 041419 3 STKLKPHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNP 81 (498)
Q Consensus 3 ~~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (498)
|...++||+|+|+|++||++|+++||++|..++ ||+|||++++.+.+++.+.. . ..+++|+.++....++. ..
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-~----~~gi~fv~lp~~~p~~~-~~ 79 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-K----PDNIRFATIPNVIPSEL-VR 79 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-C----CCCEEEEECCCCCCCcc-cc
Confidence 347789999999999999999999999999763 89999999998876554432 1 13799999885222222 22
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcc-cc
Q 041419 82 DASLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKL-LT 160 (498)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~-~~ 160 (498)
..+....+..+...+.+.++++++++..++||||+|.++.|+..+|+++|||++.|+++++..++.+++.+.+.... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 80 AADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 22333334444445667788888775446899999999999999999999999999999998888777765433211 01
Q ss_pred cccCC-CCCcc-cCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCC
Q 041419 161 DEHFN-LEKPM-ELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVC 237 (498)
Q Consensus 161 ~~~~~-~~~~~-~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~ 237 (498)
..... ..... .+||+++++..+++.++... ...+..+ .+......+++++++||+++||+..+..++.. +
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~---- 232 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRI-LEAFSWVPKAQYLLFTSFYELEAQAIDALKSK--F---- 232 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHH-HHHHhhcccCCEEEEccHHHhhHHHHHHHHhh--c----
Confidence 11100 01112 47888888888888765544 3334444 55556677788999999999999988888664 1
Q ss_pred CCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcC
Q 041419 238 KAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRP 317 (498)
Q Consensus 238 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 317 (498)
.++++.|||+..................+.++.+||+.++++++|||||||+...+.+++.+++++|+..+.+|||+++.
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 23699999997532100000000001123589999999988999999999998888999999999999999999998753
Q ss_pred CCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEe
Q 041419 318 PVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIA 397 (498)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 397 (498)
.. .++.++.++ ++++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 313 ~~-------------------------~~~~~~~~~-~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 313 EA-------------------------SRLKEICGD-MGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLT 366 (459)
T ss_pred ch-------------------------hhHhHhccC-CEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEe
Confidence 21 134343333 5667799999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHhhhhcceEEeecc-CCCCCcCHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHhhccCCchH
Q 041419 398 WPLHAEQKMNATMLTEEIGVAFRSKEL-PTESLVTRQEIEMLVRKIMVDK--EGHSSIRVRAMELKYGAQKATSNSGSSY 474 (498)
Q Consensus 398 ~P~~~DQ~~na~~v~~~~GvG~~~~~~-~~~~~~~~~~l~~al~~vl~~~--~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 474 (498)
+|+++||+.||+++++.+|+|+.+... +..+.+++++|+++|+++|.|+ ++ +++|+||+++++++++|+++||||+
T Consensus 367 ~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~-~~~r~~a~~~~~~~~~a~~~gGss~ 445 (459)
T PLN02448 367 FPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEG-KEMRRRAKELQEICRGAIAKGGSSD 445 (459)
T ss_pred ccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999997568999888521 1113579999999999999863 56 7999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 041419 475 KSLSQVAKQCEK 486 (498)
Q Consensus 475 ~~~~~~~~~~~~ 486 (498)
+++++|++++.+
T Consensus 446 ~~l~~~v~~~~~ 457 (459)
T PLN02448 446 TNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.3e-62 Score=509.76 Aligned_cols=449 Identities=27% Similarity=0.442 Sum_probs=327.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCC--CCCCeEEEecCCCCCC-CCCCCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPN--NNNLFNAVTLPLANIS-SLVNPD 82 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~-~~~~~~ 82 (498)
+++||+|+|+|++||++|+++||+.|..| ||+|||++++.+.+++...+....+ .+..+++..++.+..+ ++ +++
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~gl-P~g 81 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGL-PEG 81 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCC-CCC
Confidence 45799999999999999999999999999 9999999999887655443322111 0112333333333221 22 321
Q ss_pred C---------------chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHH
Q 041419 83 A---------------SLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLAC 147 (498)
Q Consensus 83 ~---------------~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~ 147 (498)
. ++...+......+.+.+.+++++. +|||||+|.++.|+..+|+++|||+++|++++++..+.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 1 111112222234445555555554 89999999999999999999999999999998887766
Q ss_pred HhhhhhhhhcccccccCCCCCcccCCCCCC---CCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHH
Q 041419 148 FIHAPAIDKKLLTDEHFNLEKPMELPGCMP---VRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTL 224 (498)
Q Consensus 148 ~~~~p~~~~~~~~~~~~~~~~~~~~pg~~~---l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~ 224 (498)
.+.... .... . ..........+||+|. ++..+++. ......+..++....+...+.+++++||+++||+...
T Consensus 160 ~~~~~~-~~~~-~-~~~~~~~~~~~pg~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 160 SYCIRV-HKPQ-K-KVASSSEPFVIPDLPGDIVITEEQIND--ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHh-cccc-c-ccCCCCceeeCCCCCCccccCHHhcCC--CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 543221 1000 0 0001112234777763 33333332 1122234444345555677889999999999999988
Q ss_pred HhhhhccccCCCCC-CCEEEeccCCCCCCCCCCCC-CCC-CCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHH
Q 041419 225 GSLRDDNLLGRVCK-APVYAIGPLVRSPDVASPST-KTS-PSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELA 301 (498)
Q Consensus 225 ~~~~~~~~~~r~~~-p~v~~vGpl~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~ 301 (498)
..+.+. . +++++|||+........... ..+ .+..+.+|.+||+++++++||||||||+...+.+++.+++
T Consensus 235 ~~~~~~-------~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 235 DFYKSF-------VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHhc-------cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 777653 2 46999999864322000000 000 1113578999999998899999999999888899999999
Q ss_pred HHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCC
Q 041419 302 WSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCG 381 (498)
Q Consensus 302 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG 381 (498)
.+|+.++.+|+|+++..... ++ ....+|++|.++....|+++.+|+||.+||+|+++++||||||
T Consensus 308 ~~l~~~~~~flw~~~~~~~~--------------~~-~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G 372 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNENQ--------------GE-KEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCG 372 (482)
T ss_pred HHHHHCCCCEEEEEecCCcc--------------cc-hhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCc
Confidence 99999999999999754210 00 1245899999999888999999999999999999999999999
Q ss_pred cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC----CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHH
Q 041419 382 WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP----TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAM 457 (498)
Q Consensus 382 ~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~----~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~ 457 (498)
|||++||+++|||||++|+++||+.||+++++.+++|+.+.... +...+++++|+++|+++|.|+++ ++||+||+
T Consensus 373 ~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~-~~~r~~a~ 451 (482)
T PLN03007 373 WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEA-EERRLRAK 451 (482)
T ss_pred chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHH-HHHHHHHH
Confidence 99999999999999999999999999999866667776653100 12468999999999999998777 89999999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHh
Q 041419 458 ELKYGAQKATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 458 ~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 486 (498)
++++.+++|+.+||+|++++++|++++.+
T Consensus 452 ~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 452 KLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.3e-62 Score=505.46 Aligned_cols=453 Identities=31% Similarity=0.508 Sum_probs=333.0
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCC---EEEEEEcCCCCcccccccccCC-CCCCCeEEEecCCCCCCCCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDV---QVTVFVVASHDDASNSNVHAVP-NNNNLFNAVTLPLANISSLVN 80 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh---~Vt~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~ 80 (498)
+++.||+|+|+|++||++||++||+.|+.+ |. .||+++++.+.....+..+... ....+++|+++|....+....
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccc
Confidence 356799999999999999999999999998 83 5677776543221011111111 111269999998644211000
Q ss_pred -CCCchHHHHHHHHHHhhHHHHHHHHhcC-------C-CCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhh
Q 041419 81 -PDASLGEKILVLMHKSLPALRSAISAMK-------F-RPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHA 151 (498)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~-~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 151 (498)
........+..+...+.+.+++.++++. . +++|||+|.+..|+.++|+++|||+++|++++++.++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 0111112344455555666666666541 1 359999999999999999999999999999999998888876
Q ss_pred hhhhhcccccccC--CCCCcccCCCC-CCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhh
Q 041419 152 PAIDKKLLTDEHF--NLEKPMELPGC-MPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLR 228 (498)
Q Consensus 152 p~~~~~~~~~~~~--~~~~~~~~pg~-~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~ 228 (498)
|...... ..... ...+++.+||+ ++++..+++..+.... .+..+ .+..+...+++++++|||++||+..+.++.
T Consensus 160 ~~~~~~~-~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~-~~~~~-~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 160 PERHRKT-ASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE-SYEAW-VEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred HHhcccc-ccccccCCCCCeeECCCCCCCCChhhCchhhhCcc-hHHHH-HHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 6532221 11110 11133568998 4688888876544331 12222 455566788999999999999999988875
Q ss_pred hccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcC
Q 041419 229 DDNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQ 308 (498)
Q Consensus 229 ~~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~ 308 (498)
... + ..|+++.|||+....... . .......+.+|.+||+++++++||||||||+...+.+++.+++.+|+.++
T Consensus 237 ~~~--~--~~p~v~~vGpl~~~~~~~--~-~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 237 RLP--E--NYPPVYPVGPILSLKDRT--S-PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred hhc--c--cCCeeEEecccccccccc--C-CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 420 0 136799999998643200 0 00011224689999999988999999999998899999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHH
Q 041419 309 QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVES 388 (498)
Q Consensus 309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~ea 388 (498)
.+|||+++.+... .......+|++|.++++++++ +.+|+||.+||+|+++++|||||||||++||
T Consensus 310 ~~flw~~~~~~~~--------------~~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 374 (475)
T PLN02167 310 CRFLWSIRTNPAE--------------YASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLES 374 (475)
T ss_pred CcEEEEEecCccc--------------ccchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHH
Confidence 9999999753110 000124589999999987664 4599999999999999999999999999999
Q ss_pred HhhCCcEEeccccccchhhHHHHhhhhcceEEeecc---CCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 041419 389 IVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL---PTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQK 465 (498)
Q Consensus 389 l~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~---~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~ 465 (498)
+++|||||++|+++||+.||+++++++|+|+.+... +....+++++|+++|+++|.++ ++||+||+++++++++
T Consensus 375 l~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 375 LWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARK 451 (475)
T ss_pred HHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Confidence 999999999999999999998755799999998531 0013479999999999999763 4799999999999999
Q ss_pred hhccCCchHHHHHHHHHHHHh
Q 041419 466 ATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 466 a~~~~g~~~~~~~~~~~~~~~ 486 (498)
++++||+|+.++++|++++..
T Consensus 452 av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 452 AVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHhCCCcHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.4e-44 Score=370.81 Aligned_cols=378 Identities=18% Similarity=0.228 Sum_probs=249.5
Q ss_pred CeEEEE-cCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCC--CCC------CC
Q 041419 8 PHICLL-ASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLA--NIS------SL 78 (498)
Q Consensus 8 ~~Ill~-~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~------~~ 78 (498)
-+|+.+ |.++.+|..-+-+|+++|++| ||+||++++...... .. .. ...++...++.. ... ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~~-~~--~~----~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVYY-AS--HL----CGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccccc-cc--CC----CCCEEEEEcCCChHHHHHHHhhhhH
Confidence 347655 889999999999999999999 999999987642110 00 01 124444443210 000 00
Q ss_pred CCC-C--CchHHH----HHHHHHH-----hhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHh-CCcEEEEecchHHHH
Q 041419 79 VNP-D--ASLGEK----ILVLMHK-----SLPALRSAISAMKFRPTALIVDFFGTEAMDVADEF-GLLKYMFIASNAWFL 145 (498)
Q Consensus 79 ~~~-~--~~~~~~----~~~~~~~-----~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~l-giP~v~~~~~~~~~~ 145 (498)
+.. . .+.... +..+... ..+.+.+++++-..++|+||+|.+..|+..+|+.+ ++|+|.+++......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 000 0 000000 0111111 13345566651123799999999888888999999 999877766443211
Q ss_pred -HHHhh-hhhhhhcccccccCCCCCcccCCCCCC-----CC-cccccccccCC------C---chhHHHHHHHh------
Q 041419 146 -ACFIH-APAIDKKLLTDEHFNLEKPMELPGCMP-----VR-FQDSLELFLHP------N---EPIFDFISSIG------ 202 (498)
Q Consensus 146 -~~~~~-~p~~~~~~~~~~~~~~~~~~~~pg~~~-----l~-~~~l~~~~~~~------~---~~~~~~~~~~~------ 202 (498)
..... .|.. +..+|.... +. +.++.+.+... . .....+..+.+
T Consensus 173 ~~~~~gg~p~~--------------~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 173 NFETMGAVSRH--------------PVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred HHHhhccCCCC--------------CeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 11111 1211 112222111 11 11111111000 0 00000111110
Q ss_pred --hcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCc
Q 041419 203 --MKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQS 280 (498)
Q Consensus 203 --~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 280 (498)
+...+.+.+++|+.+.++ ++||..|++++|||+..+.. +..++++++.+|+++. +++
T Consensus 239 ~~~l~~~~~l~lvns~~~~d------------~~rp~~p~v~~vGgi~~~~~--------~~~~l~~~l~~fl~~~-~~g 297 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFD------------NNRPVPPSVQYLGGLHLHKK--------PPQPLDDYLEEFLNNS-TNG 297 (507)
T ss_pred HHHHHhCCcEEEEecCcccc------------CCCCCCCCeeeecccccCCC--------CCCCCCHHHHHHHhcC-CCc
Confidence 011123345555555444 55886677999999987542 2246789999999875 457
Q ss_pred EEEEEccCCC---CCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCcee
Q 041419 281 VIYVSFGSGG---TLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLV 357 (498)
Q Consensus 281 vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 357 (498)
+|||||||+. ..+.+.+..+++++++.+.+|||+++.... ...+|+ |+.
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------------------~~~~p~---------Nv~ 349 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------------------AINLPA---------NVL 349 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------------------cccCCC---------ceE
Confidence 9999999984 357888999999999999999999864311 013444 899
Q ss_pred ecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHH
Q 041419 358 VPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEM 437 (498)
Q Consensus 358 ~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~ 437 (498)
+.+|+||.+||+|+.+++||||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++. .+++.++|++
T Consensus 350 i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~----~~~t~~~l~~ 424 (507)
T PHA03392 350 TQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT----VTVSAAQLVL 424 (507)
T ss_pred EecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc----CCcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 69999999874 6789999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 041419 438 LVRKIMVDKEGHSSIRVRAMELKYGAQK 465 (498)
Q Consensus 438 al~~vl~~~~~~~~~~~~a~~l~~~~~~ 465 (498)
+|+++|+| ++||+||+++++.++.
T Consensus 425 ai~~vl~~----~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 425 AIVDVIEN----PKYRKNLKELRHLIRH 448 (507)
T ss_pred HHHHHhCC----HHHHHHHHHHHHHHHh
Confidence 99999998 8899999999999774
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=4.6e-46 Score=392.36 Aligned_cols=381 Identities=23% Similarity=0.298 Sum_probs=216.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCC-CchHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPD-ASLGE 87 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~ 87 (498)
+|+++|. +.+|+.++..|+++|++| ||+||++++...... .... ...+++..++.....+..... .+...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPSSSL-NPSK------PSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeeccccc-cccc------ccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 4677774 789999999999999999 999999987541110 0000 124455444432211110111 11111
Q ss_pred H-H---------HHHHHH-------hh---------HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecch
Q 041419 88 K-I---------LVLMHK-------SL---------PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 88 ~-~---------~~~~~~-------~~---------~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~ 141 (498)
. + ...... .. +.+.+.++.. ++|++|+|.+..|+..+|+.+|+|.+.+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 1 0 000000 00 0111222332 78999999988888899999999987533211
Q ss_pred HHHHHHHhhhhhhhhcccccccCCCCCcccCCCCCCCCcccccc--cccCC--CchhHHHHHHHhhcccC-CcE--EEEc
Q 041419 142 AWFLACFIHAPAIDKKLLTDEHFNLEKPMELPGCMPVRFQDSLE--LFLHP--NEPIFDFISSIGMKMSL-SDG--ILVN 214 (498)
Q Consensus 142 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~--~lv~ 214 (498)
. .+... .........|+..|.....+.. .+.+| +..+............. .+. .-..
T Consensus 151 ~--------~~~~~--------~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (500)
T PF00201_consen 151 P--------MYDLS--------SFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYF 214 (500)
T ss_dssp S--------CSCCT--------CCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEES
T ss_pred c--------cchhh--------hhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhc
Confidence 1 00000 0000001122222222222222 24444 22222211111111111 111 1111
Q ss_pred Ccc----ccChHHHHhhhh---ccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEcc
Q 041419 215 TWD----DLEPKTLGSLRD---DNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFG 287 (498)
Q Consensus 215 s~~----~l~~~~~~~~~~---~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~G 287 (498)
..+ ++.......+-+ ..++|||..|++++||++..... .+++.++.+|+++..++++||||||
T Consensus 215 ~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~----------~~l~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 215 GFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPA----------KPLPEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp S-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S--------------TCHHHHHHHTSTTTTTEEEEEE-T
T ss_pred ccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccc----------cccccccchhhhccCCCCEEEEecC
Confidence 111 111111111111 25778997788999999987655 4678999999987557789999999
Q ss_pred CCCC-CCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHH
Q 041419 288 SGGT-LSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAE 366 (498)
Q Consensus 288 S~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~ 366 (498)
|+.. ++.+..+++++++++.+++|||+++.. ....+|+ |+.+.+|+||.+
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~--------------------~~~~l~~---------n~~~~~W~PQ~~ 335 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE--------------------PPENLPK---------NVLIVKWLPQND 335 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS--------------------HGCHHHT---------TEEEESS--HHH
T ss_pred cccchhHHHHHHHHHHHHhhCCCccccccccc--------------------ccccccc---------eEEEeccccchh
Confidence 9854 444557889999999999999999642 1233444 889999999999
Q ss_pred HhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC
Q 041419 367 ILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 367 lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
||+|+++++||||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++. .+++.++|.++|+++|+|
T Consensus 336 lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~----~~~~~~~l~~ai~~vl~~- 409 (500)
T PF00201_consen 336 LLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK----NDLTEEELRAAIREVLEN- 409 (500)
T ss_dssp HHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG----GC-SHHHHHHHHHHHHHS-
T ss_pred hhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe----cCCcHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999 69999999884 789999999999999999
Q ss_pred cchHHHHHHHHHHHHHHH
Q 041419 447 EGHSSIRVRAMELKYGAQ 464 (498)
Q Consensus 447 ~~~~~~~~~a~~l~~~~~ 464 (498)
++|++||++++.+++
T Consensus 410 ---~~y~~~a~~ls~~~~ 424 (500)
T PF00201_consen 410 ---PSYKENAKRLSSLFR 424 (500)
T ss_dssp ---HHHHHHHHHHHHTTT
T ss_pred ---hHHHHHHHHHHHHHh
Confidence 889999999999855
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.9e-41 Score=347.58 Aligned_cols=367 Identities=16% Similarity=0.142 Sum_probs=229.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCC----CC----C
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANIS----SL----V 79 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~----~ 79 (498)
|||+|+++|+.||++|+++||++|++| ||+|+|++++.+...+.+. +++|..++..... .. .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhcccc
Confidence 799999999999999999999999999 9999999999876665555 4445444321100 00 0
Q ss_pred --CCCCchHHH---HHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhh
Q 041419 80 --NPDASLGEK---ILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAI 154 (498)
Q Consensus 80 --~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 154 (498)
......... +..........+.+.++++ +||+||+|.+.+++..+|+++|||++.+++++....+...+ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-~-- 145 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP-P-- 145 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC-c--
Confidence 000011111 1222222333334444445 99999999988888999999999999988765422111000 0
Q ss_pred hhcccccccCCCCCcccCCCCCCCCcccccccccC-C-CchhHHHHHHHhhcccCCcEEEEcC-ccccChHHHHhhhhcc
Q 041419 155 DKKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLH-P-NEPIFDFISSIGMKMSLSDGILVNT-WDDLEPKTLGSLRDDN 231 (498)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~lv~s-~~~l~~~~~~~~~~~~ 231 (498)
. + .... ........ . ...+...+.+....+ ++-..+ +..........+...+
T Consensus 146 -----------------~-~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 146 -----------------L-G--RANL-RLYALLEAELWQDLLGAWLRARRRRL----GLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred -----------------c-c--hHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCcccccCCCcEEEecCccc
Confidence 0 0 0000 00000000 0 000111101111111 100000 0000000011111111
Q ss_pred ccCCCCCCC-EEEec-cCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCH-HHHHHHHHHHHhcC
Q 041419 232 LLGRVCKAP-VYAIG-PLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSA-KQMTELAWSLELSQ 308 (498)
Q Consensus 232 ~~~r~~~p~-v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~ 308 (498)
..+++.+++ ..++| ++...+. +...+.++..|++. .+++||||+||+..... +....++++++..+
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~ 269 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPY---------NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLG 269 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCC---------CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcC
Confidence 112233454 66775 4333222 13456788899876 35689999999976554 56678999999999
Q ss_pred CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHH
Q 041419 309 QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVES 388 (498)
Q Consensus 309 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~ea 388 (498)
.+++|+++.... ....+|+ |+.+.+|+||.++|++++ +||||||+||++||
T Consensus 270 ~~~i~~~g~~~~------------------~~~~~~~---------~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~ea 320 (401)
T cd03784 270 QRAILSLGWGGL------------------GAEDLPD---------NVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAA 320 (401)
T ss_pred CeEEEEccCccc------------------cccCCCC---------ceEEeCCCCHHHHhhhhh--eeeecCCchhHHHH
Confidence 999999865321 0012233 899999999999999988 79999999999999
Q ss_pred HhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 041419 389 IVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQ 464 (498)
Q Consensus 389 l~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~ 464 (498)
+++|||+|++|+..||+.||+++ +++|+|+.++. ..+++++|.++|++++++ .++++++++++.++
T Consensus 321 l~~GvP~v~~P~~~dQ~~~a~~~-~~~G~g~~l~~----~~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~ 386 (401)
T cd03784 321 LRAGVPQLVVPFFGDQPFWAARV-AELGAGPALDP----RELTAERLAAALRRLLDP-----PSRRRAAALLRRIR 386 (401)
T ss_pred HHcCCCEEeeCCCCCcHHHHHHH-HHCCCCCCCCc----ccCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHH
Confidence 99999999999999999999999 69999999863 558999999999999984 35566666666653
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.3e-41 Score=345.70 Aligned_cols=364 Identities=20% Similarity=0.186 Sum_probs=231.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCC-CCCCC--CCchHHHH
Q 041419 13 LASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANIS-SLVNP--DASLGEKI 89 (498)
Q Consensus 13 ~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~ 89 (498)
+.+|+.||++|++.||++|+++ ||+|+|++++.+.+.+.+.|+ .|..++..... +..+. ..+....+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~~G~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAERVEAAGA---------EFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHHHHHHcCC---------EEEecCCcCccccccccccCcchHHHH
Confidence 3689999999999999999999 999999999998877666644 44444321110 01000 01222222
Q ss_pred HHHH---HHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccccccCCC
Q 041419 90 LVLM---HKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFNL 166 (498)
Q Consensus 90 ~~~~---~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 166 (498)
..+. ....+.+.+.++++ +||+||+|.+++++..+|+++|||++.+.+.+... .. .|......
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~--~~--~~~~~~~~-------- 136 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN--EE--FEEMVSPA-------- 136 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc--cc--cccccccc--------
Confidence 2222 22333344444455 89999999988899999999999999875432111 00 00000000
Q ss_pred CCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCcccc---ChH-HHHhhhhccccCCCCCCC-E
Q 041419 167 EKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDL---EPK-TLGSLRDDNLLGRVCKAP-V 241 (498)
Q Consensus 167 ~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l---~~~-~~~~~~~~~~~~r~~~p~-v 241 (498)
.+.+. ......... .......+ .+..... ++-..+...+ ... .+...+..++++++.+|+ +
T Consensus 137 -----~~~~~--~~~~~~~~~--~~~~~~~~-~~~r~~~----gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 202 (392)
T TIGR01426 137 -----GEGSA--EEGAIAERG--LAEYVARL-SALLEEH----GITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSF 202 (392)
T ss_pred -----chhhh--hhhccccch--hHHHHHHH-HHHHHHh----CCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCe
Confidence 00000 000000000 01111111 1111100 0000000000 000 001111112222333454 9
Q ss_pred EEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCC
Q 041419 242 YAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVEN 321 (498)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (498)
+++||+..... +..+|....+++++||||+||+.....+.+.+++++++..+.+++|..+.....
T Consensus 203 ~~~Gp~~~~~~---------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~ 267 (392)
T TIGR01426 203 TFVGPCIGDRK---------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP 267 (392)
T ss_pred EEECCCCCCcc---------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh
Confidence 99999876433 122376666678899999999866666778889999999999999988543210
Q ss_pred CCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEecccc
Q 041419 322 DVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLH 401 (498)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 401 (498)
. ....+| +|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|..
T Consensus 268 --------------~--~~~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 268 --------------A--DLGELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred --------------h--HhccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCc
Confidence 0 011122 2788889999999999998 799999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q 041419 402 AEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQK 465 (498)
Q Consensus 402 ~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~ 465 (498)
.||+.||+++ +++|+|..+.. ..+++++|.++|+++|.| ++|+++++++++.+..
T Consensus 321 ~dq~~~a~~l-~~~g~g~~l~~----~~~~~~~l~~ai~~~l~~----~~~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 321 ADQPMTARRI-AELGLGRHLPP----EEVTAEKLREAVLAVLSD----PRYAERLRKMRAEIRE 375 (392)
T ss_pred ccHHHHHHHH-HHCCCEEEecc----ccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHH
Confidence 9999999999 69999998763 678999999999999998 7899999999999774
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2e-40 Score=349.32 Aligned_cols=406 Identities=27% Similarity=0.361 Sum_probs=249.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCch-
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASL- 85 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~- 85 (498)
+.|++++++|++||++|++.||+.|+++ ||+||++++.......... ..... ...+.....+.....+.++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS-SKSKS-IKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc-cccee-eeeeecChHHhhhhhhhhccchHHH
Confidence 5789999999999999999999999999 9999999998755432221 11100 000111111111100111222111
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHhc----CCCCcEEEeCCCchhHHHHHHHhC-CcEEEEecchHHHHHHHhhhhhhhh
Q 041419 86 ----GEKILVLMHKSLPALRSAISAM----KFRPTALIVDFFGTEAMDVADEFG-LLKYMFIASNAWFLACFIHAPAIDK 156 (498)
Q Consensus 86 ----~~~~~~~~~~~~~~l~~~l~~~----~~~pD~vI~D~~~~~a~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~ 156 (498)
......+...+...+.+....+ ..++|++|+|.+..+...++...+ ++..++.+..+.......+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-- 159 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS-- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--
Confidence 1112233333344444433332 224999999998666767777765 99888887777665444332221
Q ss_pred cccccccCCCC-CcccCCCCCC-CCcccccccccCC--CchhHHHHHHHhhcc----cCCcEEEEcC-ccccChHHHHhh
Q 041419 157 KLLTDEHFNLE-KPMELPGCMP-VRFQDSLELFLHP--NEPIFDFISSIGMKM----SLSDGILVNT-WDDLEPKTLGSL 227 (498)
Q Consensus 157 ~~~~~~~~~~~-~~~~~pg~~~-l~~~~l~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~lv~s-~~~l~~~~~~~~ 227 (498)
.. +....... +.+.+++... +....++...... ............... .....++.++ +..++.....
T Consensus 160 ~~-p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~-- 236 (496)
T KOG1192|consen 160 YV-PSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL-- 236 (496)
T ss_pred cc-CcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc--
Confidence 11 11111000 1111222111 1111111111100 000011111111111 2223445555 6666654332
Q ss_pred hhcccc-CCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCC--cEEEEEccCCC---CCCHHHHHHHH
Q 041419 228 RDDNLL-GRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQ--SVIYVSFGSGG---TLSAKQMTELA 301 (498)
Q Consensus 228 ~~~~~~-~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vV~vs~GS~~---~~~~~~~~~~~ 301 (498)
++ +||..+++++|||+..... ... ...+.+|++..+.. +||||||||+. .++.++..+++
T Consensus 237 ----~~~~~~~~~~v~~IG~l~~~~~--------~~~--~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~ 302 (496)
T KOG1192|consen 237 ----DFEPRPLLPKVIPIGPLHVKDS--------KQK--SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELA 302 (496)
T ss_pred ----CCCCCCCCCCceEECcEEecCc--------ccc--ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHH
Confidence 23 4555677999999998743 111 11455666655544 89999999997 79999999999
Q ss_pred HHHHhc-CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHH-hccCCcceeeec
Q 041419 302 WSLELS-QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEI-LAHPSVGGFLSH 379 (498)
Q Consensus 302 ~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~l-L~~~~~~~~ItH 379 (498)
.++++. +..|+|+++.... ..+++++.++ ..+|+...+|+||.++ |+|+++++||||
T Consensus 303 ~~l~~~~~~~FiW~~~~~~~--------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTH 361 (496)
T KOG1192|consen 303 KALESLQGVTFLWKYRPDDS--------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTH 361 (496)
T ss_pred HHHHhCCCceEEEEecCCcc--------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEEC
Confidence 999999 8889999976421 1133344433 3347888899999999 599999999999
Q ss_pred CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 380 CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 380 gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
||||||+|++++|||||++|+++||+.||++++ +.|.|..+.. .+.+.+.+.+++.+++.+ ++|+++|+++
T Consensus 362 gG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~----~~~~~~~~~~~~~~il~~----~~y~~~~~~l 432 (496)
T KOG1192|consen 362 GGWNSTLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDK----RDLVSEELLEAIKEILEN----EEYKEAAKRL 432 (496)
T ss_pred CcccHHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEeh----hhcCcHHHHHHHHHHHcC----hHHHHHHHHH
Confidence 999999999999999999999999999999995 5555544442 456555599999999998 7789999999
Q ss_pred HHHHH
Q 041419 460 KYGAQ 464 (498)
Q Consensus 460 ~~~~~ 464 (498)
++..+
T Consensus 433 ~~~~~ 437 (496)
T KOG1192|consen 433 SEILR 437 (496)
T ss_pred HHHHH
Confidence 99865
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-38 Score=318.81 Aligned_cols=387 Identities=18% Similarity=0.235 Sum_probs=240.7
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCC-----CCCCC
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANIS-----SLVNP 81 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~ 81 (498)
+|||+++..|+.||++|+++||++|.++ ||+|+|++++.+.+.+.+.+ +.|..++..... +....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~ag---------~~f~~~~~~~~~~~~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAAG---------LAFVAYPIRDSELATEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHHHHHHhC---------cceeeccccCChhhhhhhhhhc
Confidence 5899999999999999999999999999 99999999999888877775 333333322110 11011
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhccccc
Q 041419 82 DASLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTD 161 (498)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (498)
...+.. ...........+.+.+.+. .||+++.|...... .+++..++|++......... .|......
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--- 137 (406)
T COG1819 71 VKSFRR-LLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTP------LPAAGLPL--- 137 (406)
T ss_pred cchhHH-HhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccC------CcccccCc---
Confidence 111111 1222233344555566666 89999988755544 88888999988644332211 11100000
Q ss_pred ccCCCCCcccCCCCCCCCcccccccccCC--CchhH--HHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCC
Q 041419 162 EHFNLEKPMELPGCMPVRFQDSLELFLHP--NEPIF--DFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVC 237 (498)
Q Consensus 162 ~~~~~~~~~~~pg~~~l~~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~ 237 (498)
.. ...-+...++...++...... ..... ....+..........-+.+.+..-....+...+..+..++.
T Consensus 138 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (406)
T COG1819 138 PP------VGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR- 210 (406)
T ss_pred cc------ccccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC-
Confidence 00 000000011111111111110 00000 00000000000000000000000000000111111000011
Q ss_pred CCC-EEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEc
Q 041419 238 KAP-VYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVR 316 (498)
Q Consensus 238 ~p~-v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (498)
.|. ..++||+..... .+...|+. .++++||||+||.... .+.++.+.++++.++.++|..++
T Consensus 211 ~p~~~~~~~~~~~~~~--------------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~ 273 (406)
T COG1819 211 LPFIGPYIGPLLGEAA--------------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLG 273 (406)
T ss_pred CCCCcCcccccccccc--------------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecc
Confidence 233 556777776543 23444433 3467999999999766 88889999999999999999886
Q ss_pred CCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEE
Q 041419 317 PPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMI 396 (498)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v 396 (498)
. .+. ....+|+ |+.+.+|+||.++|++++ +||||||+|||+|||++|||+|
T Consensus 274 ~-~~~-----------------~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~v 324 (406)
T COG1819 274 G-ARD-----------------TLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLV 324 (406)
T ss_pred c-ccc-----------------ccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEE
Confidence 5 210 1355666 899999999999999999 7999999999999999999999
Q ss_pred eccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 041419 397 AWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKS 476 (498)
Q Consensus 397 ~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~ 476 (498)
++|...||+.||.|+ ++.|+|..++. ..++.+.++++|+++|+| ++|+++++++++.+++. +| ...
T Consensus 325 v~P~~~DQ~~nA~rv-e~~G~G~~l~~----~~l~~~~l~~av~~vL~~----~~~~~~~~~~~~~~~~~---~g--~~~ 390 (406)
T COG1819 325 VIPDGADQPLNAERV-EELGAGIALPF----EELTEERLRAAVNEVLAD----DSYRRAAERLAEEFKEE---DG--PAK 390 (406)
T ss_pred EecCCcchhHHHHHH-HHcCCceecCc----ccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHhhhc---cc--HHH
Confidence 999999999999999 79999999874 689999999999999999 88999999999998754 33 454
Q ss_pred HHHHHHH
Q 041419 477 LSQVAKQ 483 (498)
Q Consensus 477 ~~~~~~~ 483 (498)
+.+.+++
T Consensus 391 ~a~~le~ 397 (406)
T COG1819 391 AADLLEE 397 (406)
T ss_pred HHHHHHH
Confidence 5555554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3.3e-25 Score=221.79 Aligned_cols=315 Identities=17% Similarity=0.134 Sum_probs=196.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
.+|+|...|+.||++|.++||++|+++ ||+|.|+++....+ ...++.+ ++.+..++....... . ......
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~e---~~l~~~~----g~~~~~~~~~~l~~~-~-~~~~~~ 71 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGIE---KTIIEKE----NIPYYSISSGKLRRY-F-DLKNIK 71 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCccc---cccCccc----CCcEEEEeccCcCCC-c-hHHHHH
Confidence 469999999999999999999999999 99999999776432 2333332 566666653222111 0 001111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch--hHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccccccCC
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGT--EAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHFN 165 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 165 (498)
....+. ...-....+++++ +||+||..-... .+..+|+.+++|+++.....
T Consensus 72 ~~~~~~-~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------ 124 (352)
T PRK12446 72 DPFLVM-KGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------ 124 (352)
T ss_pred HHHHHH-HHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------------------------
Confidence 112222 2233445667888 999999865333 35689999999998643111
Q ss_pred CCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEEec
Q 041419 166 LEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYAIG 245 (498)
Q Consensus 166 ~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~vG 245 (498)
+||+ ...++.+. .+.+ ..+|++.. .. ++ ..+++++|
T Consensus 125 ------~~g~------------------~nr~~~~~------a~~v-~~~f~~~~----~~------~~---~~k~~~tG 160 (352)
T PRK12446 125 ------TPGL------------------ANKIALRF------ASKI-FVTFEEAA----KH------LP---KEKVIYTG 160 (352)
T ss_pred ------CccH------------------HHHHHHHh------hCEE-EEEccchh----hh------CC---CCCeEEEC
Confidence 1121 01111111 1122 22332211 11 11 12488999
Q ss_pred cCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHH-HHHHHHHHHhcCCcEEEEEcCCCCCCCC
Q 041419 246 PLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQ-MTELAWSLELSQQRFIWVVRPPVENDVS 324 (498)
Q Consensus 246 pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (498)
+...... .. .......+.+.-.+++++|+|..||+.....++ +.+++..+.. +.+++|+++....
T Consensus 161 ~Pvr~~~--------~~-~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~---- 226 (352)
T PRK12446 161 SPVREEV--------LK-GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL---- 226 (352)
T ss_pred CcCCccc--------cc-ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH----
Confidence 6665432 10 111122222222345679999999997655533 3344444432 4788888864311
Q ss_pred CcccccccCCCCCcccccCChhhhhhcCCCceeecCCc-c-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEecccc-
Q 041419 325 GSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWA-P-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLH- 401 (498)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~-p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~- 401 (498)
+ ...... .++.+.+|+ + ..+++.+++ ++|||||.+|++|++++|+|+|++|+.
T Consensus 227 ----------------~----~~~~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~ 282 (352)
T PRK12446 227 ----------------D----DSLQNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSK 282 (352)
T ss_pred ----------------H----HHHhhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCC
Confidence 0 101111 144555777 4 457899999 899999999999999999999999984
Q ss_pred ----ccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC
Q 041419 402 ----AEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 402 ----~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
.||..||+++ ++.|+|..+.. .+++++.|.+++.+++.|+
T Consensus 283 ~~~~~~Q~~Na~~l-~~~g~~~~l~~----~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 283 FASRGDQILNAESF-ERQGYASVLYE----EDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred CCCCchHHHHHHHH-HHCCCEEEcch----hcCCHHHHHHHHHHHHcCH
Confidence 4899999999 58999999862 7789999999999999873
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.5e-22 Score=200.44 Aligned_cols=325 Identities=18% Similarity=0.224 Sum_probs=201.2
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCC-EEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDV-QVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLG 86 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (498)
++|+++..++.||+.|.++|+++|.++ |+ +|.+..+....+. ...+.. ++.+..++....... .......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e~---~l~~~~----~~~~~~I~~~~~~~~-~~~~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLEA---FLVKQY----GIEFELIPSGGLRRK-GSLKLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccccee---eecccc----CceEEEEeccccccc-CcHHHHH
Confidence 578999999999999999999999999 99 5888766653321 222222 566666664433222 1111111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeC--CCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccccccC
Q 041419 87 EKILVLMHKSLPALRSAISAMKFRPTALIVD--FFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHF 164 (498)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D--~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (498)
.. ...-........+++++ +||+||.- +.+..+..+|..+|||+++.- ..
T Consensus 72 ~~--~~~~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE------------------qn------ 123 (357)
T COG0707 72 AP--FKLLKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE------------------QN------ 123 (357)
T ss_pred HH--HHHHHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEe------------------cC------
Confidence 11 22234556778889999 99999984 444456688888999998632 11
Q ss_pred CCCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEEe
Q 041419 165 NLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYAI 244 (498)
Q Consensus 165 ~~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~v 244 (498)
.+||+- ..+..+. ++.+ ..+|+..+.- ++ ..+++.+
T Consensus 124 ------~~~G~a------------------nk~~~~~------a~~V-~~~f~~~~~~----------~~---~~~~~~t 159 (357)
T COG0707 124 ------AVPGLA------------------NKILSKF------AKKV-ASAFPKLEAG----------VK---PENVVVT 159 (357)
T ss_pred ------CCcchh------------------HHHhHHh------hcee-eecccccccc----------CC---CCceEEe
Confidence 123321 0110111 1111 2233321110 00 1138888
Q ss_pred c-cCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHH-HHHHHHHHHhcCCcEEEEEcCCCCCC
Q 041419 245 G-PLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQ-MTELAWSLELSQQRFIWVVRPPVEND 322 (498)
Q Consensus 245 G-pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (498)
| |+..+-. ..+..-...... .++++|+|+.||+....-++ +..+...+.+ +..++++.+...
T Consensus 160 G~Pvr~~~~-----------~~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--- 223 (357)
T COG0707 160 GIPVRPEFE-----------ELPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--- 223 (357)
T ss_pred cCcccHHhh-----------ccchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---
Confidence 8 4543322 111111112111 15679999999986544333 2334444444 567777775431
Q ss_pred CCCcccccccCCCCCcccccCChhhhhhcCCCc-eeecCCccHH-HHhccCCcceeeecCCcchHHHHHhhCCcEEeccc
Q 041419 323 VSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVG-LVVPAWAPQA-EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPL 400 (498)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~~~pq~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 400 (498)
.+.........+ +.+.+|.++. +++..++ ++||++|++|+.|++++|+|+|.+|.
T Consensus 224 ---------------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~ 280 (357)
T COG0707 224 ---------------------LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPY 280 (357)
T ss_pred ---------------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCC
Confidence 123333343334 6777888764 6777777 89999999999999999999999999
Q ss_pred -cc---cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHH
Q 041419 401 -HA---EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAM 457 (498)
Q Consensus 401 -~~---DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~ 457 (498)
.+ ||..||+.+ ++.|.|..++. .++|.+++.+.|.+++.+++-..+|+++++
T Consensus 281 p~~~~~~Q~~NA~~l-~~~gaa~~i~~----~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~ 336 (357)
T COG0707 281 PPGADGHQEYNAKFL-EKAGAALVIRQ----SELTPEKLAELILRLLSNPEKLKAMAENAK 336 (357)
T ss_pred CCCccchHHHHHHHH-HhCCCEEEecc----ccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33 899999999 69999999873 779999999999999997432233333333
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.90 E-value=2.7e-22 Score=199.22 Aligned_cols=303 Identities=19% Similarity=0.235 Sum_probs=184.8
Q ss_pred CeEEEEcCC-CccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchH
Q 041419 8 PHICLLASP-GMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLG 86 (498)
Q Consensus 8 ~~Ill~~~p-~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (498)
|||++...+ +.||+...+.||++| | ||+|+|++.....+.+... +....++....... ....+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQE-NGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHHHhccc----------cCEEEccCceEecc-CCccchH
Confidence 789888888 889999999999999 7 8999999988643332211 12222222111111 1111211
Q ss_pred HHHHH------HHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccc
Q 041419 87 EKILV------LMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLT 160 (498)
Q Consensus 87 ~~~~~------~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (498)
..+.. ........+.+.+++. +||+||+|. .+.+..+|+..|||++.+........ +.. .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------~~~--~--- 132 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------PNF--W--- 132 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------ccC--C---
Confidence 11111 1233344455666666 999999996 44466889999999998764432110 000 0
Q ss_pred cccCCCCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhc--ccCCcEEEEcCccccChHHHHhhhhccccCCCCC
Q 041419 161 DEHFNLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMK--MSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCK 238 (498)
Q Consensus 161 ~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~ 238 (498)
+. ....+..+..+.... .......+.-++. ... +..
T Consensus 133 --------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--------------~~~ 170 (318)
T PF13528_consen 133 --------------------------LP-WDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL--------------PPF 170 (318)
T ss_pred --------------------------cc-hhhhHHHHHHHhhhhccCCcccceecCCcc-ccc--------------ccc
Confidence 00 000011111111111 2222223333333 110 001
Q ss_pred CCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcC-CcEEEEEcC
Q 041419 239 APVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQ-QRFIWVVRP 317 (498)
Q Consensus 239 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~ 317 (498)
..+.++||+..... . ..+ . .+++.|+|++|..... .++++++..+ ..+++. +.
T Consensus 171 ~~~~~~~p~~~~~~--------~--~~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~ 224 (318)
T PF13528_consen 171 FRVPFVGPIIRPEI--------R--ELP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GP 224 (318)
T ss_pred ccccccCchhcccc--------c--ccC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cC
Confidence 23567888876543 1 111 1 1344799999976432 5667777766 455444 43
Q ss_pred CCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCc--cHHHHhccCCcceeeecCCcchHHHHHhhCCcE
Q 041419 318 PVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWA--PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPM 395 (498)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~ 395 (498)
... + ...+|+.+..|. ...++|..++ ++|+|||.||++|++++|+|+
T Consensus 225 ~~~--------------------~---------~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~ 273 (318)
T PF13528_consen 225 NAA--------------------D---------PRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPA 273 (318)
T ss_pred Ccc--------------------c---------ccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCE
Confidence 211 0 113378887765 5668899998 799999999999999999999
Q ss_pred Eeccc--cccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHH
Q 041419 396 IAWPL--HAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKI 442 (498)
Q Consensus 396 v~~P~--~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~v 442 (498)
|++|. ..+|..||+++ +++|+|..+.. .+++++.|++.|+++
T Consensus 274 l~ip~~~~~EQ~~~a~~l-~~~G~~~~~~~----~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 274 LVIPRPGQDEQEYNARKL-EELGLGIVLSQ----EDLTPERLAEFLERL 317 (318)
T ss_pred EEEeCCCCchHHHHHHHH-HHCCCeEEccc----ccCCHHHHHHHHhcC
Confidence 99999 78999999999 79999999863 789999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.87 E-value=2.8e-20 Score=184.73 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=69.3
Q ss_pred ceeecCCcc--HHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc--cchhhHHHHhhhhcceEEeeccCCCCCc
Q 041419 355 GLVVPAWAP--QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA--EQKMNATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 355 ~~~~~~~~p--q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
|+.+.+|.| ..++|+.++ ++|||||++|++|++++|+|+|++|... ||..||+.+ ++.|+|+.++. .++
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~----~~~ 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEY----KEL 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcCh----hhH
Confidence 788878987 457777787 8999999999999999999999999954 899999999 69999999763 333
Q ss_pred CHHHHHHHHHHHhcCCcc
Q 041419 431 TRQEIEMLVRKIMVDKEG 448 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~~~ 448 (498)
++.+++.++++|++|
T Consensus 303 ---~~~~~~~~~~~~~~~ 317 (321)
T TIGR00661 303 ---RLLEAILDIRNMKRY 317 (321)
T ss_pred ---HHHHHHHhccccccc
Confidence 566677777777543
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=5.7e-17 Score=163.71 Aligned_cols=341 Identities=15% Similarity=0.138 Sum_probs=194.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
|+|+|+..+..||...++.|++.|.++ ||+|++++.+.... ....+. .++++..++.....+ .....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~---~~~~~~----~g~~~~~~~~~~~~~-----~~~~~ 68 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGME---ARLVPK----AGIEFHFIPSGGLRR-----KGSLA 68 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchh---hhcccc----CCCcEEEEeccCcCC-----CChHH
Confidence 889999999999999999999999999 99999999865211 111121 155555554322111 11111
Q ss_pred HHHHH--HHHhhHHHHHHHHhcCCCCcEEEeCCC--chhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhccccccc
Q 041419 88 KILVL--MHKSLPALRSAISAMKFRPTALIVDFF--GTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEH 163 (498)
Q Consensus 88 ~~~~~--~~~~~~~l~~~l~~~~~~pD~vI~D~~--~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 163 (498)
.+... .-.....+..++++. +||+|++... .+.+..+++..++|++..... .
T Consensus 69 ~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~--------------------- 124 (357)
T PRK00726 69 NLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A--------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C---------------------
Confidence 11111 122344566677777 9999998852 333456777889999753100 0
Q ss_pred CCCCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEE
Q 041419 164 FNLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYA 243 (498)
Q Consensus 164 ~~~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~ 243 (498)
.++ ....+.. ...+.++..+-..+ . . .+ ..++++
T Consensus 125 --------~~~------------------~~~r~~~------~~~d~ii~~~~~~~-----~---~-----~~-~~~i~v 158 (357)
T PRK00726 125 --------VPG------------------LANKLLA------RFAKKVATAFPGAF-----P---E-----FF-KPKAVV 158 (357)
T ss_pred --------Ccc------------------HHHHHHH------HHhchheECchhhh-----h---c-----cC-CCCEEE
Confidence 000 0011101 11233332221110 0 0 01 345888
Q ss_pred eccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHH-HHHHHHhcCC--cEEEEEcCCCC
Q 041419 244 IGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTE-LAWSLELSQQ--RFIWVVRPPVE 320 (498)
Q Consensus 244 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~ 320 (498)
+|+...... . .....-.++ ...+..++|++..|+. ....... +.+++.+... .++|.++...
T Consensus 159 i~n~v~~~~--------~--~~~~~~~~~-~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~- 223 (357)
T PRK00726 159 TGNPVREEI--------L--ALAAPPARL-AGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGD- 223 (357)
T ss_pred ECCCCChHh--------h--cccchhhhc-cCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCc-
Confidence 886654322 0 000110111 1112344666655543 2222222 3366555433 3445554321
Q ss_pred CCCCCcccccccCCCCCcccccCChhhhhhcC-CCceeecCCc-cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 321 NDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGLVVPAWA-PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~-pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
. +.+.+... +-++.+.+|+ +..++++.++ ++|+|+|.++++||+++|+|+|++
T Consensus 224 -------------------~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~ 278 (357)
T PRK00726 224 -------------------L----EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILV 278 (357)
T ss_pred -------------------H----HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEe
Confidence 1 12222221 1136777888 4568999999 799999999999999999999999
Q ss_pred cc----cccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchH
Q 041419 399 PL----HAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSY 474 (498)
Q Consensus 399 P~----~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 474 (498)
|. .+||..|+..+ .+.|.|..++. ++++++.++++|+++++|++.+.++++++ ++ ..+.++..
T Consensus 279 ~~~~~~~~~~~~~~~~i-~~~~~g~~~~~----~~~~~~~l~~~i~~ll~~~~~~~~~~~~~-------~~-~~~~~~~~ 345 (357)
T PRK00726 279 PLPHAADDHQTANARAL-VDAGAALLIPQ----SDLTPEKLAEKLLELLSDPERLEAMAEAA-------RA-LGKPDAAE 345 (357)
T ss_pred cCCCCCcCcHHHHHHHH-HHCCCEEEEEc----ccCCHHHHHHHHHHHHcCHHHHHHHHHHH-------Hh-cCCcCHHH
Confidence 97 46899999999 58899999874 56789999999999999844323333332 22 23345555
Q ss_pred HHHHHHHHHH
Q 041419 475 KSLSQVAKQC 484 (498)
Q Consensus 475 ~~~~~~~~~~ 484 (498)
+.++.+.+.+
T Consensus 346 ~~~~~~~~~~ 355 (357)
T PRK00726 346 RLADLIEELA 355 (357)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=2.5e-16 Score=158.47 Aligned_cols=325 Identities=17% Similarity=0.168 Sum_probs=187.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEK 88 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (498)
||++...++.||+...+.|++.|.++ ||+|++++...... ....+. .++++..++...... ......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLE---ARLVPK----AGIPLHTIPVGGLRR-----KGSLKK 67 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcch---hhcccc----cCCceEEEEecCcCC-----CChHHH
Confidence 68999999999999999999999999 99999998764211 011111 145555554322211 111111
Q ss_pred HHHH--HHHhhHHHHHHHHhcCCCCcEEEeCC--CchhHHHHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccccccC
Q 041419 89 ILVL--MHKSLPALRSAISAMKFRPTALIVDF--FGTEAMDVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHF 164 (498)
Q Consensus 89 ~~~~--~~~~~~~l~~~l~~~~~~pD~vI~D~--~~~~a~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (498)
+... .......+..++++. +||+|+++. ....+..+|+..|+|++... ...
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~-~~~---------------------- 122 (350)
T cd03785 68 LKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE-QNA---------------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEc-CCC----------------------
Confidence 1111 122344566777887 999999864 23345577888999997521 100
Q ss_pred CCCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEEe
Q 041419 165 NLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYAI 244 (498)
Q Consensus 165 ~~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~v 244 (498)
.++. ... . .....+.+++.+-...+. ++ ..++..+
T Consensus 123 -------~~~~------------------~~~----~--~~~~~~~vi~~s~~~~~~-----------~~---~~~~~~i 157 (350)
T cd03785 123 -------VPGL------------------ANR----L--LARFADRVALSFPETAKY-----------FP---KDKAVVT 157 (350)
T ss_pred -------CccH------------------HHH----H--HHHhhCEEEEcchhhhhc-----------CC---CCcEEEE
Confidence 0000 000 0 112244555443222111 00 2347777
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCCCC
Q 041419 245 GPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSA-KQMTELAWSLELSQQRFIWVVRPPVENDV 323 (498)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (498)
|....... . ..... .+.+...+++++|++..|+...... +.+.+++..+.+.+..+++.++..
T Consensus 158 ~n~v~~~~--------~--~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----- 221 (350)
T cd03785 158 GNPVREEI--------L--ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----- 221 (350)
T ss_pred CCCCchHH--------h--hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-----
Confidence 76543221 0 01111 2233222344566666665532111 122233344433334455555432
Q ss_pred CCcccccccCCCCCcccccCChhhhhhcCCCceeecCCc-cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccc--
Q 041419 324 SGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWA-PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPL-- 400 (498)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~-pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~-- 400 (498)
..+.+.+.. +.. ..++.+.+|+ +..++|..++ ++|+|+|.+|+.||+++|+|+|++|.
T Consensus 222 ---------------~~~~l~~~~-~~~-~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~ 282 (350)
T cd03785 222 ---------------DLEEVKKAY-EEL-GVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPY 282 (350)
T ss_pred ---------------cHHHHHHHH-hcc-CCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCC
Confidence 112121111 111 2478888887 5678898888 69999999999999999999999986
Q ss_pred --cccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHH
Q 041419 401 --HAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRA 456 (498)
Q Consensus 401 --~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a 456 (498)
..+|..|+..+ .+.|.|..++. ...+.+++.++|++++.|++.+..+++++
T Consensus 283 ~~~~~~~~~~~~l-~~~g~g~~v~~----~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (350)
T cd03785 283 AADDHQTANARAL-VKAGAAVLIPQ----EELTPERLAAALLELLSDPERLKAMAEAA 335 (350)
T ss_pred CCCCcHHHhHHHH-HhCCCEEEEec----CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35788999998 47899999863 44689999999999998844333344433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=3.3e-15 Score=150.14 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=70.0
Q ss_pred cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEecccc---ccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHH
Q 041419 363 PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLH---AEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLV 439 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al 439 (498)
+..++|..++ ++|+++|.+++.||+++|+|+|++|.. .+|..|+..+ ++.|.|..++. ++.+.++|.++|
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~----~~~~~~~l~~~i 315 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQ----KELLPEKLLEAL 315 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEec----ccCCHHHHHHHH
Confidence 5678899999 799999988999999999999999873 4678888888 58899988763 567899999999
Q ss_pred HHHhcCCcchHHHHHHH
Q 041419 440 RKIMVDKEGHSSIRVRA 456 (498)
Q Consensus 440 ~~vl~~~~~~~~~~~~a 456 (498)
++++.|++.+.++.+++
T Consensus 316 ~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 316 LKLLLDPANLEAMAEAA 332 (348)
T ss_pred HHHHcCHHHHHHHHHHH
Confidence 99999844333333333
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=1.4e-15 Score=154.35 Aligned_cols=352 Identities=15% Similarity=0.084 Sum_probs=195.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
++|+++..++.||++|. +|+++|+++ |++|.|++.... ...+.+++. .+++..++. .++ . +...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~--~m~~~g~~~-----~~~~~~l~v---~G~-~---~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP--RMAAEGCEV-----LYSMEELSV---MGL-R---EVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH--HHHhCcCcc-----ccChHHhhh---ccH-H---HHHH
Confidence 57999999999999999 999999999 999999986631 112233321 233333321 111 1 1112
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEe-CCCchhHH--HHHHHhCCcEEEEecchHHHHHHHhhhhhhhhcccccccC
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIV-DFFGTEAM--DVADEFGLLKYMFIASNAWFLACFIHAPAIDKKLLTDEHF 164 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~-D~~~~~a~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (498)
.+..+ .........++++. +||+||. |+.++... ..|+.+|||++... . |..+.+.
T Consensus 70 ~~~~~-~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~-----------P~~waw~------ 128 (385)
T TIGR00215 70 RLGRL-LKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-S-----------PQVWAWR------ 128 (385)
T ss_pred HHHHH-HHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-C-----------CcHhhcC------
Confidence 22222 23344677777887 9999984 65333323 38889999998643 1 1111000
Q ss_pred CCCCcccCCCCCCCCcccccccccCCCchhHHHHHHHhhcccCCcEEEEcCccccChHHHHhhhhccccCCCCCCCEEEe
Q 041419 165 NLEKPMELPGCMPVRFQDSLELFLHPNEPIFDFISSIGMKMSLSDGILVNTWDDLEPKTLGSLRDDNLLGRVCKAPVYAI 244 (498)
Q Consensus 165 ~~~~~~~~pg~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~s~~~l~~~~~~~~~~~~~~~r~~~p~v~~v 244 (498)
+ .+++.+. +.. +.+++. ...+.+.+. .. .-++.+|
T Consensus 129 ---------~--------------~~~r~l~----~~~------d~v~~~--~~~e~~~~~---~~-------g~~~~~v 163 (385)
T TIGR00215 129 ---------K--------------WRAKKIE----KAT------DFLLAI--LPFEKAFYQ---KK-------NVPCRFV 163 (385)
T ss_pred ---------c--------------chHHHHH----HHH------hHhhcc--CCCcHHHHH---hc-------CCCEEEE
Confidence 0 0011111 111 111111 122222211 10 2346778
Q ss_pred ccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhc-----CCcEEEEEcCCC
Q 041419 245 GPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELS-----QQRFIWVVRPPV 319 (498)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~ 319 (498)
|....+... .......+..+-+.-.+++++|.+..||....-......+++++... +.++++......
T Consensus 164 GnPv~~~~~-------~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~ 236 (385)
T TIGR00215 164 GHPLLDAIP-------LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK 236 (385)
T ss_pred CCchhhhcc-------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch
Confidence 844332210 00011222222222223556888888887432122333455444432 234444332211
Q ss_pred CCCCCCcccccccCCCCCcccccCChhhhhhcC-CCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 320 ENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
. ...+ +.+..... +..+....+ +..+++..++ ++|+-+|..|+ |++++|+|+|++
T Consensus 237 ~-------------------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 237 R-------------------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVG 292 (385)
T ss_pred h-------------------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEE
Confidence 0 0111 11111111 112322222 3456888888 79999999887 999999999999
Q ss_pred ----cccc---------cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC----cchHHHHHHHHHHHH
Q 041419 399 ----PLHA---------EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK----EGHSSIRVRAMELKY 461 (498)
Q Consensus 399 ----P~~~---------DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~----~~~~~~~~~a~~l~~ 461 (498)
|+.+ +|..|+..++ +.++...+. .+++|++.|.+.+.++|.|+ +++.++++..+++++
T Consensus 293 yk~~pl~~~~~~~~~~~~~~~~~nil~-~~~~~pel~----q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 367 (385)
T TIGR00215 293 YRMKPLTFLIARRLVKTDYISLPNILA-NRLLVPELL----QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQ 367 (385)
T ss_pred EcCCHHHHHHHHHHHcCCeeeccHHhc-CCccchhhc----CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 8842 2788999985 778887765 37799999999999999997 666677777777776
Q ss_pred HHHHhhccCCchHHHHHHHH
Q 041419 462 GAQKATSNSGSSYKSLSQVA 481 (498)
Q Consensus 462 ~~~~a~~~~g~~~~~~~~~~ 481 (498)
+ ..++|.+.+..+.++
T Consensus 368 ~----l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 368 R----IYCNADSERAAQAVL 383 (385)
T ss_pred H----hcCCCHHHHHHHHHh
Confidence 6 456677776665544
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=1e-13 Score=141.21 Aligned_cols=145 Identities=20% Similarity=0.262 Sum_probs=96.3
Q ss_pred CCcEEEEEccCCCCCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCce
Q 041419 278 SQSVIYVSFGSGGTLSAKQMTELAWSLELS-QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGL 356 (498)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 356 (498)
++++|++..|+.... ..+..+++++.+. +.++++..+.... ..+.+ ........ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------------------~~~~l-~~~~~~~~-~~v 258 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------------------LKQSL-EDLQETNP-DAL 258 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------------------HHHHH-HHHHhcCC-CcE
Confidence 456788777876432 2345667777554 4566665542200 00111 01111111 368
Q ss_pred eecCCccHH-HHhccCCcceeeecCCcchHHHHHhhCCcEEec-cccccchhhHHHHhhhhcceEEeeccCCCCCcCHHH
Q 041419 357 VVPAWAPQA-EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW-PLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQE 434 (498)
Q Consensus 357 ~~~~~~pq~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~ 434 (498)
.+.+|+++. +++..++ ++|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|.|+.. .+.++
T Consensus 259 ~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~--------~~~~~ 327 (380)
T PRK13609 259 KVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI--------RDDEE 327 (380)
T ss_pred EEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE--------CCHHH
Confidence 888999874 7898988 699999988899999999999985 6777788899888 578888753 25689
Q ss_pred HHHHHHHHhcCCcchHHHHHH
Q 041419 435 IEMLVRKIMVDKEGHSSIRVR 455 (498)
Q Consensus 435 l~~al~~vl~~~~~~~~~~~~ 455 (498)
+.++|.++++|++.+.+++++
T Consensus 328 l~~~i~~ll~~~~~~~~m~~~ 348 (380)
T PRK13609 328 VFAKTEALLQDDMKLLQMKEA 348 (380)
T ss_pred HHHHHHHHHCCHHHHHHHHHH
Confidence 999999999984433333333
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.58 E-value=1.3e-13 Score=133.71 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=74.9
Q ss_pred cEEEEEccCCCCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC-CCce
Q 041419 280 SVIYVSFGSGGTLSAKQMTELAWSLELS--QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGL 356 (498)
Q Consensus 280 ~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~ 356 (498)
+.|+|+||...... ....++++|++. +.++.++++.... ..+.+.+... .+++
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~----------------------~~~~l~~~~~~~~~i 226 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP----------------------NLDELKKFAKEYPNI 226 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc----------------------CHHHHHHHHHhCCCE
Confidence 46899999654322 344566777654 4566777754311 1122222221 2478
Q ss_pred eecCCccHH-HHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHH
Q 041419 357 VVPAWAPQA-EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATM 410 (498)
Q Consensus 357 ~~~~~~pq~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 410 (498)
.+..++++. ++|..++ ++|++|| +|+.|++++|+|+|++|+..+|..||+.
T Consensus 227 ~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 227 ILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 888999875 8899999 7999999 9999999999999999999999999875
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.58 E-value=1.6e-13 Score=139.78 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=68.7
Q ss_pred HHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc--------cchhh-----HHHHhhhhcceEEeeccCCCCCc
Q 041419 364 QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA--------EQKMN-----ATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 364 q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
-..++..++ ++|+.+|.+++ |++++|+|+|++|... +|..| +..+ .+.+++..+. ....
T Consensus 255 ~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~----~~~~ 326 (380)
T PRK00025 255 KREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELL----QEEA 326 (380)
T ss_pred HHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhc----CCCC
Confidence 467788888 79999998777 9999999999995432 12221 2222 1223332222 1567
Q ss_pred CHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 041419 431 TRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQ 483 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 483 (498)
+++++.+++.+++.|++.+.+++++++++... . ..+++.+.++.+.+.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~----~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQ----L-RCGADERAAQAVLEL 374 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----h-CCCHHHHHHHHHHHH
Confidence 89999999999999966555666666555544 3 345555555554443
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.51 E-value=4.9e-12 Score=120.10 Aligned_cols=337 Identities=18% Similarity=0.180 Sum_probs=191.6
Q ss_pred CCCC--CCCCeEEEEcCC--CccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCC
Q 041419 1 MQST--KLKPHICLLASP--GMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANI 75 (498)
Q Consensus 1 ~~~~--~~~~~Ill~~~p--~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 75 (498)
|.++ ++.+||+|++.= +-||+.....+|++|.+.. |.+|++++... .+...+...+++++.+|....
T Consensus 1 ~~~~~~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~--------~~~~F~~~~gVd~V~LPsl~k 72 (400)
T COG4671 1 MTGHEASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGP--------PAGGFPGPAGVDFVKLPSLIK 72 (400)
T ss_pred CCccchhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCC--------ccCCCCCcccCceEecCceEe
Confidence 4444 345699999986 5599999999999999864 99999999775 233444446999999986321
Q ss_pred -CCCCCCCCchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHH-HH----HH--HhCCcEEEEecchHHHHHH
Q 041419 76 -SSLVNPDASLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAM-DV----AD--EFGLLKYMFIASNAWFLAC 147 (498)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~-~~----A~--~lgiP~v~~~~~~~~~~~~ 147 (498)
++......+.........+.....+...++.+ +||++|+|.+-+... .+ ++ .-+-+++..
T Consensus 73 ~~~G~~~~~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~---------- 140 (400)
T COG4671 73 GDNGEYGLVDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLG---------- 140 (400)
T ss_pred cCCCceeeeecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHHHHHhhcCCcceee----------
Confidence 21101111111123333344445667777888 999999998555421 00 00 011011100
Q ss_pred HhhhhhhhhcccccccCCCCCcccCCCCCCCCcccccccccCC-CchhHHHHHHHhhcccCCcEEEEcC---ccccChHH
Q 041419 148 FIHAPAIDKKLLTDEHFNLEKPMELPGCMPVRFQDSLELFLHP-NEPIFDFISSIGMKMSLSDGILVNT---WDDLEPKT 223 (498)
Q Consensus 148 ~~~~p~~~~~~~~~~~~~~~~~~~~pg~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~s---~~~l~~~~ 223 (498)
..++ ...|+.. .--++ +..+... .++ .+.+.+-. |.++...
T Consensus 141 -------lr~i-----------~D~p~~~---------~~~w~~~~~~~~I-~r~------yD~V~v~GdP~f~d~~~~- 185 (400)
T COG4671 141 -------LRSI-----------RDIPQEL---------EADWRRAETVRLI-NRF------YDLVLVYGDPDFYDPLTE- 185 (400)
T ss_pred -------hHhh-----------hhchhhh---------ccchhhhHHHHHH-HHh------heEEEEecCccccChhhc-
Confidence 0000 0111110 00001 1111111 111 23333322 3332222
Q ss_pred HHhhhhccccCCCCCCCEEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHH
Q 041419 224 LGSLRDDNLLGRVCKAPVYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWS 303 (498)
Q Consensus 224 ~~~~~~~~~~~r~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a 303 (498)
+.+..-.-.++.++|.+..+-. . .+.+.. | .+++--|+||-|.-. ...+.+...+.|
T Consensus 186 -------~~~~~~i~~k~~ytG~vq~~~~--------~-~~~p~~---~---~pE~~~Ilvs~GGG~-dG~eLi~~~l~A 242 (400)
T COG4671 186 -------FPFAPAIRAKMRYTGFVQRSLP--------H-LPLPPH---E---APEGFDILVSVGGGA-DGAELIETALAA 242 (400)
T ss_pred -------CCccHhhhhheeEeEEeeccCc--------C-CCCCCc---C---CCccceEEEecCCCh-hhHHHHHHHHHH
Confidence 1111000234899999943211 0 011100 1 033345888877442 234455555555
Q ss_pred HHh-cC--CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhh-----cCCCceeecCCccH-HHHhccCCcc
Q 041419 304 LEL-SQ--QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTR-----TDKVGLVVPAWAPQ-AEILAHPSVG 374 (498)
Q Consensus 304 l~~-~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~~~pq-~~lL~~~~~~ 374 (498)
-.. .+ .+.+..+++ .+|..-.+. .+.+++.+..|-.+ ..++.-+.
T Consensus 243 ~~~l~~l~~~~~ivtGP------------------------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~-- 296 (400)
T COG4671 243 AQLLAGLNHKWLIVTGP------------------------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR-- 296 (400)
T ss_pred hhhCCCCCcceEEEeCC------------------------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--
Confidence 433 23 324444432 233222221 22467888888654 57777777
Q ss_pred eeeecCCcchHHHHHhhCCcEEeccccc---cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCC
Q 041419 375 GFLSHCGWNSTVESIVNGVPMIAWPLHA---EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~~GvP~v~~P~~~---DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
++|+-||.||++|-|++|+|.+++|... +|-.-|.|+ +++|+--.+.+ ..++++.++++|...++.+
T Consensus 297 ~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~p----e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 297 LVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-EELGLVDVLLP----ENLTPQNLADALKAALARP 366 (400)
T ss_pred eeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-HhcCcceeeCc----ccCChHHHHHHHHhcccCC
Confidence 7999999999999999999999999953 899999999 69999877764 7799999999999999844
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.45 E-value=6.7e-15 Score=131.88 Aligned_cols=137 Identities=23% Similarity=0.234 Sum_probs=94.7
Q ss_pred EEEEEccCCCCCCHH-HHHHHHHHHHh--cCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCcee
Q 041419 281 VIYVSFGSGGTLSAK-QMTELAWSLEL--SQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLV 357 (498)
Q Consensus 281 vV~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 357 (498)
+|+|+.||.....-. .+..+...+.. ...+++|+++.... ......+.. .+.++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~--------------------~~~~~~~~~--~~~~v~ 58 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY--------------------EELKIKVEN--FNPNVK 58 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC--------------------HHHCCCHCC--TTCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH--------------------HHHHHHHhc--cCCcEE
Confidence 489999987532111 12223333333 25788888865411 111111111 014788
Q ss_pred ecCCcc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc----cchhhHHHHhhhhcceEEeeccCCCCCcCH
Q 041419 358 VPAWAP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA----EQKMNATMLTEEIGVAFRSKELPTESLVTR 432 (498)
Q Consensus 358 ~~~~~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~ 432 (498)
+.+|.+ ..+++..++ ++|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+.. ...+.
T Consensus 59 ~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~----~~~~~ 131 (167)
T PF04101_consen 59 VFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE----SELNP 131 (167)
T ss_dssp EECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC----CC-SC
T ss_pred EEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc----ccCCH
Confidence 889999 789999999 7999999999999999999999999988 999999999 58999999873 56778
Q ss_pred HHHHHHHHHHhcCC
Q 041419 433 QEIEMLVRKIMVDK 446 (498)
Q Consensus 433 ~~l~~al~~vl~~~ 446 (498)
+.|.++|.+++.++
T Consensus 132 ~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 132 EELAEAIEELLSDP 145 (167)
T ss_dssp CCHHHHHHCHCCCH
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999999874
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.43 E-value=1.5e-11 Score=125.61 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhc-CC
Q 041419 277 PSQSVIYVSFGSGGTLSAKQMTELAWSLELS--QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRT-DK 353 (498)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~ 353 (498)
+++++|+++.|+... ...+..+++++.+. +.+++++.+... .+-+.+.... ..
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~----------------------~l~~~l~~~~~~~ 255 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK----------------------ELKRSLTAKFKSN 255 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH----------------------HHHHHHHHHhccC
Confidence 345688888888752 13344555554322 345555543220 0101222211 12
Q ss_pred CceeecCCccHH-HHhccCCcceeeecCCcchHHHHHhhCCcEEec-cccccchhhHHHHhhhhcceEEeeccCCCCCcC
Q 041419 354 VGLVVPAWAPQA-EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW-PLHAEQKMNATMLTEEIGVAFRSKELPTESLVT 431 (498)
Q Consensus 354 ~~~~~~~~~pq~-~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~ 431 (498)
+++.+.+|+++. +++..++ ++|+..|..|+.||+++|+|+|++ |..++|..|+..+ ++.|+|+.. . +
T Consensus 256 ~~v~~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~------~--~ 324 (391)
T PRK13608 256 ENVLILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA------D--T 324 (391)
T ss_pred CCeEEEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe------C--C
Confidence 367888898654 7888888 699988888999999999999998 7767778999998 689999774 2 6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHh
Q 041419 432 RQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 432 ~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 486 (498)
.+++.++|.++++|++.+.+ +++.+++. .+..+...-++.+++.+..
T Consensus 325 ~~~l~~~i~~ll~~~~~~~~-------m~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 325 PEEAIKIVASLTNGNEQLTN-------MISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHHHHHHhcCHHHHHH-------HHHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 78899999999988433233 33333332 2334545555555544433
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.36 E-value=9.7e-11 Score=119.35 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=67.5
Q ss_pred CceeecCCccH-HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccch-hhHHHHhhhhcceEEeeccCCCCCcC
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQK-MNATMLTEEIGVAFRSKELPTESLVT 431 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~GvG~~~~~~~~~~~~~ 431 (498)
.++.+.+|+++ .+++..++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+ -+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~--------~~ 333 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS--------ES 333 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec--------CC
Confidence 35777788875 47788888 7999999999999999999999998766675 688888 578998753 36
Q ss_pred HHHHHHHHHHHhcC
Q 041419 432 RQEIEMLVRKIMVD 445 (498)
Q Consensus 432 ~~~l~~al~~vl~~ 445 (498)
++++.++|.+++.|
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 79999999999986
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.34 E-value=4.8e-10 Score=114.22 Aligned_cols=79 Identities=22% Similarity=0.177 Sum_probs=61.1
Q ss_pred eeecCCc-cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhh----cceEEeeccCCCCCc
Q 041419 356 LVVPAWA-PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEI----GVAFRSKELPTESLV 430 (498)
Q Consensus 356 ~~~~~~~-pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~----GvG~~~~~~~~~~~~ 430 (498)
+.+..+. +..+++..++ ++|+-+|..| .|+..+|+|+|++|+-..|. |+... ++. |.+..+. ..
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~------~~ 349 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA------SK 349 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC------CC
Confidence 4443443 4467888888 7999999766 99999999999999877786 88766 453 6666653 24
Q ss_pred CHHHHHHHHHHHhcC
Q 041419 431 TRQEIEMLVRKIMVD 445 (498)
Q Consensus 431 ~~~~l~~al~~vl~~ 445 (498)
+.+.|.+++.+++.|
T Consensus 350 ~~~~l~~~l~~ll~d 364 (396)
T TIGR03492 350 NPEQAAQVVRQLLAD 364 (396)
T ss_pred CHHHHHHHHHHHHcC
Confidence 559999999999998
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=1.3e-12 Score=113.20 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=77.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHH
Q 041419 10 ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKI 89 (498)
Q Consensus 10 Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 89 (498)
|+|++.|+.||++|+++||++|++| ||+|++++++.+.+.+.+. |++|..++.. ..+ +...+....+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~--~~~-~~~~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRERVEAA---------GLEFVPIPGD--SRL-PRSLEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHHHHHHT---------T-EEEESSSC--GGG-GHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccceeccccc---------CceEEEecCC--cCc-Ccccchhhhh
Confidence 7899999999999999999999999 9999999999877665444 7888877643 011 1100111111
Q ss_pred HH------HHHHhhHHHHHHHHhc----C--CCCcEEEeCCCchhHHHHHHHhCCcEEEEecchH
Q 041419 90 LV------LMHKSLPALRSAISAM----K--FRPTALIVDFFGTEAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 90 ~~------~~~~~~~~l~~~l~~~----~--~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~ 142 (498)
.. ........+.....+. . ..+|+++++.....+..+|+++|||++.....+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 68 RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11 1112222222222221 1 2578888888788888999999999998775543
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.22 E-value=2.4e-08 Score=104.58 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=86.1
Q ss_pred EEEEEccCCCCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeec
Q 041419 281 VIYVSFGSGGTLSAKQMTELAWSLELSQ-QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVP 359 (498)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 359 (498)
.+++..|+... ...+..++++++... .+++ .++.. . .-+.+.......++.+.
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G------------------~-----~~~~l~~~~~~~~V~f~ 317 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDG------------------P-----YREELEKMFAGTPTVFT 317 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCC------------------h-----HHHHHHHHhccCCeEEe
Confidence 34455677632 234556777777653 4443 34321 0 11233333334578888
Q ss_pred CCccHH---HHhccCCcceeeecCC----cchHHHHHhhCCcEEeccccccchhhHHHHhhh---hcceEEeeccCCCCC
Q 041419 360 AWAPQA---EILAHPSVGGFLSHCG----WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEE---IGVAFRSKELPTESL 429 (498)
Q Consensus 360 ~~~pq~---~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~---~GvG~~~~~~~~~~~ 429 (498)
+++++. .++..++ ++|.-.. ..++.||+++|+|+|+.... .....+ ++ .+.|..++ .
T Consensus 318 G~v~~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~------~ 384 (465)
T PLN02871 318 GMLQGDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYT------P 384 (465)
T ss_pred ccCCHHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeC------C
Confidence 999765 4677778 4664432 34789999999999987543 233333 34 57787764 2
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
-+.++++++|.++++|++.+.++.+++++.
T Consensus 385 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 414 (465)
T PLN02871 385 GDVDDCVEKLETLLADPELRERMGAAAREE 414 (465)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 367999999999999865445566666553
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=2.8e-08 Score=99.51 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=65.0
Q ss_pred CceeecCCccHHH---HhccCCcceeeecCC----cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLSHCG----WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
.++.+.+|+++.+ ++..++ ++|+++. .+++.||+++|+|+|+.+..+ +...+ +..+.|...+
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~---- 315 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE---- 315 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC----
Confidence 3788889988765 677788 5776654 378999999999999876543 45555 5668887753
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRA 456 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a 456 (498)
.-+.+++.++|.+++.|++.+.++.+++
T Consensus 316 --~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (364)
T cd03814 316 --PGDAEAFAAALAALLADPELRRRMAARA 343 (364)
T ss_pred --CCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3467889999999999854433333333
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.08 E-value=2.1e-07 Score=93.70 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCceeecCCccHHH---HhccCCcceeeecCC---------cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEE
Q 041419 353 KVGLVVPAWAPQAE---ILAHPSVGGFLSHCG---------WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR 420 (498)
Q Consensus 353 ~~~~~~~~~~pq~~---lL~~~~~~~~ItHgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~ 420 (498)
.+++.+.+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceE
Confidence 34788888998654 5677774 553222 234799999999999988765544 33 23367776
Q ss_pred eeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 041419 421 SKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKY 461 (498)
Q Consensus 421 ~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~ 461 (498)
.+ .-+.++++++|.+++.|++.+.++++++++...
T Consensus 347 ~~------~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 347 VP------PGDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred eC------CCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 54 237899999999999885544455555544433
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.06 E-value=1.6e-06 Score=89.38 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=76.1
Q ss_pred CceeecCCccHH---HHhccCCcceeeecCCc------chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeecc
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSHCGW------NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL 424 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItHgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~ 424 (498)
.++.+.+|+|+. +++..+++.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~-- 356 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE-- 356 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC--
Confidence 368888999875 46778886444444332 236899999999999865431 122233 3 6787764
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhcc
Q 041419 425 PTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSLQ 489 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 489 (498)
.-+.++++++|.+++.|++.+..+++++++.. ++.-+....++++++.+.+.+.
T Consensus 357 ----~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 357 ----PESVEALVAAIAALARQALLRPKLGTVAREYA-------ERTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHHHhc
Confidence 24679999999999988544345555555433 2345555666677666665554
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.01 E-value=8.3e-07 Score=88.55 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=58.8
Q ss_pred CceeecCCccHHH---HhccCCcceeee----cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLS----HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~It----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
.++.+.+++++.+ ++..+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+ ++.+.|....
T Consensus 243 ~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~--- 312 (359)
T cd03823 243 PRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFP--- 312 (359)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEEC---
Confidence 4788889997654 5777884 553 2344 479999999999998654 4455566 4555787764
Q ss_pred CCCCcCHHHHHHHHHHHhcCCc
Q 041419 426 TESLVTRQEIEMLVRKIMVDKE 447 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~ 447 (498)
.-+.+++.+++.++++|++
T Consensus 313 ---~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 313 ---PGDAEDLAAALERLIDDPD 331 (359)
T ss_pred ---CCCHHHHHHHHHHHHhChH
Confidence 3468999999999999844
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.96 E-value=9.6e-07 Score=91.02 Aligned_cols=123 Identities=12% Similarity=-0.006 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCc
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDAS 84 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (498)
+++.||++++.+..|+-.-+..+|+.|+++ ||+|++++....... ..... ..++.+..++.... .. .....
T Consensus 1 ~~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~--~~~~~----~~~v~~~~~~~~~~-~~-~~~~~ 71 (415)
T cd03816 1 PKRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPH--DEILS----NPNITIHPLPPPPQ-RL-NKLPF 71 (415)
T ss_pred CCccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCC--HHHhc----CCCEEEEECCCCcc-cc-ccchH
Confidence 356889999998888888889999999999 999999987642111 00011 23677766653220 00 00011
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCC-Cc---h-hHHHHHHHhCCcEEEEe
Q 041419 85 LGEKILVLMHKSLPALRSAISAMKFRPTALIVDF-FG---T-EAMDVADEFGLLKYMFI 138 (498)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~-~~---~-~a~~~A~~lgiP~v~~~ 138 (498)
....+..........+..+++.. +||+|++.. .. . .+..+++..++|++..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~--~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 72 LLFAPLKVLWQFFSLLWLLYKLR--PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 11111122222233334444544 899999753 22 1 13345666899987643
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.95 E-value=1e-06 Score=89.86 Aligned_cols=93 Identities=9% Similarity=0.149 Sum_probs=65.1
Q ss_pred CceeecCCccHHHH---hccCCcceeeecC---C-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQAEI---LAHPSVGGFLSHC---G-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~~l---L~~~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
.++.+.+|+|+.++ +..++ ++++.. | ..++.||+++|+|+|+.... .....+ ++.+.|...+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~---- 351 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVD---- 351 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeC----
Confidence 47888899998654 77777 466432 2 36899999999999987543 344455 5667888764
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.-+.+++.++|.+++.|++.+.++.+++++.
T Consensus 352 --~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 352 --PRDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 2368999999999998854334444444443
No 52
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.95 E-value=3.1e-07 Score=95.01 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=61.2
Q ss_pred HHHhccCCcceeee----cCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHH
Q 041419 365 AEILAHPSVGGFLS----HCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVR 440 (498)
Q Consensus 365 ~~lL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~ 440 (498)
..++..+++ +|+. =+|..++.||+++|+|+|+-|...++......+ .+.|.++.. -+.++++++|.
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~--------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV--------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE--------CCHHHHHHHHH
Confidence 466777784 3442 133346999999999999999988888887776 456766552 25799999999
Q ss_pred HHhcCCcchHHHHHHHHHHH
Q 041419 441 KIMVDKEGHSSIRVRAMELK 460 (498)
Q Consensus 441 ~vl~~~~~~~~~~~~a~~l~ 460 (498)
++++|++.+.++.++++++.
T Consensus 384 ~ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 384 YLLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred HHhcCHHHHHHHHHHHHHHH
Confidence 99998554445555554443
No 53
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=1.2e-07 Score=87.98 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred EEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC-CCceeec
Q 041419 281 VIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGLVVP 359 (498)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~ 359 (498)
-|+|++|.. -+.....+++..|.+.+..+..+++... +-+...+.+.. .+++...
T Consensus 160 ~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~----------------------p~l~~l~k~~~~~~~i~~~ 215 (318)
T COG3980 160 DILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSN----------------------PTLKNLRKRAEKYPNINLY 215 (318)
T ss_pred eEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCC----------------------cchhHHHHHHhhCCCeeeE
Confidence 599999843 2333455788888888877767775321 11122222222 2344443
Q ss_pred CCcc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHH
Q 041419 360 AWAP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEML 438 (498)
Q Consensus 360 ~~~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~a 438 (498)
.... ...++..++ +.|+-||. |+.|++.-|+|.+++|+...|-.-|... +.+|+-..+. -.++.+....-
T Consensus 216 ~~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~-----~~l~~~~~~~~ 286 (318)
T COG3980 216 IDTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLG-----YHLKDLAKDYE 286 (318)
T ss_pred ecchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhcc-----CCCchHHHHHH
Confidence 3333 557888888 78888874 9999999999999999999999999999 6888887754 23777788888
Q ss_pred HHHHhcC
Q 041419 439 VRKIMVD 445 (498)
Q Consensus 439 l~~vl~~ 445 (498)
+.++..|
T Consensus 287 ~~~i~~d 293 (318)
T COG3980 287 ILQIQKD 293 (318)
T ss_pred HHHhhhC
Confidence 8889988
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.94 E-value=2.3e-06 Score=86.51 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=62.1
Q ss_pred ceeecCCccH-HHHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 355 GLVVPAWAPQ-AEILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 355 ~~~~~~~~pq-~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
++.+.++.++ .+++..+++ +|.- |...++.||+++|+|+|+.. ....+..+ ++...|...+ .
T Consensus 254 ~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i-~~~~~G~~~~------~ 320 (371)
T cd04962 254 DVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVV-KHGETGFLVD------V 320 (371)
T ss_pred eEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhh-cCCCceEEcC------C
Confidence 5777777654 567777774 5522 33459999999999999854 34455555 4545676654 2
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
-+.+++.+++.+++.|++.+.++++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378999999999998854334555555554
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.94 E-value=2.1e-06 Score=85.90 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=64.1
Q ss_pred CceeecCCccHHH---HhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+++|+.+ ++..+++ +|.. +...++.||+++|+|+|+... ...+..+ ++.+.|..++.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~--- 328 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP--- 328 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC---
Confidence 4788889998764 5777884 5533 334689999999999998643 4455555 46577877652
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYG 462 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~ 462 (498)
. +. ++.+++.+++++++...++++++++....
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1 22 89999999999854333455554444443
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.92 E-value=2.3e-06 Score=84.98 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=62.4
Q ss_pred CceeecCCcc-HHHHhccCCcceeeecCC----cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 354 VGLVVPAWAP-QAEILAHPSVGGFLSHCG----WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 354 ~~~~~~~~~p-q~~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
.++.+.++.. ..+++..++ ++|.... .+++.||+++|+|+|+-+.. .....+ ++.+.|...+
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~------ 312 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVP------ 312 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEEC------
Confidence 3677666643 357778888 4664432 47899999999999986543 344455 4556777754
Q ss_pred CcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 429 LVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.-+.+++.++|.+++.|++...++.+++++.
T Consensus 313 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 313 PGDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3468999999999998855434444444444
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.91 E-value=2.1e-06 Score=85.31 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=63.0
Q ss_pred CceeecCCccHH---HHhccCCcceeee----cCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLS----HCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
.++.+.+++++. +++..+++ +|. -|..+++.||+++|+|+|+.+. ......+ +..+.|...+
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~---- 324 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP---- 324 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC----
Confidence 478888998754 56777774 553 2456799999999999998765 4455565 4567777764
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRA 456 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a 456 (498)
..+.+++.++|.+++.|++...++.+++
T Consensus 325 --~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 325 --PGDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred --CCCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3468999999999999854323333333
No 58
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.90 E-value=2.4e-06 Score=84.23 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=71.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHH
Q 041419 16 PGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHK 95 (498)
Q Consensus 16 p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (498)
...-|++-|-.+.++|.++ ||+|.+.+-.... ....+..+ ++++..+... +.+....+.....
T Consensus 8 ~~p~hvhfFk~~I~eL~~~-GheV~it~R~~~~---~~~LL~~y----g~~y~~iG~~--------g~~~~~Kl~~~~~- 70 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKR-GHEVLITARDKDE---TEELLDLY----GIDYIVIGKH--------GDSLYGKLLESIE- 70 (335)
T ss_pred CCchHHHHHHHHHHHHHhC-CCEEEEEEeccch---HHHHHHHc----CCCeEEEcCC--------CCCHHHHHHHHHH-
Confidence 3445999999999999999 9999998876532 12334444 7777766532 2333334433333
Q ss_pred hhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 96 SLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 96 ~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
..-.+..+++++ +||++|+-. +..+..+|.-+|+|++.|.
T Consensus 71 R~~~l~~~~~~~--~pDv~is~~-s~~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 71 RQYKLLKLIKKF--KPDVAISFG-SPEAARVAFGLGIPSIVFN 110 (335)
T ss_pred HHHHHHHHHHhh--CCCEEEecC-cHHHHHHHHHhCCCeEEEe
Confidence 344566666777 999999754 5667789999999999876
No 59
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.80 E-value=1.5e-05 Score=81.57 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=63.6
Q ss_pred CCceeecCCccHHH---HhccCCcceeee-cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCC
Q 041419 353 KVGLVVPAWAPQAE---ILAHPSVGGFLS-HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTE 427 (498)
Q Consensus 353 ~~~~~~~~~~pq~~---lL~~~~~~~~It-HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~ 427 (498)
.+++.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|+. |.......+ +.-..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~----- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVD----- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcC-----
Confidence 35788889998765 566777422222 2333 4899999999999986 444555555 4545677654
Q ss_pred CCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 428 SLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 428 ~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
.-+.++++++|.++++|++.+.++.+++++
T Consensus 350 -~~d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 350 -FFDPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred -CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 346899999999999985443444444443
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.79 E-value=2.5e-05 Score=80.22 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=63.8
Q ss_pred CceeecCCccHH---HHhccCCcceeee---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLS---HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+++|+. +++..+++ +|. +.|. .++.||+++|+|+|+... ......+ ++.+.|..++
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~---- 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVD---- 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECC----
Confidence 468888998865 56888884 553 2343 589999999999998654 3344455 4556777754
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
.-+.++++++|.+++.|++.+.++++++++
T Consensus 352 --~~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 352 --GHDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 247899999999999885443445555544
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.78 E-value=9e-06 Score=80.28 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=61.0
Q ss_pred ceeecCCc-cHHHHhccCCcceeeecC----CcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 355 GLVVPAWA-PQAEILAHPSVGGFLSHC----GWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 355 ~~~~~~~~-pq~~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
++.+.++. .-..++..++ ++|... ..+++.||+++|+|+|+.+..+.+. .+.+....|...+ .
T Consensus 236 ~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~------~ 303 (348)
T cd03820 236 RVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVP------N 303 (348)
T ss_pred eEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeC------C
Confidence 56666663 3457777887 455443 2468999999999999876544433 2322323777654 3
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.+.+++.++|.+++.|++.+..++++++++
T Consensus 304 ~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 304 GDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 467999999999999865444555555443
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.77 E-value=2.3e-05 Score=78.77 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=60.7
Q ss_pred ceeecCCcc-HH---HHhccCCcceeeecC----CcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 355 GLVVPAWAP-QA---EILAHPSVGGFLSHC----GWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 355 ~~~~~~~~p-q~---~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
++...+|++ +. .++..++ ++|... ..+++.||+++|+|+|+.... .....+ ++.+.|..++
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~---- 313 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK---- 313 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC----
Confidence 677778988 43 4677787 466643 247999999999999986542 333344 3445676653
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
..+.+++.+++.++++|++...++.+++++
T Consensus 314 --~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 314 --PGDPEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 347899999999999885432344444443
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.74 E-value=5e-06 Score=83.30 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=65.8
Q ss_pred CCceeecCCccHH---HHhccCCcceeee---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 353 KVGLVVPAWAPQA---EILAHPSVGGFLS---HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 353 ~~~~~~~~~~pq~---~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
..++.+.+|+|+. .++..+++.++.+ +.|. .++.||+++|+|+|+....+.+. .+.+..+.|...+
T Consensus 243 ~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~--- 315 (357)
T cd03795 243 LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVVP--- 315 (357)
T ss_pred cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEeC---
Confidence 3589999999975 4666677533322 2344 47999999999999975544443 3311146676653
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELK 460 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~ 460 (498)
.-+.+++.++|.++++|++.+.++++++++..
T Consensus 316 ---~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (357)
T cd03795 316 ---PGDPAALAEAIRRLLEDPELRERLGEAARERA 347 (357)
T ss_pred ---CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 34789999999999998655455555555543
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.70 E-value=2.3e-05 Score=78.39 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=62.5
Q ss_pred CceeecCCccHHH---HhccCCcceeeec---CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLSH---CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+|+++.+ ++..+++ +|.- .| .+++.||+++|+|+|+.+. ......+ .. +.|...+
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~---- 329 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD---- 329 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC----
Confidence 4788889999654 4677775 4432 22 4689999999999999653 3455555 35 7787754
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.+.+++.++|.+++.|++.+.++.+++++.
T Consensus 330 ---~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 330 ---DDVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ---CChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 234999999999999854434555555544
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.65 E-value=4.4e-05 Score=76.05 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=58.0
Q ss_pred CceeecCCccHH---HHhccCCcceee----ecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFL----SHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~I----tHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+.. .....+ +..+.|....
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~---- 327 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP---- 327 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC----
Confidence 478888999875 55667774 44 224457899999999999986543 344455 4656676653
Q ss_pred CCCcCHHHHHHHHHHHhcCC
Q 041419 427 ESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~ 446 (498)
.-+.+++.++|.+++.++
T Consensus 328 --~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 328 --PGDPEALAEAILRLLADP 345 (377)
T ss_pred --CCCHHHHHHHHHHHhcCc
Confidence 357899999999999884
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.61 E-value=6.7e-05 Score=76.50 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=63.8
Q ss_pred CceeecCCccHH---HHhccCCcceeeec---CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSH---CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+++|+. .++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+ ...+.|...+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC----
Confidence 478888999876 45777774 5432 22 25789999999999997443 334445 3545676643
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.+.++++++|.+++.+++.+.++++++++.
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 278999999999999865545666666554
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.59 E-value=7e-05 Score=76.76 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=66.6
Q ss_pred CceeecCCccHH---HHhccCCcceeee---cCCcc-hHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLS---HCGWN-STVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+.+|+|+. .++..+++ +|. +-|.| ++.||+++|+|+|+-...+ ....+ ++ |-+...
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~----- 316 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA----- 316 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-----
Confidence 358888998764 46667774 543 33444 9999999999999976643 23344 33 333332
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhc
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
. .+.+++++++.+++.+..-...+.++++ +.+++.-+-...++++++-....+
T Consensus 317 -~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 317 -E-PDVESIVRKLEEAISILRTGKHDPWSFH-------NRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred -C-CCHHHHHHHHHHHHhChhhhhhHHHHHH-------HHHHhhCCHHHHHHHHHHHHHHHh
Confidence 2 2679999999999986321011222222 223344555555556555554433
No 68
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.58 E-value=1.9e-06 Score=87.26 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=68.1
Q ss_pred CceeecCCccH---HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCc
Q 041419 354 VGLVVPAWAPQ---AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 354 ~~~~~~~~~pq---~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
+++.+.+.+++ ..++..++ ++|+-.|. .+.||+++|+|+|.++..++++. .+ ..|.+..+. .
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~--~~g~~~lv~-------~ 319 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TV--EAGTNKLVG-------T 319 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH---HH--hcCceEEeC-------C
Confidence 36777665554 45667777 68887764 47999999999999976666553 22 346666542 3
Q ss_pred CHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 041419 431 TRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAK 482 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 482 (498)
+.++|.+++++++.| ++.+++. +..... ..+++++.+-++.+.+
T Consensus 320 d~~~i~~ai~~ll~~----~~~~~~~---~~~~~~-~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 320 DKENITKAAKRLLTD----PDEYKKM---SNASNP-YGDGEASERIVEELLN 363 (365)
T ss_pred CHHHHHHHHHHHHhC----hHHHHHh---hhcCCC-CcCchHHHHHHHHHHh
Confidence 679999999999988 3334332 222221 2455666655555443
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.56 E-value=5.2e-05 Score=75.78 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=62.0
Q ss_pred CceeecCCccHH---HHhccCCcceeee--c--------CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEE
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLS--H--------CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR 420 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~It--H--------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~ 420 (498)
+++.+.+++|+. .++..+++ +|. . |.-+++.||+++|+|+|+.+..+ ....+ +....|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEE
Confidence 478888999765 45666775 444 2 23468999999999999876532 22344 45447777
Q ss_pred eeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 421 SKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 421 ~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
.+ .-+.+++.++|.+++.|++...++++++++
T Consensus 309 ~~------~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 309 VP------PGDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred eC------CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 54 237899999999999985433444444443
No 70
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.55 E-value=6.5e-06 Score=83.17 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCcEEEEEccCCCCC-CHHHHHHHHHHHHhcCCc-EEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC--C
Q 041419 278 SQSVIYVSFGSGGTL-SAKQMTELAWSLELSQQR-FIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD--K 353 (498)
Q Consensus 278 ~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~ 353 (498)
++++|++++|..... ..+.+..++++++..... +.+....... + ...+- ....+.. .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---------------~---~~~l~-~~~~~~~~~~ 257 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---------------T---RPRIR-EAGLEFLGHH 257 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---------------h---HHHHH-HHHHhhccCC
Confidence 455788888876443 345677788888765432 4444322110 0 01111 1111121 3
Q ss_pred CceeecCCccHH---HHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCc
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
+++.+.+..++. .++..++ ++|+..| |.+.||+++|+|+|+++.. |. +..+ .+.|++..+. -
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~-------~ 322 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG-------T 322 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC-------C
Confidence 467666554433 5566777 7999999 7888999999999998643 32 3233 2557765532 2
Q ss_pred CHHHHHHHHHHHhcCC
Q 041419 431 TRQEIEMLVRKIMVDK 446 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~ 446 (498)
+.++|.++|.++++++
T Consensus 323 ~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 323 DPEAILAAIEKLLSDE 338 (363)
T ss_pred CHHHHHHHHHHHhcCc
Confidence 5899999999999873
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.51 E-value=0.00013 Score=73.11 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=63.0
Q ss_pred CceeecCCcc-HHHHhccCCcceeee--cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 354 VGLVVPAWAP-QAEILAHPSVGGFLS--HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 354 ~~~~~~~~~p-q~~lL~~~~~~~~It--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
+++.+.+|.+ ...++..+++-++-+ +-|. +++.||+++|+|+|+.-. ......+ ...+.|..++ .
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~------~ 314 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVP------P 314 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeC------C
Confidence 3678878754 357788888533323 2233 599999999999998643 3344454 4545777764 3
Q ss_pred cCHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMV-DKEGHSSIRVRAMELKYG 462 (498)
Q Consensus 430 ~~~~~l~~al~~vl~-~~~~~~~~~~~a~~l~~~ 462 (498)
-+.+++.++|...+. +++.+.+++++|++..+.
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 478999999976664 554445566666655543
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.50 E-value=0.00049 Score=76.70 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=62.8
Q ss_pred CceeecCCccHHHH---hccCC--cceeeec---CCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeecc
Q 041419 354 VGLVVPAWAPQAEI---LAHPS--VGGFLSH---CGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL 424 (498)
Q Consensus 354 ~~~~~~~~~pq~~l---L~~~~--~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~ 424 (498)
+.+.+.+++++.++ +..++ ..+||.- =|+ .++.||+++|+|+|+-...+ ....+ +...-|+.++
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVd-- 620 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVD-- 620 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEEC--
Confidence 36777788887654 33331 1256654 344 48999999999999985432 33333 3445677765
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 425 PTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
.-+.++|+++|.+++.|++.+.++.+++++.
T Consensus 621 ----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 621 ----PHDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred ----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 2478999999999999865545566655544
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.49 E-value=8.6e-05 Score=73.27 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=52.7
Q ss_pred CceeecCCccH-HHHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
+++.+.++.+. .+++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ++.+.|...+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~------ 312 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP------ 312 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC------
Confidence 36777777654 467788884 5432 3346899999999999986443 455566 5667888764
Q ss_pred CcCHHHH---HHHHHHHhcCC
Q 041419 429 LVTRQEI---EMLVRKIMVDK 446 (498)
Q Consensus 429 ~~~~~~l---~~al~~vl~~~ 446 (498)
.-+.+.+ .+++.+.+.++
T Consensus 313 ~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 313 VGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCCHHHHHHHHHHHHhccCCh
Confidence 2456666 55555666553
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.48 E-value=0.00052 Score=71.37 Aligned_cols=92 Identities=11% Similarity=0.128 Sum_probs=60.2
Q ss_pred ceeecCCccHHHH---hccC--CcceeeecC---C-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 355 GLVVPAWAPQAEI---LAHP--SVGGFLSHC---G-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 355 ~~~~~~~~pq~~l---L~~~--~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
++.+.+++++.++ +..+ +..+||... | -.++.||+++|+|+|+.-. ..+...+ ++...|+.++
T Consensus 318 ~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv~--- 389 (439)
T TIGR02472 318 KVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLVD--- 389 (439)
T ss_pred eEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEeC---
Confidence 5777777776654 4433 112577643 4 3599999999999998754 3344454 4545677764
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHH
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAM 457 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~ 457 (498)
.-+.++++++|.++++|++.+.++.++++
T Consensus 390 ---~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 390 ---VLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 24789999999999998543333444443
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.48 E-value=0.00028 Score=70.55 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=58.9
Q ss_pred CceeecC-CccHH---HHhccCCcceeee--c----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeec
Q 041419 354 VGLVVPA-WAPQA---EILAHPSVGGFLS--H----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKE 423 (498)
Q Consensus 354 ~~~~~~~-~~pq~---~lL~~~~~~~~It--H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~ 423 (498)
+++.+.+ |+|+. .++..+++ +|. + |-.+++.||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~- 317 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP- 317 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc-
Confidence 3666654 48764 56677774 542 1 33468999999999999977654 2333 3456677654
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 424 LPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 424 ~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
.-+.+++.++|.++++|++.+.++++++++
T Consensus 318 -----~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~ 347 (366)
T cd03822 318 -----PGDPAALAEAIRRLLADPELAQALRARARE 347 (366)
T ss_pred -----CCCHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 236899999999999984432334443333
No 76
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.43 E-value=0.00015 Score=71.92 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=54.6
Q ss_pred CCceeecCCccHH---HHhccCCcceeee--cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 353 KVGLVVPAWAPQA---EILAHPSVGGFLS--HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 353 ~~~~~~~~~~pq~---~lL~~~~~~~~It--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
.+++.+.+++++. .++..+++-++-+ +-|. .++.||+++|+|+|+... ......+ ++...|...+
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~---- 293 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVD---- 293 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeC----
Confidence 3478898999875 4577777522222 2344 489999999999998754 3344444 3433676653
Q ss_pred CCCcCHHHHHHHHHHHhcC
Q 041419 427 ESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~ 445 (498)
. .+++.++|.+++..
T Consensus 294 -~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 294 -S---VEELAAAVARADRL 308 (335)
T ss_pred -C---HHHHHHHHHHHhcc
Confidence 2 89999999998764
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.42 E-value=0.00031 Score=69.85 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=53.6
Q ss_pred ceeecCCcc-HHHHhccCCcceeeecCC----cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 355 GLVVPAWAP-QAEILAHPSVGGFLSHCG----WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 355 ~~~~~~~~p-q~~lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
++.+.+... ..+++..++ ++|..+. .+++.||+++|+|+|+. |...+...+ ++ .|..++ .
T Consensus 252 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~------~ 316 (365)
T cd03807 252 KVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVP------P 316 (365)
T ss_pred eEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeC------C
Confidence 455545433 357788888 5665443 37999999999999985 444455555 34 555543 2
Q ss_pred cCHHHHHHHHHHHhcCCc
Q 041419 430 VTRQEIEMLVRKIMVDKE 447 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~ 447 (498)
-+.+++.++|.++++|++
T Consensus 317 ~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 GDPEALAEAIEALLADPA 334 (365)
T ss_pred CCHHHHHHHHHHHHhChH
Confidence 368999999999999854
No 78
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=0.0001 Score=73.20 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=65.3
Q ss_pred eeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHH
Q 041419 376 FLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVR 455 (498)
Q Consensus 376 ~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~ 455 (498)
++-+||+| ..|++++|+|+|.=|+..-|.+.++++ ++.|.|+.++ + ++.+.+++...++|++.+.+|.++
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~-----~---~~~l~~~v~~l~~~~~~r~~~~~~ 396 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE-----D---ADLLAKAVELLLADEDKREAYGRA 396 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC-----C---HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34699997 679999999999999999999999999 6999999975 2 688999998888887766677777
Q ss_pred HHHHHHHHH
Q 041419 456 AMELKYGAQ 464 (498)
Q Consensus 456 a~~l~~~~~ 464 (498)
+.++-...+
T Consensus 397 ~~~~v~~~~ 405 (419)
T COG1519 397 GLEFLAQNR 405 (419)
T ss_pred HHHHHHHhh
Confidence 766665533
No 79
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.35 E-value=0.00034 Score=70.48 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=63.6
Q ss_pred CceeecCCccHHH---HhccCCcceeeec----------CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEE
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLSH----------CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR 420 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~ItH----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~ 420 (498)
.++.+.+++|+.+ ++..+++ +|.. |-.+++.||+++|+|+|+-+..+ +...+ ++.+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCeeEE
Confidence 4688889998754 4777774 5432 22468999999999999876543 55555 46677877
Q ss_pred eeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 421 SKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 421 ~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
++ .-+.+++.++|.+++.|++.+.++++++++
T Consensus 318 ~~------~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 318 VP------EGDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EC------CCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 64 347799999999999985432344444433
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.34 E-value=1.3e-05 Score=79.81 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=64.3
Q ss_pred cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEecccc--ccchhhHHHHhh--hhcceEEeec--------cC-CCCC
Q 041419 363 PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLH--AEQKMNATMLTE--EIGVAFRSKE--------LP-TESL 429 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~--~DQ~~na~~v~~--~~GvG~~~~~--------~~-~~~~ 429 (498)
.-.+++..++ +.|+-.|..|+ |++.+|+|||+ ++- .-|+.||+++.+ ..|+.-.+-. .+ ..++
T Consensus 228 ~~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 228 DTHKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred cHHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhccc
Confidence 3357888888 79999999888 99999999999 663 368999999831 4554433310 00 1266
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYG 462 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~ 462 (498)
.|++.|.+++.+ .. ++++++...++++.
T Consensus 304 ~t~~~la~~i~~-~~----~~~~~~~~~~l~~~ 331 (347)
T PRK14089 304 VTVENLLKAYKE-MD----REKFFKKSKELREY 331 (347)
T ss_pred CCHHHHHHHHHH-HH----HHHHHHHHHHHHHH
Confidence 899999999987 21 15666666666666
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.34 E-value=0.0002 Score=71.80 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=55.3
Q ss_pred ceeecCCccH-HHHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 355 GLVVPAWAPQ-AEILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 355 ~~~~~~~~pq-~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
++.+.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+-...+ ....+ +. +.|.... .
T Consensus 250 ~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~------~ 315 (358)
T cd03812 250 KVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL------D 315 (358)
T ss_pred cEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC------C
Confidence 5777676433 577778874 4432 33579999999999999865433 33444 45 5665542 2
Q ss_pred cCHHHHHHHHHHHhcCCcc
Q 041419 430 VTRQEIEMLVRKIMVDKEG 448 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~ 448 (498)
-+.++++++|.++++|++.
T Consensus 316 ~~~~~~a~~i~~l~~~~~~ 334 (358)
T cd03812 316 ESPEIWAEEILKLKSEDRR 334 (358)
T ss_pred CCHHHHHHHHHHHHhCcch
Confidence 3579999999999998654
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.34 E-value=0.00014 Score=73.50 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=60.2
Q ss_pred CceeecCCccH--HH---HhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeecc
Q 041419 354 VGLVVPAWAPQ--AE---ILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL 424 (498)
Q Consensus 354 ~~~~~~~~~pq--~~---lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~ 424 (498)
.++.+.+|+++ .. .+..++ ++|.. |-..++.||+++|+|+|+.-. .......+ ++...|..++
T Consensus 236 ~~v~f~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv~-- 307 (359)
T PRK09922 236 QRIIWHGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELYT-- 307 (359)
T ss_pred CeEEEecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEEC--
Confidence 47888888743 22 334456 45542 224799999999999998741 22222344 4555677764
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCc--chHHHHHHHHHHHH
Q 041419 425 PTESLVTRQEIEMLVRKIMVDKE--GHSSIRVRAMELKY 461 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~~~--~~~~~~~~a~~l~~ 461 (498)
.-+.++++++|.++++|++ .....+++++++..
T Consensus 308 ----~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 308 ----PGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred ----CCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 2488999999999999876 22334444444333
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.26 E-value=0.0015 Score=65.43 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=52.5
Q ss_pred CceeecCCccH-HHHhccCCcceeeecC----CcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLSHC----GWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
+++.+.++..+ .+++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+ ++ .|..+.
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~------ 309 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVP------ 309 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeC------
Confidence 36777776644 577888885 44332 246899999999999974 555566665 45 344332
Q ss_pred CcCHHHHHHHHHHHhcC
Q 041419 429 LVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~~ 445 (498)
.-+.+++++++.+++.+
T Consensus 310 ~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 310 ISDPEALANKIDEILKM 326 (360)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 24788999999999953
No 84
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.21 E-value=0.00064 Score=70.15 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=50.6
Q ss_pred ecCCccHHHHhccCCcceeeecC----CcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHH
Q 041419 358 VPAWAPQAEILAHPSVGGFLSHC----GWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQ 433 (498)
Q Consensus 358 ~~~~~pq~~lL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~ 433 (498)
+.++.+..+++...+ +||.-+ =..++.||+++|+|+|+.-..+ + ..+ .+.+-|... -+.+
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--------~~~~ 351 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--------DDGK 351 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--------CCHH
Confidence 556667777888887 577663 2468999999999999975432 2 333 343444332 2578
Q ss_pred HHHHHHHHHhcCC
Q 041419 434 EIEMLVRKIMVDK 446 (498)
Q Consensus 434 ~l~~al~~vl~~~ 446 (498)
++.+++.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999853
No 85
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.19 E-value=0.01 Score=64.91 Aligned_cols=131 Identities=10% Similarity=0.148 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCC-------------ccCHHHHHHHHHH--------HHhCCCC----EEEEEEcCCCCcc--ccccccc
Q 041419 5 KLKPHICLLASPG-------------MGHLIPVVELGKR--------LVAHHDV----QVTVFVVASHDDA--SNSNVHA 57 (498)
Q Consensus 5 ~~~~~Ill~~~p~-------------~GHv~P~l~LA~~--------L~~r~Gh----~Vt~~~~~~~~~~--~~~~~~~ 57 (498)
+-.|+|+|++.=+ .|+..=.+.||++ |+++ || +|.++|-...... .+..-++
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e 331 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLE 331 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCccccccccccc
Confidence 4458887766543 5666667777776 5788 99 7778885432110 0111122
Q ss_pred CCCCCCCeEEEecCCCCCCC-CCCCCCchHHHHHHHHHHhhHHHHHHH-HhcCCCCcEEEeCCCch--hHHHHHHHhCCc
Q 041419 58 VPNNNNLFNAVTLPLANISS-LVNPDASLGEKILVLMHKSLPALRSAI-SAMKFRPTALIVDFFGT--EAMDVADEFGLL 133 (498)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~pD~vI~D~~~~--~a~~~A~~lgiP 133 (498)
......+.+.+.+|...... .++..-. ...+..++......+...+ .+...+||+|++.+... .|..+++++|||
T Consensus 332 ~~~~~~~~~I~rvp~g~~~~~~~~~~i~-k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP 410 (784)
T TIGR02470 332 KVYGTEHAWILRVPFRTENGIILRNWIS-RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVT 410 (784)
T ss_pred cccCCCceEEEEecCCCCcccccccccC-HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCC
Confidence 33333477777777644321 1022112 2234445555444444433 34345899999987443 345899999999
Q ss_pred EEEE
Q 041419 134 KYMF 137 (498)
Q Consensus 134 ~v~~ 137 (498)
.+..
T Consensus 411 ~v~t 414 (784)
T TIGR02470 411 QCTI 414 (784)
T ss_pred EEEE
Confidence 6643
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.15 E-value=0.0026 Score=63.67 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=49.7
Q ss_pred CCceeecCCccHHH---HhccCCcceeeecC----Cc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeecc
Q 041419 353 KVGLVVPAWAPQAE---ILAHPSVGGFLSHC----GW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL 424 (498)
Q Consensus 353 ~~~~~~~~~~pq~~---lL~~~~~~~~ItHg----G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~ 424 (498)
.+++.+.+++++.+ ++..++ +++-+. |. +++.||+++|+|+|+....+ +...+ +. -|...+.
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecC-
Confidence 35788999998865 455556 344433 33 47999999999999875532 22223 23 2333321
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCc
Q 041419 425 PTESLVTRQEIEMLVRKIMVDKE 447 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~~~ 447 (498)
. +.++++|.++++|++
T Consensus 317 ---~----~~l~~~i~~l~~~~~ 332 (363)
T cd04955 317 ---G----DDLASLLEELEADPE 332 (363)
T ss_pred ---c----hHHHHHHHHHHhCHH
Confidence 1 129999999998843
No 87
>PLN00142 sucrose synthase
Probab=98.10 E-value=0.0038 Score=68.26 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=60.1
Q ss_pred HHHHHHHhCCCCEEE----EEEcCCCCc--ccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHH
Q 041419 26 ELGKRLVAHHDVQVT----VFVVASHDD--ASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPA 99 (498)
Q Consensus 26 ~LA~~L~~r~Gh~Vt----~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (498)
.|+++|+++ ||+|+ ++|--.... ..+..-++..+...+.+.+.+|.....+.++..-. ...+..++......
T Consensus 319 el~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~-ke~l~p~L~~f~~~ 396 (815)
T PLN00142 319 EMLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWIS-RFDVWPYLETFAED 396 (815)
T ss_pred HHHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccC-HHHHHHHHHHHHHH
Confidence 366889999 99774 666421111 00111112233233677777776442222122222 22334444444444
Q ss_pred HHHHH-HhcCCCCcEEEeCCCch--hHHHHHHHhCCcEEEEe
Q 041419 100 LRSAI-SAMKFRPTALIVDFFGT--EAMDVADEFGLLKYMFI 138 (498)
Q Consensus 100 l~~~l-~~~~~~pD~vI~D~~~~--~a~~~A~~lgiP~v~~~ 138 (498)
+...+ ++...+||+|++.+... .|..+++++|||.+...
T Consensus 397 ~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 397 AASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 44333 44444799999997544 34589999999998644
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.07 E-value=0.0012 Score=69.46 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccc-cccchhhHHHHhhhh-----c-----ceEEee-c-cCCCCCcC
Q 041419 365 AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPL-HAEQKMNATMLTEEI-----G-----VAFRSK-E-LPTESLVT 431 (498)
Q Consensus 365 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~~-----G-----vG~~~~-~-~~~~~~~~ 431 (498)
.+++..+++ .+.=+| ..|.|+..+|+|||++=- ..=-+..++++. +. + +|..+- . +.-.++.|
T Consensus 483 ~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 483 YELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred HHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 578888884 555555 468999999999999622 112344566664 31 0 122221 0 10014689
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 041419 432 RQEIEMLVRKIMVDKEGHSSIRVRAMELKYG 462 (498)
Q Consensus 432 ~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~ 462 (498)
+++|.+++ ++|.|++.++++++..+++++.
T Consensus 559 pe~La~~l-~lL~d~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 559 PEEVAAAL-DILKTSQSKEKQKDACRDLYQA 588 (608)
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH
Confidence 99999997 8888876667777777777776
No 89
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.05 E-value=0.0031 Score=63.87 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=66.1
Q ss_pred ceeecCCcc-HHHHhccCCcceee--ec--CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 355 GLVVPAWAP-QAEILAHPSVGGFL--SH--CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 355 ~~~~~~~~p-q~~lL~~~~~~~~I--tH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
++.+.++.. -.+++..+++ +| ++ |-..++.||+++|+|+|+-... .+...+ +.-..|..++ .
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~------~ 322 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVP------P 322 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeC------C
Confidence 445545433 3577888884 55 22 3346999999999999996653 344454 4545677654 2
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQC 484 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 484 (498)
-+.++++++|.+++.|++.+..+.+++++. +.+.-+....++++.+-+
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~-------~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRAR-------AEQQFSINAMVAAYAGLY 370 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHH
Confidence 467999999999998743323333333332 223344444455554433
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.05 E-value=0.016 Score=58.91 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=65.7
Q ss_pred cCCccHH---HHhccCCcceeeec---CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcC
Q 041419 359 PAWAPQA---EILAHPSVGGFLSH---CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVT 431 (498)
Q Consensus 359 ~~~~pq~---~lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~ 431 (498)
.+++++. .++..+++ +|.- -| ..++.||+++|+|+|+... ......+ +..+.|..++..+.+..-.
T Consensus 266 ~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~~~~~~ 338 (388)
T TIGR02149 266 NKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNSDADGF 338 (388)
T ss_pred cCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCCcccch
Confidence 3567654 55777884 5542 23 3577999999999998654 3455555 4556788775311111122
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 041419 432 RQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCE 485 (498)
Q Consensus 432 ~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 485 (498)
.+++.++|.+++.|++-+.++.+++++... +.-+-...++++++-+.
T Consensus 339 ~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~-------~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 339 QAELAKAINILLADPELAKKMGIAGRKRAE-------EEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHH
Confidence 389999999999885433344444444322 23344444555554443
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.02 E-value=0.00042 Score=70.03 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred CcEEEEEccCC---CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC-CC
Q 041419 279 QSVIYVSFGSG---GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KV 354 (498)
Q Consensus 279 ~~vV~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~ 354 (498)
++.|+|++=.. .....+.+.++++++...+..+++.+..... ++ ..+-+.+..... .+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---------------~~---~~i~~~i~~~~~~~~ 262 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---------------GS---RIINEAIEEYVNEHP 262 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------------Cc---hHHHHHHHHHhcCCC
Confidence 45888887543 2344567888999998877666565422100 00 000011111111 24
Q ss_pred ceeecC---CccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcC
Q 041419 355 GLVVPA---WAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVT 431 (498)
Q Consensus 355 ~~~~~~---~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~ 431 (498)
++.+.+ +.....++.+++ ++|+-++.|. .||.+.|+|.|.+- +.+. -+ +.|--+.+ -..+
T Consensus 263 ~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~e---~~--~~g~nvl~------vg~~ 325 (365)
T TIGR03568 263 NFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQK---GR--LRADSVID------VDPD 325 (365)
T ss_pred CEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCch---hh--hhcCeEEE------eCCC
Confidence 677665 455667888888 7998875555 99999999999873 3221 11 22332221 1256
Q ss_pred HHHHHHHHHHHhc
Q 041419 432 RQEIEMLVRKIMV 444 (498)
Q Consensus 432 ~~~l~~al~~vl~ 444 (498)
.++|.+++++++.
T Consensus 326 ~~~I~~a~~~~~~ 338 (365)
T TIGR03568 326 KEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHHHHHHHhC
Confidence 7999999999553
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.00 E-value=0.00067 Score=67.78 Aligned_cols=90 Identities=11% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCceeecCCccHH---HHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 353 KVGLVVPAWAPQA---EILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 353 ~~~~~~~~~~pq~---~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
.+++.+.+++|+. +++..+++ +|.. |..+++.||+++|+|+|+-... .....+ .+. |..+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~--- 319 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFD--- 319 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeC---
Confidence 3478888999876 45667774 3322 3346899999999999985442 222233 232 33332
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHH
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAM 457 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~ 457 (498)
.-+.+++.++|.+++.|++.+.++.++++
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 23789999999999998544344444443
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.97 E-value=3.1e-05 Score=65.12 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=76.8
Q ss_pred EEEEEccCCCCCCH-HH--HHHHHHHHHhcC-CcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCce
Q 041419 281 VIYVSFGSGGTLSA-KQ--MTELAWSLELSQ-QRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGL 356 (498)
Q Consensus 281 vV~vs~GS~~~~~~-~~--~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 356 (498)
.+|||-||....+. .. -.++.+.|.+.| .+.+.+++.... ..++......+..++
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~---------------------~~~d~~~~~~k~~gl 63 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP---------------------FFGDPIDLIRKNGGL 63 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc---------------------CCCCHHHhhcccCCe
Confidence 69999999752111 11 124666677776 467788865421 011112211123333
Q ss_pred e--ecCCccH-HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccc----cccchhhHHHHhhhhcceEEe
Q 041419 357 V--VPAWAPQ-AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPL----HAEQKMNATMLTEEIGVAFRS 421 (498)
Q Consensus 357 ~--~~~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~GvG~~~ 421 (498)
. ..+|-|- .+....++ ++|.|+|+||+.|.|..|+|.|+++- -..|-..|.+++ +.|.=...
T Consensus 64 ~id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 64 TIDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred EEEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 3 3356675 56666677 89999999999999999999999998 357999999995 65765554
No 94
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.95 E-value=0.0027 Score=63.74 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=60.8
Q ss_pred cHHHHhccCCcceeeecCCcchHHHHHhhCCcEEecccc-ccchhhHHHHhhhhcceEEeec--cC-------CCCCcCH
Q 041419 363 PQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLH-AEQKMNATMLTEEIGVAFRSKE--LP-------TESLVTR 432 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~-~DQ~~na~~v~~~~GvG~~~~~--~~-------~~~~~~~ 432 (498)
.-.+++..+++ ++++-| ..|.|+..+|+|||++=-. .=-+..|+++. +... +.++- .+ ..+..|+
T Consensus 253 ~~~~~m~~ad~-al~~SG--TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~Niia~~~v~PEliQ~~~~~ 327 (373)
T PF02684_consen 253 ESYDAMAAADA-ALAASG--TATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKY-ISLPNIIAGREVVPELIQEDATP 327 (373)
T ss_pred chHHHHHhCcc-hhhcCC--HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCE-eechhhhcCCCcchhhhcccCCH
Confidence 45567778874 444443 5789999999999987322 12455666664 3221 11110 11 1367899
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchH
Q 041419 433 QEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSY 474 (498)
Q Consensus 433 ~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 474 (498)
+.|.+++.++|.|++. ++..+...+.+.+..+.+.++.
T Consensus 328 ~~i~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 328 ENIAAELLELLENPEK----RKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred HHHHHHHHHHhcCHHH----HHHHHHHHHHHHHhhhhccCCH
Confidence 9999999999998543 4334444444444344444433
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=97.86 E-value=0.034 Score=56.35 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=50.8
Q ss_pred CceeecC-CccHHHH---hccCCcceeee-c-----CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEee
Q 041419 354 VGLVVPA-WAPQAEI---LAHPSVGGFLS-H-----CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSK 422 (498)
Q Consensus 354 ~~~~~~~-~~pq~~l---L~~~~~~~~It-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~ 422 (498)
.++.+.. |+|+.++ ++.+++ +|. + -| -+++.||+++|+|+|+... ..+...+ ++-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 3555544 7887655 788885 552 1 12 2479999999999999743 3355555 5666788752
Q ss_pred ccCCCCCcCHHHHHHHHHHHh
Q 041419 423 ELPTESLVTRQEIEMLVRKIM 443 (498)
Q Consensus 423 ~~~~~~~~~~~~l~~al~~vl 443 (498)
+.++++++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 3788999998764
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.034 Score=60.62 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred CceeecCCccH-HHHhccCCcceeee---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLS---HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
+++.+.+|.++ ..++..+++ +|. +.|. +++.||+++|+|+|+.... .....+ ++-..|+.++. +
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~----~ 642 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPA----D 642 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCC----C
Confidence 46888888765 466777774 543 5564 6899999999999997543 344445 45446888763 5
Q ss_pred CcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 429 LVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
+.+.+++.+++.+++.+....+.+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 5667788888877775422215566555443
No 97
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.81 E-value=0.0064 Score=63.72 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=44.6
Q ss_pred HHhccCCcceeee---cCCcc-hHHHHHhhCCcEEeccccc--cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHH
Q 041419 366 EILAHPSVGGFLS---HCGWN-STVESIVNGVPMIAWPLHA--EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLV 439 (498)
Q Consensus 366 ~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al 439 (498)
.++..+++ +|. +-|.| +.+||+++|+|.|+.-..+ |.-.+...- ...+-|..++ .-+++++.++|
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~------~~d~~~la~~i 422 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFD------DFNAEDLLRAL 422 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeC------CCCHHHHHHHH
Confidence 56778884 553 33554 8889999999999875422 211111000 1226787764 34789999999
Q ss_pred HHHhc
Q 041419 440 RKIMV 444 (498)
Q Consensus 440 ~~vl~ 444 (498)
.+++.
T Consensus 423 ~~~l~ 427 (466)
T PRK00654 423 RRALE 427 (466)
T ss_pred HHHHH
Confidence 99886
No 98
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.79 E-value=0.0035 Score=64.23 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCceeecCCccH-HHHhccCCcceee--ec--CCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 353 KVGLVVPAWAPQ-AEILAHPSVGGFL--SH--CGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 353 ~~~~~~~~~~pq-~~lL~~~~~~~~I--tH--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
.+++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. . +..|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC----
Confidence 347888888875 466778885 44 22 354 36999999999999987643221 1 2336676642
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
-+.++++++|.+++.|++.+.++.+++++.
T Consensus 347 ---~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 ---ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 468999999999999854334444444443
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.0055 Score=60.46 Aligned_cols=204 Identities=12% Similarity=0.109 Sum_probs=103.4
Q ss_pred EEEec-cCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhc-----CCcEEEE
Q 041419 241 VYAIG-PLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELS-----QQRFIWV 314 (498)
Q Consensus 241 v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~ 314 (498)
+.||| |+..... . ........+-+....+++++.+--||-.+-=...+..+.++..++ +.+|+.-
T Consensus 158 ~~yVGHpl~d~i~--------~-~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp 228 (381)
T COG0763 158 CTYVGHPLADEIP--------L-LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLP 228 (381)
T ss_pred eEEeCChhhhhcc--------c-cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 89999 7764432 0 122344555554445667899999986321111222244443332 4566554
Q ss_pred EcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcC-CCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCC
Q 041419 315 VRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTD-KVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGV 393 (498)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~Gv 393 (498)
+.... .+.+-..+..... ..+..+.+.-- .+.+..+++ ++++ +| .-+.|+.-+|+
T Consensus 229 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD~-al~a-SG-T~tLE~aL~g~ 284 (381)
T COG0763 229 LVNAK--------------------YRRIIEEALKWEVAGLSLILIDGEK-RKAFAAADA-ALAA-SG-TATLEAALAGT 284 (381)
T ss_pred cCcHH--------------------HHHHHHHHhhccccCceEEecCchH-HHHHHHhhH-HHHh-cc-HHHHHHHHhCC
Confidence 42211 1111111111111 11222322111 234566663 3444 33 46789999999
Q ss_pred cEEecccccc--chhhHHHHhhhhc--------ceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 041419 394 PMIAWPLHAE--QKMNATMLTEEIG--------VAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGA 463 (498)
Q Consensus 394 P~v~~P~~~D--Q~~na~~v~~~~G--------vG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~ 463 (498)
|||+.=- .+ -+..+++.. +.. +|..+-+--..+..+++.|++++..++.|++.+.++++...+++..
T Consensus 285 P~Vv~Yk-~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~- 361 (381)
T COG0763 285 PMVVAYK-VKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQY- 361 (381)
T ss_pred CEEEEEe-ccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH-
Confidence 9998611 11 122444442 221 1111100001256889999999999999864445677777777766
Q ss_pred HHhhccCCchHHHHHHHHHH
Q 041419 464 QKATSNSGSSYKSLSQVAKQ 483 (498)
Q Consensus 464 ~~a~~~~g~~~~~~~~~~~~ 483 (498)
++.+.+++...+.+++.
T Consensus 362 ---l~~~~~~e~aA~~vl~~ 378 (381)
T COG0763 362 ---LREDPASEIAAQAVLEL 378 (381)
T ss_pred ---HcCCcHHHHHHHHHHHH
Confidence 44555666666555543
No 100
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.76 E-value=0.00013 Score=72.96 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=75.5
Q ss_pred CCCcEEEEEccCCCCCC-H---HHHHHHHHHHHhc-CCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhc
Q 041419 277 PSQSVIYVSFGSGGTLS-A---KQMTELAWSLELS-QQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRT 351 (498)
Q Consensus 277 ~~~~vV~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 351 (498)
.+++.++|++=...... + ..+.++++++.+. +.+++|.+..... + ...+ .......
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~---------------~---~~~i-~~~l~~~ 238 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR---------------G---SDII-IEKLKKY 238 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH---------------H---HHHH-HHHHTT-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch---------------H---HHHH-HHHhccc
Confidence 56679999985554444 3 4455677777666 6778888753211 0 0111 1111122
Q ss_pred CCCceeecCCc---cHHHHhccCCcceeeecCCcchHH-HHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCC
Q 041419 352 DKVGLVVPAWA---PQAEILAHPSVGGFLSHCGWNSTV-ESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTE 427 (498)
Q Consensus 352 ~~~~~~~~~~~---pq~~lL~~~~~~~~ItHgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~ 427 (498)
+++.+..-+ ....+|.+++ ++|+-.| +++ ||.++|+|.|.+ -|+...=.-+ ..|-.+.+
T Consensus 239 --~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvlv------ 301 (346)
T PF02350_consen 239 --DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVLV------ 301 (346)
T ss_dssp --TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEEE------
T ss_pred --CCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEEe------
Confidence 267766554 5567788888 7999999 555 999999999999 3322222221 23445443
Q ss_pred CCcCHHHHHHHHHHHhcC
Q 041419 428 SLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 428 ~~~~~~~l~~al~~vl~~ 445 (498)
+ .+.++|.+++++++.+
T Consensus 302 ~-~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 302 G-TDPEAIIQAIEKALSD 318 (346)
T ss_dssp T-SSHHHHHHHHHHHHH-
T ss_pred C-CCHHHHHHHHHHHHhC
Confidence 2 6889999999999986
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.70 E-value=0.014 Score=59.21 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=55.8
Q ss_pred ceeecCCc--cHH---HHhccCCcceeeecC---Cc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 355 GLVVPAWA--PQA---EILAHPSVGGFLSHC---GW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 355 ~~~~~~~~--pq~---~lL~~~~~~~~ItHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
++.+.++. ++. .+++.++ +|+.-. |. .++.||+++|+|+|+.... .....+ +....|...+
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~--- 322 (372)
T cd03792 253 DIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD--- 322 (372)
T ss_pred CeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC---
Confidence 56665665 332 5667777 466433 33 4999999999999986543 233344 4545666542
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
+.+.++.+|.+++.|++.+.++.+++++
T Consensus 323 -----~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 -----TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred -----CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3467788999999885443444455444
No 102
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.68 E-value=0.00091 Score=68.80 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=72.6
Q ss_pred CCceeecCCccHHH---HhccCCcceeeecCC----cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 353 KVGLVVPAWAPQAE---ILAHPSVGGFLSHCG----WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 353 ~~~~~~~~~~pq~~---lL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
+.++.+.+|+++.+ ++..+++.+||...- -.+++||+++|+|+|+-. -......+ ++.+.|..++
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~--- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLS--- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeC---
Confidence 34688889999765 444433336765543 358999999999999854 34455565 4545787764
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVA 481 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 481 (498)
..-+.++++++|.+++.|++.+.+++++|++.- .+.-+.....++|+
T Consensus 360 --~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~-------~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 --KDPTPNELVSSLSKFIDNEEEYQTMREKAREKW-------EENFNASKNYREFA 406 (407)
T ss_pred --CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHHcCHHHhHHHhc
Confidence 345789999999999998554344555544443 33445445544443
No 103
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.56 E-value=0.16 Score=54.65 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=50.8
Q ss_pred eeecCCccHH-HHhccCCcceeeec---CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCc
Q 041419 356 LVVPAWAPQA-EILAHPSVGGFLSH---CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 356 ~~~~~~~pq~-~lL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
+.+.++.++. +++..++ +||.- =| ..++.||+++|+|+|+.-..+... + .. |.+..+. -
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~-------~ 666 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY-------K 666 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec-------C
Confidence 5555676654 4788888 46653 23 368999999999999986654221 2 22 3232221 2
Q ss_pred CHHHHHHHHHHHhcCCc
Q 041419 431 TRQEIEMLVRKIMVDKE 447 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~~ 447 (498)
+.+++.++|.++|.+++
T Consensus 667 D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 TSEDFVAKVKEALANEP 683 (794)
T ss_pred CHHHHHHHHHHHHhCch
Confidence 57999999999998753
No 104
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.015 Score=57.63 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=58.3
Q ss_pred CCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHH
Q 041419 360 AWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLV 439 (498)
Q Consensus 360 ~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al 439 (498)
+|.+...++.++. +++|-.| |-.-||-..|+|.+++=...+||. .+ +.|.-+.+ ..+.+.|.+++
T Consensus 271 ~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v--~agt~~lv-------g~~~~~i~~~~ 335 (383)
T COG0381 271 GYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV--EAGTNILV-------GTDEENILDAA 335 (383)
T ss_pred chHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce--ecCceEEe-------CccHHHHHHHH
Confidence 5788999999998 7999887 567799999999999998889986 33 34655553 35779999999
Q ss_pred HHHhcC
Q 041419 440 RKIMVD 445 (498)
Q Consensus 440 ~~vl~~ 445 (498)
.+++++
T Consensus 336 ~~ll~~ 341 (383)
T COG0381 336 TELLED 341 (383)
T ss_pred HHHhhC
Confidence 999998
No 105
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.47 E-value=0.0011 Score=58.94 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=65.1
Q ss_pred ceeecCCcc---HHHHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCC
Q 041419 355 GLVVPAWAP---QAEILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTE 427 (498)
Q Consensus 355 ~~~~~~~~p---q~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~ 427 (498)
++.+.++.+ ..+++..++ ++|+. |...++.||+++|+|+|+. |...+...+ .....|..++
T Consensus 74 ~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~----- 141 (172)
T PF00534_consen 74 NIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFD----- 141 (172)
T ss_dssp TEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEES-----
T ss_pred cccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceee-ccccceEEeC-----
Confidence 677778887 346777777 56665 5567999999999999975 455566666 5666788875
Q ss_pred CCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 428 SLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 428 ~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
..+.+++.++|.+++.+++.+..+++++++
T Consensus 142 -~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 142 -PNDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 239999999999999985554555555554
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0023 Score=53.13 Aligned_cols=110 Identities=19% Similarity=0.124 Sum_probs=68.7
Q ss_pred EEEEccCCCCCCHHHHHH--HHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeec
Q 041419 282 IYVSFGSGGTLSAKQMTE--LAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVP 359 (498)
Q Consensus 282 V~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 359 (498)
++||-||....-...+.. +.+-.+....++|.+++... ..| +.+-.++-.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d----------------------~kp------vagl~v~~F 53 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD----------------------IKP------VAGLRVYGF 53 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC----------------------ccc------ccccEEEee
Confidence 789999983211111221 33333445678899996531 112 111012222
Q ss_pred CCccH-HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccc--------cchhhHHHHhhhhcceEEee
Q 041419 360 AWAPQ-AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA--------EQKMNATMLTEEIGVAFRSK 422 (498)
Q Consensus 360 ~~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~GvG~~~~ 422 (498)
++.+- ..+...++ ++|+|+|.||+..++..++|.|++|-.. .|-..|..++ +.+.=+...
T Consensus 54 ~~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 54 DKEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred chHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 44444 44444455 8999999999999999999999999843 5888888885 667666543
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.36 E-value=0.1 Score=54.81 Aligned_cols=77 Identities=13% Similarity=-0.002 Sum_probs=49.4
Q ss_pred ceeecCCccHH---HHhccCCcceeeec---CCcc-hHHHHHhhCCcEEeccccccchhhHHHHhhhh------cceEEe
Q 041419 355 GLVVPAWAPQA---EILAHPSVGGFLSH---CGWN-STVESIVNGVPMIAWPLHAEQKMNATMLTEEI------GVAFRS 421 (498)
Q Consensus 355 ~~~~~~~~pq~---~lL~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------GvG~~~ 421 (498)
++.+....+.. .++..++ ++|.- -|.| +.+||+++|+|.|+-...+ ....+ +.. +.|..+
T Consensus 347 ~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 347 NVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF 419 (473)
T ss_pred cEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe
Confidence 45443434443 4677777 45532 2444 7889999999999865532 22222 232 678776
Q ss_pred eccCCCCCcCHHHHHHHHHHHhc
Q 041419 422 KELPTESLVTRQEIEMLVRKIMV 444 (498)
Q Consensus 422 ~~~~~~~~~~~~~l~~al~~vl~ 444 (498)
+ .-+++++.++|.+++.
T Consensus 420 ~------~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 420 E------EYDPGALLAALSRALR 436 (473)
T ss_pred C------CCCHHHHHHHHHHHHH
Confidence 4 3578999999999886
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.34 E-value=0.0026 Score=65.24 Aligned_cols=145 Identities=20% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhh-hcCCCc
Q 041419 277 PSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLT-RTDKVG 355 (498)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~ 355 (498)
++..++|.+|......+++.+..-.+.|++.+...+|....+.. + ...+-..+.. .++.+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~---------------~---~~~l~~~~~~~Gv~~~R 343 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS---------------G---EARLRRRFAAHGVDPDR 343 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT---------------H---HHHHHHHHHHTTS-GGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH---------------H---HHHHHHHHHHcCCChhh
Confidence 45569999999988889999999999999999999998865421 0 0111111111 122235
Q ss_pred eeecCCccHHHHh---ccCCcceee---ecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 356 LVVPAWAPQAEIL---AHPSVGGFL---SHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 356 ~~~~~~~pq~~lL---~~~~~~~~I---tHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
+.+.++.|+.+-| ..+++ ++ ..+|.+|++|||..|||+|.+|--.=.-..++-+-..+|+.-.+.
T Consensus 344 i~f~~~~~~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA------- 414 (468)
T PF13844_consen 344 IIFSPVAPREEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA------- 414 (468)
T ss_dssp EEEEE---HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB--------
T ss_pred EEEcCCCCHHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC-------
Confidence 6676777765544 34553 33 457889999999999999999974433333333325667665432
Q ss_pred cCHHHHHHHHHHHhcCCcc
Q 041419 430 VTRQEIEMLVRKIMVDKEG 448 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~ 448 (498)
.+.++-.+..-++-+|++.
T Consensus 415 ~s~~eYv~~Av~La~D~~~ 433 (468)
T PF13844_consen 415 DSEEEYVEIAVRLATDPER 433 (468)
T ss_dssp SSHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHhCCHHH
Confidence 2456654444466677443
No 109
>PLN02316 synthase/transferase
Probab=97.23 E-value=0.59 Score=52.98 Aligned_cols=106 Identities=6% Similarity=-0.079 Sum_probs=63.4
Q ss_pred HHhccCCcceeeec---CCc-chHHHHHhhCCcEEeccccc--cchhhH----HH--HhhhhcceEEeeccCCCCCcCHH
Q 041419 366 EILAHPSVGGFLSH---CGW-NSTVESIVNGVPMIAWPLHA--EQKMNA----TM--LTEEIGVAFRSKELPTESLVTRQ 433 (498)
Q Consensus 366 ~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na----~~--v~~~~GvG~~~~~~~~~~~~~~~ 433 (498)
.+++.++ +|+.- =|. .+.+||+++|+|.|+--..+ |.-... .+ ....-+-|+..+ ..+++
T Consensus 915 ~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~------~~d~~ 986 (1036)
T PLN02316 915 LIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD------GADAA 986 (1036)
T ss_pred HHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC------CCCHH
Confidence 4677777 56643 233 48999999999999865532 221111 00 000124577754 45789
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 041419 434 EIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCE 485 (498)
Q Consensus 434 ~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 485 (498)
.|..+|.+++.+ +....+.+++..++++...-+-...++++++-.+
T Consensus 987 aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 987 GVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred HHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 999999999975 3344444566666655555565556666554443
No 110
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.20 E-value=0.013 Score=60.22 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=71.0
Q ss_pred CceeecCCccHHH---HhccCCcceeeec---------CCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEE
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLSH---------CGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR 420 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~ItH---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~ 420 (498)
+++.+.+|+|+.+ ++..+++ +|.- -|. .+++||+++|+|+|+.... .....+ ++-..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEE
Confidence 4788889999864 5667774 5542 344 5689999999999997543 344445 45457777
Q ss_pred eeccCCCCCcCHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 041419 421 SKELPTESLVTRQEIEMLVRKIMV-DKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQC 484 (498)
Q Consensus 421 ~~~~~~~~~~~~~~l~~al~~vl~-~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 484 (498)
++ .-+.++++++|.+++. |++.+.++.+++++..+ +.-+.....+++.+-+
T Consensus 352 v~------~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~-------~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 352 VP------ENDAQALAQRLAAFSQLDTDELAPVVKRAREKVE-------TDFNQQVINRELASLL 403 (406)
T ss_pred eC------CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHH
Confidence 64 2478999999999998 85433444444443322 2344444445554433
No 111
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.18 E-value=0.095 Score=54.12 Aligned_cols=79 Identities=20% Similarity=0.090 Sum_probs=52.5
Q ss_pred CceeecCCccHH---HHhccCCcceeeec---CCc-chHHHHHhhCCcEEeccccccchhhHHHHhh---hhcceEEeec
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSH---CGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTE---EIGVAFRSKE 423 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~GvG~~~~~ 423 (498)
+++.+.+++|+. .+|..++ ++|+- -|. .++.||+++|+|.|+.-..+. ....+ + .-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv-~~~~~g~~G~l~-- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIV-VPWDGGPTGFLA-- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chhee-eccCCCCceEEe--
Confidence 478888888876 4666777 44432 122 488999999999998643321 11122 2 33466652
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCC
Q 041419 424 LPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 424 ~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
. +.++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 2 7899999999999864
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.14 E-value=0.022 Score=57.92 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=69.6
Q ss_pred CceeecCCccHH---HHhccCCcceeeec----CCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSH----CGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItH----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
.++.+.+++|+. +++..+++ +|.. .|. .++.||+++|+|+|+.... .+...+ ++...|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~--- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLA--- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEe---
Confidence 367777898865 45778884 5542 343 5778999999999997552 344444 4545676543
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHh
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 486 (498)
...+.++++++|.+++.|++. .++.+++++. ..+.-+-...++++.+.+.+
T Consensus 327 --~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~-------~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPEL-TQIAEQAKDF-------VFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHH
Confidence 335789999999999998432 2333333322 22334444555555555443
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.01 E-value=0.39 Score=50.32 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHhccCCcceeeec---CCc-chHHHHHhhCCcEEeccccc--cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHH
Q 041419 366 EILAHPSVGGFLSH---CGW-NSTVESIVNGVPMIAWPLHA--EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLV 439 (498)
Q Consensus 366 ~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al 439 (498)
.++..+++ ++.- -|. .+.+||+++|+|.|+....+ |.-.+...- .+-|.|..++ .-+.+++.++|
T Consensus 366 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~------~~~~~~l~~~i 436 (476)
T cd03791 366 LIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE------GYNADALLAAL 436 (476)
T ss_pred HHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC------CCCHHHHHHHH
Confidence 46677774 5532 233 37789999999999875532 211111110 1234787764 34689999999
Q ss_pred HHHhcC
Q 041419 440 RKIMVD 445 (498)
Q Consensus 440 ~~vl~~ 445 (498)
++++..
T Consensus 437 ~~~l~~ 442 (476)
T cd03791 437 RRALAL 442 (476)
T ss_pred HHHHHH
Confidence 998863
No 114
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.94 E-value=0.0065 Score=60.92 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=83.7
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCceeecCCc
Q 041419 283 YVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGLVVPAWA 362 (498)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 362 (498)
++..|+... .+.+..++++++..+.++++.- .... . +.+.+ ...+++.+.+++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG-~g~~-------------------~----~~l~~-~~~~~V~~~g~~ 250 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIG-DGPE-------------------L----DRLRA-KAGPNVTFLGRV 250 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEE-CChh-------------------H----HHHHh-hcCCCEEEecCC
Confidence 344576642 2446667788887776654432 2100 0 12222 223489999999
Q ss_pred cHH---HHhccCCcceeeecCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHH
Q 041419 363 PQA---EILAHPSVGGFLSHCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEML 438 (498)
Q Consensus 363 pq~---~lL~~~~~~~~ItHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~a 438 (498)
|+. +++..+++-++-+.-|. .++.||+++|+|+|+....+ ....+ ++.+.|..++ .-+.++++++
T Consensus 251 ~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~------~~~~~~la~~ 319 (351)
T cd03804 251 SDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE------EQTVESLAAA 319 (351)
T ss_pred CHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC------CCCHHHHHHH
Confidence 985 56778885332233444 36789999999999986533 33344 4556787764 2367889999
Q ss_pred HHHHhcCC-cchHHHHHHHH
Q 041419 439 VRKIMVDK-EGHSSIRVRAM 457 (498)
Q Consensus 439 l~~vl~~~-~~~~~~~~~a~ 457 (498)
|.++++|+ +.+..++++++
T Consensus 320 i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 320 VERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred HHHHHhCcccCHHHHHHHHH
Confidence 99999985 22244444443
No 115
>PLN02949 transferase, transferring glycosyl groups
Probab=96.88 E-value=0.75 Score=48.08 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=66.4
Q ss_pred CceeecCCccHHH---HhccCCcceeee---cCCcc-hHHHHHhhCCcEEeccccccchhhHHHHhh-hhc-ceEEeecc
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFLS---HCGWN-STVESIVNGVPMIAWPLHAEQKMNATMLTE-EIG-VAFRSKEL 424 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G-vG~~~~~~ 424 (498)
+++.+.+++|+.+ +|..++ ++|+ +-|.| ++.||+++|+|.|+....+--. ..+.+ ..| .|...
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~--- 406 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA--- 406 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC---
Confidence 4688889987654 566777 4553 23444 7999999999999986533110 11101 112 23331
Q ss_pred CCCCCcCHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhcc
Q 041419 425 PTESLVTRQEIEMLVRKIMVD-KEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSLQ 489 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~-~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 489 (498)
. +.++++++|.+++.+ ++.+.++.+++++.. + .-+.....+++.+.+...+.
T Consensus 407 ---~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-------~-~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRMRETERLEIAAAARKRA-------N-RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred ---C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------H-HcCHHHHHHHHHHHHHHHHh
Confidence 2 789999999999984 222234444444322 1 24545555556555554443
No 116
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.65 E-value=0.0089 Score=50.75 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=48.1
Q ss_pred CceeecCCccH-HHHhccCCcceeeec--CC-cchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLSH--CG-WNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~ItH--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
+++.+.+|++. .+++..+++.+..+. -| .+++.|++++|+|+|+.+.. ....+ +..+.|..+.
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~~------- 119 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLVA------- 119 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T-------
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEEC-------
Confidence 37888888864 467888887555442 23 48999999999999998661 22233 3457776642
Q ss_pred cCHHHHHHHHHHHhcC
Q 041419 430 VTRQEIEMLVRKIMVD 445 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~ 445 (498)
-+.+++.++|+++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3789999999999865
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.28 E-value=0.044 Score=55.33 Aligned_cols=98 Identities=11% Similarity=0.118 Sum_probs=65.5
Q ss_pred ceeecCCccH-HHHhccCCcceeeec--CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcC
Q 041419 355 GLVVPAWAPQ-AEILAHPSVGGFLSH--CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVT 431 (498)
Q Consensus 355 ~~~~~~~~pq-~~lL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~ 431 (498)
++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +....|..++ .-+
T Consensus 262 ~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~------~~d 331 (372)
T cd04949 262 YVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVP------KGD 331 (372)
T ss_pred eEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeC------CCc
Confidence 5667666554 467788885344444 23458999999999999964432 133344 4556777764 357
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 041419 432 RQEIEMLVRKIMVDKEGHSSIRVRAMELKYG 462 (498)
Q Consensus 432 ~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~ 462 (498)
.++++++|.+++.|++...++.+++++..+.
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 362 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYENAER 362 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 8999999999999865445666666655433
No 118
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.24 E-value=0.44 Score=43.52 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=24.6
Q ss_pred CccCHHHHHHHHHHHHhCCCCEEEEEE
Q 041419 17 GMGHLIPVVELGKRLVAHHDVQVTVFV 43 (498)
Q Consensus 17 ~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 43 (498)
..|+-.....|++.|.++ ||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~-g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARR-GHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHc-CCeEEEEE
Confidence 669999999999999999 99999988
No 119
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.20 E-value=0.022 Score=56.88 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=74.7
Q ss_pred ceeecCCccHHHHhcc--CCcceeeecC-------Cc------chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceE
Q 041419 355 GLVVPAWAPQAEILAH--PSVGGFLSHC-------GW------NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAF 419 (498)
Q Consensus 355 ~~~~~~~~pq~~lL~~--~~~~~~ItHg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~ 419 (498)
++.+.+|+|+.++..+ .+.+++...- .. +-+.+.+++|+|+|+. ++...+..| ++.++|+
T Consensus 208 ~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~G~ 282 (333)
T PRK09814 208 NISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGLGF 282 (333)
T ss_pred CeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCceE
Confidence 7888899998876432 1333332211 11 1277789999999985 556777787 6889999
Q ss_pred EeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 041419 420 RSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAK 482 (498)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 482 (498)
.++ +.+++.+++.++ .++++ .+|++|++++++.++ .|.-....+++++.
T Consensus 283 ~v~--------~~~el~~~l~~~-~~~~~-~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~ 331 (333)
T PRK09814 283 VVD--------SLEELPEIIDNI-TEEEY-QEMVENVKKISKLLR----NGYFTKKALVDAIK 331 (333)
T ss_pred EeC--------CHHHHHHHHHhc-CHHHH-HHHHHHHHHHHHHHh----cchhHHHHHHHHHh
Confidence 963 457899999885 34455 789999999999854 45555555555443
No 120
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.08 E-value=1.5 Score=42.34 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=76.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHH
Q 041419 13 LASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVL 92 (498)
Q Consensus 13 ~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (498)
+=.+..-|+.-|-.|-+.|+++ ||+|.+-+-+... ....+..+ ++.+..+.... +..+...+...
T Consensus 5 iDI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~---v~~LLd~y----gf~~~~Igk~g-------~~tl~~Kl~~~ 69 (346)
T COG1817 5 IDIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV---VTELLDLY----GFPYKSIGKHG-------GVTLKEKLLES 69 (346)
T ss_pred EEcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc---HHHHHHHh----CCCeEeecccC-------CccHHHHHHHH
Confidence 3445667999999999999999 9999887755422 23344545 67666665322 23333333333
Q ss_pred HHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEecch
Q 041419 93 MHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~ 141 (498)
......+.+++.++ +||+.|. -.+..+..+|-.+|+|.+.+.-+.
T Consensus 70 -~eR~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 70 -AERVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -HHHHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 23355788888888 9999999 557788899999999999876443
No 121
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.95 E-value=0.31 Score=51.26 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=62.2
Q ss_pred CceeecCCccHHHHhccCCcceeeec----CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhh-----c-ceEEeec
Q 041419 354 VGLVVPAWAPQAEILAHPSVGGFLSH----CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEI-----G-VAFRSKE 423 (498)
Q Consensus 354 ~~~~~~~~~pq~~lL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-----G-vG~~~~~ 423 (498)
+++.+.+.....+++..+++ +|.- |--+++.||+++|+|+|+- |.......+ ++. | .|..++
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP- 425 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC-
Confidence 47887786677788888884 4433 3346899999999999984 444444454 342 2 676654
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHH
Q 041419 424 LPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAM 457 (498)
Q Consensus 424 ~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~ 457 (498)
.-+.++++++|.+++.|++.+.++.++++
T Consensus 426 -----~~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 426 -----PADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred -----CCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35789999999999998544344444444
No 122
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.88 E-value=0.18 Score=53.26 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=63.7
Q ss_pred CceeecCCccHHHHhccCCcceeee---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 354 VGLVVPAWAPQAEILAHPSVGGFLS---HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 354 ~~~~~~~~~pq~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
+++...++.+..+++..+++ +|. .-|+ .+++||+++|+|+|+.-+.+ .....+ +.-.-|..++..+...+
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccccc
Confidence 46778888888899998884 554 3444 58999999999999975431 233444 45445766652100011
Q ss_pred -cC-HHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 041419 430 -VT-RQEIEMLVRKIMVDKEGHSSIRVRAMELK 460 (498)
Q Consensus 430 -~~-~~~l~~al~~vl~~~~~~~~~~~~a~~l~ 460 (498)
-+ .++++++|.+++.++. +.++.++|.+.+
T Consensus 450 ~~~~~~~la~~I~~ll~~~~-~~~~~~~a~~~a 481 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSND-IDAFHEYSYQIA 481 (500)
T ss_pred hhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHH
Confidence 12 7889999999995432 255555555543
No 123
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.66 E-value=0.45 Score=48.23 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=51.2
Q ss_pred CceeecCCccHHH---HhccCCcceee------ecCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeec
Q 041419 354 VGLVVPAWAPQAE---ILAHPSVGGFL------SHCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKE 423 (498)
Q Consensus 354 ~~~~~~~~~pq~~---lL~~~~~~~~I------tHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~ 423 (498)
+|+.+.+++|+.+ ++.++++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+.
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~- 323 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI- 323 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe-
Confidence 4899999998665 46677763321 23333 458999999999998753 2222 2333 33322
Q ss_pred cCCCCCcCHHHHHHHHHHHhcCC
Q 041419 424 LPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 424 ~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
. -+.+++.++|++++.++
T Consensus 324 ----~-~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 ----A-DDPEEFVAAIEKALLED 341 (373)
T ss_pred ----C-CCHHHHHHHHHHHHhcC
Confidence 2 27899999999987653
No 124
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.66 E-value=0.16 Score=53.01 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=79.0
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhh-----c
Q 041419 277 PSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTR-----T 351 (498)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~ 351 (498)
++.-|||.+|--....+|+.++.-++.|.+.+..++|.+..+.. |+ ..|+.- +
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---------------ge-------~rf~ty~~~~Gl 813 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---------------GE-------QRFRTYAEQLGL 813 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---------------ch-------HHHHHHHHHhCC
Confidence 34568898888777889999999999999999999999987743 21 122211 1
Q ss_pred CCCceeecCCccHHHH-----hccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEee
Q 041419 352 DKVGLVVPAWAPQAEI-----LAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSK 422 (498)
Q Consensus 352 ~~~~~~~~~~~pq~~l-----L~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~ 422 (498)
..+.+++.+-+...+= |......-+.+. |+.|.++.|..|||||.+|...---..|.-+....|+|-.+.
T Consensus 814 ~p~riifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 814 EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred CccceeeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 2224555444433222 221111123443 789999999999999999985433333333324778887543
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.53 E-value=1.1 Score=44.28 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDD 49 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~ 49 (498)
||+++-....|++.=...+.+.|+++. +.+|++++.+.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~ 42 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFAD 42 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhh
Confidence 589999999999999999999999986 89999999987543
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.36 E-value=0.18 Score=42.85 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEK 88 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (498)
+|++++-....| ...+++.|+++ ||+|++++.....+ ......++.+..++.. . ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~--------~~~~~~~i~~~~~~~~----~----k~~--- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYE--------KYEIIEGIKVIRLPSP----R----KSP--- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCch--------hhhHhCCeEEEEecCC----C----Ccc---
Confidence 477777766666 45789999999 99999999854321 1111236777666421 1 111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchh---HHHHHHHhC-CcEEEEe
Q 041419 89 ILVLMHKSLPALRSAISAMKFRPTALIVDFFGTE---AMDVADEFG-LLKYMFI 138 (498)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~---a~~~A~~lg-iP~v~~~ 138 (498)
..+.. .. .+..++++. +||+|.+...... +..+++..+ +|++...
T Consensus 58 -~~~~~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 58 -LNYIK-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -HHHHH-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 11222 23 678888888 9999987765432 334667788 8887544
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.12 E-value=0.032 Score=44.53 Aligned_cols=55 Identities=16% Similarity=0.310 Sum_probs=44.9
Q ss_pred hhhHhhhcccCCCCcEEEEEccCCCCC---C--HHHHHHHHHHHHhcCCcEEEEEcCCCC
Q 041419 266 RVIILDWLNEQPSQSVIYVSFGSGGTL---S--AKQMTELAWSLELSQQRFIWVVRPPVE 320 (498)
Q Consensus 266 ~~~~~~~l~~~~~~~vV~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (498)
...+.+|+.+.+.+|.|+||+||.... . ...+..++++++..+..++..+.....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 457888999989999999999998543 2 246788999999999999999976543
No 128
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.12 E-value=0.12 Score=44.66 Aligned_cols=96 Identities=20% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHHHHH
Q 041419 23 PVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPALRS 102 (498)
Q Consensus 23 P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (498)
=+..|+++|.++ ||+|+++++......- . .. ..++.+..++....... ..... ....+..
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~~--~-~~----~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPEDD--E-EE----EDGVRVHRLPLPRRPWP-LRLLR-----------FLRRLRR 65 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG---S-EE----ETTEEEEEE--S-SSSG-GGHCC-----------HHHHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCccc--c-cc----cCCceEEeccCCccchh-hhhHH-----------HHHHHHH
Confidence 357899999999 9999999977644321 0 11 12667666664332211 00001 1123344
Q ss_pred HHHhcCCCCcEEEeCCCch-hHHHHHH-HhCCcEEEEe
Q 041419 103 AISAMKFRPTALIVDFFGT-EAMDVAD-EFGLLKYMFI 138 (498)
Q Consensus 103 ~l~~~~~~pD~vI~D~~~~-~a~~~A~-~lgiP~v~~~ 138 (498)
++.....+||+|.+..... ....+++ ..++|++...
T Consensus 66 ~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 66 LLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 4422234999999776332 2234445 7899998654
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=1.3 Score=46.29 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhh--cCCC
Q 041419 277 PSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTR--TDKV 354 (498)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--~~~~ 354 (498)
|++-+||++|+-.....++.+..-++-|+..+..++|....+..+. -...+ .+..++ ++..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----------------~~~~l-~~la~~~Gv~~e 489 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----------------INARL-RDLAEREGVDSE 489 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----------------HHHHH-HHHHHHcCCChh
Confidence 4566999999999888999888888889999999999987642210 01111 111111 2233
Q ss_pred ceeecCCccH---HHHhccCCcceeee---cCCcchHHHHHhhCCcEEeccccccchh--hHHHHhhhhcceEEeeccCC
Q 041419 355 GLVVPAWAPQ---AEILAHPSVGGFLS---HCGWNSTVESIVNGVPMIAWPLHAEQKM--NATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 355 ~~~~~~~~pq---~~lL~~~~~~~~It---HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~GvG~~~~~~~~ 426 (498)
.+++.+-.|. .+-+..++ +|+. -||+.|+.|+|..|||+|..+ ++||. |+.-++..+|+-..+.
T Consensus 490 RL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA---- 561 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA---- 561 (620)
T ss_pred heeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc----
Confidence 4555554443 34444455 4543 699999999999999999885 56652 2333333444443332
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhcccee
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSLQELV 492 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 492 (498)
+-.++=++.+++ +=.| +..+.+.+..++.. ..-+---+.+.|-++++....++.
T Consensus 562 --~s~~dYV~~av~-~g~d-------ral~q~~r~~l~~~--r~tspL~d~~~far~le~~y~~M~ 615 (620)
T COG3914 562 --DSRADYVEKAVA-FGSD-------RALRQQVRAELKRS--RQTSPLFDPKAFARKLETLYWGMW 615 (620)
T ss_pred --CCHHHHHHHHHH-hccc-------HHHHHhhHHHHHhc--cccCcccCHHHHHHHHHHHHHHHH
Confidence 223344666663 2223 33344444444432 111113345556666665554443
No 130
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.83 E-value=0.56 Score=36.72 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=50.0
Q ss_pred cCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 041419 379 HCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAME 458 (498)
Q Consensus 379 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~ 458 (498)
+|-..-+.|++++|+|+|.-.. ......+ +. |.....- . +.+++.++|+.+++|++. .+ +
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~-----~--~~~el~~~i~~ll~~~~~---~~----~ 68 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY-----N--DPEELAEKIEYLLENPEE---RR----R 68 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE-----C--CHHHHHHHHHHHHCCHHH---HH----H
Confidence 4445689999999999998755 3333333 12 3222211 2 889999999999998543 22 2
Q ss_pred HHHHHHHhhccCCchHHHHHHHH
Q 041419 459 LKYGAQKATSNSGSSYKSLSQVA 481 (498)
Q Consensus 459 l~~~~~~a~~~~g~~~~~~~~~~ 481 (498)
+++..++.+.+.-.....+++++
T Consensus 69 ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 69 IAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222222344566666666665
No 131
>PRK10125 putative glycosyl transferase; Provisional
Probab=93.76 E-value=9.2 Score=39.23 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred CeEEEE--cCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLL--ASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~--~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|+|+.+ ..+..|-=.=++.|++.|.++ ||+|.++..-.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~ 40 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYG 40 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecC
Confidence 455444 344455556689999999999 99999998765
No 132
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.52 E-value=1.5 Score=45.13 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEE-eeccCCCCCcCHHHHHHHHHHHhc
Q 041419 366 EILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFR-SKELPTESLVTRQEIEMLVRKIMV 444 (498)
Q Consensus 366 ~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~-~~~~~~~~~~~~~~l~~al~~vl~ 444 (498)
.++++++ ++|..= .=++.-|+..|||.+.+++ |+. ....+ +.+|.... .+. ..++.++|.+.+.+++.
T Consensus 323 ~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K-~~~~~-~~lg~~~~~~~~----~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 323 KILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--EHK-SAGIM-QQLGLPEMAIDI----RHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--hHH-HHHHH-HHcCCccEEech----hhCCHHHHHHHHHHHHh
Confidence 7788887 577532 1257778999999999988 443 33344 57888755 443 67888999999999998
Q ss_pred CC
Q 041419 445 DK 446 (498)
Q Consensus 445 ~~ 446 (498)
|.
T Consensus 392 ~r 393 (426)
T PRK10017 392 QL 393 (426)
T ss_pred CH
Confidence 73
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=93.18 E-value=4.7 Score=40.13 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=53.1
Q ss_pred ceeec---CCccHH---HHhccCCcceeeec---CCc-chHHHHHhhCCcEEeccc------cccc------hhhHHHHh
Q 041419 355 GLVVP---AWAPQA---EILAHPSVGGFLSH---CGW-NSTVESIVNGVPMIAWPL------HAEQ------KMNATMLT 412 (498)
Q Consensus 355 ~~~~~---~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~v~ 412 (498)
++.+. +++++. +++..++ +||.- =|+ .++.||+++|+|+|+--. .+|+ .++....+
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 56665 455543 5677777 56653 344 478899999999998633 2332 22332222
Q ss_pred h-hhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 413 E-EIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 413 ~-~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
. ..|.|..+ ...++++++++|++++..
T Consensus 280 ~~~~g~g~~~------~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKI------HKFQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeee------cCCCHHHHHHHHHHHHhc
Confidence 1 34666664 357999999999999654
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.80 E-value=15 Score=39.03 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=43.4
Q ss_pred CceeecCCccH-HHHhccCCcceeee---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEee
Q 041419 354 VGLVVPAWAPQ-AEILAHPSVGGFLS---HCGW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSK 422 (498)
Q Consensus 354 ~~~~~~~~~pq-~~lL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~ 422 (498)
+++.+.+|..+ ..+|..++ +||. +-|. +++.||+++|+|+|+... ..+...+ ++-..|..++
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp 521 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILD 521 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEEC
Confidence 46888787543 46677888 5664 3454 699999999999998754 3455555 4556787775
No 135
>PRK14098 glycogen synthase; Provisional
Probab=91.82 E-value=3.5 Score=43.45 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=65.2
Q ss_pred CceeecCCccHH---HHhccCCcceeeecC---Cc-chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSHC---GW-NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++.+..+.+.. .+++.++ +|+... |. .+.+||+++|+|.|+....+-........ +.-+-|...+
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~---- 434 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFH---- 434 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeC----
Confidence 367776777664 5777788 465432 33 37789999999988876533111111111 2346777764
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHh
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEK 486 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 486 (498)
..+++++.++|.+++..-+. ++ ++++..++++...-+-...++++++-.++
T Consensus 435 --~~d~~~la~ai~~~l~~~~~-~~------~~~~~~~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 435 --DYTPEALVAKLGEALALYHD-EE------RWEELVLEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred --CCCHHHHHHHHHHHHHHHcC-HH------HHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 35789999999987631000 11 12222223344455555566666554443
No 136
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.13 E-value=3 Score=37.04 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred hCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCC--CCCCCC-CCchHHHHHHHHHHhhHHHHHHHHhcCC
Q 041419 33 AHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANI--SSLVNP-DASLGEKILVLMHKSLPALRSAISAMKF 109 (498)
Q Consensus 33 ~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (498)
++ ||+|.|++....... . .+++.+.+..... .+. .. ..++...+. .-......+..+.++ +-
T Consensus 1 q~-gh~v~fl~~~~~~~~------~-----~GV~~~~y~~~~~~~~~~-~~~~~~~e~~~~-rg~av~~a~~~L~~~-Gf 65 (171)
T PF12000_consen 1 QR-GHEVVFLTERKRPPI------P-----PGVRVVRYRPPRGPTPGT-HPYVRDFEAAVL-RGQAVARAARQLRAQ-GF 65 (171)
T ss_pred CC-CCEEEEEecCCCCCC------C-----CCcEEEEeCCCCCCCCCC-CcccccHHHHHH-HHHHHHHHHHHHHHc-CC
Confidence 35 999999995543322 1 2666655543221 111 11 112222221 112223334444433 55
Q ss_pred CCcEEEeCCCchhHHHHHHHh-CCcEEEEe
Q 041419 110 RPTALIVDFFGTEAMDVADEF-GLLKYMFI 138 (498)
Q Consensus 110 ~pD~vI~D~~~~~a~~~A~~l-giP~v~~~ 138 (498)
.||+||+....-.++-+-+.+ ++|.+.++
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 899999998555556677778 89988754
No 137
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.70 E-value=1.3 Score=40.43 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=27.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
|+||++==-+. +-.=+..|+++|++. ||+|+++.|....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCC
Confidence 55655544444 444567899999877 8999999999854
No 138
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=90.32 E-value=14 Score=36.82 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=66.2
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeE-EEecCCCCCCCCCCCCCchH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFN-AVTLPLANISSLVNPDASLG 86 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 86 (498)
||+++-....|++.=...+.+.|+++. +.+|++++.+.+.+ .++..| .++ +..++.... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~-----l~~~~p---~vd~vi~~~~~~~-------~~~~ 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIP-----ILSENP---DINALYGLDRKKA-------KAGE 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHH-----HHhcCC---CccEEEEeChhhh-------cchH
Confidence 589999999999999999999999985 78999999887443 344443 443 233321100 0000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEE
Q 041419 87 EKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYM 136 (498)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~ 136 (498)
..+.. .. .+...+++. ++|++|.-........++...|.|.-+
T Consensus 66 ~~~~~----~~-~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 RKLAN----QF-HLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHH----HH-HHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 01111 11 122334444 899999655455566788888988654
No 139
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.19 E-value=2.9 Score=36.37 Aligned_cols=100 Identities=16% Similarity=0.044 Sum_probs=51.1
Q ss_pred CccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHh
Q 041419 17 GMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKS 96 (498)
Q Consensus 17 ~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (498)
..|=-.-...|+++|+++ ||+|+++++......... . ......... .........+ ..
T Consensus 11 ~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~~~~-----~----~~~~~~~~~-------~~~~~~~~~~-----~~ 68 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR-GHEVTVVSPGVKDPIEEE-----L----VKIFVKIPY-------PIRKRFLRSF-----FF 68 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS-SST-----E----EEE---TT--------SSTSS--HHH-----HH
T ss_pred CChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccchhh-----c----cceeeeeec-------ccccccchhH-----HH
Confidence 446667789999999999 999999987753322111 0 011111110 0111111111 12
Q ss_pred hHHHHHHHHhcCCCCcEEEeCCCch-hHHHHHHHhCCcEEEEecch
Q 041419 97 LPALRSAISAMKFRPTALIVDFFGT-EAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 97 ~~~l~~~l~~~~~~pD~vI~D~~~~-~a~~~A~~lgiP~v~~~~~~ 141 (498)
...+...+++. +||+|-+..... +....+-. ++|.+......
T Consensus 69 ~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 69 MRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 35677778887 999995444222 23333333 99988766443
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=89.87 E-value=11 Score=37.01 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=42.8
Q ss_pred CccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchh---hHHHHhhhhcceEEee
Q 041419 361 WAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKM---NATMLTEEIGVAFRSK 422 (498)
Q Consensus 361 ~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~---na~~v~~~~GvG~~~~ 422 (498)
.=|+...|+.++. ++||=-=.+-+.||+..|+|+.++|.-.-... ..+.+ ++.|+-....
T Consensus 219 ~nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 219 ENPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred CCcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-HHCCCEEECC
Confidence 3478899999985 77777777999999999999999999761111 22233 3556655543
No 141
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=88.26 E-value=3.7 Score=36.49 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=60.4
Q ss_pred EEcCCCccCHHHHHHHHHHH-HhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHH
Q 041419 12 LLASPGMGHLIPVVELGKRL-VAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKIL 90 (498)
Q Consensus 12 l~~~p~~GHv~P~l~LA~~L-~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (498)
++..++.||..=|+.|.+.+ .++..++..+++...........-++... .....+..++.... . .+.......
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~-~~~~~~~~~~r~r~--v---~q~~~~~~~ 75 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS-SKRHKILEIPRARE--V---GQSYLTSIF 75 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc-cccceeeccceEEE--e---chhhHhhHH
Confidence 45678889999999999999 33314555555544432211000011110 00112333332111 0 111222233
Q ss_pred HHHHHhhHHHHHHHHhcCCCCcEEEeCCCch--hHHHHHHHh------CCcEEEEe
Q 041419 91 VLMHKSLPALRSAISAMKFRPTALIVDFFGT--EAMDVADEF------GLLKYMFI 138 (498)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~--~a~~~A~~l------giP~v~~~ 138 (498)
.........+.-+.+. +||+||+.--.. ..+.+|+-+ |.++|.+-
T Consensus 76 ~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 76 TTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred HHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 3333334444444333 899999885444 345788888 99988654
No 142
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=85.51 E-value=6.6 Score=40.97 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=67.5
Q ss_pred CCccHHHH---hccCCcceeee---cCCcc-hHHHHHhhCCc----EEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 360 AWAPQAEI---LAHPSVGGFLS---HCGWN-STVESIVNGVP----MIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 360 ~~~pq~~l---L~~~~~~~~It---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
..+++.++ +..+++ ++. +-|.| +..||+++|+| +|+--+.+ .+..+ +-|+.++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVn------ 405 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVN------ 405 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEEC------
Confidence 45566544 566774 553 44654 78899999999 66654433 22223 2366654
Q ss_pred CcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 041419 429 LVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCE 485 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 485 (498)
-.+.++++++|.++|+.+. ++.+++.+++++.+. ..+...-+++|++++.
T Consensus 406 P~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 406 PYDIDGMADAIARALTMPL--EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred CCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 3578999999999998654 456666666666643 2566777788887663
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=81.88 E-value=4.6 Score=40.22 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=44.2
Q ss_pred CccHH---HHhccCCcceeee---cCC-cchHHHHHhhCCcEEeccccc--cch---hhHHHHhhh-----------hcc
Q 041419 361 WAPQA---EILAHPSVGGFLS---HCG-WNSTVESIVNGVPMIAWPLHA--EQK---MNATMLTEE-----------IGV 417 (498)
Q Consensus 361 ~~pq~---~lL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~~v~~~-----------~Gv 417 (498)
++|+. .++..+++ +|. ..| ..++.||+++|+|+|+.-..+ |.- .|+-.+ +. .++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccc
Confidence 35544 45777774 442 333 358999999999999976532 211 111111 00 134
Q ss_pred eEEeeccCCCCCcCHHHHHHHHHHHhcCC
Q 041419 418 AFRSKELPTESLVTRQEIEMLVRKIMVDK 446 (498)
Q Consensus 418 G~~~~~~~~~~~~~~~~l~~al~~vl~~~ 446 (498)
|..++ .+.+++.+++.++|.|+
T Consensus 274 G~~v~-------~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 274 GYFLD-------PDIEDAYQKLLEALANW 295 (331)
T ss_pred ccccC-------CCHHHHHHHHHHHHhCC
Confidence 44432 35678888888988874
No 144
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=80.39 E-value=9 Score=40.05 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred ecCCccHHH---HhccCCcceeee---cCCcc-hHHHHHhhCCc----EEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 358 VPAWAPQAE---ILAHPSVGGFLS---HCGWN-STVESIVNGVP----MIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 358 ~~~~~pq~~---lL~~~~~~~~It---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+.+++++.+ ++..+++ ||. +-|.| ++.||+++|+| +|+--..+ .+. ...-|+.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~----~~~~g~lv~---- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE----ELSGALLVN---- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chh----hcCCCEEEC----
Confidence 335667654 4667774 552 45654 77899999999 44432211 111 112355543
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQC 484 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 484 (498)
..+.++++++|.+++++++ +..+.+.++.++.+. .-+...-++.+++++
T Consensus 411 --p~d~~~la~ai~~~l~~~~--~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 411 --PYDIDEVADAIHRALTMPL--EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred --CCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 3478999999999998753 233444444444422 356666677777654
No 145
>PLN02939 transferase, transferring glycosyl groups
Probab=80.23 E-value=29 Score=39.35 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=52.2
Q ss_pred CceeecCCccHH---HHhccCCcceeeec---CCc-chHHHHHhhCCcEEeccccc--cchhh--HHHHhhhhcceEEee
Q 041419 354 VGLVVPAWAPQA---EILAHPSVGGFLSH---CGW-NSTVESIVNGVPMIAWPLHA--EQKMN--ATMLTEEIGVAFRSK 422 (498)
Q Consensus 354 ~~~~~~~~~pq~---~lL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~GvG~~~~ 422 (498)
+++.+..+.+.. .+++.++ +||.- =|+ .+.+||+++|+|.|+....+ |--.+ ...+.+.-+-|...+
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 357776777654 4778888 57653 232 48999999999999876633 32111 111111235676654
Q ss_pred ccCCCCCcCHHHHHHHHHHHhc
Q 041419 423 ELPTESLVTRQEIEMLVRKIMV 444 (498)
Q Consensus 423 ~~~~~~~~~~~~l~~al~~vl~ 444 (498)
..+++++.++|.+++.
T Consensus 915 ------~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 ------TPDEQGLNSALERAFN 930 (977)
T ss_pred ------CCCHHHHHHHHHHHHH
Confidence 3478889999988874
No 146
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.19 E-value=3.4 Score=35.29 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=42.7
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
|++++|++.+.++-+|-.-..-++..|.++ |++|++++..--.+.+.+...+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp~e~i~~~a~~ 52 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTSQEEFIDAAIE 52 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999999999998 9999999976554444434333
No 147
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.96 E-value=15 Score=30.13 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=33.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
||++.+.++-.|-....-++..|+++ |++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCC
Confidence 58999999999999999999999999 9999888754
No 148
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=75.72 E-value=88 Score=31.04 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCch
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASL 85 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (498)
+|+|+++-.-..||+.=...+-..|+++. +.++++++.+.+.+ +++..| .++-+-.-. .....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~-----i~~~~p---~I~~vi~~~-------~~~~~- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAP-----ILKLNP---EIDKVIIID-------KKKKG- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHH-----HHhcCh---Hhhhhcccc-------ccccc-
Confidence 48899999999999999999999999985 68999999887443 344333 333211100 00011
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEE
Q 041419 86 GEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYM 136 (498)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~ 136 (498)
........+...+++. ++|+||.=...+-...++...++|.-.
T Consensus 65 ------~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ------LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011122344444444 899999777677677777788888754
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.12 E-value=16 Score=32.02 Aligned_cols=41 Identities=22% Similarity=0.439 Sum_probs=36.4
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
...|+|.+.-.|+.|-..-.+.++..|++. |+.|-=+-++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~E 43 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPE 43 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeee
Confidence 346899999999999999999999999999 99988666665
No 150
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=73.41 E-value=4.9 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDA 50 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 50 (498)
|||++...|+.+-+. ...+.++|+++ |++|.++.++.-.+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPSAERF 41 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCcHHHH
Confidence 689999999888888 99999999999 999999998864433
No 151
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.12 E-value=22 Score=34.54 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecC-CCC--CCCCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLP-LAN--ISSLVN 80 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~--~~~~~~ 80 (498)
+.+..+|.+.-.|+.|--.=.=.|++.|.++ ||+|.++.-.+..++..-..+. ..++...+. .++ ...+ +
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLG-----DRiRM~~~~~~~~vFiRs~-~ 120 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILG-----DRIRMQRLAVDPGVFIRSS-P 120 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccc-----cHhhHHhhccCCCeEEeec-C
Confidence 4566788999999999999999999999999 9999999977655442222221 123322221 000 0111 1
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhH--HHHHHHhCCcEEE
Q 041419 81 PDASLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEA--MDVADEFGLLKYM 136 (498)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a--~~~A~~lgiP~v~ 136 (498)
+.-. .-=........-.+++.. ++|+||++.....- ..+++.-.+=.++
T Consensus 121 srG~-----lGGlS~at~~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 121 SRGT-----LGGLSRATREAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred CCcc-----chhhhHHHHHHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 1111 111123344555667777 99999999765533 2556655555544
No 152
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=71.67 E-value=38 Score=32.01 Aligned_cols=100 Identities=13% Similarity=0.061 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHHHHHH
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPALRSA 103 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (498)
+.+|+++|++. | +|+++.|.....-..+. .+....+++..++....... ..-......+..+ .+..+
T Consensus 16 i~aL~~~l~~~-g-~V~VvAP~~~~Sg~g~a----it~~~pl~~~~~~~~~~~~~-~~v~GTPaDcv~~------gl~~l 82 (244)
T TIGR00087 16 IRALYQALKEL-G-EVTVVAPARQRSGTGHS----LTLFEPLRVGQVKVKNGAHI-YAVDGTPTDCVIL------GINEL 82 (244)
T ss_pred HHHHHHHHHhC-C-CEEEEeCCCCccccccC----cCCCCCeEEEEeccCCCccE-EEEcCcHHHHHHH------HHHHh
Confidence 56789999988 8 89999988744322211 22233555555431100000 0000111111111 12222
Q ss_pred HHhcCCCCcEEEeCC-------------CchhHHHHHHHhCCcEEEEec
Q 041419 104 ISAMKFRPTALIVDF-------------FGTEAMDVADEFGLLKYMFIA 139 (498)
Q Consensus 104 l~~~~~~pD~vI~D~-------------~~~~a~~~A~~lgiP~v~~~~ 139 (498)
+ ..+||+||... -+..|+.-|..+|||.+.++.
T Consensus 83 ~---~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 83 M---PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred c---cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 2 23789998653 223445666678999998774
No 153
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=71.54 E-value=7.4 Score=32.30 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=27.0
Q ss_pred CeEEEEcCCCcc---CHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMG---HLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~G---Hv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|+|+|+.-|-.+ .-.-.++|+.+.++| ||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCc
Confidence 678888777655 345678999999999 99999999775
No 154
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=71.54 E-value=35 Score=34.02 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=66.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEE-EecCCCCCCCCCCCCCch
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNA-VTLPLANISSLVNPDASL 85 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~ 85 (498)
|||+++-....||+.=...+.+.|+++. +.+|++++.+.+.+ .++..| .++- ..++.. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~-----l~~~~P---~vd~vi~~~~~-------~~~-- 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRP-----LLSRMP---EVNEAIPMPLG-------HGA-- 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHH-----HHhcCC---ccCEEEecccc-------cch--
Confidence 6899999999999999999999999975 88999999887443 344444 4432 222210 000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEE
Q 041419 86 GEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYM 136 (498)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~ 136 (498)
..+. ....+...+++. ++|++|.=....-...++...|+|.-+
T Consensus 64 -~~~~-----~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 -LEIG-----ERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -hhhH-----HHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0010 011223344444 899999655455556777777888653
No 155
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=71.35 E-value=5.8 Score=42.11 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=57.3
Q ss_pred ceeecCCccH---HHHhccCCcceeeecC---CcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 355 GLVVPAWAPQ---AEILAHPSVGGFLSHC---GWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 355 ~~~~~~~~pq---~~lL~~~~~~~~ItHg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
.+.+.++... ...+..+. ++|.=+ |.++.+||+++|+|+| .+.....| +...=|..+.
T Consensus 410 ~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~------ 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID------ 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC------
Confidence 5777777663 35566666 677655 6789999999999999 33334444 4544555542
Q ss_pred CcCHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 041419 429 LVTRQEIEMLVRKIMVDKEGHSSIRVRAMEL 459 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l 459 (498)
+.++|.++|..+|.+.+.-..+...|-+.
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~ 502 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKL 502 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 56899999999999853223344333333
No 156
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=71.22 E-value=18 Score=35.68 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=36.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHD 48 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~ 48 (498)
|||+++-....|++.=...+.+.|+++. +.+|++++.+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~ 42 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFA 42 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHH
Confidence 6899999999999999999999999975 8999999988643
No 157
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=70.96 E-value=62 Score=28.35 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC-cccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD-DASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
-|.+++.++.|-....+.+|-+...+ |++|.|+=.-... +.-....++..+ ++.+......... .. .+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~---~~-~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFW---TT-ENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCcc---CC-CChHH
Confidence 36778889999999999999999998 9999994321110 111122333333 6777665532211 11 11111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGT 121 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 121 (498)
. ...........++.+..- .+|++|.|-...
T Consensus 76 ~-~~~a~~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 76 D-IAAAAEGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred H-HHHHHHHHHHHHHHHhcC--CCCEEEEechHh
Confidence 2 223344444555555554 899999997544
No 158
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.76 E-value=1.2e+02 Score=30.27 Aligned_cols=130 Identities=10% Similarity=-0.036 Sum_probs=82.7
Q ss_pred CCCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCC
Q 041419 3 STKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPD 82 (498)
Q Consensus 3 ~~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (498)
....+.|++++..|-.||--.|=--|..|++. |.+|.+++.-...+. ...++ .| .|+++.++....-+. .
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~--e~l~~-hp---rI~ih~m~~l~~~~~---~ 77 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPL--EELLN-HP---RIRIHGMPNLPFLQG---G 77 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCCh--HHHhc-CC---ceEEEeCCCCcccCC---C
Confidence 45788999999999999999999999999999 999999986654331 22233 44 999999887553322 2
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeC-CCchhHHHHHH----HhCCcEEEEecchHHH
Q 041419 83 ASLGEKILVLMHKSLPALRSAISAMKFRPTALIVD-FFGTEAMDVAD----EFGLLKYMFIASNAWF 144 (498)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D-~~~~~a~~~A~----~lgiP~v~~~~~~~~~ 144 (498)
............+...-+..++.. +++|.++.- +-+.....+|. -.|.+.++=|....+.
T Consensus 78 p~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 222222233333333344444443 378877754 43444444443 3477777766655544
No 159
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=70.40 E-value=89 Score=32.91 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=70.3
Q ss_pred eeecCCccHHH---HhccCCcceeee--cCCcchH-HHHHhhCC----cEEeccccccchhhHHHHhhhhcceEEeeccC
Q 041419 356 LVVPAWAPQAE---ILAHPSVGGFLS--HCGWNST-VESIVNGV----PMIAWPLHAEQKMNATMLTEEIGVAFRSKELP 425 (498)
Q Consensus 356 ~~~~~~~pq~~---lL~~~~~~~~It--HgG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~ 425 (498)
+.+.+.+|+.+ ++..+++ ++|| .-|+|-+ .|.++++. |+|+-=+ .-|+ +.+.-++.+.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSef-----aGaa---~~l~~AllVN--- 431 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEF-----AGAA---VELKGALLTN--- 431 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecc-----ccch---hhcCCCEEEC---
Confidence 45557778765 4456776 5665 4588855 49999987 5444422 2222 2334466664
Q ss_pred CCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q 041419 426 TESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKS 487 (498)
Q Consensus 426 ~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 487 (498)
-.+.++++++|.++|+.+. ++-++|.+++.+.+. ......=++.|++++...
T Consensus 432 ---P~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 432 ---PYDPVRMDETIYVALAMPK--AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhc
Confidence 3588999999999999755 455666666666644 345666777888777543
No 160
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.25 E-value=41 Score=32.16 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=34.0
Q ss_pred eeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccc
Q 041419 356 LVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPL 400 (498)
Q Consensus 356 ~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 400 (498)
+.+..-++-.+++.+++ ++||-.+ .+-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 44556678889999999 6888754 578999999999999865
No 161
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=70.01 E-value=49 Score=31.53 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
|+|+++- ++|. --.|++.|.++ ||+|+..+........ +... ....... +.
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~-g~~v~~s~~t~~~~~~----~~~~---g~~~v~~-------g~--------- 51 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQ-GIEILVTVTTSEGKHL----YPIH---QALTVHT-------GA--------- 51 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhC-CCeEEEEEccCCcccc----cccc---CCceEEE-------CC---------
Confidence 4565553 3332 67899999999 9999988766532210 1110 0111110 00
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch------hHHHHHHHhCCcEEEEe
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGT------EAMDVADEFGLLKYMFI 138 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~------~a~~~A~~lgiP~v~~~ 138 (498)
+ ....+.+++++. ++|+||--.+-+ -+..+|+++|||++.+-
T Consensus 52 -l------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 52 -L------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -C------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0 012355666776 899888433222 24479999999999764
No 162
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=68.90 E-value=72 Score=28.91 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC-cccccccccCCCCCCCeEEEecCCCCCCCCCCCCCc
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD-DASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDAS 84 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (498)
.+=.|.+++..+.|-....+.+|-+...+ |++|.++=.-... ..-....++..+ ++.+......... .. .+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~---~~-~~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTW---ET-QD 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCcc---cC-CC
Confidence 34578999999999999999999999999 9999988543211 111112233332 6777665532111 11 11
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch
Q 041419 85 LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGT 121 (498)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 121 (498)
.... ............+.+.+- .+|+||.|-...
T Consensus 93 ~~e~-~~~~~~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERD-IAAAREGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred cHHH-HHHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 1111 233344445555555544 899999997444
No 163
>PRK06321 replicative DNA helicase; Provisional
Probab=67.59 E-value=12 Score=39.17 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=37.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
=|++..-|+.|--.-.+.+|...+.+.|..|.|++.+-..+.+....+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla 276 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIIC 276 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHH
Confidence 4678889999999999999999864328999999988765544444443
No 164
>PRK05595 replicative DNA helicase; Provisional
Probab=67.31 E-value=11 Score=39.10 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=37.6
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
-=+++...|+.|--.-.+.+|..+. +. |+.|.|++.+-..+.+....+.
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEms~~~l~~R~~a 251 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEMSKEQLAYKLLC 251 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHH
Confidence 3467788899999999999998765 56 9999999988665544444343
No 165
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.99 E-value=24 Score=34.14 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=48.4
Q ss_pred ecCCccHHHHhccCCcceeeecCCcchHH-HHHhhCCcEEeccccccch--hhHHHHhhhhcceEEeeccCCCCCcCHHH
Q 041419 358 VPAWAPQAEILAHPSVGGFLSHCGWNSTV-ESIVNGVPMIAWPLHAEQK--MNATMLTEEIGVAFRSKELPTESLVTRQE 434 (498)
Q Consensus 358 ~~~~~pq~~lL~~~~~~~~ItHgG~gs~~-eal~~GvP~v~~P~~~DQ~--~na~~v~~~~GvG~~~~~~~~~~~~~~~~ 434 (498)
+..|-...++|.++++ .|-- +||.. +++=.|||+|.+|-.+-|+ ..|.+-.+-+|+.+.+-+ ..+..
T Consensus 299 ~lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~ 368 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQA 368 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------Cchhh
Confidence 3355556667766663 3322 34444 4677899999999999885 455554345677766531 22233
Q ss_pred HHHHHHHHhcCCcc
Q 041419 435 IEMLVRKIMVDKEG 448 (498)
Q Consensus 435 l~~al~~vl~~~~~ 448 (498)
-..+.+++|.|+++
T Consensus 369 a~~~~q~ll~dp~r 382 (412)
T COG4370 369 AAQAVQELLGDPQR 382 (412)
T ss_pred HHHHHHHHhcChHH
Confidence 33344449999554
No 166
>PRK08506 replicative DNA helicase; Provisional
Probab=66.76 E-value=12 Score=39.27 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=39.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
-=|++...|+.|--.-.+.+|....+. |+.|.|++.+-..+.+....+.
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~Rlla 241 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLRMLS 241 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHHHHH
Confidence 347788889999999999999999887 9999999988766554444444
No 167
>PRK08760 replicative DNA helicase; Provisional
Probab=65.42 E-value=14 Score=38.70 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=38.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
-=|++..-|+.|--.-.+.+|...+.+.|+.|.|++.+-..+.+....+.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a 279 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLIS 279 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHH
Confidence 34788889999999999999998864328899999988766544444443
No 168
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=65.17 E-value=11 Score=34.15 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCCCcEEE-eCCCch-hHHHHHHHhCCcEEEEecchH
Q 041419 108 KFRPTALI-VDFFGT-EAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 108 ~~~pD~vI-~D~~~~-~a~~~A~~lgiP~v~~~~~~~ 142 (498)
...||+|| .|+..- .+..=|.++|||++.+.-+.+
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 45899877 454333 456778999999999875554
No 169
>PRK05973 replicative DNA helicase; Provisional
Probab=64.84 E-value=25 Score=33.07 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=37.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSN 54 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (498)
--+++.--|+.|--.-.++++....++ |..|.|++.+...+.+...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHH
Confidence 447788889999999999999999888 9999999998765443333
No 170
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=64.01 E-value=53 Score=31.10 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCC-CCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHHHHH
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVP-NNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPALRS 102 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (498)
.-.|+++|+ . +++|+++.|..+. ++.... .....++...+.. ..+.- ......+.. -.+..
T Consensus 16 i~aL~~al~-~-~~dV~VVAP~~~q-----Sg~s~slTl~~Plr~~~~~~----~~~av-~GTPaDCV~------lal~~ 77 (252)
T COG0496 16 IRALARALR-E-GADVTVVAPDREQ-----SGASHSLTLHEPLRVRQVDN----GAYAV-NGTPADCVI------LGLNE 77 (252)
T ss_pred HHHHHHHHh-h-CCCEEEEccCCCC-----cccccccccccCceeeEecc----ceEEe-cCChHHHHH------HHHHH
Confidence 457888888 6 9999999999844 333321 1111233222221 00000 011112211 13455
Q ss_pred HHHhcCCCCcEEEeCC-------------CchhHHHHHHHhCCcEEEEecc
Q 041419 103 AISAMKFRPTALIVDF-------------FGTEAMDVADEFGLLKYMFIAS 140 (498)
Q Consensus 103 ~l~~~~~~pD~vI~D~-------------~~~~a~~~A~~lgiP~v~~~~~ 140 (498)
++++. .||+||... -+.+|+.=|..+|||.+.++..
T Consensus 78 l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 78 LLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred hccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 55554 699998642 2233445566789999887643
No 171
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=63.97 E-value=11 Score=34.23 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=34.3
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.+.++|++.-.|+.|=+.-...|.+.|.++ ||+|.++.++.
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 356789888888777665579999999999 99999999886
No 172
>PRK08006 replicative DNA helicase; Provisional
Probab=63.84 E-value=18 Score=37.92 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=38.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCcccccccccC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHAV 58 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (498)
-=|++..-|+.|--.-.+.+|...+ +. |+.|.|++.+-..+.+....+..
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlEM~~~ql~~Rlla~ 275 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLEMPGEQIMMRMLAS 275 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHH
Confidence 4467888999999999999999986 45 89999999886655544444543
No 173
>PTZ00445 p36-lilke protein; Provisional
Probab=63.72 E-value=14 Score=33.84 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=59.1
Q ss_pred cCHHH-HHHHHHHHHhCCCCEEEEEEcCCCCc--------------ccccccccCCCCCCCeEEEecCCCCCCCCCCCCC
Q 041419 19 GHLIP-VVELGKRLVAHHDVQVTVFVVASHDD--------------ASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDA 83 (498)
Q Consensus 19 GHv~P-~l~LA~~L~~r~Gh~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (498)
+|+.| +..+.++|.+. |..|+++|...... .+. ..+....+...+.-+. . ..+..|.+..
T Consensus 74 ~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~-~~lk~s~~~~~i~~~~--~-yyp~~w~~p~ 148 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNS-NIKISVVTFSDKELIPSENRPRYISGDRMVE-AALKKSKCDFKIKKVY--A-YYPKFWQEPS 148 (219)
T ss_pred ccCCHHHHHHHHHHHHC-CCeEEEEEccchhhccccCCcceechHHHHH-HHHHhcCccceeeeee--e-eCCcccCChh
Confidence 56777 88999999999 99999999876432 110 0111111111221110 0 0111111111
Q ss_pred chHHHHHHHHHHhh--HHHHHHHHhcCCCC-cEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 84 SLGEKILVLMHKSL--PALRSAISAMKFRP-TALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 84 ~~~~~~~~~~~~~~--~~l~~~l~~~~~~p-D~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
.+...-...-.... -+++.++++.+-.| +++..|- ...-+..|+++|+-.+.+.
T Consensus 149 ~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD-~~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 149 DYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD-DMNNCKNALKEGYIALHVT 205 (219)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecC-CHHHHHHHHHCCCEEEEcC
Confidence 11110000000112 24477787774344 5777887 4556789999999998654
No 174
>PRK05636 replicative DNA helicase; Provisional
Probab=63.33 E-value=8.9 Score=40.52 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=37.6
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
--|++..-|+.|--.-.+.+|.....++|..|.|++.+-..+.+....+.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls 315 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLS 315 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHH
Confidence 34678889999999999999988764338899999988765554444444
No 175
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.91 E-value=34 Score=38.47 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHhccCCcceeee---cCCcc-hHHHHHhhCCc---EEeccccccchhhHHHHhhhhc-ceEEeeccCCCCCcCHHHHHH
Q 041419 366 EILAHPSVGGFLS---HCGWN-STVESIVNGVP---MIAWPLHAEQKMNATMLTEEIG-VAFRSKELPTESLVTRQEIEM 437 (498)
Q Consensus 366 ~lL~~~~~~~~It---HgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-vG~~~~~~~~~~~~~~~~l~~ 437 (498)
+++..+++ ||. .-|.| +..|++++|+| ++++.-++ ..+. .+| -|+.+. -.+.+++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVn------P~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVN------PWNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEEC------CCCHHHHHH
Confidence 56667774 543 45776 67799999999 44443322 1222 233 466664 357899999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhc
Q 041419 438 LVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 438 al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
+|.++|+.++ +..+++.+++.+.+. .-+...-++.|++++....
T Consensus 436 AI~~aL~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 436 AIKEALNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHh
Confidence 9999998432 344555555555533 2455566777777776554
No 176
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=61.59 E-value=85 Score=31.32 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEE-EecCCCCCCCCCCCCCc
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNA-VTLPLANISSLVNPDAS 84 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~ 84 (498)
+++|+++-....||+.=...+.+.|+++. +.+|++++.+.+.+ .++..| .++- +.++... ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~-----l~~~~P---~id~vi~~~~~~--------~~ 68 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIP-----ILSENP---EINALYGIKNKK--------AG 68 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHH-----HhccCC---CceEEEEecccc--------cc
Confidence 57899999999999999999999999985 88999999887544 334443 4432 2222110 00
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEE
Q 041419 85 LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYM 136 (498)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~ 136 (498)
....+. ..-.+...+++. ++|++|.-........++...|.|..+
T Consensus 69 ~~~~~~-----~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 69 ASEKIK-----NFFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHHH-----HHHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 000111 011222334444 899999554444445667777887654
No 177
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=60.52 E-value=78 Score=30.18 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCC-CCCCCCCCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLA-NISSLVNPDA 83 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 83 (498)
..+|||++.==-+. |-.=+..|+++|++. | +|+++.|.....-..+. ......+++..+... ..... . -.
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg~g~a----it~~~pl~~~~~~~~~~~~~y-~-v~ 73 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAEPHSGMSHA----MTLGVPLRIKEYQKNNRFFGY-T-VS 73 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCCCCCCCccc----ccCCCCeEEEEEccCCCceEE-E-Ec
Confidence 45688887643332 223467899999988 7 79999888744322221 122234555444311 10000 0 00
Q ss_pred chHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCC----------C---chhHHHHHHHhCCcEEEEec
Q 041419 84 SLGEKILVLMHKSLPALRSAISAMKFRPTALIVDF----------F---GTEAMDVADEFGLLKYMFIA 139 (498)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~----------~---~~~a~~~A~~lgiP~v~~~~ 139 (498)
.....+..+ .+..++ ..+||+||... + +.+|+.-|..+|||.+.++.
T Consensus 74 GTPaDCV~l------al~~~~---~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 74 GTPVDCIKV------ALSHIL---PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CcHHHHHHH------HHHhhc---CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 111111111 122222 23799999653 2 23344566678999998874
No 178
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.38 E-value=1.5e+02 Score=27.94 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=50.7
Q ss_pred CceeecCCcc---HHHHhccCCcceeeec---CCcch-HHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 354 VGLVVPAWAP---QAEILAHPSVGGFLSH---CGWNS-TVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 354 ~~~~~~~~~p---q~~lL~~~~~~~~ItH---gG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+++...++++ ...++..++ +++.. .|.|. +.||+++|+|+|.. +.......+ ...+.|. +.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~-~~~~~g~-~~---- 324 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVV-EDGETGL-LV---- 324 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHh-cCCCceE-ec----
Confidence 4677778888 334566566 45555 35544 59999999999665 344333333 3332466 32
Q ss_pred CCCcCHHHHHHHHHHHhcC
Q 041419 427 ESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~ 445 (498)
...+.+++.+++..++.+
T Consensus 325 -~~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 325 -PPGDVEELADALEQLLED 342 (381)
T ss_pred -CCCCHHHHHHHHHHHhcC
Confidence 222789999999999987
No 179
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=59.93 E-value=17 Score=37.41 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=38.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCccccccccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
=+++...|+.|--.-.+.+|..+. +. |+.|.|++.+-..+.+....+.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEMSAEQLGERLLA 244 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHH
Confidence 467888899999999999998887 66 9999999988765554444443
No 180
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=59.19 E-value=35 Score=36.46 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=46.9
Q ss_pred cHHHHhccCCcceeee---cCCcc-hHHHHHhhCCcEEeccccc-cchhhHHHHhhhh-cceEEeeccC-CCCCcCHHHH
Q 041419 363 PQAEILAHPSVGGFLS---HCGWN-STVESIVNGVPMIAWPLHA-EQKMNATMLTEEI-GVAFRSKELP-TESLVTRQEI 435 (498)
Q Consensus 363 pq~~lL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~-GvG~~~~~~~-~~~~~~~~~l 435 (498)
+..+++.-++ ++|. +=|+| ++.||+++|+|+|.-...+ .... ..+.... ..|+.+...+ ..-.-+.++|
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHH
Confidence 4667777777 4555 45654 8999999999999986633 2222 1121111 2566664211 0011245788
Q ss_pred HHHHHHHhcC
Q 041419 436 EMLVRKIMVD 445 (498)
Q Consensus 436 ~~al~~vl~~ 445 (498)
++++.+++..
T Consensus 543 a~~m~~~~~~ 552 (590)
T cd03793 543 TQYMYEFCQL 552 (590)
T ss_pred HHHHHHHhCC
Confidence 8888888853
No 181
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.17 E-value=91 Score=32.31 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
.++.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 367 ~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 3556666777 8999998753 5688999999998643
No 182
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=58.97 E-value=55 Score=29.89 Aligned_cols=116 Identities=8% Similarity=-0.060 Sum_probs=59.0
Q ss_pred eeecCCccHHHHhccCCcceeeecCCcchHHHHHh----hCCcEEeccccccchhhH-----HHHhhhhcceEEeeccCC
Q 041419 356 LVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIV----NGVPMIAWPLHAEQKMNA-----TMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 356 ~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na-----~~v~~~~GvG~~~~~~~~ 426 (498)
+.......+...+..++ ++|.--+.-.+.+.++ .++++-+ .|.+..+ +.+ ++-++-+.+-...+
T Consensus 56 i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~ 128 (202)
T PRK06718 56 IRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDGA 128 (202)
T ss_pred EEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCCC
Confidence 33333333344456666 5666656555555444 4554433 3543333 222 23233333321000
Q ss_pred CCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVA 481 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 481 (498)
.-.-+..|++.|++.+ .+++ ..+-+...++++.+++.+.+........++++
T Consensus 129 -sP~la~~lr~~ie~~~-~~~~-~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 129 -SPKLAKKIRDELEALY-DESY-ESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred -ChHHHHHHHHHHHHHc-chhH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1122467888888877 4455 77888888888887765433333333444444
No 183
>PRK08840 replicative DNA helicase; Provisional
Probab=58.88 E-value=24 Score=36.94 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAV 58 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (498)
-=|++..-|+.|--.-.+.+|...+.+.|+.|.|++.+-..+.+....+..
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHh
Confidence 346788889999999999999998642289999999886665555554543
No 184
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.57 E-value=19 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
.|+++.+.+..-|-.-+..||..|+++ ||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCC
Confidence 479999999999999999999999999 9999988654
No 185
>PRK07773 replicative DNA helicase; Validated
Probab=58.39 E-value=24 Score=40.31 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=38.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
--|++..-|+.|--.-.+++|...+.+.|..|.|++.+-..+.+....+.
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s 267 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLS 267 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Confidence 34788889999999999999999875437899999988766555555444
No 186
>PRK14099 glycogen synthase; Provisional
Probab=58.24 E-value=30 Score=36.43 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCCCeEEEEcC--------CCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 5 KLKPHICLLAS--------PGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 5 ~~~~~Ill~~~--------p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|++|||++++. |+-|++ .-+|.++|+++ ||+|.++.|-.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~-g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAH-GVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHC-CCcEEEEeCCC
Confidence 47799999874 344444 56788999999 99999999854
No 187
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=57.34 E-value=35 Score=30.07 Aligned_cols=44 Identities=7% Similarity=0.025 Sum_probs=28.6
Q ss_pred HHHhhHHHHHHHHhcCCCCcEEEeCCCchhHH--HHHHH---h-CCcEEEEe
Q 041419 93 MHKSLPALRSAISAMKFRPTALIVDFFGTEAM--DVADE---F-GLLKYMFI 138 (498)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~--~~A~~---l-giP~v~~~ 138 (498)
.....+.+.+++++. +||+||+.+...... ...++ + ++|.+++.
T Consensus 74 ~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvv 123 (169)
T PF06925_consen 74 SRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVV 123 (169)
T ss_pred HHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEE
Confidence 344556788888888 999999987654333 11222 4 47777655
No 188
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=57.17 E-value=19 Score=35.54 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCCCcEEE-eCCCc-hhHHHHHHHhCCcEEEEecchH
Q 041419 108 KFRPTALI-VDFFG-TEAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 108 ~~~pD~vI-~D~~~-~~a~~~A~~lgiP~v~~~~~~~ 142 (498)
.+.||+|| .|... ..|..=|.++|||+|.+.=+.+
T Consensus 150 ~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 150 GGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 35799877 55433 3566789999999998875554
No 189
>PRK06904 replicative DNA helicase; Validated
Probab=57.01 E-value=23 Score=37.08 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=38.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAV 58 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (498)
-=|++..-|+.|--.-++.+|...+.+.|+.|.|++.+-..+.+....+..
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh
Confidence 347888899999999999999987642289999999887665555554444
No 190
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=57.00 E-value=32 Score=32.27 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCCCcEEE-eCCCch-hHHHHHHHhCCcEEEEecchH
Q 041419 108 KFRPTALI-VDFFGT-EAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 108 ~~~pD~vI-~D~~~~-~a~~~A~~lgiP~v~~~~~~~ 142 (498)
..-||+++ .|+..- -|..=|.++|||++.++=+.+
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 34599766 665433 355778999999999875554
No 191
>PRK05748 replicative DNA helicase; Provisional
Probab=55.68 E-value=26 Score=36.46 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=38.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
--+++...|+.|--.-.+.+|...+ +. |+.|.|++.+-..+.+....+.
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~-g~~v~~fSlEms~~~l~~R~l~ 253 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKT-DKNVAIFSLEMGAESLVMRMLC 253 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHH
Confidence 3478888999999999999999876 55 8999999988766555555443
No 192
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=55.26 E-value=1e+02 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
+.+|+++|++ +|+|+++.|....
T Consensus 16 i~aL~~~l~~--~~~V~VvAP~~~q 38 (253)
T PRK13935 16 IIILAEYLSE--KHEVFVVAPDKER 38 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCC
Confidence 6678888864 6799999988744
No 193
>PHA02542 41 41 helicase; Provisional
Probab=54.43 E-value=16 Score=38.23 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=35.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASN 52 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~ 52 (498)
=|++..-|+.|--.-.+.+|....+. |+.|.|++-+-..+.+.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVIA 234 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHH
Confidence 46778889999999999999999887 99999999876554333
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=54.35 E-value=9.6 Score=34.39 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCccCHHH------------HHHHHHHHHhCCCCEEEEEEcCC
Q 041419 7 KPHICLLASPGMGHLIP------------VVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P------------~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.++|++...|++=.+.| -..||+++..+ |++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 46788887777766665 37899999999 99999999885
No 195
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=53.74 E-value=50 Score=31.61 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDD 49 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~ 49 (498)
+|+++-....|++.=...+.++|+++. +-+|++++.+.+.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~ 42 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAP 42 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHH
Confidence 589999999999999999999999983 47999999987443
No 196
>PRK09165 replicative DNA helicase; Provisional
Probab=53.46 E-value=31 Score=36.46 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=37.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhC--------------CCCEEEEEEcCCCCccccccccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAH--------------HDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r--------------~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
=+++..-|+.|--.-++.+|...+.+ .|..|.|++.+-..+.+....+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la 281 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS 281 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH
Confidence 46788889999999999999888642 16889999988766555444443
No 197
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=53.43 E-value=27 Score=36.13 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=38.2
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccccccccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
--+++...|+.|--.-.+++|..+..+.|+.|.|++.+-..+.+....+.
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~ 245 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLS 245 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHH
Confidence 34678888999999999999998775228999999998766554444443
No 198
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=53.15 E-value=39 Score=30.49 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=46.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
.++-+=..+.|-++-...|+++|++++ |+.|.+-++...-.......+.. .+....+|. +
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-----~v~~~~~P~-----------D--- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-----RVDVQYLPL-----------D--- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-----G-SEEE--------------S---
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-----CeEEEEeCc-----------c---
Confidence 344555667899999999999999874 78887777644221111111110 111111220 0
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhH-H-HHHHHhCCcEEEEe
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEA-M-DVADEFGLLKYMFI 138 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a-~-~~A~~lgiP~v~~~ 138 (498)
....++.+++.+ +||++|.--.-.|. . ..|++.|||++.+.
T Consensus 83 --------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 --------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp --------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEE
T ss_pred --------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 112456678889 99987744334443 3 68888999998765
No 199
>PRK10490 sensor protein KdpD; Provisional
Probab=53.03 E-value=38 Score=38.74 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=38.5
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASH 47 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 47 (498)
...+++|.|-..|+-|-.+-||.-|++|+++ |++|.+-.-+..
T Consensus 21 ~~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~h 63 (895)
T PRK10490 21 HRGKLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVETH 63 (895)
T ss_pred cCCcEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeCC
Confidence 3688999999999999999999999999999 999987766554
No 200
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=52.80 E-value=13 Score=37.38 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=64.9
Q ss_pred ceee-cCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCC-CCcCH
Q 041419 355 GLVV-PAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTE-SLVTR 432 (498)
Q Consensus 355 ~~~~-~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~-~~~~~ 432 (498)
+++. ....+..++|..++ ++||-- .+...|.+..++|+|....-.|.+.. ..|.-......-.+ ..-+.
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~~pg~~~~~~ 323 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEEDLPGPIVYNF 323 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTSSSS-EESSH
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhhCCCceeCCH
Confidence 4544 34557889999999 699986 56899999999999988765555522 22322221000000 12367
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 041419 433 QEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVA 481 (498)
Q Consensus 433 ~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 481 (498)
++|.++|++++.++ ..++++-++..+++-. ..+|.++.+-++.++
T Consensus 324 ~eL~~~i~~~~~~~---~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 324 EELIEAIENIIENP---DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHTTHHHHH---HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHhhhhCC---HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 99999999998763 3355556666666544 366777766666554
No 201
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=52.52 E-value=95 Score=27.17 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=28.9
Q ss_pred ccHHHHhccCCcceeeecCCcchHHH---HHhhCCcEEeccc
Q 041419 362 APQAEILAHPSVGGFLSHCGWNSTVE---SIVNGVPMIAWPL 400 (498)
Q Consensus 362 ~pq~~lL~~~~~~~~ItHgG~gs~~e---al~~GvP~v~~P~ 400 (498)
.+-..++...+...++--||.||..| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34556665555557788899998765 5889999999986
No 202
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.48 E-value=89 Score=30.82 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=65.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEE-EecCCCCCCCCCCCCCchH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNA-VTLPLANISSLVNPDASLG 86 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 86 (498)
||+++-....|++.=...+.+.|++.. +.+|++++.+.+. ..++..| .++- ..++.. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~p---~id~v~~~~~~---------~~~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCR-----PLLERMP---EIRQAIDMPLG---------HGAL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhH-----HHHhcCc---hhceeeecCCc---------ccch
Confidence 589999999999999999999999985 8899999987643 3344444 3432 222210 0000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEE
Q 041419 87 EKILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKY 135 (498)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v 135 (498)
.+. ....+...+++. ++|++|.-........++...|+|.-
T Consensus 64 -~~~-----~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 64 -ELT-----ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred -hhh-----HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 010 111233344554 89999976655556667777788754
No 203
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=52.06 E-value=1.4e+02 Score=33.35 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=99.0
Q ss_pred cEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC---------------CCCCCcccccccCCCCCcccccCC
Q 041419 280 SVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPPVE---------------NDVSGSYLTVVDNNSAGKLEDYLP 344 (498)
Q Consensus 280 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~lp 344 (498)
.++|+++=.+...+..++...++.|.+.|.+++..++.... .+.++.+++ |. +.+.++
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~T------G~-efD~ls 644 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALT------GS-EFDDLS 644 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccc------hh-hhhcCC
Confidence 47888776676677778888999999999999998876532 001111111 22 334454
Q ss_pred hhhhhhcCCCceeecCCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeecc
Q 041419 345 HGFLTRTDKVGLVVPAWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKEL 424 (498)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~ 424 (498)
++-..........+.+--||..+ -+.|+|+.-.=.+. +.+|----|--+ +++.+|+...
T Consensus 645 ~~~~~~~~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivA--MTGDGVNDApAL-K~AdIGIAMG-- 703 (972)
T KOG0202|consen 645 DEELDDAVRRVLVFARAEPQHKL----------------KIVEALQSRGEVVA--MTGDGVNDAPAL-KKADIGIAMG-- 703 (972)
T ss_pred HHHHHHHhhcceEEEecCchhHH----------------HHHHHHHhcCCEEE--ecCCCccchhhh-hhcccceeec--
Confidence 43333222222223233454432 24556555444443 356666556566 6778887753
Q ss_pred CCCCCcCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhc
Q 041419 425 PTESLVTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSL 488 (498)
Q Consensus 425 ~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 488 (498)
.-..+.-++|-.=+|.|++. . .+-+|++||.+-+.++..|+.++-...
T Consensus 704 ----~~GTdVaKeAsDMVL~DDnF----s--------tIvaAVEEGr~IynNik~Fir~~lSsn 751 (972)
T KOG0202|consen 704 ----ISGTDVAKEASDMVLADDNF----S--------TIVAAVEEGRAIYNNIKNFIRYLLSSN 751 (972)
T ss_pred ----CCccHhhHhhhhcEEecCcH----H--------HHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 23335566666777888543 2 234457889999999999999876543
No 204
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=51.27 E-value=35 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEE
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFV 43 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 43 (498)
+.-++++..+...|..-+-.+|+.|.++ |..|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 4778999999999999999999999999 99887554
No 205
>PRK06749 replicative DNA helicase; Provisional
Probab=51.18 E-value=39 Score=34.96 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=40.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAV 58 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (498)
-=|++..-|+.|--.-++.+|...+.+ |+.|.|++.+-..+.+....+..
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ql~~R~ls~ 236 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSKQLLKRMASC 236 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHHHHHHHHHHh
Confidence 347888899999999999999999988 99999999887665555454443
No 206
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=50.96 E-value=42 Score=31.11 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=29.8
Q ss_pred eEEEEcCC--CccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 9 HICLLASP--GMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 9 ~Ill~~~p--~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
+|.+++.+ +-|...-..+|+-.|+++ |+.|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecC
Confidence 45555554 679999999999999999 9999998765
No 207
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=50.93 E-value=1.5e+02 Score=28.18 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
+..|+++|++ +|+|+++.|....
T Consensus 16 l~aL~~~l~~--~~~V~VvAP~~~~ 38 (253)
T PRK13933 16 INTLAELLSK--YHEVIIVAPENQR 38 (253)
T ss_pred HHHHHHHHHh--CCcEEEEccCCCC
Confidence 6788999974 6799999988744
No 208
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.83 E-value=1.4e+02 Score=30.81 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEK 88 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (498)
|++++..+. + .+.+++.|.+- |.+|..+.+........+...+.... .++ .. ....++.
T Consensus 282 kv~v~g~~~--~---~~~la~~L~el-Gmevv~~~t~~~~~~~~~~~~~~l~~-~~~-----------~v-~~~~~~~-- 340 (416)
T cd01980 282 RVLVSGYEG--N---ELLVARLLIES-GAEVPYVSTSIPKTSLSAPDYEWLSA-LGV-----------EV-RYRKSLE-- 340 (416)
T ss_pred eEEEECCCc--h---hHHHHHHHHHc-CCEEEEEecCCCChhhhHHHHHHHHh-cCC-----------cc-ccCCCHH--
Confidence 555544443 3 56699999998 99999998874221111111110000 000 00 0011111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 89 ILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
...+.+++. +||++|.. ..+..+|+++|||.+.+.
T Consensus 341 ----------~~~~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 341 ----------DDIAAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred ----------HHHHHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 112444566 99999987 335679999999998644
No 209
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=50.52 E-value=1.7e+02 Score=28.98 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=32.6
Q ss_pred CeEEEEcC-CCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 8 PHICLLAS-PGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 8 ~~Ill~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
+||+|++. |+-|--.=..++|-.|++. |.+|.++++++-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCC
Confidence 57776665 5679999999999999999 9888888887633
No 210
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=49.80 E-value=78 Score=30.04 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 10 ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 10 Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+++..-|+.|.-.-..++|..++++ |++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCC
Confidence 4555678889999999999999999 99999999876
No 211
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=49.71 E-value=55 Score=29.22 Aligned_cols=107 Identities=11% Similarity=0.006 Sum_probs=55.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCE--EEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCch
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQ--VTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASL 85 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (498)
|||+|+..+.. .-+..+-.+|.++ +|+ +..+.+.............. ++....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~~~~~~~~~~~~~-----~~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNPDKPRGRSRAIKN-----GIPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESSTTTHHHHHHHHT-----THHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccccccccccccccC-----CCCEEeccccC-----------
Confidence 68888866665 4566667789988 887 55555444222100000111 11111111000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC-chhHHHHHHHhCCcEEEEecc
Q 041419 86 GEKILVLMHKSLPALRSAISAMKFRPTALIVDFF-GTEAMDVADEFGLLKYMFIAS 140 (498)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-~~~a~~~A~~lgiP~v~~~~~ 140 (498)
+ .......+.+.+.++++ +||++|+-.+ ..-...+-......++-++++
T Consensus 61 ---~-~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ---F-QPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ---S-SSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ---C-CchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 00122344677788888 9999886543 334446667778888877754
No 212
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.69 E-value=76 Score=29.61 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCcEEEEEccCC---CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCC
Q 041419 278 SQSVIYVSFGSG---GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKV 354 (498)
Q Consensus 278 ~~~vV~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 354 (498)
+++.|.+..|+. ..++.+...++++.|.+.+.+++...+... .....-+.+......+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-------------------~~~~~~~~~~~~~~~~ 164 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-------------------QEKEIADQIAAGLQNP 164 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-------------------HHHHHHHHHHTTHTTT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-------------------HHHHHHHHHHHhcccc
Confidence 455777777775 456788899999999887766544432210 0001101111112111
Q ss_pred ceeecCC--cc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 355 GLVVPAW--AP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 355 ~~~~~~~--~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
.+.+.+- +. ...++.+++ ++|+.- .|.++=|.+.|+|+|++
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~--~~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRAD--LVIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSS--EEEEES-SHHHHHHHHTT--EEEE
T ss_pred eEeecCCCCHHHHHHHHhcCC--EEEecC-ChHHHHHHHHhCCEEEE
Confidence 2333222 33 357888888 788875 57899999999999998
No 213
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=49.16 E-value=47 Score=34.46 Aligned_cols=79 Identities=8% Similarity=0.060 Sum_probs=56.8
Q ss_pred ceeecCCcc--HHHHhccCCcceeeecCCc--chHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCc
Q 041419 355 GLVVPAWAP--QAEILAHPSVGGFLSHCGW--NSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLV 430 (498)
Q Consensus 355 ~~~~~~~~p--q~~lL~~~~~~~~ItHgG~--gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~ 430 (498)
.++..++.+ -.+++..+++-+-|.||.- .++.||+.+|+|++..=...... ..+ .. |...+ .-
T Consensus 330 vvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~~------~~ 396 (438)
T TIGR02919 330 VKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIFE------HN 396 (438)
T ss_pred cEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Cceec------CC
Confidence 344556676 3588999998888899774 79999999999999874433222 233 23 44433 34
Q ss_pred CHHHHHHHHHHHhcCC
Q 041419 431 TRQEIEMLVRKIMVDK 446 (498)
Q Consensus 431 ~~~~l~~al~~vl~~~ 446 (498)
+.+++.++|+++|.|+
T Consensus 397 ~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 397 EVDQLISKLKDLLNDP 412 (438)
T ss_pred CHHHHHHHHHHHhcCH
Confidence 6799999999999983
No 214
>PRK14099 glycogen synthase; Provisional
Probab=49.06 E-value=26 Score=36.94 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=39.2
Q ss_pred cCCcceeee---cCCcc-hHHHHHhhCCcEEeccccc--cchhhHHHHhhh--hcceEEeeccCCCCCcCHHHHHHHHHH
Q 041419 370 HPSVGGFLS---HCGWN-STVESIVNGVPMIAWPLHA--EQKMNATMLTEE--IGVAFRSKELPTESLVTRQEIEMLVRK 441 (498)
Q Consensus 370 ~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~--~GvG~~~~~~~~~~~~~~~~l~~al~~ 441 (498)
.++ +||. +=|.| +.+||+++|+|.|+.-..+ |--.......+. -+.|..++ .-+.+++.++|.+
T Consensus 369 ~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~------~~d~~~La~ai~~ 440 (485)
T PRK14099 369 GAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS------PVTADALAAALRK 440 (485)
T ss_pred cCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC------CCCHHHHHHHHHH
Confidence 355 5664 34554 6689999998777754422 321111000011 14677764 3478999999987
Q ss_pred ---HhcC
Q 041419 442 ---IMVD 445 (498)
Q Consensus 442 ---vl~~ 445 (498)
++.|
T Consensus 441 a~~l~~d 447 (485)
T PRK14099 441 TAALFAD 447 (485)
T ss_pred HHHHhcC
Confidence 5556
No 215
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.82 E-value=1.3e+02 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.0
Q ss_pred HHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 364 QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 364 q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
...++.+++ ++|+.-. |.++-|.+.|+|+|++
T Consensus 192 ~~~li~~~~--l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 192 LAALLARAD--LVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHhCC--EEEeeCC-HHHHHHHHcCCCEEEE
Confidence 457778888 7998854 7788888999999987
No 216
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.60 E-value=99 Score=26.90 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCcccc--cccccCCCCCCCe-EEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHHH
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHDDASN--SNVHAVPNNNNLF-NAVTLPLANISSLVNPDASLGEKILVLMHKSLPAL 100 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~--~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (498)
++..|++|++..|.+|+.++.....+... +..+..+ +. +.+.+..+...+. ........+
T Consensus 20 ~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~----G~d~v~~~~~~~~~~~-------------~~~~~a~~l 82 (164)
T PF01012_consen 20 ALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY----GADKVYHIDDPALAEY-------------DPEAYADAL 82 (164)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST----TESEEEEEE-GGGTTC--------------HHHHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc----CCcEEEEecCcccccc-------------CHHHHHHHH
Confidence 68899999987678888877653121110 1112222 32 2333332221111 112234456
Q ss_pred HHHHHhcCCCCcEEEeCCCchh---HHHHHHHhCCcEEEEe
Q 041419 101 RSAISAMKFRPTALIVDFFGTE---AMDVADEFGLLKYMFI 138 (498)
Q Consensus 101 ~~~l~~~~~~pD~vI~D~~~~~---a~~~A~~lgiP~v~~~ 138 (498)
.+++++. +||+|+.-..... +..+|.+||.|++.-.
T Consensus 83 ~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 83 AELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp HHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 6777777 9999997764442 4479999999998743
No 217
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=48.29 E-value=1.9e+02 Score=28.87 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=59.1
Q ss_pred cee-ecCCcc---HHHHhccCCcceeeec--CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCC
Q 041419 355 GLV-VPAWAP---QAEILAHPSVGGFLSH--CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTES 428 (498)
Q Consensus 355 ~~~-~~~~~p---q~~lL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~ 428 (498)
++. ..+++| +.++|..++++.|.|. =|.|+++-.|++|+|.++- -+=+.+- -+ ++.|+-+.-. +.
T Consensus 246 ~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~-~l-~~~~ipVlf~----~d 316 (360)
T PF07429_consen 246 NFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQ-DL-KEQGIPVLFY----GD 316 (360)
T ss_pred ceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHH-HH-HhCCCeEEec----cc
Confidence 454 345666 5678889998777775 4899999999999999875 4444444 44 3557766543 36
Q ss_pred CcCHHHHHHHHHHHhc
Q 041419 429 LVTRQEIEMLVRKIMV 444 (498)
Q Consensus 429 ~~~~~~l~~al~~vl~ 444 (498)
.++...|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7999999999887764
No 218
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=48.19 E-value=65 Score=33.26 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=53.4
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
.|+.++..+.. .+.+++.|.+- |.+|..+++........+...+. +.... ... ..+.++
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~~-----------~~~~~-~~v-~~~~dl-- 344 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAIPRTAWGAEDKRW-----------LEMLG-VEV-KYRASL-- 344 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCCCCccccHHHHHH-----------HHhcC-CCc-eeccCH--
Confidence 36666666655 88899999998 99999987764211100000000 00000 000 111111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
. +.+ +.+++. +||++|... -...+|+++|||.+.+.
T Consensus 345 --~-------~~~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 345 --E-------DDM-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred --H-------HHH-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 1 111 344566 999999883 34578999999998643
No 219
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.16 E-value=18 Score=37.71 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=41.5
Q ss_pred hHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcCCcchHHHHHH
Q 041419 384 STVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVDKEGHSSIRVR 455 (498)
Q Consensus 384 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~~~~~ 455 (498)
++.||+++|.|++.. ++..=+.-+ +..--|..+++ +.-....+++++.++..|++.+..+.++
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp----~~e~~~~~a~~~~kl~~~p~l~~~~~~~ 443 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDP----GQEAVAELADALLKLRRDPELWARMGKN 443 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCC----chHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 889999999999987 444444444 35456676652 2222237999999999995544444433
No 220
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=47.94 E-value=37 Score=35.46 Aligned_cols=119 Identities=10% Similarity=0.172 Sum_probs=55.3
Q ss_pred CccCHHHHHHHHHHHHhC-------CCCE----EEEEEcC--CCCcccccccccCCCCCCCeEEEecCCCCCCCCCC---
Q 041419 17 GMGHLIPVVELGKRLVAH-------HDVQ----VTVFVVA--SHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVN--- 80 (498)
Q Consensus 17 ~~GHv~P~l~LA~~L~~r-------~Gh~----Vt~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--- 80 (498)
+.|.+-=.+.+|++|.+. -|.+ |.++|-- .....-+..-++......+...+.+|+....+.+.
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 457777788999888642 0443 5555521 11101111122222222356667777644322111
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC--chhHHHHHHHhCCcEEEEe
Q 041419 81 PDASLGEKILVLMHKSLPALRSAISAMKFRPTALIVDFF--GTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~--~~~a~~~A~~lgiP~v~~~ 138 (498)
...++...+..+... ....+.+++..+||+|+..+. ...|..+++++|||.....
T Consensus 375 srf~lWPyLe~fa~d---~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 375 SRFDLWPYLEEFADD---AEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp -GGG-GGGHHHHHHH---HHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred chhhchhhHHHHHHH---HHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 112222223333222 233444454568999997752 3345689999999987543
No 221
>PRK07004 replicative DNA helicase; Provisional
Probab=47.49 E-value=46 Score=34.80 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=37.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHH-hCCCCEEEEEEcCCCCccccccccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLV-AHHDVQVTVFVVASHDDASNSNVHA 57 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (498)
=|++..-|+.|--.-++.+|..++ +. |+.|.|++.+-..+.+....+.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~-~~~v~~fSlEM~~~ql~~R~la 263 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPGTQLAMRMLG 263 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHH
Confidence 378888999999999999999876 45 8999999988766554444443
No 222
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=47.30 E-value=1.1e+02 Score=32.96 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=21.9
Q ss_pred cceeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 373 VGGFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 373 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33678777755 7899999999999995
No 223
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=46.64 E-value=65 Score=24.89 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCcEEEeCCC---------chhHHHHHHHhCCcEE
Q 041419 100 LRSAISAMKFRPTALIVDFF---------GTEAMDVADEFGLLKY 135 (498)
Q Consensus 100 l~~~l~~~~~~pD~vI~D~~---------~~~a~~~A~~lgiP~v 135 (498)
+.+.++.- ++|+||.... ...-...|...+||++
T Consensus 47 i~~~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 44555554 8999997532 1223367899999986
No 224
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=45.17 E-value=2.3e+02 Score=25.93 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=50.6
Q ss_pred HHhccCCcceeeecCCcchH-----HHHHhhCCcEEec--cccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHH
Q 041419 366 EILAHPSVGGFLSHCGWNST-----VESIVNGVPMIAW--PLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEML 438 (498)
Q Consensus 366 ~lL~~~~~~~~ItHgG~gs~-----~eal~~GvP~v~~--P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~a 438 (498)
..+..+. ++|..-|...+ .+|-..|+|+-++ |-..| +.+-+.+ ++-++-+.+....+ .-.-...|++.
T Consensus 65 ~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~-sP~la~~lr~~ 139 (205)
T TIGR01470 65 DILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGA-APVLARLLRER 139 (205)
T ss_pred HHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCC-CcHHHHHHHHH
Confidence 3455555 57777666533 3344567877444 22222 2223333 23233333321000 11224678888
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHhh
Q 041419 439 VRKIMVDKEGHSSIRVRAMELKYGAQKAT 467 (498)
Q Consensus 439 l~~vl~~~~~~~~~~~~a~~l~~~~~~a~ 467 (498)
|++.+. +++ ..+-+...++++.+++..
T Consensus 140 ie~~l~-~~~-~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 140 IETLLP-PSL-GDLATLAATWRDAVKKRL 166 (205)
T ss_pred HHHhcc-hhH-HHHHHHHHHHHHHHHhhC
Confidence 988885 344 677888888888877653
No 225
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=44.94 E-value=1e+02 Score=28.58 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=35.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSN 54 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (498)
-+++...|+.|--.-.++++..+..+.|+.|.|++.+...+.+...
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 4577778899999999999888766448999999998766544443
No 226
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=44.78 E-value=3.2e+02 Score=26.92 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=52.8
Q ss_pred cHHHHhccCCcceeeec--CCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHH
Q 041419 363 PQAEILAHPSVGGFLSH--CGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVR 440 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~ 440 (498)
.+.++|++++++.|+|+ =|.||++-.+++|||.++- -+=+.|.... +.|+-+-.+ +..++...++++=+
T Consensus 219 eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~----~d~L~~~~v~e~~r 289 (322)
T PRK02797 219 DYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFT----GDDLDEDIVREAQR 289 (322)
T ss_pred HHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEec----CCcccHHHHHHHHH
Confidence 46788999999888876 4899999999999999986 4445555543 557776444 26678888877755
Q ss_pred HHh
Q 041419 441 KIM 443 (498)
Q Consensus 441 ~vl 443 (498)
++.
T Consensus 290 ql~ 292 (322)
T PRK02797 290 QLA 292 (322)
T ss_pred HHH
Confidence 443
No 227
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=44.64 E-value=11 Score=29.62 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCC-CCCCCCchHHHHHHHHHHhhHHHHH
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISS-LVNPDASLGEKILVLMHKSLPALRS 102 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (498)
++.+|+.|.+. |++ ++.++.....+.+. ++....+-.....+ . +.+. . .+.+
T Consensus 2 ~~~~a~~l~~l-G~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~-~~g~-----~---------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFE--IYATEGTAKFLKEH---------GIEVTEVVNKIGEGES-PDGR-----V---------QIMD 54 (95)
T ss_dssp HHHHHHHHHHT-TSE--EEEEHHHHHHHHHT---------T--EEECCEEHSTG-G-GTHC-----H---------HHHH
T ss_pred HHHHHHHHHHC-CCE--EEEChHHHHHHHHc---------CCCceeeeeecccCcc-CCch-----h---------HHHH
Confidence 57899999999 965 45555433333333 45433222100000 0 0000 0 5666
Q ss_pred HHHhcCCCCcEEEeCCCchh---------HHHHHHHhCCcEE
Q 041419 103 AISAMKFRPTALIVDFFGTE---------AMDVADEFGLLKY 135 (498)
Q Consensus 103 ~l~~~~~~pD~vI~D~~~~~---------a~~~A~~lgiP~v 135 (498)
.+++- +.|+||..+.... -..+|...+||++
T Consensus 55 ~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 66666 8999997652221 2368888999986
No 228
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.59 E-value=1.1e+02 Score=27.93 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=54.2
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCC-CCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchH
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHH-DVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLG 86 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (498)
|||+++..+..+-+. +|.+.+.+.. +++|.++.+...... ....... .++.+..++.....+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~-~~~~a~~----~gIp~~~~~~~~~~~--------- 64 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAY-GLERAEA----AGIPTFVLDHKDFPS--------- 64 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccch-HHHHHHH----cCCCEEEECccccCc---------
Confidence 789999888766555 4555676651 377887655532111 1111121 155554433111100
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC-chhHHHHHHHhCCcEEEEec
Q 041419 87 EKILVLMHKSLPALRSAISAMKFRPTALIVDFF-GTEAMDVADEFGLLKYMFIA 139 (498)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-~~~a~~~A~~lgiP~v~~~~ 139 (498)
-....+.+.+.++++ +||++|+-.+ ..-...+-....-.++-+++
T Consensus 65 ------~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 65 ------REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred ------hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 011123556677788 9999986432 22223444444455665553
No 229
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=44.58 E-value=72 Score=30.42 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCccHHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 360 AWAPQAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 360 ~~~pq~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
++-|+.+.|+.++- .++|---.|-..||.+.|+|+-+.
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45689999998884 556666678899999999998664
No 230
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=44.54 E-value=2.1e+02 Score=27.14 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
+..|+++|++. |+|+++.|....
T Consensus 16 i~aL~~~l~~~--~~V~VvAP~~~q 38 (250)
T PRK00346 16 IRALAEALREL--ADVTVVAPDRER 38 (250)
T ss_pred HHHHHHHHHhC--CCEEEEeCCCCC
Confidence 66889999986 589999988744
No 231
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=44.40 E-value=2.3e+02 Score=26.92 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=29.3
Q ss_pred CCCeEEEEcC--CCccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 6 LKPHICLLAS--PGMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 6 ~~~~Ill~~~--p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
...+++.++. |+.|--.=.+.||..|++. |++|.++=..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~-g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQL-GEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 3455555444 4668888889999999998 9999998543
No 232
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=44.23 E-value=81 Score=35.14 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=64.1
Q ss_pred eecCCccHHH---HhccCCcceeeec---CCcc-hHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCC
Q 041419 357 VVPAWAPQAE---ILAHPSVGGFLSH---CGWN-STVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESL 429 (498)
Q Consensus 357 ~~~~~~pq~~---lL~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~ 429 (498)
.+.+++++.+ ++..+++ |+.- -|.| ++.|++++|+|-..+|+..+--.-+..+ .-|+.+++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC------
Confidence 3446777764 5556774 4432 3554 7889999987622222222211112222 22666642
Q ss_pred cCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhh
Q 041419 430 VTRQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKS 487 (498)
Q Consensus 430 ~~~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 487 (498)
.+.++++++|.++|+.++ ++.+++.+++++.+. .-+...-++.|++.+...
T Consensus 413 ~d~~~la~ai~~~l~~~~--~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPE--EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 478999999999998643 334444455544432 345666677777766654
No 233
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=43.97 E-value=1.2e+02 Score=32.89 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.4
Q ss_pred cceeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 373 VGGFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 373 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
.+++++|.|-| .+.+|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44788888855 7788999999999996
No 234
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=43.89 E-value=31 Score=31.11 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=33.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+||++.-.|+.|=+.-.+.+.++|.+. |++|+++.++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 468888888888888778999999999 99999999876
No 235
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.92 E-value=51 Score=32.68 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=32.1
Q ss_pred HHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchh------H----HHHHHHhCCcEEE
Q 041419 90 LVLMHKSLPALRSAISAMKFRPTALIVDFFGTE------A----MDVADEFGLLKYM 136 (498)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~------a----~~~A~~lgiP~v~ 136 (498)
....+.....+.+.++++ +||++|+.+.+.. + ..+.++++||.++
T Consensus 62 ~en~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 62 NENKEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred hhCHHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 344455666788888888 9999999874332 1 1466789999986
No 236
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.22 E-value=52 Score=30.01 Aligned_cols=40 Identities=18% Similarity=0.012 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.+.+|++.+.++-.|-....=++..|++. |++|++++..-
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~ 120 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDV 120 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 46799999999999999999999999998 99999887543
No 237
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=42.10 E-value=22 Score=36.27 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=57.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCCEEEEE-EcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHH
Q 041419 16 PGMGHLIPVVELGKRLVAHHDVQVTVF-VVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMH 94 (498)
Q Consensus 16 p~~GHv~P~l~LA~~L~~r~Gh~Vt~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (498)
-+.|-..-.+.|.++|++| |++|.=+ +.|.+++.-.+..+...+ . .++ + .+ +|
T Consensus 10 SG~GKTTvT~glm~aL~~r-g~~VqpfKvGPDYIDP~~H~~atG~~---s-----------rNL-D--------~~-mm- 63 (451)
T COG1797 10 SGSGKTTVTLGLMRALRRR-GLKVQPFKVGPDYIDPGYHTAATGRP---S-----------RNL-D--------SW-MM- 63 (451)
T ss_pred CCCcHHHHHHHHHHHHHhc-CCcccccccCCCccCchhhhHhhCCc---c-----------CCC-c--------hh-hc-
Confidence 3568999999999999999 9999754 455555542222121111 0 111 0 01 11
Q ss_pred HhhHHHHHHHHhcCCCCcEEEeC-------C-----CchhHHHHHHHhCCcEEEEecchHH
Q 041419 95 KSLPALRSAISAMKFRPTALIVD-------F-----FGTEAMDVADEFGLLKYMFIASNAW 143 (498)
Q Consensus 95 ~~~~~l~~~l~~~~~~pD~vI~D-------~-----~~~~a~~~A~~lgiP~v~~~~~~~~ 143 (498)
..+.++.++.+-....|+.|.+ - -..+...+|+.+|+|++.+.-....
T Consensus 64 -~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~ 123 (451)
T COG1797 64 -GEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGL 123 (451)
T ss_pred -CHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcch
Confidence 1133444444434455555533 1 1345679999999999987655443
No 238
>PLN02470 acetolactate synthase
Probab=41.60 E-value=1.8e+02 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=23.9
Q ss_pred CcceeeecCCcc------hHHHHHhhCCcEEeccc
Q 041419 372 SVGGFLSHCGWN------STVESIVNGVPMIAWPL 400 (498)
Q Consensus 372 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P~ 400 (498)
..+++++|.|-| .+.+|...++|||++.-
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 455788888865 78899999999999953
No 239
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.04 E-value=2.6e+02 Score=24.87 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=56.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEE---EcC-CCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVF---VVA-SHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDAS 84 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~---~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (498)
-|.+++..+.|-..-.+.+|-+...+ |++|.++ =.. ..-+ ...++.. ++.+......... .. .+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE---~~~l~~~----~~~~~~~g~g~~~---~~-~~ 74 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGE---RAAFEPH----GVEFQVMGTGFTW---ET-QN 74 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccCh---HHHHHhc----CcEEEECCCCCee---cC-CC
Confidence 57788889999999999999999998 9999655 332 1111 1112221 4566555432111 11 11
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch
Q 041419 85 LGEKILVLMHKSLPALRSAISAMKFRPTALIVDFFGT 121 (498)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 121 (498)
.... ............+.+.+- .+|+||.|-...
T Consensus 75 ~~~~-~~~~~~~~~~a~~~l~~~--~~DlvVLDEi~~ 108 (173)
T TIGR00708 75 READ-TAIAKAAWQHAKEMLADP--ELDLVLLDELTY 108 (173)
T ss_pred cHHH-HHHHHHHHHHHHHHHhcC--CCCEEEehhhHH
Confidence 1111 123344445555555544 899999997443
No 240
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.80 E-value=39 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=34.8
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDAS 51 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (498)
+||++...|+.|=+. ...+.+.|+++ |++|.++.++.-...+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChhHHHHc
Confidence 578888888887776 89999999999 9999999988744443
No 241
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.24 E-value=1.7e+02 Score=30.66 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEE
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYM 136 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~ 136 (498)
++.+.+++. +||++|.. .....+|+++|||++.
T Consensus 384 e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 445556666 89999997 4455889999999974
No 242
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=40.04 E-value=2.8e+02 Score=24.99 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=53.3
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCC--EEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCch
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDV--QVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASL 85 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (498)
|||+++..+..+-+.+ |.+.+.+. ++ +|.++.+....... ....... ++.+..++... + ..
T Consensus 1 ~riail~sg~gs~~~~---ll~~~~~~-~l~~~I~~vi~~~~~~~~-~~~A~~~----gip~~~~~~~~---~-~~---- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA---IIDACKEG-KIPASVVLVISNKPDAYG-LERAAQA----GIPTFVLSLKD---F-PS---- 63 (190)
T ss_pred CeEEEEEcCCChhHHH---HHHHHHcC-CCCceEEEEEECCccchH-HHHHHHc----CCCEEEECccc---c-Cc----
Confidence 5788888877766654 55566665 44 67766555321110 0111111 45444332111 1 00
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC-chhHHHHHHHhCCcEEEEe
Q 041419 86 GEKILVLMHKSLPALRSAISAMKFRPTALIVDFF-GTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-~~~a~~~A~~lgiP~v~~~ 138 (498)
.+...+.+.+.++++ +||++|+-.+ ..-...+-......++-++
T Consensus 64 -------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 64 -------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred -------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 011124566777888 9999886533 3333344455555566555
No 243
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=39.95 E-value=3e+02 Score=26.33 Aligned_cols=98 Identities=11% Similarity=-0.017 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCC--CCEEEEEEcCCCCcccccccccC-CCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHHH
Q 041419 24 VVELGKRLVAHH--DVQVTVFVVASHDDASNSNVHAV-PNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPAL 100 (498)
Q Consensus 24 ~l~LA~~L~~r~--Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (498)
+.+|+++|.+.. |++|+++.|..... +... ......+++..+.. +.+. -......+..+ .+
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqS-----g~ghaiT~~~pl~~~~~~~----~~ya-v~GTPaDCV~l------al 79 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQS-----GVGHCISYTHPMMIAELGP----RRFA-AEGSPADCVLA------AL 79 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCC-----CCcccccCCCCeEEEEeCC----CeEE-EcCchHHHHHH------HH
Confidence 345666665520 48999999887443 3322 12223455544431 1100 01111122111 12
Q ss_pred HHHHHhcCCCCcEEEeCC----------Cch---hHHHHHHHhCCcEEEEec
Q 041419 101 RSAISAMKFRPTALIVDF----------FGT---EAMDVADEFGLLKYMFIA 139 (498)
Q Consensus 101 ~~~l~~~~~~pD~vI~D~----------~~~---~a~~~A~~lgiP~v~~~~ 139 (498)
..++.. .+||+||... ++. +|+.-|..+|||.+.++.
T Consensus 80 ~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 223321 3799999642 222 334556668999998874
No 244
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.30 E-value=1.2e+02 Score=31.28 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+.|+||++-.+++-| +|++.|++. ++...+++.|.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEECC
Confidence 458999999999887 689999988 76555555554
No 245
>PRK08322 acetolactate synthase; Reviewed
Probab=39.21 E-value=98 Score=33.08 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=22.4
Q ss_pred cceeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 373 VGGFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 373 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44788887755 7899999999999995
No 246
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=39.00 E-value=2e+02 Score=25.72 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=27.2
Q ss_pred cHHHHhccCCcceeeecCCcchHHHHHh---------hCCcEEeccc
Q 041419 363 PQAEILAHPSVGGFLSHCGWNSTVESIV---------NGVPMIAWPL 400 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItHgG~gs~~eal~---------~GvP~v~~P~ 400 (498)
....+|-..+-.+++--||.||.-|.+. +.+|.+++=.
T Consensus 88 ~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~ 134 (178)
T TIGR00730 88 ERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNV 134 (178)
T ss_pred HHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECC
Confidence 3445555555557888899999998743 4899998753
No 247
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.83 E-value=50 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+.++||++.+.+..||=.-.--++..|+.. |.+|...+.-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcC
Confidence 478999999999999999999999999999 99998876544
No 248
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.75 E-value=59 Score=29.56 Aligned_cols=45 Identities=16% Similarity=-0.033 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcc
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDA 50 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 50 (498)
.++.+|++.+.++-.|-....-++..|+.+ |++|++++..--.+.
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~vp~e~ 126 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDVPIDT 126 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCCCHHH
Confidence 345799999999999999999999999998 999999987654433
No 249
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.34 E-value=38 Score=31.70 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=27.8
Q ss_pred CeEEEEcCCCccCHHH------------HHHHHHHHHhCCCCEEEEEEcC
Q 041419 8 PHICLLASPGMGHLIP------------VVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P------------~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
|+|++.+.|+.=.+.| -.+||++|.++ ||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhC-CCEEEEEECc
Confidence 5677777776655554 26789999999 9999999744
No 250
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=38.13 E-value=1.4e+02 Score=28.54 Aligned_cols=25 Identities=12% Similarity=-0.025 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 22 IPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 22 ~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
.=+..|+++|++. | +|+++.|....
T Consensus 14 pGi~aL~~al~~~-g-~V~VvAP~~eq 38 (266)
T PRK13934 14 PGLRLLYEFVSPL-G-EVDVVAPETPK 38 (266)
T ss_pred HHHHHHHHHHHhC-C-cEEEEccCCCC
Confidence 3467899999988 7 89999888743
No 251
>PRK06849 hypothetical protein; Provisional
Probab=38.11 E-value=61 Score=32.89 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|+.+++|+++-. ...-.+.+++.|.++ ||+|..+....
T Consensus 1 ~~~~~~VLI~G~----~~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGA----RAPAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCC----CcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 356788888742 333689999999999 99999997654
No 252
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=37.93 E-value=1e+02 Score=30.28 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=24.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|||+|+-.+..+ +...++|.++ ||+|..+.+..
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~-~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRED-NFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCcEEEEEcCC
Confidence 688888555443 6667888888 99998777654
No 253
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.93 E-value=1.6e+02 Score=30.70 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=59.9
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC-CcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchH
Q 041419 9 HICLLAS-PGMGHLIPVVELGKRLVAHHDVQVTVFVVASH-DDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLG 86 (498)
Q Consensus 9 ~Ill~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (498)
+|++... ...|--.-...|++.|+++ |++|..+=+... .+. ....... +. +. .++ ...
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~Gpd~~d~---~~~~~~~---g~-----~~---~~l-d~~---- 64 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVGPDYIDP---AYHTAAT---GR-----PS---RNL-DSW---- 64 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecCCCcccH---HHHHHHh---CC-----Cc---ccC-Cce----
Confidence 4555533 3468999999999999999 999988865321 111 0000000 00 00 011 000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC------------chhHHHHHHHhCCcEEEEecc
Q 041419 87 EKILVLMHKSLPALRSAISAMKFRPTALIVDFF------------GTEAMDVADEFGLLKYMFIAS 140 (498)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~------------~~~a~~~A~~lgiP~v~~~~~ 140 (498)
....+.+...++++..+.|++|++-. ......+|+.++.|++.+...
T Consensus 65 -------~~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~ 123 (451)
T PRK01077 65 -------MMGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDA 123 (451)
T ss_pred -------eCCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECC
Confidence 00123455555555557899886432 123568999999999988653
No 254
>PRK14098 glycogen synthase; Provisional
Probab=37.86 E-value=52 Score=34.71 Aligned_cols=36 Identities=3% Similarity=0.169 Sum_probs=28.6
Q ss_pred CeEEEEcC--------CCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLAS--------PGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~--------p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|+|++++. |+-|++ .-.|.++|+++ ||+|.++.|-.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADF--MASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHH--HHHHHHHHHHC-CCeEEEEcCCC
Confidence 99999874 344444 56789999999 99999999854
No 255
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.81 E-value=50 Score=27.31 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=34.4
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASH 47 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 47 (498)
||++.+.++-.|-.-..-++..|+.. |++|.+.....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCCC
Confidence 68999999999999999999999998 999999987643
No 256
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=36.79 E-value=2.4e+02 Score=29.39 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEE
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMF 137 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~ 137 (498)
.++.+.+++. +||++|.. .....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~--~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY--KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc--CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 4566677777 89999976 33467889999999864
No 257
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.65 E-value=1.1e+02 Score=27.50 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=44.7
Q ss_pred CCCe-EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc--ccccccccCCCCCCCeEEEecCC
Q 041419 6 LKPH-ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD--ASNSNVHAVPNNNNLFNAVTLPL 72 (498)
Q Consensus 6 ~~~~-Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~ 72 (498)
.+.+ |+|+..++.-|--=+..+++.|++. |.+|.+++-....+ ...+...+..+...+-+|+++|.
T Consensus 106 ~~~rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~ 174 (187)
T cd01452 106 QKQRIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPP 174 (187)
T ss_pred CcceEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCC
Confidence 3346 7888888777776677999999998 99988888654322 22334455555444577777764
No 258
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.52 E-value=2.5e+02 Score=28.72 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEE
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMF 137 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~ 137 (498)
++.+.+++. +||++|.... ...+|+++|||++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 455667777 8999998843 347899999999743
No 259
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=35.42 E-value=49 Score=29.50 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=28.7
Q ss_pred eEEEEcCCCccCHHH-HHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 9 HICLLASPGMGHLIP-VVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P-~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
||++.-.++ ||... .+.+.+.|+++.||+|.++.++.-.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 344544554 77766 8899999985449999999988744
No 260
>PRK12342 hypothetical protein; Provisional
Probab=35.42 E-value=54 Score=31.20 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchh------HHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTE------AMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~------a~~~A~~lgiP~v~~~ 138 (498)
.+...+++. .||+|++...+.. +..+|+.||+|++++.
T Consensus 100 ~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 100 ALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred HHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 456666776 7999997654432 4589999999999755
No 261
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=35.38 E-value=1.5e+02 Score=28.97 Aligned_cols=135 Identities=11% Similarity=0.007 Sum_probs=72.8
Q ss_pred cEE-EEEccCC--CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCce
Q 041419 280 SVI-YVSFGSG--GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVGL 356 (498)
Q Consensus 280 ~vV-~vs~GS~--~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 356 (498)
+.| ++-.||. ..++.+...++++.+.+.+.++++..+.... ...-+.+.+... ++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e--------------------~~~~~~i~~~~~--~~ 236 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE--------------------EQRAKRLAEGFP--YV 236 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH--------------------HHHHHHHHccCC--cc
Confidence 344 3444444 3467788888888887667776554333211 001112211111 12
Q ss_pred eecC--CccH-HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcce-EEeeccC-CCCCcC
Q 041419 357 VVPA--WAPQ-AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVA-FRSKELP-TESLVT 431 (498)
Q Consensus 357 ~~~~--~~pq-~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG-~~~~~~~-~~~~~~ 431 (498)
.+.+ .+.+ ..++.+++ ++|+.- .|.++=|.+.|+|.|.+=-..|...++-. |-. ..+.+.. --..++
T Consensus 237 ~l~g~~sL~elaali~~a~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~-----~~~~~~~~~~~~cm~~I~ 308 (322)
T PRK10964 237 EVLPKLSLEQVARVLAGAK--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGY-----GKNQHACRSPGKSMADLS 308 (322)
T ss_pred eecCCCCHHHHHHHHHhCC--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCC-----CCCceeecCCCcccccCC
Confidence 2222 2333 57888888 799875 58999999999999998432232211111 100 0111000 014678
Q ss_pred HHHHHHHHHHHhc
Q 041419 432 RQEIEMLVRKIMV 444 (498)
Q Consensus 432 ~~~l~~al~~vl~ 444 (498)
++.+-++++++|.
T Consensus 309 ~e~V~~~~~~~l~ 321 (322)
T PRK10964 309 AETVFQKLETLIS 321 (322)
T ss_pred HHHHHHHHHHHhh
Confidence 8999888888763
No 262
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.34 E-value=1.2e+02 Score=24.67 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHHHHhhHH
Q 041419 20 HLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLMHKSLPA 99 (498)
Q Consensus 20 Hv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (498)
+=.=++.+|+.|.+. |+++ + .++.....+.+. ++....+... +.+ ..+.
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i-~-AT~gTa~~L~~~---------Gi~~~~v~~~------~~~-------------g~~~ 58 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL-F-ATGGTSRVLADA---------GIPVRAVSKR------HED-------------GEPT 58 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE-E-ECcHHHHHHHHc---------CCceEEEEec------CCC-------------CCcH
Confidence 345578999999998 9888 3 444433222222 4443332211 110 2345
Q ss_pred HHHHHHh-cCCCCcEEEeCC--Cc--------hhHHHHHHHhCCcEEE
Q 041419 100 LRSAISA-MKFRPTALIVDF--FG--------TEAMDVADEFGLLKYM 136 (498)
Q Consensus 100 l~~~l~~-~~~~pD~vI~D~--~~--------~~a~~~A~~lgiP~v~ 136 (498)
+.+.+++ - ++|+||.-. .. +.-...|-..|||+++
T Consensus 59 i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 59 VDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 5556655 5 899999632 11 1223678899999985
No 263
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=34.88 E-value=66 Score=30.69 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCcEEEeCCCch------hHHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGT------EAMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~------~a~~~A~~lgiP~v~~~ 138 (498)
.+...+++. .||+|++...+. -+..+|+.||+|++++.
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v 146 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGV 146 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeE
Confidence 456667776 799999765443 34589999999999765
No 264
>PRK05920 aromatic acid decarboxylase; Validated
Probab=34.86 E-value=58 Score=29.87 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD 49 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 49 (498)
.+||++.-.|+.+= +=.+.+.+.|++. ||+|+++.++.-..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~-g~~V~vi~T~~A~~ 43 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAA-DYEVHLVISKAAQK 43 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHC-CCEEEEEEChhHHH
Confidence 47788887776665 6889999999999 99999999887443
No 265
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=34.72 E-value=1.4e+02 Score=28.47 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.--+++.-.|+.|--.-.++++...+++ |..|.|++.+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 3446777778999999999999998888 99999999885
No 266
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=34.70 E-value=54 Score=29.55 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=33.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHh-CCCCEEEEEEcCCCCc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVA-HHDVQVTVFVVASHDD 49 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~-r~Gh~Vt~~~~~~~~~ 49 (498)
+||++.-.|+.| .+=...|.++|.+ . ||+|.++.++.-..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~-g~~V~vv~T~~A~~ 42 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVG-EIETHLVISQAARQ 42 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhc-CCeEEEEECHHHHH
Confidence 578888888888 5559999999998 6 89999999987443
No 267
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.61 E-value=1.6e+02 Score=29.23 Aligned_cols=98 Identities=8% Similarity=0.061 Sum_probs=59.5
Q ss_pred CcEEEEEccCC---CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCCCc
Q 041419 279 QSVIYVSFGSG---GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDKVG 355 (498)
Q Consensus 279 ~~vV~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 355 (498)
++.|.+.-|+. ..++.+.+.++++.|.+.+.++++.-++... +. ..-+.+.+......
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~------------------e~-~~~~~i~~~~~~~~ 243 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD------------------DL-ACVNEIAQGCQTPP 243 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH------------------HH-HHHHHHHHhcCCCc
Confidence 45777777775 4567888889999987777776655432211 00 00011221111111
Q ss_pred -eeecCC--cc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 356 -LVVPAW--AP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 356 -~~~~~~--~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
+-..+- +. -.+++.+++ +||+.- .|-++=|.+.|+|.|++
T Consensus 244 ~~~l~g~~sL~el~ali~~a~--l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQ--LFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred cccccCCCCHHHHHHHHHhCC--EEEecC-CHHHHHHHHcCCCEEEE
Confidence 112222 33 357888888 799875 58899999999999987
No 268
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.64 E-value=86 Score=32.02 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=31.4
Q ss_pred HHHHHhhHHHHHHHHhcCCCCcEEEeCCCchh------HH----HHHHHhCCcEEEE
Q 041419 91 VLMHKSLPALRSAISAMKFRPTALIVDFFGTE------AM----DVADEFGLLKYMF 137 (498)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~------a~----~~A~~lgiP~v~~ 137 (498)
...+.....+.++++++ +||++|+.+.+.. +. .+.+++|||.++-
T Consensus 59 en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 59 ENLEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 33455556778888888 9999999874332 11 3567799998863
No 269
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=33.63 E-value=1e+02 Score=25.96 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHHhccCCcceeeecCCcchHHHHHhh----------CCcEEeccc
Q 041419 364 QAEILAHPSVGGFLSHCGWNSTVESIVN----------GVPMIAWPL 400 (498)
Q Consensus 364 q~~lL~~~~~~~~ItHgG~gs~~eal~~----------GvP~v~~P~ 400 (498)
-..+|-+.+...++.-||.||..|.... .+|++++-.
T Consensus 46 Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 46 RKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 3444444444588899999999887432 349888864
No 270
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.58 E-value=36 Score=34.57 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=64.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHH
Q 041419 10 ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKI 89 (498)
Q Consensus 10 Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 89 (498)
|++---|+.|--.=+|+++..|+++ | .|.+++.++....+. .+...+.... ++ +
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~Qik------------lRA~RL~~~~-~~-----------l 149 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIK------------LRADRLGLPT-NN-----------L 149 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHH------------HHHHHhCCCc-cc-----------e
Confidence 5666678999999999999999999 8 999999987543321 1111111000 11 1
Q ss_pred HHHHHHhhHHHHHHHHhcCCCCcEEEeCCCc----h--------------hH---HHHHHHhCCcEEEEe
Q 041419 90 LVLMHKSLPALRSAISAMKFRPTALIVDFFG----T--------------EA---MDVADEFGLLKYMFI 138 (498)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~----~--------------~a---~~~A~~lgiP~v~~~ 138 (498)
..+.+...+.+.+.+++. +||++|.|... . ++ ..+|+..||+.+.+-
T Consensus 150 ~l~aEt~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 150 YLLAETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred EEehhcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 223344455666666666 99999999411 0 11 257888999987654
No 271
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=33.49 E-value=86 Score=32.01 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHhhHHHHHHHHhcCCCCcEEEeCCCchh------HH----HHHHHhCCcEEEE
Q 041419 90 LVLMHKSLPALRSAISAMKFRPTALIVDFFGTE------AM----DVADEFGLLKYMF 137 (498)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~~------a~----~~A~~lgiP~v~~ 137 (498)
....+.....+.++++++ +||++|+.+.+.. +. .+.+++|||.++-
T Consensus 58 ~en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 58 GENLEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred hhCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 333455566778888888 9999999874332 11 3567799998863
No 272
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.36 E-value=52 Score=34.40 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCccCHHHH------------HHHHHHHHhCCCCEEEEEEcCC
Q 041419 6 LKPHICLLASPGMGHLIPV------------VELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~------------l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
..+||++...|++=.+.|. .+||+++..+ |++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 5579999999999888885 6899999999 99999999774
No 273
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.66 E-value=1.1e+02 Score=26.22 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEc
Q 041419 278 SQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVR 316 (498)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (498)
.+.+|++++||......+.++++++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 4568999999998778888899988884 3577777653
No 274
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=32.59 E-value=71 Score=27.95 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=21.4
Q ss_pred cceeeecCCcc------hHHHHHhhCCcEEeccc
Q 041419 373 VGGFLSHCGWN------STVESIVNGVPMIAWPL 400 (498)
Q Consensus 373 ~~~~ItHgG~g------s~~eal~~GvP~v~~P~ 400 (498)
.+++++|.|-| .+.+|...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33567776654 67889999999999954
No 275
>PRK09620 hypothetical protein; Provisional
Probab=32.28 E-value=65 Score=30.14 Aligned_cols=39 Identities=5% Similarity=-0.006 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCccCHHH------------HHHHHHHHHhCCCCEEEEEEcC
Q 041419 6 LKPHICLLASPGMGHLIP------------VVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P------------~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
..++|++...|+.=.+.| -..||++|.++ |++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 356788887776544444 36899999999 9999999755
No 276
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.17 E-value=94 Score=27.11 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhc-----CCCCcEEEeCCCc----------hhHHHHHHHhCCcEEEEec
Q 041419 96 SLPALRSAISAM-----KFRPTALIVDFFG----------TEAMDVADEFGLLKYMFIA 139 (498)
Q Consensus 96 ~~~~l~~~l~~~-----~~~pD~vI~D~~~----------~~a~~~A~~lgiP~v~~~~ 139 (498)
.+-.+++.+.++ ++.||+|++.... --+..+|+++|+|++-.+.
T Consensus 105 SFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 105 SFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 344566666665 6799999976421 2355789999999975443
No 277
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.67 E-value=92 Score=29.86 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=36.0
Q ss_pred eeeecCCcchHHHHHh------hCCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 375 GFLSHCGWNSTVESIV------NGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
++|+-||-||+..+++ .++|.+.+- .- .+|.. ...+.+++.+++++++++
T Consensus 38 lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN--------~G------~lGFL-------~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 38 IVISVGGDGTLLSAFHRYENQLDKVRFVGVH--------TG------HLGFY-------TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCCeEEEEe--------CC------Cceec-------ccCCHHHHHHHHHHHHcC
Confidence 8999999999999986 477887773 11 23333 345667788888888764
No 278
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=31.49 E-value=3.9e+02 Score=24.06 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCC
Q 041419 24 VVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPL 72 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 72 (498)
.-.|+..|.++ ||+|++.+.....+. -...+ .+++...++.
T Consensus 23 ve~L~~~l~~~-g~~v~Vyc~~~~~~~----~~~~y---~gv~l~~i~~ 63 (185)
T PF09314_consen 23 VEELAPRLVSK-GIDVTVYCRSDYYPY----KEFEY---NGVRLVYIPA 63 (185)
T ss_pred HHHHHHHHhcC-CceEEEEEccCCCCC----CCccc---CCeEEEEeCC
Confidence 34688889998 999999987654321 12223 3778777764
No 279
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=31.29 E-value=97 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=26.1
Q ss_pred EEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEE
Q 041419 281 VIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWV 314 (498)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (498)
.+|+++||........++....+|.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 5999999987767777888888988876533343
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=31.25 E-value=3.3e+02 Score=27.60 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=33.0
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
-+++.--|+.|--.=++++|..+.++ |..|.|++.+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~ 122 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESP 122 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCH
Confidence 35667778999999999999999998 8999999987644
No 281
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.17 E-value=1e+02 Score=30.80 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCcceeeecCCcch---HHHHHhhCCcEEec
Q 041419 371 PSVGGFLSHCGWNS---TVESIVNGVPMIAW 398 (498)
Q Consensus 371 ~~~~~~ItHgG~gs---~~eal~~GvP~v~~ 398 (498)
|+ ++|++||.=| ...|...|+|.++.
T Consensus 92 Pd--vvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 92 PD--VIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CC--EEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 56 7999999986 89999999999874
No 282
>PRK07206 hypothetical protein; Provisional
Probab=30.92 E-value=1.8e+02 Score=29.62 Aligned_cols=33 Identities=3% Similarity=0.011 Sum_probs=23.9
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
++|+++-.... ...++++++++ |+++..+....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~-G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKR-GIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHc-CCeEEEEEcCC
Confidence 35666665433 34689999999 99998888664
No 283
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=30.84 E-value=58 Score=29.23 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=30.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
||++...|+.|-+.- ..|.+.|+++ |++|.++.++.-.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~-g~~V~vv~T~~A~ 38 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEA-GVEVHLVISDWAK 38 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHC-CCEEEEEECccHH
Confidence 466777777776665 8999999999 9999999998733
No 284
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=30.75 E-value=3.1e+02 Score=28.84 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcccc
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDASN 52 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~ 52 (498)
.--+++.-.|+.|--.=.++++....++ |..|.+++.++..+.+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLL 307 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHH
Confidence 3457788888999999999999999999 99999999988765443
No 285
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=30.47 E-value=1.2e+02 Score=34.34 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhcccee
Q 041419 430 VTRQEIEMLVRKIM------VDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSLQELV 492 (498)
Q Consensus 430 ~~~~~l~~al~~vl------~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 492 (498)
.+.+.+.+.+..++ +|.+- .+-.++.+.-++.+++|+++ |.+...+++|+++++++.++++
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~l-s~A~~~Lr~AQ~aL~eAL~~-gAsdeEI~~Lm~eLR~Am~~ym 540 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDL-SDAERRLRAAQDALKDALER-GASDEEIKQLTDKLRAAMQTYM 540 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 45566666555553 45444 67788888888889998765 6777899999999999988774
No 286
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.29 E-value=88 Score=28.62 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASH 47 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~ 47 (498)
..+++|.|-..|+.|-.+-||+=|++|+++ |.+|.+..-+..
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~veth 44 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETH 44 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---T
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCC
Confidence 567999999999999999999999999999 999998876654
No 287
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.27 E-value=1.3e+02 Score=28.61 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCcEEEeCCCchhH----HHHHHHhCCcEEEEe
Q 041419 96 SLPALRSAISAMKFRPTALIVDFFGTEA----MDVADEFGLLKYMFI 138 (498)
Q Consensus 96 ~~~~l~~~l~~~~~~pD~vI~D~~~~~a----~~~A~~lgiP~v~~~ 138 (498)
..+.-.++++++ +.|+||+=...-.+ ..+|+++|||++++-
T Consensus 182 s~e~n~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 182 SKELNRALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred CHHHHHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 344557788899 99999976533322 379999999999754
No 288
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=29.97 E-value=49 Score=31.55 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=33.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDAS 51 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (498)
-+++...++.|--.-.++++..+....|+.|.|++.+...+.+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 4567777899999999999998854338999999988754433
No 289
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=29.18 E-value=1.6e+02 Score=27.04 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHHHHHHH-------
Q 041419 21 LIPVVELGKRLVAHHDVQVTVFVVASHDDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEKILVLM------- 93 (498)
Q Consensus 21 v~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 93 (498)
+.=.+.+-..+.+. |-+|.|+++......+.....+.. +..++.-. -..+.+.........+..+.
T Consensus 42 L~~A~~~i~~i~~~-~~~ILfV~t~~~~~~~v~~~a~~~----~~~yi~~r--Wi~G~LTN~~~i~~~i~~l~~l~~~~~ 114 (211)
T PF00318_consen 42 LRKALKFIKSIAKN-GGKILFVGTKPQASKIVKKFAKRT----GSFYINER--WIGGTLTNWKTIKKSIKKLKKLEKLFK 114 (211)
T ss_dssp HHHHHHHHHHHHTT-TGGEEEEECSTTHHHHHHHHHHHH----TCEEEESS---STTTTTTTTHCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHHHh----CCCccCce--ecCcccCcHHHHHHHHHHHHHHHHhhh
Confidence 33455566677777 889999999865533333322221 33343311 12233233332221111111
Q ss_pred ------HHhhHHHHHHHHhc------CCCCcEEE-eCCCc-hhHHHHHHHhCCcEEEEecchH
Q 041419 94 ------HKSLPALRSAISAM------KFRPTALI-VDFFG-TEAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 94 ------~~~~~~l~~~l~~~------~~~pD~vI-~D~~~-~~a~~~A~~lgiP~v~~~~~~~ 142 (498)
....+....+-+.+ ...||+|| .|+.. ..+..=|.++|||++.+.-+.+
T Consensus 115 ~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 115 LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 01112222222222 34699877 45433 3556778899999998875544
No 290
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.14 E-value=1e+02 Score=28.46 Aligned_cols=42 Identities=24% Similarity=0.067 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
++.+|++.+.++-.|-.-..=++..|..+ |++|.+++..--.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~ 128 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMVPI 128 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCH
Confidence 56799999999999999999999999998 9999999865433
No 291
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=28.88 E-value=1.2e+02 Score=29.45 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=37.3
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+.||-||+.++++. ++|++.+- .- .+|.. ...+.+++.++|.+++++
T Consensus 63 ~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~G------~lGFL-------~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGIN--------HG------RLGFI-------TDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEc--------CC------Ccccc-------ccCCHHHHHHHHHHHHcC
Confidence 445 79999999999999874 56766652 11 23433 346678888888888864
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=28.70 E-value=83 Score=29.24 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD 49 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 49 (498)
..--+++.-.++.|.-.-..+++....++ |..|.|++.+...+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~ 66 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSK 66 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHH
Confidence 34456777888999999999998887778 99999999986543
No 293
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=28.58 E-value=91 Score=29.75 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCCcEEE-eCCCch-hHHHHHHHhCCcEEEEecchH
Q 041419 109 FRPTALI-VDFFGT-EAMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 109 ~~pD~vI-~D~~~~-~a~~~A~~lgiP~v~~~~~~~ 142 (498)
..||+|| .|+..- .|..=|.++|||++.+.-+.+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 5799877 555333 466789999999999875544
No 294
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=28.53 E-value=4.5e+02 Score=25.45 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCCEEEEEEcCC
Q 041419 26 ELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 26 ~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+|...|.+. ||+|++++-..
T Consensus 13 ~L~~~L~~~-gh~v~iltR~~ 32 (297)
T COG1090 13 ALTARLRKG-GHQVTILTRRP 32 (297)
T ss_pred HHHHHHHhC-CCeEEEEEcCC
Confidence 567788888 99999999654
No 295
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.26 E-value=1.2e+02 Score=23.80 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCcEEE--eCCCchh----HHHHHHHhCCcEEEEecchH
Q 041419 110 RPTALI--VDFFGTE----AMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 110 ~pD~vI--~D~~~~~----a~~~A~~lgiP~v~~~~~~~ 142 (498)
++|+|| +|+.... +...|++.|+|++.......
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 678876 6665443 33789999999988764443
No 296
>PLN02939 transferase, transferring glycosyl groups
Probab=28.19 E-value=1e+02 Score=35.22 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCC-----CccCHH-HHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 4 TKLKPHICLLASP-----GMGHLI-PVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 4 ~~~~~~Ill~~~p-----~~GHv~-P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+..+|||++++.= -.|-+- -.-.|.++|+++ ||+|.+++|..
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y 525 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKY 525 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 4677999998642 223333 345799999999 99999999865
No 297
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.98 E-value=50 Score=31.19 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCEEEEEEcCC
Q 041419 24 VVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 24 ~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.-.|+++|+++ ||+|++++|-.
T Consensus 22 ~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHhc-CCeEEEEEccc
Confidence 45789999999 99999999865
No 298
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.96 E-value=1.2e+02 Score=29.54 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=37.1
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+-||-||+..+++. ++|++.+ |.- .+|.. ..++.+++.+++++++.+
T Consensus 64 ~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL-------t~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISD--FLISLGGDGTLISLCRKAAEYDKFVLGI--------HAG------HLGFL-------TDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCC--EEEEECCCHHHHHHHHHhcCCCCcEEEE--------eCC------CcccC-------CcCCHHHHHHHHHHHHcC
Confidence 455 89999999999988663 6777766 221 13333 346678888888888864
No 299
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.85 E-value=93 Score=26.02 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=27.9
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 10 ICLLASP-GMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 10 Ill~~~p-~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
++++-+| ..=.+.-.+-+...|+++ |.+|+++.++.
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkk-gf~v~VaateA 42 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKK-GFDVTVAATEA 42 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhcc-CccEEEecCHh
Confidence 3444444 446677788999999999 99999999886
No 300
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=27.36 E-value=1.2e+02 Score=27.82 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=34.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDAS 51 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (498)
--+++.-.|+.|--.-.++++....++ |+.|.|++.+...+.+
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERI 59 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHH
Confidence 345666677889988899999888888 9999999998765443
No 301
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.34 E-value=1.4e+02 Score=28.78 Aligned_cols=60 Identities=10% Similarity=0.054 Sum_probs=39.8
Q ss_pred cHHHHhccCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHH
Q 041419 363 PQAEILAHPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEML 438 (498)
Q Consensus 363 pq~~lL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~a 438 (498)
++.++...++ ++|+=||-||+..+++. ++|++.+- .- .+|.. -.++.+++.+.
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn--------~G------~lGFL-------~~~~~~~~~~~ 91 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGIN--------RG------NLGFL-------TDIDPKNAYEQ 91 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEe--------CC------CCccc-------ccCCHHHHHHH
Confidence 3344444456 89999999999988653 57777662 11 14433 34567788888
Q ss_pred HHHHhcC
Q 041419 439 VRKIMVD 445 (498)
Q Consensus 439 l~~vl~~ 445 (498)
+.+++.+
T Consensus 92 l~~~~~~ 98 (272)
T PRK02231 92 LEACLER 98 (272)
T ss_pred HHHHHhc
Confidence 8888874
No 302
>PRK11519 tyrosine kinase; Provisional
Probab=27.07 E-value=4.9e+02 Score=29.02 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=31.2
Q ss_pred CCeEEEEc--CCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 7 KPHICLLA--SPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 7 ~~~Ill~~--~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+.++++++ .|+-|--.-.+.||..|+.. |++|.++-..-
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 44555554 46789999999999999999 99999997653
No 303
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.03 E-value=4.9e+02 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 10 ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 10 Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
.+++.....|--.-+|+-++..+.+ |-.|.++++.-+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD~ 44 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAIDT 44 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 3566666789999999999999999 9999999987543
No 304
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.96 E-value=1.4e+02 Score=29.01 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=38.7
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+=||=||+..+++. ++|++.+ |.- .+|.. ..++.+++.++|++++.+
T Consensus 64 ~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL-------t~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SAD--MVISIGGDGTFLRTATYVGNSNIPILGI--------NTG------RLGFL-------ATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEE--------ecC------CCCcc-------cccCHHHHHHHHHHHHcC
Confidence 455 89999999999999873 6787776 221 13433 346778899999999875
No 305
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=26.89 E-value=1e+02 Score=34.31 Aligned_cols=43 Identities=35% Similarity=0.494 Sum_probs=39.0
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
..+++|.|=..|+-|-.+-||.=|++|.+. |.+|.+-.-+...
T Consensus 20 RGklkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEtHg 62 (890)
T COG2205 20 RGKLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVETHG 62 (890)
T ss_pred CCceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecCCC
Confidence 567999999999999999999999999999 9999988877653
No 306
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=26.88 E-value=1.8e+02 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred ceeeecCCcc------hHHHHHhhCCcEEeccc
Q 041419 374 GGFLSHCGWN------STVESIVNGVPMIAWPL 400 (498)
Q Consensus 374 ~~~ItHgG~g------s~~eal~~GvP~v~~P~ 400 (498)
+++++|.|-| .+.+|...++|||++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3688887755 78899999999999963
No 307
>PRK07524 hypothetical protein; Provisional
Probab=26.83 E-value=93 Score=33.18 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=20.7
Q ss_pred eeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 375 GFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 375 ~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
+++.|.|-| .+.+|..-++|+|++-
T Consensus 67 v~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 67 VCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 577777755 7889999999999983
No 308
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=26.24 E-value=73 Score=27.00 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 19 GHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 19 GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
-.+--++-|+..|+++ ||+|++++++.
T Consensus 11 vq~p~alYl~~~Lk~~-G~~v~Va~npA 37 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKK-GFEVVVAGNPA 37 (139)
T ss_dssp THHHHHHHHHHHHHCT-TEEEEEEE-HH
T ss_pred chhHHHHHHHHHHHhc-CCeEEEecCHH
Confidence 3345578899999999 99999999886
No 309
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.13 E-value=87 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 5 KLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 5 ~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+.+|+|+++=.|+.|= -+|..|++. ||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeCC
Confidence 3458999998888874 467889998 99999998754
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.95 E-value=4.2e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcc
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDA 50 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 50 (498)
..--+++.-.|+.|.-.=.++++..-.++ |-.+.|++.+...+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQ 63 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHH
Confidence 33456778888999999999988776677 999999999876544
No 311
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=25.93 E-value=5e+02 Score=23.55 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=56.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC-cccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHHH
Q 041419 10 ICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD-DASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGEK 88 (498)
Q Consensus 10 Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (498)
|.+++..+-|-....+.+|-+-.-+ |.+|.++-.-... ..-+...+... +..+.|..++....++ ..+..+.
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~----~~~~~~d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWE----TQDREAD 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCC----CcCcHHH
Confidence 6677888889888888777777766 7777766421110 00011112221 2357777766322222 1222222
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch
Q 041419 89 ILVLMHKSLPALRSAISAMKFRPTALIVDFFGT 121 (498)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 121 (498)
. ......+....+.+.+- ++|+||.|-+.+
T Consensus 104 ~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 104 I-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred H-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 2 34455555556666554 899999997555
No 312
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=25.91 E-value=3.2e+02 Score=24.27 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=45.8
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC-CcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASH-DDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
.|-+++..+-|-....+.+|-+-.-+ |.+|.++=.-.. ...-....++..+ ++.+..... ++.....+...
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~----~f~~~~~~~~~ 76 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGK----GFVWRMNEEEE 76 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS--HHHHHHGGGT-----EEEE--T----T----GGGHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCC----cccccCCCcHH
Confidence 36778888889888777777666666 778888754332 1111112233333 466665553 11011111111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCCch
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFFGT 121 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~~ 121 (498)
. ...........++.+. ...+|+||.|-...
T Consensus 77 ~-~~~~~~~~~~a~~~i~--~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 77 D-RAAAREGLEEAKEAIS--SGEYDLVILDEINY 107 (172)
T ss_dssp H-HHHHHHHHHHHHHHTT---TT-SEEEEETHHH
T ss_pred H-HHHHHHHHHHHHHHHh--CCCCCEEEEcchHH
Confidence 1 2233333333344433 34899999997433
No 313
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.79 E-value=98 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchh--HHHHHHHhCCcEEEEe
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTE--AMDVADEFGLLKYMFI 138 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~--a~~~A~~lgiP~v~~~ 138 (498)
+.++.++. + +||+||....... ...--++.|||++.+.
T Consensus 60 ~n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 44555544 3 9999998653332 3345678999998764
No 314
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.67 E-value=1.3e+02 Score=26.71 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=28.7
Q ss_pred hHHHHHHHHhc-CCCCcEEEeCCCchhHHHHHHHhCCcEEEEecchHH
Q 041419 97 LPALRSAISAM-KFRPTALIVDFFGTEAMDVADEFGLLKYMFIASNAW 143 (498)
Q Consensus 97 ~~~l~~~l~~~-~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~~~~~~ 143 (498)
..++...+++. ..+.|+||.+. .+..+|+++|+|++.+.++...
T Consensus 111 ~~e~~~~i~~~~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 111 EEEIEAAIKQAKAEGVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHHTT--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHHcCCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 34566666655 45899999985 3468999999999877665443
No 315
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=25.46 E-value=1.5e+02 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCcEEEeC-CCchhHHHHHHHhCCcEEEEecch
Q 041419 97 LPALRSAISAMKFRPTALIVD-FFGTEAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 97 ~~~l~~~l~~~~~~pD~vI~D-~~~~~a~~~A~~lgiP~v~~~~~~ 141 (498)
...+.+++++......++|.. .-.++|..+|+++|+|.+.+.|+-
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 345567777762222366644 455567789999999998776543
No 316
>PRK08266 hypothetical protein; Provisional
Probab=25.45 E-value=1.1e+02 Score=32.80 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=21.7
Q ss_pred ceeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 374 GGFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 374 ~~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
+++++|.|-| .+.+|...++|||++-
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3678887755 7899999999999984
No 317
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.44 E-value=1.9e+02 Score=28.30 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=39.1
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+=||=||+..+.+. ++|.+.+ |.- .+|.. ..++.+++.++|++++++
T Consensus 68 ~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G------~lGFL-------~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCD--LVAVLGGDGTFLSVAREIAPRAVPIIGI--------NQG------HLGFL-------TQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCEEEE--------ecC------CCeEe-------eccCHHHHHHHHHHHHcC
Confidence 455 89999999999999753 6787777 321 24544 346778899999999875
No 318
>PRK13604 luxD acyl transferase; Provisional
Probab=25.35 E-value=1.5e+02 Score=29.12 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEE
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFV 43 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~ 43 (498)
.+...++++.+..++-.-+..+|+.|.++ |+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEec
Confidence 44567888999888887899999999999 99887664
No 319
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.19 E-value=1.4e+02 Score=29.02 Aligned_cols=53 Identities=6% Similarity=0.020 Sum_probs=37.4
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+=||-||+..+++. ++|++.+-. - .+|.. ..++.+++.+++++++++
T Consensus 63 ~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G------~lGFl-------~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QAD--LAIVVGGDGNMLGAARVLARYDIKVIGINR--------G------NLGFL-------TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C------CCCcc-------cccCHHHHHHHHHHHHcC
Confidence 455 89999999999999753 567666522 1 13333 345678899999999874
No 320
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=25.18 E-value=2.1e+02 Score=26.71 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=33.1
Q ss_pred HHHHHhhHHHHHHHHhcCCCCcEEEeCCCc--------------hh--------HHHHHHHhCCcEEEEecchH
Q 041419 91 VLMHKSLPALRSAISAMKFRPTALIVDFFG--------------TE--------AMDVADEFGLLKYMFIASNA 142 (498)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~vI~D~~~--------------~~--------a~~~A~~lgiP~v~~~~~~~ 142 (498)
.+..+....+...++++ +||+||+..-+ +. ....++.+|||++.+.+...
T Consensus 231 eYLrkl~r~l~~sl~ef--~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 231 EYLRKLKRCLMQSLAEF--RPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHHHHHHHHHHHhh--CCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 44555566677777777 99999975311 11 22467889999998776543
No 321
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.05 E-value=5.5e+02 Score=28.65 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCeEEEEcC--CCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 7 KPHICLLAS--PGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 7 ~~~Ill~~~--p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+.++++++. |+.|--.=.+.||..|+.. |++|.++-...
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~-G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 345555544 4678888999999999998 99999997654
No 322
>PRK07064 hypothetical protein; Provisional
Probab=24.65 E-value=94 Score=33.19 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.2
Q ss_pred cceeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 373 VGGFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 373 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
.+++++|.|-| .+.+|..-++|+|++-
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34788888865 7889999999999984
No 323
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=24.57 E-value=1e+02 Score=27.53 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=30.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD 49 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 49 (498)
+||++.-.|+.| .+-...|.+.|+++ |++|.++.++.-..
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~~-g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTKL-GYDVTVLMTQAATQ 40 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHHC-CCEEEEEEChHHHh
Confidence 367777777665 44567999999999 99999999886433
No 324
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.56 E-value=1.6e+02 Score=28.84 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=39.1
Q ss_pred cCCcceeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 370 HPSVGGFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 370 ~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
.++ ++|+=||-||+..+++. ++|++.+.. - .+|.. .....+++.++|++++++
T Consensus 72 ~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL-------~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCE--LVLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFL-------AEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCcee-------ccCCHHHHHHHHHHHHcC
Confidence 455 89999999999999764 778887732 1 23444 346678888999999875
No 325
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.46 E-value=1.1e+02 Score=32.49 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
..+.+.+++. +||+||.+. ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3456667776 899999885 34466899999997654
No 326
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.29 E-value=70 Score=28.84 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=23.7
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|+|.++. +.|++- -.|.++...| ||+||-++-..
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhC-CCeeEEEEeCh
Confidence 4565543 444443 3578999999 99999999654
No 327
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=24.27 E-value=2.6e+02 Score=28.35 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHhccCCcceeeecCCcchHHHHHhhCCcEEeccccccchhhHHHHhhhhcceE-EeeccCCCCCcCHHHHHHHHHHHh
Q 041419 365 AEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAF-RSKELPTESLVTRQEIEMLVRKIM 443 (498)
Q Consensus 365 ~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~-~~~~~~~~~~~~~~~l~~al~~vl 443 (498)
..++++++ ++|. .=.=++.-|++.|+|.+++-+ |+-+...+ +++|+-- .++. ..++.+.+.+.+.+.+
T Consensus 280 ~~~l~~~d--l~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~-~~~gl~~~~~~i----~~~~~~~l~~~~~e~~ 348 (385)
T COG2327 280 GGILAACD--LIVG-MRLHSAIMALAFGVPAIAIAY---DPKVRGLM-QDLGLPGFAIDI----DPLDAEILSAVVLERL 348 (385)
T ss_pred HHHhccCc--eEEe-ehhHHHHHHHhcCCCeEEEee---cHHHHHHH-HHcCCCcccccC----CCCchHHHHHHHHHHH
Confidence 45667776 3442 112378889999999999843 44444444 6777653 2332 6788999999999988
Q ss_pred cCC
Q 041419 444 VDK 446 (498)
Q Consensus 444 ~~~ 446 (498)
.+.
T Consensus 349 ~~~ 351 (385)
T COG2327 349 TKL 351 (385)
T ss_pred hcc
Confidence 753
No 328
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.03 E-value=1.4e+02 Score=31.96 Aligned_cols=29 Identities=17% Similarity=0.262 Sum_probs=24.2
Q ss_pred CccCHHHHHH---HHHHHHhCCCCEEEEEEcCC
Q 041419 17 GMGHLIPVVE---LGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 17 ~~GHv~P~l~---LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
-.||+.++|+ +|+-++.+ ||+|.|++...
T Consensus 21 HlGH~~~~l~ADv~aRy~Rl~-G~~v~fvtGtD 52 (558)
T COG0143 21 HLGHLYTYLAADVYARYLRLR-GYEVFFLTGTD 52 (558)
T ss_pred chhhHHHHHHHHHHHHHHHhc-CCeEEEEeccC
Confidence 3499998875 78888888 99999999765
No 329
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=23.75 E-value=1e+02 Score=29.24 Aligned_cols=39 Identities=21% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
..-++|+=.|+.|--+=..+||.+|.++ |+.|+|++.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~e 143 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPD 143 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence 3458888889999999999999999987 99999999775
No 330
>PRK13768 GTPase; Provisional
Probab=23.74 E-value=4e+02 Score=25.15 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=32.1
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+-+++.-.++.|--.=...++..|+.+ |++|.++...+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCC
Confidence 346667778889999999999999998 99999998664
No 331
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=23.74 E-value=3e+02 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=23.5
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
|||+|+-.+. -.+...+.|.++ ||++..+.+..
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~-~~~i~~Vvt~~ 33 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLES-GHEVVAVVTQP 33 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHC-CCcEEEEECCC
Confidence 6788874433 456778888888 89988777643
No 332
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=23.67 E-value=1.2e+02 Score=32.34 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
++.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 556666676 899999775 45578999999997653
No 333
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=23.61 E-value=1.8e+02 Score=32.88 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=45.3
Q ss_pred cCHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHhhcccee
Q 041419 430 VTRQEIEMLVRKIM------VDKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQCEKSLQELV 492 (498)
Q Consensus 430 ~~~~~l~~al~~vl------~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 492 (498)
.+.+.+.+.+..++ +|.+- ....++.+.-++.+++|+++ |.+...++++|++++++++++.
T Consensus 443 ~~~~~~~~v~~~LW~lAl~iEdG~l-s~A~~~Lr~AQe~L~eAL~~-gAs~eEI~rLm~eLR~A~~~ym 509 (820)
T PF13779_consen 443 RTDEALREVADLLWDLALRIEDGDL-SDAERRLRAAQEALREALER-GASDEEIARLMQELREAMQDYM 509 (820)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 45666666666553 34443 56677777777888888766 6778999999999999998764
No 334
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.57 E-value=1.2e+02 Score=31.11 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCccc
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDAS 51 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (498)
+.+++||++...|+.+ .+=...|.+.|++. |++|.++.++.-...+
T Consensus 3 ~l~~k~IllgvTGsia-a~k~~~lv~~L~~~-g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 3 MLAGKRIVLGVSGGIA-AYKALELVRRLRKA-GADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCCeEEEEEeCHHH-HHHHHHHHHHHHhC-CCEEEEEECHhHHHHH
Confidence 4567889998888774 55778999999998 9999999998744443
No 335
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=23.51 E-value=3.8e+02 Score=27.93 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=60.4
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCCEEEEEEcCCC-CcccccccccCCCCCCCeEEEecCCCCCCCCCCCCCchHH
Q 041419 10 ICLLAS-PGMGHLIPVVELGKRLVAHHDVQVTVFVVASH-DDASNSNVHAVPNNNNLFNAVTLPLANISSLVNPDASLGE 87 (498)
Q Consensus 10 Ill~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (498)
|++... ...|--.-...|++.|+++ |++|..+=+... .+. ....... + .+ ..++ ..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d~~D~---~~~~~~~---g-----~~---~~~l-d~------ 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPDYIDP---MFHTQAT---G-----RP---SRNL-DS------ 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCCCCCH---HHHHHHh---C-----Cc---hhhC-Cc------
Confidence 444433 3468889999999999999 999998864321 110 0000000 0 00 0011 00
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcEEEeCCC-------c-----hhHHHHHHHhCCcEEEEecch
Q 041419 88 KILVLMHKSLPALRSAISAMKFRPTALIVDFF-------G-----TEAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~vI~D~~-------~-----~~a~~~A~~lgiP~v~~~~~~ 141 (498)
.+ ...+.+.+.+.++..+.|++|++-. . ....++|+.++.|++.+....
T Consensus 60 ~~-----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 60 FF-----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred cc-----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 00 1234455555555557899996643 1 235689999999999887654
No 336
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.49 E-value=1.2e+02 Score=24.70 Aligned_cols=37 Identities=16% Similarity=-0.017 Sum_probs=32.5
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+++..+.++..|-.....++..|.++ |++|.+.....
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~ 37 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDV 37 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCC
Confidence 36788889999999999999999999 99999997644
No 337
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=23.37 E-value=1.2e+02 Score=32.30 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 455556666 899999885 45578999999998654
No 338
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.31 E-value=92 Score=32.13 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
++.+.+++. +||++|.... ...+|+++|||+..+.
T Consensus 360 e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 556677777 9999998864 5578999999997654
No 339
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=23.28 E-value=1.2e+02 Score=24.91 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=38.9
Q ss_pred CCCCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 4 TKLKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 4 ~~~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
...++.|-+.|..+++.+.|.-.+-+.|.+. ..++.++++.+.+
T Consensus 43 ~~g~Lql~i~pasGrrkLspt~emi~~l~~g-eIel~VLttqpDI 86 (144)
T PF10657_consen 43 RYGKLQLTISPASGRRKLSPTPEMIDKLISG-EIELFVLTTQPDI 86 (144)
T ss_pred cCCceEEEEecCCCccccCCcHHHHHHHhcC-ceEEEEEccCCCe
Confidence 4678999999999999999999999999987 7888888887754
No 340
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.27 E-value=2e+02 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 23 PVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 23 P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
.-+.|++.|.++ |++|..+..+.
T Consensus 12 r~~~~~~~l~~~-g~~v~~~g~~~ 34 (287)
T TIGR02853 12 RQLELIRKLEEL-DAKISLIGFDQ 34 (287)
T ss_pred HHHHHHHHHHHC-CCEEEEEeccc
Confidence 468899999999 99999999873
No 341
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.21 E-value=1.4e+02 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=22.2
Q ss_pred ccCCcceeeecCCcchHHHHHhhCCcEEeccccc
Q 041419 369 AHPSVGGFLSHCGWNSTVESIVNGVPMIAWPLHA 402 (498)
Q Consensus 369 ~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~ 402 (498)
.+..+.++|++||......... ++|+|-+|+.+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 3455558999999888888877 99999999964
No 342
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=23.20 E-value=60 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=24.9
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
+|.++-.|..|+ ++|..|.++ ||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 355555555554 799999999 99999999875
No 343
>PRK11823 DNA repair protein RadA; Provisional
Probab=23.17 E-value=5e+02 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.3
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD 49 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 49 (498)
-+++.-.|+.|--.=+++++..+.++ |..|.|++.+...+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~ 121 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESAS 121 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHH
Confidence 45677778999999999999999988 99999999887544
No 344
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.17 E-value=1e+02 Score=31.48 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCcc
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDDA 50 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~ 50 (498)
..+||++...|+.|= .-.+.|.+.|++. |++|.++.++.-...
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~-g~~V~vv~T~~A~~f 44 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQ-GAEVKVIMTEAAKKF 44 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhC-CCEEEEEECHhHHHH
Confidence 356888888887666 4489999999998 999999998874443
No 345
>PRK10637 cysG siroheme synthase; Provisional
Probab=23.13 E-value=3.8e+02 Score=27.96 Aligned_cols=35 Identities=6% Similarity=0.056 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhhc
Q 041419 432 RQEIEMLVRKIMVDKEGHSSIRVRAMELKYGAQKATS 468 (498)
Q Consensus 432 ~~~l~~al~~vl~~~~~~~~~~~~a~~l~~~~~~a~~ 468 (498)
...|++.|++.+ .+++ ..+-+...++++.+++...
T Consensus 136 a~~lr~~ie~~~-~~~~-~~~~~~~~~~R~~~k~~~~ 170 (457)
T PRK10637 136 ARLLREKLESLL-PQHL-GQVAKYAGQLRGRVKQQFA 170 (457)
T ss_pred HHHHHHHHHHhc-chhH-HHHHHHHHHHHHHHHHhcC
Confidence 467888888888 3445 6677777777777665443
No 346
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=23.06 E-value=1.8e+02 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.6
Q ss_pred ceeeecCCcc------hHHHHHhhCCcEEeccc
Q 041419 374 GGFLSHCGWN------STVESIVNGVPMIAWPL 400 (498)
Q Consensus 374 ~~~ItHgG~g------s~~eal~~GvP~v~~P~ 400 (498)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3688886654 77889999999999964
No 347
>PRK00784 cobyric acid synthase; Provisional
Probab=23.06 E-value=8.9e+02 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=27.7
Q ss_pred eEEEEcC-CCccCHHHHHHHHHHHHhCCCCEEEEEEc
Q 041419 9 HICLLAS-PGMGHLIPVVELGKRLVAHHDVQVTVFVV 44 (498)
Q Consensus 9 ~Ill~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~ 44 (498)
+|++... ...|--.=...|++.|+++ |++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 3555544 3469999999999999999 999987744
No 348
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=23.05 E-value=6.2e+02 Score=24.56 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 6 LKPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 6 ~~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
....|.++-.++.|--.-...|+..|.++ |+.|.++......
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 34556677778999999999999999999 9999998877533
No 349
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.05 E-value=6.3e+02 Score=26.87 Aligned_cols=35 Identities=14% Similarity=-0.086 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 99 ALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 99 ~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
++++++.+. +||++|.+. ....+|+++|||.+.+.
T Consensus 428 ~l~~~l~~~--~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTE--PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhc--CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 455666666 899999875 34678999999998643
No 350
>PLN02929 NADH kinase
Probab=22.89 E-value=1.5e+02 Score=28.93 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=41.1
Q ss_pred eeeecCCcchHHHHHhh---CCcEEeccccc------cchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 375 GFLSHCGWNSTVESIVN---GVPMIAWPLHA------EQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~~---GvP~v~~P~~~------DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
++|+-||-||+..+.+. ++|++.+=.-- .++.+.-. +...+|.. -.++.+++.++|.+++++
T Consensus 67 lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL-------~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 67 LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL-------CAATAEDFEQVLDDVLFG 137 (301)
T ss_pred EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc-------ccCCHHHHHHHHHHHHcC
Confidence 79999999999998654 68877764421 12222211 12235554 346789999999999975
No 351
>PRK05858 hypothetical protein; Provisional
Probab=22.76 E-value=1.3e+02 Score=32.21 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=20.8
Q ss_pred eeeecCCcc------hHHHHHhhCCcEEecc
Q 041419 375 GFLSHCGWN------STVESIVNGVPMIAWP 399 (498)
Q Consensus 375 ~~ItHgG~g------s~~eal~~GvP~v~~P 399 (498)
+++.|.|-| .+++|-..++|||++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 577777744 7899999999999986
No 352
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=22.75 E-value=90 Score=25.72 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCcccc
Q 041419 21 LIPVVELGKRLVAHHDVQVTVFVVASHDDASN 52 (498)
Q Consensus 21 v~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~ 52 (498)
+.|++.+.-.+.-+ ||+++++.|..+.+.+.
T Consensus 9 Vk~L~eIll~Filr-GHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILR-GHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhc-cCeeEEEChHHHhcccc
Confidence 57888899899999 99999999987665543
No 353
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=22.34 E-value=1.4e+02 Score=30.92 Aligned_cols=36 Identities=6% Similarity=0.084 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEEe
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMFI 138 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~~ 138 (498)
.++.+.+++. +||++|.+. ....+|+++|+|++.+.
T Consensus 360 ~e~~~~i~~~--~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 360 TEVGDMIART--EPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHHhh--CCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 3456666666 899999886 34457899999998754
No 354
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.26 E-value=4.5e+02 Score=25.52 Aligned_cols=70 Identities=10% Similarity=-0.045 Sum_probs=41.3
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCcchhhHhhhcccCCCCcEEEEEccCCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC
Q 041419 241 VYAIGPLVRSPDVASPSTKTSPSDSRVIILDWLNEQPSQSVIYVSFGSGGTLSAKQMTELAWSLELSQQRFIWVVRPP 318 (498)
Q Consensus 241 v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 318 (498)
-.++|....++. .....-.++..+..+.+-..+-+-........+...+..+.+++++.|..+++-++..
T Consensus 98 drf~~~~~v~p~--------~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 98 DRFVGFARVDPR--------DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cceeeeeeeCCC--------chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 457776665544 1112345777777654332222222222234455557889999999999999977654
No 355
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=22.09 E-value=4.1e+02 Score=26.28 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=58.0
Q ss_pred CCcEEEEEccCC----CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCC
Q 041419 278 SQSVIYVSFGSG----GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDK 353 (498)
Q Consensus 278 ~~~vV~vs~GS~----~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 353 (498)
+++.|.+.-|+. ..++.+.+.++++.|...+.+++.. +.+.. ...-+........
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~e--------------------~~~~~~i~~~~~~ 237 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAKD--------------------HEAGNEILAALNT 237 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHHh--------------------HHHHHHHHHhccc
Confidence 456788877763 3467788888988887666776543 33211 0010111111111
Q ss_pred C---c-eeecCC--cc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 354 V---G-LVVPAW--AP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 354 ~---~-~~~~~~--~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
+ + +-..+- +. -.+++.+++ ++|+.- .|-++=|.+.|+|+|.+
T Consensus 238 ~~~~~~~~l~g~~sL~el~ali~~a~--l~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 238 EQQAWCRNLAGETQLEQAVILIAACK--AIVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred ccccceeeccCCCCHHHHHHHHHhCC--EEEecC-ChHHHHHHHhCCCEEEE
Confidence 0 1 112222 33 357888888 788864 58899999999999986
No 356
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.02 E-value=3.1e+02 Score=30.17 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCeE-EEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 6 LKPHI-CLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 6 ~~~~I-ll~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
.++|| +|.|+|-. .+.-+=..-..|.++ ||+|+++.-.
T Consensus 368 ~~~rvLv~spHPDD-evi~~GGTlarl~~~-G~~V~vv~~T 406 (652)
T PRK02122 368 YPKRVIIFSPHPDD-DVISMGGTFRRLVEQ-GHDVHVAYQT 406 (652)
T ss_pred CCceEEEEEeCCCc-hHhhhHHHHHHHHHC-CCcEEEEEec
Confidence 34665 45555533 455555566788888 9999987533
No 357
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=21.91 E-value=1.9e+02 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=33.6
Q ss_pred eEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Q 041419 9 HICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVAS 46 (498)
Q Consensus 9 ~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~ 46 (498)
||++..-++.|-......|++.|+++ |.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 48889999999999999999999999 99999988775
No 358
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.71 E-value=2e+02 Score=28.22 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCCc
Q 041419 7 KPHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVASHDD 49 (498)
Q Consensus 7 ~~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 49 (498)
+|||+|+-.|..+ ...-++|.+. ||+|.-+.+....+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~-~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEA-GHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhC-CCceEEEEeCCCCc
Confidence 4789998877543 4555677777 89988887766543
No 359
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.51 E-value=1.5e+02 Score=28.71 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=33.6
Q ss_pred eeeecCCcchHHHHHhh---CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 375 GFLSHCGWNSTVESIVN---GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~~---GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
++|.-||-||+.+++.. ++|++.++.-. +|.. ..++.+++.+++.+++++
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lGFl-------~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LGFL-------TEVEPEETFFALSRLLEG 112 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CCcc-------ccCCHHHHHHHHHHHHcC
Confidence 79999999999999853 45776665411 1222 234567777788777764
No 360
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.50 E-value=2.1e+02 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=36.8
Q ss_pred eeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 375 GFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
++|+=||-||+.++++. ++|++.+.. - .+|.. ...+.+++.++|++++.+
T Consensus 65 ~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~-----------G---~lGFl-------~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 65 LVIVVGGDGSLLGAARALARHNVPVLGINR-----------G---RLGFL-------TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCCCEEEEeC-----------C---ccccc-------ccCCHHHHHHHHHHHHcC
Confidence 79999999999999763 567776633 1 23332 356789999999999874
No 361
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=21.32 E-value=83 Score=30.13 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHhhccceeccCC
Q 041419 471 GSSYKSLSQVAKQCEKSLQELVTLGQ 496 (498)
Q Consensus 471 g~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
|-....+.+.+++|+....+++|+||
T Consensus 224 GEt~~Ev~e~m~DLr~~gvdilTiGQ 249 (306)
T COG0320 224 GETDEEVIEVMDDLRSAGVDILTIGQ 249 (306)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEecc
Confidence 67788999999999999999999999
No 362
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.09 E-value=7.5e+02 Score=24.13 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=58.0
Q ss_pred CCcEEEEEccCC----CCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCcccccccCCCCCcccccCChhhhhhcCC
Q 041419 278 SQSVIYVSFGSG----GTLSAKQMTELAWSLELSQQRFIWVVRPPVENDVSGSYLTVVDNNSAGKLEDYLPHGFLTRTDK 353 (498)
Q Consensus 278 ~~~vV~vs~GS~----~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 353 (498)
.++.|.+.-|+. ..++.+...++++.+.+.+.+++.. +.+.. ...-+.+....+.
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e--------------------~~~~~~i~~~~~~ 231 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKD--------------------HPAGNEIEALLPG 231 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhh--------------------HHHHHHHHHhCCc
Confidence 456788777663 3467788888888887666665544 33211 0001122222211
Q ss_pred Ccee-ecC--Ccc-HHHHhccCCcceeeecCCcchHHHHHhhCCcEEec
Q 041419 354 VGLV-VPA--WAP-QAEILAHPSVGGFLSHCGWNSTVESIVNGVPMIAW 398 (498)
Q Consensus 354 ~~~~-~~~--~~p-q~~lL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 398 (498)
++. ..+ -+. -..++.+++ ++|+.- .|-++=|.+.|+|.|.+
T Consensus 232 -~~~~l~g~~sL~el~ali~~a~--l~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 232 -ELRNLAGETSLDEAVDLIALAK--AVVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred -ccccCCCCCCHHHHHHHHHhCC--EEEeeC-CHHHHHHHHcCCCEEEE
Confidence 111 112 233 357888888 799875 57899999999999976
No 363
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.03 E-value=1.2e+02 Score=28.01 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=32.0
Q ss_pred CeEEEEcCCCccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 8 PHICLLASPGMGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 8 ~~Ill~~~p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
+-|.+.-+|+.|...-.-.||++|.++ +|+|.-.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchh
Confidence 347788889999999999999999999 9999877754
No 364
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.91 E-value=2e+02 Score=29.05 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=45.8
Q ss_pred ceeeecCCcchHHHHHhh-----------------CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHH
Q 041419 374 GGFLSHCGWNSTVESIVN-----------------GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIE 436 (498)
Q Consensus 374 ~~~ItHgG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~ 436 (498)
+.++|.||..+.+-|+.+ +.|.|.++-.. ++-+.+-. .-+|+|++.-+.+.+..++.++|+
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~L~ 182 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEALE 182 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHHHH
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHHhh
Confidence 378999998877766533 35677775544 46665554 688999655333334678899999
Q ss_pred HHHHHHhcC
Q 041419 437 MLVRKIMVD 445 (498)
Q Consensus 437 ~al~~vl~~ 445 (498)
++|++...+
T Consensus 183 ~~l~~~~~~ 191 (373)
T PF00282_consen 183 KALEKDIAN 191 (373)
T ss_dssp HHHHHHHHT
T ss_pred hhhcccccc
Confidence 999887654
No 365
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.88 E-value=4.8e+02 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.5
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC
Q 041419 11 CLLASPGMGHLIPVVELGKRLVAH 34 (498)
Q Consensus 11 ll~~~p~~GHv~P~l~LA~~L~~r 34 (498)
.++-.|+.||.-=|++|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 566689999999999999999887
No 366
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=20.80 E-value=82 Score=27.67 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.3
Q ss_pred eeeecCCcc------hHHHHHhhCCcEEeccc
Q 041419 375 GFLSHCGWN------STVESIVNGVPMIAWPL 400 (498)
Q Consensus 375 ~~ItHgG~g------s~~eal~~GvP~v~~P~ 400 (498)
++++|+|-| .+.||...++|||++.-
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 677787755 67899999999999943
No 367
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.65 E-value=1.8e+02 Score=28.47 Aligned_cols=50 Identities=10% Similarity=0.236 Sum_probs=37.0
Q ss_pred eeeecCCcchHHHHHhh----CCcEEeccccccchhhHHHHhhhhcceEEeeccCCCCCcCHHHHHHHHHHHhcC
Q 041419 375 GFLSHCGWNSTVESIVN----GVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPTESLVTRQEIEMLVRKIMVD 445 (498)
Q Consensus 375 ~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~~~~~~~~~l~~al~~vl~~ 445 (498)
++|+=||=||+..+.+. ++|.+.+ |.- .+|.. ..++.+++.++|++++++
T Consensus 71 lvi~iGGDGTlL~aar~~~~~~iPilGI--------N~G------~lGFL-------t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 71 FAIVLGGDGTVLSAARQLAPCGIPLLTI--------NTG------HLGFL-------TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCCcEEEE--------eCC------CCccc-------ccCCHHHHHHHHHHHHcC
Confidence 89999999999999774 7787777 211 23333 345678888999988875
No 368
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=20.57 E-value=1.1e+02 Score=28.19 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCCCcEEEeCCCchh-------HHHHHHHhCCcEEEEe
Q 041419 97 LPALRSAISAMKFRPTALIVDFFGTE-------AMDVADEFGLLKYMFI 138 (498)
Q Consensus 97 ~~~l~~~l~~~~~~pD~vI~D~~~~~-------a~~~A~~lgiP~v~~~ 138 (498)
.+.+...++++...||+|++|-.... |..+...+|+|.|-+.
T Consensus 80 ~p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 80 GPPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 45567777777667999999975554 2234445668877543
No 369
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.52 E-value=2.4e+02 Score=25.18 Aligned_cols=28 Identities=18% Similarity=-0.108 Sum_probs=21.7
Q ss_pred CCcEEEeC--CCchhHHHHHHHhCCcEEEE
Q 041419 110 RPTALIVD--FFGTEAMDVADEFGLLKYMF 137 (498)
Q Consensus 110 ~pD~vI~D--~~~~~a~~~A~~lgiP~v~~ 137 (498)
++|.|++= --...|..+|.++|+|++..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 79999943 23456779999999999864
No 370
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=20.46 E-value=1.3e+02 Score=29.48 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=31.9
Q ss_pred CeEEEEcC-CCccCHHHHHHHHHHHHhCCCCEEEEEEcCCCC
Q 041419 8 PHICLLAS-PGMGHLIPVVELGKRLVAHHDVQVTVFVVASHD 48 (498)
Q Consensus 8 ~~Ill~~~-p~~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~~~~ 48 (498)
||++|+.. |+-|--.=..++|..++++ |++|.++++.+..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCc
Confidence 45655554 5779999999999999999 9999999998754
No 371
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.46 E-value=1.5e+02 Score=27.22 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.8
Q ss_pred HHhcCCCCcEEEeCCCc--hhHHHHHHHhCCcEEEEecch
Q 041419 104 ISAMKFRPTALIVDFFG--TEAMDVADEFGLLKYMFIASN 141 (498)
Q Consensus 104 l~~~~~~pD~vI~D~~~--~~a~~~A~~lgiP~v~~~~~~ 141 (498)
+.++ +||+||..... .....-....++|++.+....
T Consensus 56 i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 56 ILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHhC--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 4455 89999987766 344566777899999887654
No 372
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.35 E-value=1.5e+02 Score=28.06 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCCCcEEEeCCCchh-----HHHHHHHhCCcEEEEe
Q 041419 97 LPALRSAISAMKFRPTALIVDFFGTE-----AMDVADEFGLLKYMFI 138 (498)
Q Consensus 97 ~~~l~~~l~~~~~~pD~vI~D~~~~~-----a~~~A~~lgiP~v~~~ 138 (498)
.+.-..+++++ +.|+||+-...-. =..+|+++|||++++-
T Consensus 185 ~~~n~all~q~--~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 185 EEDNKALLEQY--RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred hHHHHHHHHHh--CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 44557788888 9999997653332 2479999999999764
No 373
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=20.28 E-value=7.7e+02 Score=24.80 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCCceeecCCccHHHHhc-cCCcceeeecCC---cc-hHHHHHhhCCcEEeccccccchhhHHHHhhhhcceEEeeccCC
Q 041419 352 DKVGLVVPAWAPQAEILA-HPSVGGFLSHCG---WN-STVESIVNGVPMIAWPLHAEQKMNATMLTEEIGVAFRSKELPT 426 (498)
Q Consensus 352 ~~~~~~~~~~~pq~~lL~-~~~~~~~ItHgG---~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~GvG~~~~~~~~ 426 (498)
+.+...+++..+--+.|+ |.+ ++|+|== .| .=.|+|+-|-|+|- |+..+ .+ +|..-
T Consensus 251 r~gkasfegR~~~p~fla~~tD--~VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l-~d--~GYYY----- 311 (364)
T PF10933_consen 251 RDGKASFEGRFDFPDFLAQHTD--AVVSHQWENPLNYLYYDALYGGYPLVH---------NSPLL-KD--VGYYY----- 311 (364)
T ss_pred hcCeeEEeeecChHHHHHhCCC--EEEeccccchhhHHHHHHHhcCCCccc---------Ccchh-cc--cCcCC-----
Confidence 344566667666666665 556 7998842 22 45799999999985 88887 44 88884
Q ss_pred CCCcCHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 041419 427 ESLVTRQEIEMLVRKIMV-DKEGHSSIRVRAMELKYGAQKATSNSGSSYKSLSQVAKQ 483 (498)
Q Consensus 427 ~~~~~~~~l~~al~~vl~-~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 483 (498)
.+++..+=+++|.+++. .+...++|+++|+++=+... -....+++.+.+.
T Consensus 312 -~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~------p~n~~nv~~y~~~ 362 (364)
T PF10933_consen 312 -PDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRLS------PENPANVRAYEAR 362 (364)
T ss_pred -CCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC------CCCHHHHHHHHHh
Confidence 56888877777777775 23334899999999877732 2233555555443
No 374
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1.7e+02 Score=25.38 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCC-------ccCHHHHHHHHHHHHhCCCCEEEEEEcC
Q 041419 6 LKPHICLLASPG-------MGHLIPVVELGKRLVAHHDVQVTVFVVA 45 (498)
Q Consensus 6 ~~~~Ill~~~p~-------~GHv~P~l~LA~~L~~r~Gh~Vt~~~~~ 45 (498)
+.++|+++..|+ ..|+--++.++++++++ |.+=.+++.-
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~k-GVD~I~cVSV 81 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAK-GVDEIYCVSV 81 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHc-CCceEEEEEe
Confidence 457788887773 47999999999999999 9875555543
No 375
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.03 E-value=1.5e+02 Score=30.61 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCcEEEeCCCchhHHHHHHHhCCcEEEE
Q 041419 98 PALRSAISAMKFRPTALIVDFFGTEAMDVADEFGLLKYMF 137 (498)
Q Consensus 98 ~~l~~~l~~~~~~pD~vI~D~~~~~a~~~A~~lgiP~v~~ 137 (498)
.++.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3566667776 8999998863 458899999999864
Done!