BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041421
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 145/230 (63%), Gaps = 21/230 (9%)
Query: 85 VVTQPCKHQMDELEMIRVFKENIPSVVLIGNLXXXXXXXXXXXXXQSPHTHSRYFAEDQS 144
VV+ P K Q DEL +R+F+EN PSVV I NL F D
Sbjct: 5 VVSTPKKLQTDELATVRLFQENTPSVVYITNLA----------------VRQDAFTLDVL 48
Query: 145 ETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLH 204
E Q SG+GF+WD+ GHIVTN+HVI AS ++V+ +DQ+TF AKVVG DQDKD+AVL
Sbjct: 49 EVP--QGSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLR 106
Query: 205 IDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREI-PAGTGRLIR 263
IDAP ++LRPI VGVSADL VGQK+ AIG+P GL T TTGVIS L REI A TGR I+
Sbjct: 107 IDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQ 166
Query: 264 GVIQIDASINXXXXXXXXXXXXXXXIGVNTFI--TSGAFTGIGFATPIDT 311
VIQ DA+IN IG+NT I SGA +G+GF+ P+DT
Sbjct: 167 DVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDT 216
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 5/180 (2%)
Query: 136 SRYFAEDQSETQFLQAS-GAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGH 194
++F E + AS G+GF++D +G+I+TN+HV+ A + V+ D S + A+ +G
Sbjct: 40 KKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGG 99
Query: 195 DQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREI 254
D++ D+AV+ I A + + + G S + +G+ AIG+PLG T T GV+SA R I
Sbjct: 100 DEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRI 159
Query: 255 PA--GTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSG-AFTGIGFATPIDT 311
P G+G + G+IQ DA+IN IG+NT I + +GFA PI+T
Sbjct: 160 PKPDGSGYYV-GLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINT 218
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 132 PHTHSRYFAEDQSE--TQFLQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFY 188
P ++F +D + Q + G+G + + G+++TN+HVI A K+ + +D F
Sbjct: 42 PEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFD 101
Query: 189 AKVVGHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVIS 248
AK++G D D+A+L I P+ +L I + S L VG A+G+P GL T T+G++S
Sbjct: 102 AKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS 160
Query: 249 ALGREIPAGTGRLIRGV---IQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGI 303
ALGR +G + G+ IQ DASIN IG+NT I + G GI
Sbjct: 161 ALGR-----SGLNLEGLENFIQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGI 215
Query: 304 GFATPIDTA 312
GFA P + A
Sbjct: 216 GFAIPSNMA 224
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 132 PHTHSRYFAEDQSE--TQFLQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFY 188
P ++F +D + Q + G+G + + G+++TN+HVI A K+ + +D F
Sbjct: 42 PEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFD 101
Query: 189 AKVVGHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVIS 248
AK++G D D+A+L I P+ +L I + S L VG A+G+P GL T T+G++S
Sbjct: 102 AKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS 160
Query: 249 ALGREIPAGTGRLIRGV---IQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGI 303
ALGR +G + G+ IQ DASIN IG+NT I + G GI
Sbjct: 161 ALGR-----SGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGI 215
Query: 304 GFATPIDTA 312
GFA P + A
Sbjct: 216 GFAIPSNMA 224
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 132 PHTHSRYFAEDQSE--TQFLQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFY 188
P ++F +D + Q + G+G + + G+++TN+HVI A K+ + +D F
Sbjct: 42 PEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFD 101
Query: 189 AKVVGHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVIS 248
AK++G D D+A+L I P+ +L I + S L VG A+G+P GL T T+G++S
Sbjct: 102 AKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS 160
Query: 249 ALGREIPAGTGRLIRGV---IQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGI 303
ALGR +G + G+ IQ DASIN IG+NT I + G GI
Sbjct: 161 ALGR-----SGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGI 215
Query: 304 GFATPIDTA 312
GFA P + A
Sbjct: 216 GFAIPSNMA 224
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 153 GAGFLWDQDGHIVTNHHVICDASK---------VKVSFSDQSTFYAKVVGHDQDKDLAVL 203
G+G + +G I+TN+HVI A+K V+FSD T VVG D D+AV+
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIP----AGTG 259
+ + L PI +G S+DL VGQ + AIG PLGL T TTG++SAL R + AG
Sbjct: 93 RVQGVSG-LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQ 151
Query: 260 RLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFI-TSGAFT--------GIGFATPID 310
+ IQ DA+IN +GVN+ I T GA + G+GFA P+D
Sbjct: 152 NTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVD 211
Query: 311 TA 312
A
Sbjct: 212 QA 213
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK+VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I + S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK+VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I + S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK+VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I + S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK+VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I + S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK+VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I + S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 84/161 (52%), Gaps = 6/161 (3%)
Query: 151 ASGAGFLWDQD-GHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPN 209
A G+G + D D G++VTN+HV+ +A+ +KV SD F AK VG D D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 210 HELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPAGTGRLIRGVIQID 269
+ L I S L VG AIG+P GL T T+G++SALGR IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRS--GLNAENYENFIQTD 202
Query: 270 ASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATP 308
A+IN IG+NT I + G GIGFA P
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIP 243
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 18/173 (10%)
Query: 149 LQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDA 207
++ G+G + D +G I+TN HVI +AS + V+ D A+++G D + DLAVL IDA
Sbjct: 75 FESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA 134
Query: 208 PNHELRPIHVGVSADLHVGQKICAIGHPLGL-----PFTCTTGVISALGREIPAGTGRLI 262
N L+ + +G S L VG + AIG+P GL + T G++SAL R + I
Sbjct: 135 KN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR-----SDLNI 187
Query: 263 RGV---IQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATPID 310
GV IQ DA+IN IG+NT I S G GIGFA PI+
Sbjct: 188 EGVENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 149 LQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDA 207
++ G+G + D +G I+TN HVI +AS + V+ D A+++G D + DLAVL IDA
Sbjct: 75 FESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA 134
Query: 208 PNHELRPIHVGVSADLHVGQKICAIGHPLGL-----PFTCTTGVISALGREIPAGTGRLI 262
N L+ + +G S L VG + AIG+P GL + T G++SAL R G +
Sbjct: 135 KN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--V 190
Query: 263 RGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATPID 310
IQ DA+IN IG+NT I S G GIGFA PI+
Sbjct: 191 ENFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 149 LQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDA 207
++ G+G + D +G I+TN HVI +AS + V+ D A+++G D + DLAVL IDA
Sbjct: 75 FESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA 134
Query: 208 PNHELRPIHVGVSADLHVGQKICAIGHPLGL-----PFTCTTGVISALGREIPAGTGRLI 262
N L+ + +G S L VG + AIG+P GL + T G++SAL R G +
Sbjct: 135 KN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--V 190
Query: 263 RGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATPID 310
IQ DA+IN IG+NT I S G GIGFA PI+
Sbjct: 191 ENFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNT--FITSG---AFTGIGFAT 307
TGR + +Q DASIN +G+NT F S GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 19 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 78
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 79 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 137
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 138 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 195
Query: 308 PIDTA 312
P A
Sbjct: 196 PFQLA 200
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 47 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 106
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 107 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 165
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 166 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 223
Query: 308 PIDTA 312
P A
Sbjct: 224 PFQLA 228
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 35 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 94
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 95 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 153
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 154 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 211
Query: 308 PIDTA 312
P A
Sbjct: 212 PFQLA 216
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 19 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 78
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 79 GSDSLTDLAVLKINATGG-LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 137
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 138 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 195
Query: 308 PIDTA 312
P A
Sbjct: 196 PFQLA 200
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 47 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 106
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 107 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 165
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 166 IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 223
Query: 308 PIDTA 312
P A
Sbjct: 224 PFQLA 228
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 12/170 (7%)
Query: 149 LQASGAGFLWD-QDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDA 207
++ G+G + D +G I+TN HVI +AS + V+ D A+++G D + DLAVL IDA
Sbjct: 75 FESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA 134
Query: 208 PNHELRPIHVGVSADLHVGQKICAIGHPLGL-----PFTCTTGVISALGREIPAGTGRLI 262
N L+ + +G S L VG + AIG+P GL + T G++SAL R G +
Sbjct: 135 KN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--V 190
Query: 263 RGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITS--GAFTGIGFATPID 310
IQ DA+I IG+NT I S G GIGFA PI+
Sbjct: 191 ENFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQVITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 47 NVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 106
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 107 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 165
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN G+NT + GIGFA
Sbjct: 166 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAI 223
Query: 308 PIDTA 312
P A
Sbjct: 224 PFQLA 228
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 19 NVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 78
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 79 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 137
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN G+NT + GIGFA
Sbjct: 138 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAI 195
Query: 308 PIDTA 312
P A
Sbjct: 196 PFQLA 200
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 24 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 83
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 84 GSDSLTDLAVLIIKA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 142
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 143 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 200
Query: 308 PIDTA 312
P A
Sbjct: 201 PFQLA 205
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 47 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 106
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 107 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 165
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + + DASIN +G+NT + GIGFA
Sbjct: 166 IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 223
Query: 308 PIDTA 312
P A
Sbjct: 224 PFQLA 228
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA GR
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGR 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + + DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 47 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 106
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA G
Sbjct: 107 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGA 165
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 166 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 223
Query: 308 PIDTA 312
P A
Sbjct: 224 PFQLA 228
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVV 192
+ ++R + ++ G+G + DQ G+I+TN HVI DA ++ V+ D F A +V
Sbjct: 45 NVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLV 104
Query: 193 GHDQDKDLAVLHIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGR 252
G D DLAVL I+A L I + H+G + AIG+P L T T G+ISA G
Sbjct: 105 GSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGA 163
Query: 253 EIPAGTGRLIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAF-----TGIGFAT 307
TGR + +Q DASIN +G+NT + GIGFA
Sbjct: 164 IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAI 221
Query: 308 PIDTA 312
P A
Sbjct: 222 PFQLA 226
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 144 SETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVL 203
S+ + ASG+GF+ +DG IVTN HV+ + +VKV + +T+ AK+ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISAL---GREIPAGTGR 260
ID +L + +G S++L G+ + AIG P L T TTG++S G+E+ G
Sbjct: 99 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL--GLRN 155
Query: 261 LIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
IQ DA IN IG+NT + GI FA P D
Sbjct: 156 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVTA---GISFAIPSD 202
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 144 SETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVL 203
S+ + ASG+GF+ +DG IVTN HV+ + +VKV + +T+ AK+ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISAL---GREIPAGTGR 260
ID +L + +G S++L G+ + AIG P L T TTG++S G+E+ G
Sbjct: 99 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL--GLRN 155
Query: 261 LIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
IQ DA IN IG+NT + GI FA P D
Sbjct: 156 SDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVTA---GISFAIPSD 202
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 144 SETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVL 203
S+ + ASG+GF+ +DG IVTN HV+ + +VKV + +T+ AK+ D+ D+A++
Sbjct: 39 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 98
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISAL---GREIPAGTGR 260
ID +L + +G S++L G+ + AIG P L T TTG++S G+E+ G
Sbjct: 99 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL--GLRN 155
Query: 261 LIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
IQ DA IN IG+NT + GI FA P D
Sbjct: 156 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVTA---GISFAIPSD 202
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 144 SETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVL 203
S+ + ASG+GF+ +DG IVTN HV+ + +VKV + +T+ AK+ D+ D+A++
Sbjct: 56 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 115
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISAL---GREIPAGTGR 260
ID +L + +G S++L G+ + AIG P L T TTG++S G+E+ G
Sbjct: 116 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL--GLRN 172
Query: 261 LIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
IQ DA IN IG+NT + GI FA P D
Sbjct: 173 SDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVT---AGISFAIPSD 219
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 144 SETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVL 203
S+ + ASG+GF+ +DG IVTN HV+ + +VKV + +T+ AK+ D+ D+A++
Sbjct: 56 SKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALI 115
Query: 204 HIDAPNHELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISAL---GREIPAGTGR 260
ID +L + +G S++L G+ + AIG P L T TTG++S G+E+ G
Sbjct: 116 KIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKEL--GLRN 172
Query: 261 LIRGVIQIDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
IQ DA IN IG+NT + GI FA P D
Sbjct: 173 SDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKVT---AGISFAIPSD 219
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 151 ASGAGFLWDQDGHIVTNHHVICDASKVKVSFSDQSTFYAKVVGHDQDKDLAVLHIDAPNH 210
++G+GF+ DG IVTN HV+ D +V+V T+ A V D D+A L I
Sbjct: 47 SNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQT-KE 105
Query: 211 ELRPIHVGVSADLHVGQKICAIGHPLGLPFTCTTGVISALGREIPA---GTGRLIRGVIQ 267
L + +G SAD+ G+ + A+G P L T T+G++S+ R PA G + IQ
Sbjct: 106 PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQR--PARDLGLPQTNVEYIQ 163
Query: 268 IDASINXXXXXXXXXXXXXXXIGVNTFITSGAFTGIGFATPID 310
DA+I+ IGVNT + GI FA P D
Sbjct: 164 TDAAIDFGNAGGPLVNLDGEVIGVNTMKVTA---GISFAIPSD 203
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 133 HTHSRYFAEDQSETQFLQASGAGFLWDQDGHIVTNHHVICDASKVKVSFS-DQSTFYAKV 191
HT Y Q + QF ++G+ F+ DG ++TN H + ++VKV D + AKV
Sbjct: 57 HTAPDYSLPWQKQRQF-TSTGSAFMIG-DGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKV 114
Query: 192 VGHDQDKDLAVLHIDAPN--HELRPIHVGVSADLHVGQKICAIGHPL-GLPFTCTTGVIS 248
+ D D+A+L +++ + P+ +G L + +G+PL G + T GV+S
Sbjct: 115 LVRGVDCDIALLSVESEDFWKGAEPLRLGHLPRLQ--DSVTVVGYPLGGDTISVTKGVVS 172
Query: 249 ALGREIPAGTGRLIRGVIQIDASIN 273
+ A + G IQIDA+IN
Sbjct: 173 RIEVTSYAHGSSDLLG-IQIDAAIN 196
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase-
Small Subunit From Nitrosomonas Europaea
Length = 165
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 1 MNQIAGVFARRKYNIESLA-AIGLDKDRALFTIVVSGTD 38
++++AG+F+ R YNIESL+ A D + T+V +G D
Sbjct: 18 LSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,183,720
Number of Sequences: 62578
Number of extensions: 241534
Number of successful extensions: 590
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 52
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)