BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041423
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F+ MA E K E++E +V F K + YA +G +G LL GPPGTGK+ + A+A
Sbjct: 10 FKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 269 NYDVYDL------ELTAVKDNTELRKLLIETTSK---SIIVIEDIDCSLDLTGQRXXXXX 319
+ + + E+ + +R L ET K SII I++ID
Sbjct: 69 HVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDEIDA------------- 114
Query: 320 XXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
+ +E+ TL+ LL +DG S +++ TN E LD
Sbjct: 115 ---IGKSRAAGGVVSGNDEREQ-----TLNQLLAEMDGFGSEN-APVIVLAATNRPEILD 165
Query: 380 PALIRRGRMDKHIELSYCTFQG 401
PAL+R GR D+ + + F G
Sbjct: 166 PALMRPGRFDRQVLVDKPDFNG 187
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 44/226 (19%)
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD---VY 273
EK E++E L S R +A +G +G LLYGPPGTGK+ A+AN + V
Sbjct: 219 EKLREVVE-LPLLSPER--FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275
Query: 274 DLELTA--VKDNTELRKLLIE---TTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXX 328
EL V + + + L E T II ++ID + G R
Sbjct: 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDA---VGGARFDDGAG-------- 324
Query: 329 XXXXXXRKEPKEEGSSKV--TLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
G ++V T+ L+ +DG G ++F TN LDPAL+R G
Sbjct: 325 -------------GDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPNTLDPALLRPG 369
Query: 387 RMDKHIELSYCTFQG----FKVLAKNYLNVETHTLFETIQKLMEDT 428
R+D+ +E S +G F++ +K+ ++VE +E I +L ++
Sbjct: 370 RIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIRWELISRLCPNS 414
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 42/186 (22%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA- 279
E++E +V K D + +G +G L+YGPPGTGK+ + A A N L+L A
Sbjct: 192 ELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF--LKLAAP 249
Query: 280 ------VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXX 330
+ + +L + L + + +II I+++D
Sbjct: 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDA------------------------ 285
Query: 331 XXXXRKEPKEEGSSKV--TLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGR 387
R + ++ G +V T+ LLN +DG S +R+ ++ TN V+ LDPAL+R GR
Sbjct: 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGR 342
Query: 388 MDKHIE 393
+D+ IE
Sbjct: 343 LDRKIE 348
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL- 275
E+ +E ++++V F K + RIG +G LL GPPGTGK+ + A+A N + +
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81
Query: 276 -----ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXX 328
EL +R L + + + I+ I++ID G
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG---------------- 125
Query: 329 XXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRM 388
+ +E+ TL+ LL +DG S G +++ TN + LDPAL+R GR
Sbjct: 126 -AGLGGGHDEREQ-----TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRF 177
Query: 389 DKHIELSYCTFQGFKVLAKNYLNVETHT 416
DK I + G K + +E HT
Sbjct: 178 DKKIVVDPPDMLGRKKI------LEIHT 199
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ + E+ E+ E + K+ + + R+G +G LLYGPPGTGK+ + A+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 268 LNYDVYDLELTAVKDN--TELRKLLIETTS------KSIIVIEDIDCSLDLTGQRXXXXX 319
+ + + + D E +++ E + II ++++D + G+R
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDA---IGGRRFS--- 292
Query: 320 XXXXXXXXXXXXXXXRKEPKEEGSS-----KVTLSGLLNFIDGLWSACGGERLIVFTTNY 374
EG+S + TL LL +DG + G+ I+ TN
Sbjct: 293 ---------------------EGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNR 329
Query: 375 VEKLDPALIRRGRMDKHIELSYCTFQG 401
+ LDPAL+R GR+D+ +E+ G
Sbjct: 330 PDTLDPALLRPGRLDRKVEIPLPNEAG 356
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 37/187 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYD 271
K+++ I++++ K + + +G A +G +LYGPPGTGK+ + A+A+ +
Sbjct: 155 KQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214
Query: 272 VYDLELTAVKDNTEL-RKLLI--ETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXX 328
+L + + + + R+L + + SII +++ID S+ T
Sbjct: 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGST----------------- 256
Query: 329 XXXXXXRKEPKEEGSSKV--TLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
R E G S+V T+ LLN +DG ++ + I+ TN ++ LDPAL+R G
Sbjct: 257 ------RVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPG 308
Query: 387 RMDKHIE 393
R+D+ IE
Sbjct: 309 RIDRKIE 315
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 48/228 (21%)
Query: 217 EKKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD---V 272
EK+++ I ++V K + + ++G +G LLYGPPGTGK+ + A+A N V
Sbjct: 23 EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82
Query: 273 YDLEL---------TAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXX 323
EL + VKD +L K + SII I++ID
Sbjct: 83 VGSELVKKFIGEGASLVKDIFKLAK----EKAPSIIFIDEIDA----------------- 121
Query: 324 XXXXXXXXXXXRKEPKEEGSSKV--TLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPA 381
R + G +V TL LL +DG + G+ I+ TN + LDPA
Sbjct: 122 -------IAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRPDILDPA 172
Query: 382 LIRRGRMDKHIELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLME 426
++R GR D+ IE+ +G + K + +N+ E I K+ E
Sbjct: 173 ILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 220
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 38/171 (22%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAVKDNTELRK 288
D Y +IG RG LLYGPPGTGK+ ++ A+AN + + + + + + +
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 289 ---LLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSK 345
L + SII I+++D ++ + GS +
Sbjct: 256 DVFRLARENAPSIIFIDEVDS-------------------------IATKRFDAQTGSDR 290
Query: 346 VT---LSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIE 393
L LL +DG + + ++ TN + LDPAL+R GR+D+ IE
Sbjct: 291 EVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 38/208 (18%)
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL- 275
E+ +E ++++V F K + RIG +G LL GPPGTG + + A+A N + +
Sbjct: 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS 81
Query: 276 -----ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXX 328
EL +R L + + + I+ I++ID G
Sbjct: 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG---------------- 125
Query: 329 XXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRM 388
+ +E+ TL+ LL +DG S G +++ TN + LDPAL+R GR
Sbjct: 126 -AGLGGGHDEREQ-----TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRF 177
Query: 389 DKHIELSYCTFQGFKVLAKNYLNVETHT 416
DK I + G K + +E HT
Sbjct: 178 DKKIVVDPPDMLGRKKI------LEIHT 199
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 37/241 (15%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN- 266
+F+ +A E KLE+ E V + KS + + ++G +G LL GPPG GK+ + A+A
Sbjct: 4 SFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 267 -----LLNYDVYDLELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRXXXXX 319
L +E+ +R L E +++ I+ I++ID G++
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDA----VGKKRSTTM 118
Query: 320 XXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF-TTNYVEKL 378
+EE TL+ LL +DG+ + + +IV +TN + L
Sbjct: 119 SGF-------------SNTEEE----QTLNQLLVEMDGMGTT---DHVIVLASTNRADIL 158
Query: 379 DPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETI--QKLMEDT-KITPADV 435
D AL+R GR+D+H+ + T Q + + + +L T T Q+L E T + AD+
Sbjct: 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADI 218
Query: 436 A 436
A
Sbjct: 219 A 219
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAVKDNTELRK 288
+ Y +G +G +LYG PGTGK+ + A+AN L +L + D L +
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCR 265
Query: 289 LLIETTSK---SIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSK 345
+ + + SI+ I++ID R + G +
Sbjct: 266 QIFKVAGENAPSIVFIDEIDA------------------------IGTKRYDSNSGGERE 301
Query: 346 V--TLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHI 392
+ T+ LLN +DG G+ ++ TN +E LDPALIR GR+D+ I
Sbjct: 302 IQRTMLELLNQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKI 348
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN 266
D + + G +G L YGPPG GK+ + A+AN
Sbjct: 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN 266
D + + G +G L YGPPG GK+ + A+AN
Sbjct: 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 218 KKLEIIEDLVTFS-KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------LLN 269
K+L I+++V + + IG RG LLYGPPGTGK+ + A+AN L+N
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270
Query: 270 YDVYDLELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXX 327
+L A + + LRK E + +II I+++D
Sbjct: 271 GPEIMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDA--------------------- 308
Query: 328 XXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387
++E + +S LL +DGL +++ TN +DPAL R GR
Sbjct: 309 ----IAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGR 362
Query: 388 MDKHIELSYCTFQG 401
D+ +++ G
Sbjct: 363 FDREVDIGIPDATG 376
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 33/153 (21%)
Query: 241 KAWKRGYLLYGPPGTGKSTM---IAAMANLLNYDVYDLELTA--VKDNTELRKLLIETTS 295
+A RG LL+GPPG GK+ + +AA +N +++ LT+ V + +L + L
Sbjct: 145 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
Query: 296 K---SIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLL 352
+ SII I+ +D L R+E + + S ++ L+
Sbjct: 205 ELQPSIIFIDQVDSLL------------------------CERREGEHDASRRLKTEFLI 240
Query: 353 NFIDGLWSACGGERLIVFTTNYVEKLDPALIRR 385
F DG+ SA L++ TN ++LD A++RR
Sbjct: 241 EF-DGVQSAGDDRVLVMGATNRPQELDEAVLRR 272
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 35/212 (16%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF +A E K E+ E LV + + + ++G +G L+ GPPGTGK+ + A+A
Sbjct: 10 TFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRXXXXX 319
+ + E+ + +R + + + II I++ID + QR
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA---VGRQRGAGLG 125
Query: 320 XXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF-TTNYVEKL 378
+ +E+ TL+ +L +DG G E +IV TN + L
Sbjct: 126 GG--------------HDEREQ-----TLNQMLVEMDGFE---GNEGIIVIAATNRPDVL 163
Query: 379 DPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410
DPAL+R GR D+ + + +G + + K ++
Sbjct: 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 45/175 (25%)
Query: 231 KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-------------LLNYDVYDLEL 277
++ D + +G G LL GPPG GK+ + A+AN LLN V + E
Sbjct: 31 RNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE- 89
Query: 278 TAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKE 337
AV+ + K ++ +I +++D R+
Sbjct: 90 RAVRQVFQRAK----NSAPCVIFFDEVD-------------------------ALCPRRS 120
Query: 338 PKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHI 392
+E G+S ++ LL +DGL + + I+ TN + +DPA++R GR+DK +
Sbjct: 121 DRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTL 173
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 226 LVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAV 280
+V F K+ + +G +G LL GPPG GK+ + A+A + D V
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 281 KDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKE 340
+ L ET + I ID +D G++ + +E
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGG-------------NDERE 160
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
+ TL+ LL +DG +++ TN + LDPAL+R GR D+ I + +
Sbjct: 161 Q-----TLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213
Query: 401 G 401
G
Sbjct: 214 G 214
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 226 LVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAV 280
+V F K+ + +G +G LL GPPG GK+ + A+A + D V
Sbjct: 46 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105
Query: 281 KDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKE 340
+ L ET + I ID +D G++ + +E
Sbjct: 106 GVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGG-------------NDERE 151
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
+ TL+ LL +DG +++ TN + LDPAL+R GR D+ I + +
Sbjct: 152 Q-----TLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 204
Query: 401 G 401
G
Sbjct: 205 G 205
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 226 LVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAV 280
+V F K+ + +G +G LL GPPG GK+ + A+A + D V
Sbjct: 55 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 281 KDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKE 340
+ L ET + I ID +D G++ + +E
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGG-------------NDERE 160
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
+ TL+ LL +DG +++ TN + LDPAL+R GR D+ I + +
Sbjct: 161 Q-----TLNQLLVEMDGFEKDT--AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213
Query: 401 G 401
G
Sbjct: 214 G 214
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 34/154 (22%)
Query: 241 KAWKRGYLLYGPPGTGKSTMIAAM-----ANLLNYDVYDLELTAVKDNTELRKLLIETT- 294
+A +G LL+GPPG GK+ + A+ A LN L V D +L + L
Sbjct: 51 RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
Query: 295 --SKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLL 352
SII I+++D R + E S ++ L+
Sbjct: 111 HMQPSIIFIDEVDSL------------------------LSERSSSEHEASRRLKTEFLV 146
Query: 353 NFIDGLWSACGGERLIVF-TTNYVEKLDPALIRR 385
F DGL G+R++V TN ++LD A +RR
Sbjct: 147 EF-DGLPGNPDGDRIVVLAATNRPQELDEAALRR 179
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 226 LVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----LLNYDVYDLELTAV 280
+V F K+ + +G +G LL GPPG GK+ + A+A + D V
Sbjct: 31 IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90
Query: 281 KDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKE 340
+ L ET + I ID +D G++ + +E
Sbjct: 91 GVGAARVRDLFETAKRHAPCIVFID-EIDAVGRKRGSGVGGG-------------NDERE 136
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
+ TL+ LL +DG +++ TN + LDPAL+R GR D+ I + +
Sbjct: 137 Q-----TLNQLLVEMDGFEKDT--AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 401 G 401
G
Sbjct: 190 G 190
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY------DLELTAVKDNTELRKLLIETTSK-- 296
RG LL+GPPGTGKS + A+A N + DL + ++ +L K L + +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 297 -SIIVIEDIDCSLDLTGQR 314
SII I++ID L G R
Sbjct: 228 PSIIFIDEIDS---LCGSR 243
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY------DLELTAVKDNTELRKLLIETTSK-- 296
RG LL+GPPGTGKS + A+A N + DL + ++ +L K L + +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 297 -SIIVIEDIDCSLDLTGQR 314
SII I++ID L G R
Sbjct: 106 PSIIFIDEIDS---LCGSR 121
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 34/148 (22%)
Query: 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY-----DLELTAVKDNTELRKLLIETTSK---S 297
G LLYGPPGTGKS + A+A N + DL + ++ +L K L + S
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 121
Query: 298 IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDG 357
II I+++D LTG R E + E S ++ LL ++G
Sbjct: 122 IIFIDEVDA---LTG---------------------TRGEGESEASRRIKTE-LLVQMNG 156
Query: 358 LWSACGGERLIVFTTNYVEKLDPALIRR 385
+ + G L++ TN +LD A+ RR
Sbjct: 157 VGNDSQG-VLVLGATNIPWQLDSAIRRR 183
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 34/148 (22%)
Query: 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY-----DLELTAVKDNTELRKLLIETTSK---S 297
G LLYGPPGTGKS + A+A N + DL + ++ +L K L + S
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 145
Query: 298 IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDG 357
II I+ +D LTG R E + E S ++ LL ++G
Sbjct: 146 IIFIDQVDA---LTG---------------------TRGEGESEASRRIKTE-LLVQMNG 180
Query: 358 LWSACGGERLIVFTTNYVEKLDPALIRR 385
+ + G L++ TN +LD A+ RR
Sbjct: 181 VGNDSQG-VLVLGATNIPWQLDSAIRRR 207
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 34/148 (22%)
Query: 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY-----DLELTAVKDNTELRKLLIETTSK---S 297
G LLYGPPGTGKS + A+A N + DL + ++ +L K L + S
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 112
Query: 298 IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDG 357
II I+ +D LTG R E + E S ++ LL ++G
Sbjct: 113 IIFIDQVDA---LTG---------------------TRGEGESEASRRIKTE-LLVQMNG 147
Query: 358 LWSACGGERLIVFTTNYVEKLDPALIRR 385
+ + G L++ TN +LD A+ RR
Sbjct: 148 VGNDSQG-VLVLGATNIPWQLDSAIRRR 174
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTEL 286
G R +LYGPPG GK+T +A L YD+ + + V+ T L
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLL 119
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 34/148 (22%)
Query: 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY-----DLELTAVKDNTELRKLLIETTSK---S 297
G LLYGPPGTGKS + A+A N + DL + ++ +L K L + S
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS 130
Query: 298 IIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFIDG 357
II I+ +D LTG R E + E S ++ LL ++G
Sbjct: 131 IIFIDQVDA---LTG---------------------TRGEGESEASRRIKTE-LLVQMNG 165
Query: 358 LWSACGGERLIVFTTNYVEKLDPALIRR 385
+ + G L++ TN +LD A+ RR
Sbjct: 166 VGNDSQG-VLVLGATNIPWQLDSAIRRR 192
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 228 TFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN-----------LLNYDVYDLE 276
FS DF + A ++G LYG G GKS ++AAMA+ LL++ + ++
Sbjct: 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195
Query: 277 LTAVKDNTELRKLLIETTSKSIIVIEDIDC 306
+ N +++ + + +++++DI
Sbjct: 196 VKNAISNGSVKEEIDAVKNVPVLILDDIGA 225
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN 266
D + + G +G L YGPPG GK+ + A+AN
Sbjct: 39 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 248 LLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD 282
L YGPPGTGK++ I A+A + NY LEL A D
Sbjct: 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 208 TFETMA--LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMA 265
TF+ +A + PE + I + + I +L+GPPGTGK+T+ +A
Sbjct: 12 TFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71
Query: 266 NLLNYDV 272
N DV
Sbjct: 72 RYANADV 78
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274
A KR L GP G GKST+ +A LN + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 249 LYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR 287
L GPPG GK+++ ++A L + L V+D +E+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 222 IIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKS-TMIAAMANLLNYDVYDLELTAV 280
+I + T + FY + KRG +L GPPG+GK+ M A+ N YDV + +
Sbjct: 1028 VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS-- 1083
Query: 281 KDNT 284
KD T
Sbjct: 1084 KDTT 1087
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 222 IIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKS-TMIAAMANLLNYDVYDLELTAV 280
+I + T + FY + KRG +L GPPG+GK+ M A+ N YDV + +
Sbjct: 1247 VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS-- 1302
Query: 281 KDNT 284
KD T
Sbjct: 1303 KDTT 1306
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 33/149 (22%)
Query: 245 RGYLLYGPPGTGKSTM---IAAMANLLNYDVYDLELTA--VKDNTELRKLLIETT---SK 296
+G LL+GPPGTGK+ + IA+ + + + LT+ V + ++ + L
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 297 SIIVIEDIDCSLDLTGQRXXXXXXXXXXXXXXXXXXXXRKEPKEEGSSKVTLSGLLNFID 356
++I I++ID L G E SS+ + L +D
Sbjct: 178 AVIFIDEIDSLLSQRGD-------------------------GEHESSRRIKTEFLVQLD 212
Query: 357 GLWSACGGERLIVFTTNYVEKLDPALIRR 385
G ++ L+V TN +++D A RR
Sbjct: 213 GATTSSEDRILVVGATNRPQEIDEAARRR 241
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 241 KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV 272
K R LL GPPGTGK+ + A+A L V
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 243 WKRGYLLYGPPGTGKSTMIAAMANLL 268
KR LL G PGTGKS + AMA LL
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 238 RIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271
R GK R L+ G PGTGK+ + MA L D
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278
+ + R+ + L+ GP G+GKST +AAM + LN Y LT
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 241 KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV 272
K R LL GPPGTGK+ + A+A L V
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKS-IIVIEDI 304
LL+GPPG GK+T+ +A+ L ++ A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKS-IIVIEDI 304
LL+GPPG GK+T+ +A+ L ++ A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKS-IIVIEDI 304
LL+GPPG GK+T+ +A+ L ++ A++ +L +L + + I+ I++I
Sbjct: 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEI 99
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 249 LYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIED----I 304
L GP G GKST++A + YD E+ D +E++ L E T I ++
Sbjct: 1110 LVGPSGCGKSTVVALLERF--YDTLGGEI--FIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165
Query: 305 DCSL 308
DCS+
Sbjct: 1166 DCSI 1169
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 248 LLYGPPGTGKSTMIAAM 264
L YGPPGTGK++ I A+
Sbjct: 62 LFYGPPGTGKTSTILAL 78
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
HP TF L+ +K + V F+ S+ A +++GPPGTGK+T +
Sbjct: 181 HPLTFFNTCLDTSQK-----EAVLFALSQKELA----------IIHGPPGTGKTTTV 222
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
HP TF L+ +K + V F+ S+ A +++GPPGTGK+T +
Sbjct: 181 HPLTFFNTCLDTSQK-----EAVLFALSQKELA----------IIHGPPGTGKTTTV 222
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 248 LLYGPPGTGKSTMIAAMANLLN 269
L+ GP G+GKST IA+M + +N
Sbjct: 140 LVTGPTGSGKSTTIASMIDYIN 161
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 248 LLYGPPGTGKSTMIAAMANL 267
LL G PG+GKST+ A+ANL
Sbjct: 13 LLSGHPGSGKSTIAEALANL 32
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 248 LLYGPPGTGKSTMIAAMANLL----------NYDVY----DLELTAVKDNTELRKLLIET 293
++ G PG GKST++A + +L NY + L+L KD E+RKL +E
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 294 TSK 296
K
Sbjct: 65 QKK 67
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 246 GYLLYGPPGTGKSTMIAAMANLL 268
G L++G GTGKST + A+A LL
Sbjct: 47 GVLVFGDRGTGKSTAVRALAALL 69
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 396 YCTFQGFKVLAKNYLNVETHTLFETIQKLME--DTKITPADVAENLMPKSPSDNVEKCLS 453
Y T +G VL + V+ + QKL+ D K+ P D+ ++L+ +P D E L+
Sbjct: 124 YATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKE-ILA 182
Query: 454 SLIQAL 459
S I L
Sbjct: 183 SFISGL 188
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 396 YCTFQGFKVLAKNYLNVETHTLFETIQKLME--DTKITPADVAENLMPKSPSDNVEKCLS 453
Y T +G VL + V+ + QKL+ D K+ P D+ ++L+ +P D E L+
Sbjct: 124 YATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKE-ILA 182
Query: 454 SLIQAL 459
S I L
Sbjct: 183 SFISGL 188
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIED 303
KR +L GP +GK+T+ AA+ L ++ L + N EL + ++V ED
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV----AIDQFLVVFED 209
Query: 304 I 304
+
Sbjct: 210 V 210
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIED 303
KR +L GP +GK+T+ AA+ L ++ L + N EL + ++V ED
Sbjct: 160 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV----AIDQFLVVFED 215
Query: 304 I 304
+
Sbjct: 216 V 216
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIED 303
KR +L GP +GK+T+ AA+ L ++ L + N EL + ++V ED
Sbjct: 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV----AIDQFLVVFED 224
Query: 304 I 304
+
Sbjct: 225 V 225
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIED 303
KR +L GP +GK+T+ AA+ L ++ L + N EL + ++V ED
Sbjct: 162 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGV----AIDQFLVVFED 217
Query: 304 I 304
+
Sbjct: 218 V 218
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 396 YCTFQGFKVLAKNYLNVETHTLFETIQKLME--DTKITPADVAENLMPKSPSDNVEKCLS 453
Y T +G VL + V+ + QKL+ D K+ P D+ ++L+ +P D E L+
Sbjct: 124 YATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKE-ILA 182
Query: 454 SLIQAL 459
S I L
Sbjct: 183 SFISGL 188
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVY 273
LL GPPG GK+T+ +A+ L +++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVY 273
LL GPPG GK+T+ +A+ L +++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVY 273
LL GPPG GK+T+ +A+ L +++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVY 273
LL GPPG GK+T+ +A+ L +++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 LLYGPPGTGKSTMIAAMANLLNYDVY 273
LL GPPG GK+T+ +A+ L +++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIH 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,029,090
Number of Sequences: 62578
Number of extensions: 501960
Number of successful extensions: 1546
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 105
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)