BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041423
(500 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 162/312 (51%), Gaps = 30/312 (9%)
Query: 162 LQHVVKEGKEIRVRNRQRK--LYTNSPGYKWPSYKQTMWSHIVFEHPA---TFETMALEP 216
Q++++E KE+ + + K +YT S G W F HP ++ L+
Sbjct: 165 FQNLIEEAKEMALEKEEGKTLIYT-SMGTDWRR----------FGHPRRKRPISSVILDK 213
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276
K II+D+ F + D+Y G ++RGYLLYGPPGTGKS+ I A+A L + L
Sbjct: 214 GKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILN 273
Query: 277 LT--AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKE----KLD 330
L +V D T L +LL +SII++EDID ++ TG A+ +S + L
Sbjct: 274 LAGKSVSD-TSLNQLLATAPQRSIILLEDIDSAIQ-TGNHDLSAKSNSANAPSISSGGLQ 331
Query: 331 KEISRKEPK-EEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMD 389
+ P G S +T SGLLN +DG+ ++ G R++ TTN++EKLD LIR GR+D
Sbjct: 332 YQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVD 389
Query: 390 KHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVE 449
IE+ C+ + + + + + ++KL E+ K +PA + M + S+N
Sbjct: 390 LQIEIGLCSSYQMEQMFLKFYPTDFDLAKQFVEKL-ENYKFSPAQLQAYFM--TYSNNSI 446
Query: 450 KCLSSLIQALKE 461
+ +++L + +K+
Sbjct: 447 EAINNLNELIKK 458
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 126/264 (47%), Gaps = 48/264 (18%)
Query: 203 FEHPAT---FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKST 259
F HP + ++ LE K I +D+ F ++ +Y G ++RGYLLYGPPG+GK++
Sbjct: 198 FGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTS 257
Query: 260 MIAAMANLLNYDVYDLELT--AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKK 317
+ A+A L+YD+ L L + D+ L LL K+++++ED+D +
Sbjct: 258 FLYALAGELDYDICVLNLAEKGLTDD-RLNHLLSNVPPKAVVLLEDVDSAFQ-------- 308
Query: 318 AEKSSDDEKEKLDKEISRKEPKEEG-SSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE 376
R+ E G + VT SGLLN +DG+ S+ ER+I TTN+ E
Sbjct: 309 ----------------GRERSGEVGFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPE 350
Query: 377 KLDPALIRRGRMDKHIELSYCT----------FQGFKVLAKNYLN---VETHTLFETIQK 423
KLDPAL+R GR+D L T F G + L+ +T ++Q
Sbjct: 351 KLDPALVRPGRVDVKAYLGNATPEQVREMFTRFYGHSPEMADDLSDIVCPKNTSMASLQG 410
Query: 424 LMEDTKITPADVAENLMPKSPSDN 447
L K +PAD + M K DN
Sbjct: 411 LFVMNKSSPADAVD--MAKELPDN 432
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 31/250 (12%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
+++ L+ I++D+ F + +Y G ++RGYLLYGPPG GKS+ I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 NYDV-YDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKE 327
+ + + + L LL +S++++ED+D +
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAF------------------- 288
Query: 328 KLDKEISRKEP-KEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
L ++++ + P K +G ++T SGLLN +DG+ A R++ TTNY+++LDPALIR G
Sbjct: 289 -LSRDLAVENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNYIDRLDPALIRPG 345
Query: 387 RMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQK--LMEDTKITPADVAENLM---- 440
R+D + YC+ + + + + +L E + L ++I+PA V M
Sbjct: 346 RVDLKEYVGYCSHWQLTQMFQRFYPGQAPSLAENFAEHVLKATSEISPAQVQGYFMLYKN 405
Query: 441 -PKSPSDNVE 449
P N+E
Sbjct: 406 DPMGAVHNIE 415
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 24/192 (12%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
++ LE +I++D+ F ++ +Y+ G ++RGYLLYGPPG GKS+ I A+A L
Sbjct: 188 LSSVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 NYDV-YDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKE 327
Y + + + L LL +SII++ED+D +
Sbjct: 248 EYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAF------------------- 288
Query: 328 KLDKEISRKEPKE-EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
+ ++++++ P +G ++T SGLLN +DG+ A R++ TTN++++LDPALIR G
Sbjct: 289 -VSRDLNKQNPTAYQGMGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPG 345
Query: 387 RMDKHIELSYCT 398
R+D + +CT
Sbjct: 346 RVDVKQYVGHCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 25/236 (10%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
++ LE I++D+ F + +Y G ++RGYLLYGPPG GKS+ I A+A L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 NYDVYDLELT--AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEK 326
Y + + L+ ++ D+ L LL +SII++ED+D + +
Sbjct: 248 GYSICLMSLSDRSLSDD-RLNHLLSVAPQQSIILLEDVDAAF---------------VSR 291
Query: 327 EKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
E L E +G ++T SGLLN +DG+ A R++ TTN++E+LDPAL+R G
Sbjct: 292 ELLPTE---NPLAYQGMGRLTFSGLLNALDGV--ASSEARIVFMTTNFIERLDPALVRPG 346
Query: 387 RMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETI--QKLMEDTKITPADVAENLM 440
R+D + +C+ + + + E+ + Q L T ++ A V + M
Sbjct: 347 RVDLKQYVGHCSHWQLTQMFRRFYPQESAAEADHFSEQALAAHTDLSAAQVQGHFM 402
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 26/236 (11%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
++ LE I+ D+ F + +Y G ++RGYLLYGPPG GKS+ I A+A L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 NYDV-YDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKE 327
+ + + + L LL +S++++ED+D +
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAF------------------- 288
Query: 328 KLDKEISRKEP-KEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRG 386
L ++++ + P K +G ++T SGLLN +DG+ A R++ TTN++++LDPALIR G
Sbjct: 289 -LSRDLAAENPIKYQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHIDRLDPALIRPG 345
Query: 387 RMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETI--QKLMEDTKITPADVAENLM 440
R+D + +C+ + + + + +L E + L T+I+PA V M
Sbjct: 346 RVDMKEYVGHCSRWQLTQMFQRFYPGQATSLAENFADRVLQATTQISPAQVQGYFM 401
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 26/223 (11%)
Query: 222 IIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV-YDLELTAV 280
I+ D+ F + +Y G ++RGYLLYGPPG GKS+ I A+A L + + +
Sbjct: 201 IVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSS 260
Query: 281 KDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEP-K 339
+ L LL +S++++ED+D + L ++++ + P K
Sbjct: 261 LSDDRLNHLLSVAPQQSLVLLEDVDAAF--------------------LSRDLAVENPVK 300
Query: 340 EEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTF 399
+G ++T SGLLN +DG+ A R++ TTN+V++LDPALIR GR+D + YC+
Sbjct: 301 YQGLGRLTFSGLLNALDGV--ASTEARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCSH 358
Query: 400 QGFKVLAKNYLNVETHTLFETIQK--LMEDTKITPADVAENLM 440
+ + + + +L E + L +I+PA V M
Sbjct: 359 WQLTQMFQRFYPGQAPSLAENFAEHVLRATNQISPAQVQGYFM 401
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 115/216 (53%), Gaps = 24/216 (11%)
Query: 203 FEHPATFETMA---LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKST 259
F +P + +++ L + K ++IED+ +F + +Y G ++RGYLLYG PG GKS+
Sbjct: 177 FGNPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSS 236
Query: 260 MIAAMANLLNYDVYDLELTAVK-DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKA 318
+I A+A LN D+ + L++ D+ ++ LL KSI++IEDID A
Sbjct: 237 LINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDA-----------A 285
Query: 319 EKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKL 378
KS D + ++ +T SGLLN +DG+ S G R++ TTN +E L
Sbjct: 286 FKSHRD-------NVDSNNNNSNNNNSLTYSGLLNALDGVASQEG--RILFMTTNKIELL 336
Query: 379 DPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVET 414
D ALIR GR+D I++S T L ++ N+ T
Sbjct: 337 DSALIREGRIDLKIKVSNATKSQAAQLFTHFYNLPT 372
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 136/269 (50%), Gaps = 44/269 (16%)
Query: 147 LTFHKRYREIITESYLQHVVKEGKEIRVRNRQRK--LYTNSPGYKWPSYKQTMWSHIVFE 204
+T YR+ + ++ E K+I ++ + K +YT S G +W + Q ++
Sbjct: 172 VTLTTLYRD---KHLFDDILNEAKDIALKTTEGKTVIYT-SFGPEWRKFGQPKAKRML-- 225
Query: 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAM 264
++ L+ K I++D+ F K+ +Y+ G ++RGYLLYGPPG+GK++ I A+
Sbjct: 226 -----PSVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQAL 280
Query: 265 ANLLNYDVYDLELTAVK-DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSD 323
A L+Y++ L L+ + L L+ +SI+++EDID + +
Sbjct: 281 AGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFN-------------- 326
Query: 324 DEKEKLDKEISRKEPKEEG-SSKVTLSGLLNFIDGLWSACGGERLIVF-TTNYVEKLDPA 381
R + E+G S VT SGLLN +DG+ S+ E I F TTN+ EKLD A
Sbjct: 327 ----------KRSQTGEQGFHSSVTFSGLLNALDGVTSS---EETITFMTTNHPEKLDAA 373
Query: 382 LIRRGRMDKHIELSYCT-FQGFKVLAKNY 409
++R GR+D + + T +Q K+ K Y
Sbjct: 374 IMRPGRIDYKVFVGNATPYQVEKMFMKFY 402
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 89/143 (62%), Gaps = 7/143 (4%)
Query: 260 MIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSK-SIIVIEDIDCSLDLTGQRKKK- 317
MI A++ ++ L L ++D+ EL LL K +I+V+EDIDC+ + R K+
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 318 ---AEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY 374
EK +DD+ +K ++ + K E SK+TLSG+LN +DG++++ G R+++ TTN+
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 375 VEKLDPALIRRGRMDKHIELSYC 397
E LDPALIRRGR+D IE S C
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNC 141
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 34/197 (17%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A E K E+ E++V+F K+ + Y +G +G LL GPPGTGK+ + A+A
Sbjct: 194 TFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGE 252
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKKAE 319
N + L E+ + +R L + KS I+ I++ID + R K A
Sbjct: 253 ANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDA---VGRARGKNAN 309
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
+S+DE+E TL+ LL +DG S G +I+ TN + LD
Sbjct: 310 MNSNDEREN------------------TLNQLLTEMDGFGSNSG--VIILAATNRADILD 349
Query: 380 PALIRRGRMDK--HIEL 394
AL+R GR D+ H+EL
Sbjct: 350 KALLRAGRFDRQIHVEL 366
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 37/226 (16%)
Query: 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMA 265
P TFE +A E+ ++ + ++V F K+ + Y +G +G LL GPPGTGK+ + A+A
Sbjct: 247 PTTFEDVA-GIEEAVDEVREVVDFLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLLAKAIA 305
Query: 266 NLLNYDVYDL------ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKK 317
+ L E+ +R + + +++ II I+++D G+ +
Sbjct: 306 GEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDA----LGKSRSG 361
Query: 318 AEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEK 377
+ DE+E+ TL+ LL +DG S G ++V TN E
Sbjct: 362 SVVGGHDEREQ------------------TLNALLVEMDGFDSNSG--VIVVAATNRPET 401
Query: 378 LDPALIRRGRMDKHIELSYCTFQGF-KVLAKNYLNVETHTLFETIQ 422
LDPAL+R GR D+H+ + G ++LA + NV+ L ET++
Sbjct: 402 LDPALLRPGRFDRHVLVDRPDVAGREEILAVHVKNVK---LDETVE 444
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 35/203 (17%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A + K E+ ++LV + + D + R+G RG LL GPPGTGK+ + A+A
Sbjct: 174 TFDEVAGQTNAKREV-QELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 268 LNYDVYDL------ELTAVKDNTELRKL--LIETTSKSIIVIEDIDCSLDLTGQRKKKAE 319
+ Y + E+ + +R+L + + S SII I+++D G+ +
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDS----VGRTRGAGY 288
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF-TTNYVEKL 378
DE+E+ TL+ +L +DG G + +IV TN + L
Sbjct: 289 GGGHDEREQ------------------TLNQILAEMDGF---AGHDAVIVLAATNRPDVL 327
Query: 379 DPALIRRGRMDKHIELSYCTFQG 401
DPAL+R GR D+H+ L +G
Sbjct: 328 DPALMRPGRFDRHVTLDLPDQEG 350
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 34/212 (16%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A + E K E ++++V+F K+ D Y IG RG LL GPPGTGK+ + A+A
Sbjct: 182 TFKDVAGQEEAK-ESMQEIVSFLKTPDKYKEIGARCPRGALLVGPPGTGKTLIAKAVAGE 240
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKKAE 319
+ + E+ + ++R L + K+ II I++ID G+R + A
Sbjct: 241 AGVPFFQIAGSEFVEMFVGRGAAKVRDLFKQANEKAPCIIFIDEIDA----VGKR-RDAS 295
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
+S+DE+E+ TL+ LL+ +DG + G +++ TN E LD
Sbjct: 296 LNSNDEREQ------------------TLNQLLSEMDGFDNHKG--IVVLAATNRPETLD 335
Query: 380 PALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411
AL+R GR D+ I + +G + + + + N
Sbjct: 336 KALLRPGRFDRRIPVELPDLKGREAVLQIHAN 367
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F +A E K EI+E V F K+ FY R+G RG +L GPPGTGK+ + A A
Sbjct: 295 FADVAGVDEAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEA 353
Query: 269 NYDVYD------LELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEK 320
N LE+ + +R L + II I++ID + R + +
Sbjct: 354 NVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDA---IGKARGRGGQF 410
Query: 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFT-TNYVEKLD 379
S+DE+E TL+ LL +DG S+ E ++VF TN + LD
Sbjct: 411 GSNDERES------------------TLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLD 449
Query: 380 PALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410
PAL+R GR D+ I + G + + K +L
Sbjct: 450 PALLRPGRFDRQITIDRPDIGGREQIFKVHL 480
>sp|Q3B6R3|FTSH_PELLD ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon luteolum
(strain DSM 273) GN=ftsH PE=3 SV=1
Length = 706
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 39/245 (15%)
Query: 179 RKLYTNSPGYKWPSY---KQTMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDF 235
R++ PG ++ + K ++ ++ TF+ +A E K E++E +V F K
Sbjct: 165 RRMGAGGPGAQFMNIGKNKAALYENLDEHTRITFKDVAGLDEAKAEVME-VVDFLKDPKK 223
Query: 236 YARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL------ELTAVKDNTELRKL 289
Y R+G +G LL GPPGTGK+ + A+A + + + E+ +R L
Sbjct: 224 YTRLGGKLPKGVLLVGPPGTGKTLLAKAVAGEADVPFFSISGSDFVEMFVGVGAARVRDL 283
Query: 290 LIETTSKS--IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347
+ K+ II I++ID + R K A +DE+E T
Sbjct: 284 FRQAKEKAPCIIFIDEIDA---VGRSRGKGAMMGGNDEREN------------------T 322
Query: 348 LSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQG----FK 403
L+ LL +DG + G +++ TN + LDPAL+R GR D+ I + +G F+
Sbjct: 323 LNQLLVEMDGFATDKG--VILMAATNRPDVLDPALLRPGRFDRQIMVDKPDLKGRMDTFR 380
Query: 404 VLAKN 408
V KN
Sbjct: 381 VHTKN 385
>sp|O32617|FTSH_HELFC ATP-dependent zinc metalloprotease FtsH OS=Helicobacter felis
(strain ATCC 49179 / NCTC 12436 / CS1) GN=ftsH PE=3 SV=1
Length = 638
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F MA E K E++E +V F K D YA +G +G LL GPPGTGK+ + A+A
Sbjct: 175 FNDMAGNEEAKEEVVE-IVDFLKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 233
Query: 269 NYDVYDL------ELTAVKDNTELRKL--LIETTSKSIIVIEDIDCSLDLTGQRKKKAEK 320
+ + + E+ + +R L + + + SII I++ID + R
Sbjct: 234 SVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDA---IGKSRAAGGMI 290
Query: 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP 380
S +DE+E+ TL+ LL +DG S +++ TN E LDP
Sbjct: 291 SGNDEREQ------------------TLNQLLAEMDGFGSE-NAPVIVLAATNRPEILDP 331
Query: 381 ALIRRGRMDKHIELSYCTFQG 401
AL+R GR D+ + + F+G
Sbjct: 332 ALLRPGRFDRQVLVDKPDFKG 352
>sp|P71408|FTSH_HELPY ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain ATCC 700392 / 26695) GN=ftsH PE=1 SV=2
Length = 632
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F MA E K E++E +V F K + YA +G +G LL GPPGTGK+ + A+A
Sbjct: 169 FNDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 227
Query: 269 NYDVYDL------ELTAVKDNTELRKLLIETTSK---SIIVIEDIDCSLDLTGQRKKKAE 319
+ + + E+ + +R L ET K SII I++ID + R
Sbjct: 228 HVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDEIDA---IGKSRAAGGV 283
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
S +DE+E+ TL+ LL +DG S +++ TN E LD
Sbjct: 284 VSGNDEREQ------------------TLNQLLAEMDGFGSEN-APVIVLAATNRPEILD 324
Query: 380 PALIRRGRMDKHIELSYCTFQG 401
PAL+R GR D+ + + F G
Sbjct: 325 PALMRPGRFDRQVLVDKPDFNG 346
>sp|Q9ZM66|FTSH_HELPJ ATP-dependent zinc metalloprotease FtsH OS=Helicobacter pylori
(strain J99) GN=ftsH PE=3 SV=1
Length = 632
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F MA E K E++E +V F K + YA +G +G LL GPPGTGK+ + A+A
Sbjct: 169 FNDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 227
Query: 269 NYDVYDL------ELTAVKDNTELRKLLIETTSK---SIIVIEDIDCSLDLTGQRKKKAE 319
+ + + E+ + +R L ET K SII I++ID + R
Sbjct: 228 HVPFFSMGGSSFIEMFVGLGASRVRDLF-ETAKKQAPSIIFIDEIDA---IGKSRAAGGM 283
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
S +DE+E+ TL+ LL +DG S +++ TN E LD
Sbjct: 284 ISGNDEREQ------------------TLNQLLAEMDGFGSEN-APVIVLAATNRPEILD 324
Query: 380 PALIRRGRMDKHIELSYCTFQG 401
PAL+R GR D+ + + F G
Sbjct: 325 PALMRPGRFDRQVLVDKPDFNG 346
>sp|Q2JNP0|FTSH_SYNJB ATP-dependent zinc metalloprotease FtsH OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=ftsH PE=3 SV=1
Length = 638
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 138/304 (45%), Gaps = 40/304 (13%)
Query: 184 NSPGYKWPSYKQTMWSHIVFEHPA--TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGK 241
N PG + ++ ++ + + E TF +A + KLE+ E +V F K+ + + +G
Sbjct: 142 NGPGSQALNFGKS-RARVQMEPKTQITFNDVAGIDQAKLELAE-VVDFLKNSERFTALGA 199
Query: 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL------ELTAVKDNTELRKLL--IET 293
RG LL GPPGTGK+ + A+A + + E+ + +R L +
Sbjct: 200 KIPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKQ 259
Query: 294 TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353
+ I+ I++ID G+++ +DE+E+ TL+ LL
Sbjct: 260 NAPCIVFIDEIDA----VGRQRGAGLGGGNDEREQ------------------TLNQLLT 297
Query: 354 FIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413
+DG G +++ TN + LD AL+R GR D+ + + FQG + K + +
Sbjct: 298 EMDGFEGNSG--IIVIAATNRPDVLDAALLRPGRFDRQVTVDRPDFQGRLEILKVHARGK 355
Query: 414 THTLFETIQKLMEDT-KITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAE 472
T + ++KL T T AD+A NL+ ++ + L+ + ++ E + +R A
Sbjct: 356 TLSADVDLEKLARRTPGFTGADLA-NLLNEAAILAARRNLTEI--SMDEINDAVDRVLAG 412
Query: 473 EERK 476
E+K
Sbjct: 413 PEKK 416
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 32/200 (16%)
Query: 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAA 263
E P TF +A E K E+ E++V + K+ D Y IG +G LLYGPPGTGK+ + A
Sbjct: 146 ESPVTFADVAGMDEVKGEL-EEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARA 204
Query: 264 MANLLNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRK 315
+A + L EL + +R+L + + I+ I++ID + QR
Sbjct: 205 VAGEAGVPFFALSGSSFVELFVGMGASRVRELFAQARKNAPCIVFIDEIDA---VGRQRG 261
Query: 316 KKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV 375
A DE+E+ TL+ LL +DG + G +++ TN
Sbjct: 262 SAAVVGGHDEREQ------------------TLNQLLTEMDGFGAYEG--VIVMAATNRP 301
Query: 376 EKLDPALIRRGRMDKHIELS 395
+ LD AL+R GR D+ I +
Sbjct: 302 DVLDKALLRPGRFDRQIPVG 321
>sp|Q7UUZ7|FTSH1_RHOBA ATP-dependent zinc metalloprotease FtsH 1 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH1 PE=3 SV=1
Length = 672
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 39/210 (18%)
Query: 223 IEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD------LE 276
++++V F K+ + + ++G +G LL GPPGTGK+ + A+A + + ++
Sbjct: 209 LQEIVDFLKTPEKFQKLGGQVPKGVLLNGPPGTGKTLLARAVAGEADVPFFSVNGSEFIQ 268
Query: 277 LTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334
+ + +R L + S SII I++ID G+++ DE+E+
Sbjct: 269 MFVGVGASRVRDLFKTAKEQSPSIIFIDEIDA----VGRQRGAGLGGGHDEREQ------ 318
Query: 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIEL 394
TL+ +L +DG A +++ TN + LDPAL+R GR D+H+ +
Sbjct: 319 ------------TLNQILGEMDGFGGAQA--VIVIAATNRPDVLDPALLRPGRFDRHVTV 364
Query: 395 SYCTFQG----FKVLAKNYL---NVETHTL 417
T +G FKV ++ +V+ H L
Sbjct: 365 GRPTMKGREEIFKVHVRDVPLGDDVDLHRL 394
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL---EL 277
E++E +V +D + ++G +G LLYGPPGTGK+ M A A N L +L
Sbjct: 187 ELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 246
Query: 278 TA--VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332
+ D +L + L + S II I++ID G ++ +E S D+E
Sbjct: 247 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA----IGTKRFDSEVSG-------DRE 295
Query: 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGRMDKH 391
+ R T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 296 VQR-----------TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRK 341
Query: 392 IELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLMED 427
IE + + + + + + +NV FE + + +D
Sbjct: 342 IEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDD 380
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 109/245 (44%), Gaps = 41/245 (16%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A E K E+ E +V F K Y +G +G LLYGPPGTGK+ + A+A
Sbjct: 155 TFDDVAGIDEVKEELAE-IVDFLKHPKRYLELGARIPKGVLLYGPPGTGKTLLAKAVAGE 213
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAE 319
+ + E+ + +R L + S I+ I++ID G+++
Sbjct: 214 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDA----VGRQRGAGY 269
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
DE+E+ TL+ LL +DG + G +I+ TN + LD
Sbjct: 270 GGGHDEREQ------------------TLNQLLVEMDGFSANEG--IIIIAATNRPDVLD 309
Query: 380 PALIRRGRMDKHIELSYCTFQG----FKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435
PAL+R GR D+ I + +G F+V AK +E E + K T AD+
Sbjct: 310 PALLRPGRFDRQIVIDRPDLKGRLAIFQVHAKGK-PLEPDVDLEVLAK--RTPGFTGADI 366
Query: 436 AENLM 440
A NLM
Sbjct: 367 A-NLM 370
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 37/219 (16%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL---EL 277
E++E +V ++ + ++G +G LLYGPPGTGK+ M A A N L +L
Sbjct: 181 ELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240
Query: 278 TA--VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332
+ D +L + LL + S II I++ID G ++ +E S D+E
Sbjct: 241 VQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDA----IGTKRFDSEVSG-------DRE 289
Query: 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGRMDKH 391
+ R T+ LLN +DG S +R+ ++ TN + LDPAL+R GR+D+
Sbjct: 290 VQR-----------TMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRK 335
Query: 392 IELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLMED 427
IE + T + + + + +NV FE + + +D
Sbjct: 336 IEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDD 374
>sp|P46469|FTSH_LACLA ATP-dependent zinc metalloprotease FtsH OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=ftsH PE=3 SV=1
Length = 695
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F +A E+K E++E +V F K+ Y +G G LL GPPGTGK+ + A+A
Sbjct: 192 FADVAGSEEEKQELVE-VVDFLKNPKKYHDLGARIPAGVLLEGPPGTGKTLLAKAVAGEA 250
Query: 269 NYDVYDL------ELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRKKKAEK 320
Y + E+ + +R L + T+ SII I++ID G+++
Sbjct: 251 GVPFYSISGSDFVEMFVGVGASRVRDLFENAKKTAPSIIFIDEIDA----VGRQRGAGLG 306
Query: 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP 380
+DE+E+ TL+ LL +DG + G +++ TN + LDP
Sbjct: 307 GGNDEREQ------------------TLNQLLVEMDG-FQDDGNSVIVIAATNRSDVLDP 347
Query: 381 ALIRRGRMDKHIELSYCTFQG----FKVLAKN 408
AL+R GR D+ + + +G KV AKN
Sbjct: 348 ALLRPGRFDRKVLVGAPDVKGREAVLKVHAKN 379
>sp|P94304|FTSH_BACPE ATP-dependent zinc metalloprotease FtsH OS=Bacillus pseudofirmus
(strain OF4) GN=ftsH PE=3 SV=2
Length = 679
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 37/214 (17%)
Query: 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN 266
A F+ +A E+K E++E +V F K ++ IG +G LL GPPGTGK+ + A+A
Sbjct: 163 AKFKDVAGADEEKQELVE-VVEFLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAG 221
Query: 267 LLNYDVYDL------ELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRKKKA 318
+ + E+ + +R L + + II I++ID G+++
Sbjct: 222 EAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDA----VGRQRGAG 277
Query: 319 EKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKL 378
DE+E+ TL+ LL +DG + G +I+ TN + L
Sbjct: 278 LGGGHDEREQ------------------TLNQLLVEMDGFSANEG--IIIIAATNRADIL 317
Query: 379 DPALIRRGRMDKHIELSYCTFQG----FKVLAKN 408
DPAL+R GR D+ I+++ G KV A+N
Sbjct: 318 DPALLRPGRFDRQIQVNRPDVNGREEVLKVHARN 351
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 223 IEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD------LE 276
I ++V F +S + Y R G A RG L+ GPPGTGK+ M A+A +E
Sbjct: 191 IAEVVDFLRSPERYRRAGAAIPRGVLMVGPPGTGKTLMARAVAGEAGVPFLSVTGSSFVE 250
Query: 277 LTAVKDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEK-SSDDEKEKLDKEI 333
+ + +R L E + I+ +++ID GQR+ A ++DE+E+
Sbjct: 251 MFVGVGASRVRDLFEEARKHAPCIVFVDEIDA----IGQRRAGAGTIVANDEREQ----- 301
Query: 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHI 392
TL+ LL +DG A G +++ TN E LDPAL+R GR D+ +
Sbjct: 302 -------------TLNQLLAEMDGFEPAQG--VVVLAATNRPEVLDPALLRPGRFDRQV 345
>sp|A6TWP7|FTSH2_ALKMQ ATP-dependent zinc metalloprotease FtsH 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH2 PE=3 SV=1
Length = 689
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 51/290 (17%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A E+K E+ E+LV F K+ Y +G +G L+ GPPGTGK+ + A+A
Sbjct: 163 TFDDVAGLDEEKAEV-EELVDFLKNPKKYIELGARIPKGILMIGPPGTGKTYLTKAVAGE 221
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAE 319
+ + E+ + +R L + ++ II I++ID G+++
Sbjct: 222 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKSAPCIIFIDEIDA----VGRKRGAGL 277
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
DE+E+ TL+ LL +DG G +IV TN + LD
Sbjct: 278 GGGHDEREQ------------------TLNQLLVEMDGFGINEG--IIIVAATNRPDILD 317
Query: 380 PALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTK-ITPADVAEN 438
PAL+R GR D+ + + +G + + + + + ++ L T TPAD+ EN
Sbjct: 318 PALLRPGRFDRQVMVGAPDIKGREQILQVHAKGKPLDEDVNLKVLARRTPGFTPADI-EN 376
Query: 439 LMPKSP------------SDNVEKCLSSLIQALKEGKEEAERKQAEEERK 476
LM ++ + VE+ ++ +I L E+ R +E+ERK
Sbjct: 377 LMNEAALLTARKNEKKIKMETVEEAITKVIAGL----EKKSRVISEKERK 422
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 40/249 (16%)
Query: 192 SYKQTMWSHIVFEHPA-TFETMA-LEPEKKLEIIEDLVTFSKSR-DFYARIGKAWKRGYL 248
SY ++ + E P T+E + LEP+ +E I + V ++ + ++G + +G L
Sbjct: 134 SYDAQIYGMELVESPEETYENIGGLEPQ--IEEIREAVELPLTKPQLFEKVGISPPKGVL 191
Query: 249 LYGPPGTGKSTMIAAMANLLN---YDVYDLELTA--VKDNTELRKLLIETT---SKSIIV 300
LYGPPGTGK+ + A+A+ N V EL + + L + L + + SII
Sbjct: 192 LYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIF 251
Query: 301 IEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWS 360
I++ID G + + S D+E+ R TL LL +DG +
Sbjct: 252 IDEIDA----IGAHRNDSTTSG-------DREVQR-----------TLMQLLAEMDGFDN 289
Query: 361 ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAK---NYLNVETHTL 417
G+ IV TN ++ LD AL+R GR D+ IE+ QG + K Y+N+
Sbjct: 290 R--GDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVN 347
Query: 418 FETIQKLME 426
+ +L E
Sbjct: 348 LSEVSRLTE 356
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL- 275
++ +E ++++V F K+ + Y R+G +G LL GPPGTGK+ + A A + L
Sbjct: 212 DEAVEELQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLARATAGEAGVPFFSLS 271
Query: 276 -----ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEK 328
E+ +R L + T K+ I+ I+++D G+ + DE+E+
Sbjct: 272 GSEFVEMFVGVGAARVRDLFAQATQKAPCIVFIDELDA----LGKSRNAGIMGGHDEREQ 327
Query: 329 LDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRM 388
TL+ LL +DG + G +I+ TN E LDPAL+R GR
Sbjct: 328 ------------------TLNQLLAEMDGFDARAG--LIIMGATNRPEILDPALLRPGRF 367
Query: 389 DKHI 392
D+ +
Sbjct: 368 DRQV 371
>sp|O19922|FTSH_CYACA ATP-dependent zinc metalloprotease FtsH OS=Cyanidium caldarium
GN=ftsH PE=3 SV=1
Length = 614
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 33/227 (14%)
Query: 183 TNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKA 242
++ PG + K H+ + FE +A E K E+ +++V F K + +G
Sbjct: 144 SSGPGQAFNFGKAKARFHMEAKTGIVFEDVAGIEEAKEEL-QEIVAFLKDSRKFTNVGAT 202
Query: 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL------ELTAVKDNTELRKLLIETTSK 296
+G LL GPPGTGK+ + A+A + + + E+ + +R L + K
Sbjct: 203 IPKGVLLVGPPGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEK 262
Query: 297 S--IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354
+ I+ I++ID G+++ +DE+E+ TL+ LL
Sbjct: 263 APCIVFIDEIDA----VGRQRGVGIGGGNDEREQ------------------TLNQLLTE 300
Query: 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQG 401
+DG G ++V TN ++ LD AL+R GR D+ I +S G
Sbjct: 301 MDGFSGDTG--VIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNING 345
>sp|B9L3S8|FTSH2_THERP ATP-dependent zinc metalloprotease FtsH 2 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH2 PE=3 SV=1
Length = 699
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
Query: 204 EHP-ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIA 262
E P TF +A E E K E+ + +V F K+ Y RIG RG LL GPPGTGK+ +
Sbjct: 244 ERPQVTFADVAGEEEAKAELAQ-VVDFLKNPAKYHRIGARLPRGVLLVGPPGTGKTLLAR 302
Query: 263 AMANLLNYDVYD------LELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQR 314
A+A + +E+ + +R L + + SII I+++D G++
Sbjct: 303 AVAGEAGVPFFSVSASEFVEMFVGVGASRVRDLFERAKAQAPSIIFIDELDA----VGRQ 358
Query: 315 KKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY 374
+ +DE+E+ TL+ LL +DG + + +++ TN
Sbjct: 359 RFAGLGVGNDEREQ------------------TLNQLLVEMDGFEAHT--DVVVIAATNR 398
Query: 375 VEKLDPALIRRGRMDKHI 392
+ LDPAL+R GR D+ +
Sbjct: 399 PDVLDPALLRPGRFDRQV 416
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL---EL 277
E++E +V ++ + ++G +G LLYGPPGTGK+ M A A N L +L
Sbjct: 182 ELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241
Query: 278 TA--VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332
+ D +L + L + + II I++ID G ++ +E S D+E
Sbjct: 242 VQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDA----IGTKRFDSEVSG-------DRE 290
Query: 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGRMDKH 391
+ R T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 291 VQR-----------TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRK 336
Query: 392 IELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLMED 427
IE + T + + + + +NV FE + + +D
Sbjct: 337 IEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD 375
>sp|D1C1U7|FTSH1_SPHTD ATP-dependent zinc metalloprotease FtsH 1 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH1 PE=3
SV=1
Length = 653
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 33/206 (16%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF +A E K E++E +V F K D +A +G RG LL GPPGTGK+ + A+A
Sbjct: 161 TFADVAGVEEAKEELVE-VVEFLKYPDKFASLGARIPRGVLLVGPPGTGKTLLSRAVAGE 219
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAE 319
+ + E+ + +R L + + I+ I++ID G+++
Sbjct: 220 AGVPFFSISGSEFVEMFVGVGASRVRDLFDQAKRNAPCIVFIDEIDA----VGRQRGAGL 275
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
S DE+E+ TL+ +L +DG S +++ TN + LD
Sbjct: 276 GGSHDEREQ------------------TLNQILVEMDGFDSTT--NVIVIAATNRPDVLD 315
Query: 380 PALIRRGRMDKHIELSYCTFQGFKVL 405
PAL+R GR D+ + L G + +
Sbjct: 316 PALLRPGRFDRQVVLDRPDIAGRRAI 341
>sp|O82150|FTSH_TOBAC ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana
tabacum GN=FTSH PE=2 SV=2
Length = 714
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 34/213 (15%)
Query: 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
V E TF +A + KLE+ +++V F K+ D Y +G +G LL GPPGTGK+ +
Sbjct: 245 VPETGVTFADVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 303
Query: 262 AAMANLLNYDVYD------LELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQ 313
A+A + +EL + +R L + SK+ I+ I++ID G+
Sbjct: 304 RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA----VGR 359
Query: 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTN 373
++ +DE+E+ T++ LL +DG G +++ TN
Sbjct: 360 QRGAGMGGGNDEREQ------------------TINQLLTEMDGFSGNSG--VIVLAATN 399
Query: 374 YVEKLDPALIRRGRMDKHIELSYCTFQG-FKVL 405
+ LD AL+R GR D+ + + G K+L
Sbjct: 400 RPDVLDSALLRPGRFDRQVTVDRPDVAGRIKIL 432
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL---EL 277
E++E +V ++ + ++G +G LLYGPPGTGK+ M A A N L +L
Sbjct: 182 ELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241
Query: 278 TA--VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332
+ D +L + L + + II I++ID G ++ +E S D+E
Sbjct: 242 VQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDA----IGTKRFDSEVSG-------DRE 290
Query: 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGRMDKH 391
+ R T+ LLN +DG S ER+ ++ TN + LDPAL+R GR+D+
Sbjct: 291 VQR-----------TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRK 336
Query: 392 IELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLMED 427
IE + T + + + + +NV FE + + +D
Sbjct: 337 IEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDD 375
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 35/219 (15%)
Query: 229 FSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL------ELTAVKD 282
F +S + Y ++G +G LL GPPGTGK+ + A+A + L E+
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 283 NTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKE 340
+R + + +K+ II I+++D G+ + DE+E+
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDA----LGKSRGAGIMGGHDEREQ------------ 343
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
TL+ LL +DG S G +++ TN E LDPAL+R GR D+H+ + +
Sbjct: 344 ------TLNALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHVLVDRPDIK 395
Query: 401 GFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENL 439
G + + K ++V+ L T+ L + ITP V +L
Sbjct: 396 GREDILK--VHVKNVKLDPTVD-LHKVAAITPGFVGADL 431
>sp|Q9FH02|FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 5, chloroplastic
OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1
Length = 704
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
V E TF +A + KLE+ +++V F K+ D Y +G +G LL GPPGTGK+ +
Sbjct: 242 VPETGVTFGDVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 300
Query: 262 AAMANLLNYDVYD------LELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQ 313
A+A + +EL + +R L + SK+ I+ I++ID G+
Sbjct: 301 RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA----VGR 356
Query: 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTN 373
++ +DE+E+ T++ LL +DG G +++ TN
Sbjct: 357 QRGAGMGGGNDEREQ------------------TINQLLTEMDGFSGNSG--VIVLAATN 396
Query: 374 YVEKLDPALIRRGRMDKHI 392
+ LD AL+R GR D+ +
Sbjct: 397 RPDVLDSALLRPGRFDRQV 415
>sp|P73179|FTSH1_SYNY3 ATP-dependent zinc metalloprotease FtsH 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH1 PE=2 SV=1
Length = 665
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 34/240 (14%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F+ +A E K E+ +++VTF K + + IG RG LL GPPGTGK+ + A+A
Sbjct: 210 FDDVAGIDEAKEEL-QEVVTFLKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEA 268
Query: 269 NYDVYDL------ELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRKKKAEK 320
+ + E+ + +R L + + ++ I++ID G+++
Sbjct: 269 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDA----VGRQRGVGYG 324
Query: 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP 380
+DE+E+ TL+ LL +DG G +++ TN + LD
Sbjct: 325 GGNDEREQ------------------TLNQLLTEMDGFEGNSG--IIVIAATNRPDVLDL 364
Query: 381 ALIRRGRMDKHIELSYCTFQGFK-VLAKNYLNVETHTLFETIQKLMEDTKITPADVAENL 439
AL+R GR D+ + + Y QG + +LA + N + H + T AD+A L
Sbjct: 365 ALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVL 424
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 32/207 (15%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A E K E+ E +V F K Y +G +G LL GPPGTGK+ + A A
Sbjct: 172 TFDDVAGVEEAKTELSE-VVDFLKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGE 230
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQRKKKAE 319
+ + EL +R L + ++ I+ I+++D + R A
Sbjct: 231 AGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDA---IGKSRASGAF 287
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
+DE+E+ TL+ LL +DG +SA G +++ TN E LD
Sbjct: 288 MGGNDEREQ------------------TLNQLLTEMDG-FSAAGATVIVLAATNRPETLD 328
Query: 380 PALIRRGRMDKHIELSYCTFQG-FKVL 405
PAL+R GR D+ + + G K+L
Sbjct: 329 PALLRPGRFDRQVLVDRPDLAGRLKIL 355
>sp|Q39102|FTSH1_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic
OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2
Length = 716
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 33/208 (15%)
Query: 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
V E +F +A + KLE+ +++V F K+ D Y +G +G LL GPPGTGK+ +
Sbjct: 254 VPETGVSFADVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 312
Query: 262 AAMANLLNYDVYD------LELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQ 313
A+A + +EL + +R L + SK+ I+ I++ID G+
Sbjct: 313 RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA----VGR 368
Query: 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTN 373
++ +DE+E+ T++ LL +DG G +++ TN
Sbjct: 369 QRGAGMGGGNDEREQ------------------TINQLLTEMDGFSGNSG--VIVLAATN 408
Query: 374 YVEKLDPALIRRGRMDKHIELSYCTFQG 401
+ LD AL+R GR D+ + + G
Sbjct: 409 RPDVLDSALLRPGRFDRQVTVDRPDVAG 436
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL---EL 277
E++E +V ++ + ++G +G LLYGPPGTGK+ M A A N L +L
Sbjct: 181 ELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQL 240
Query: 278 TA--VKDNTELRK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332
+ D +L + L + S II I++ID G ++ +E S D+E
Sbjct: 241 VQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA----IGTKRFDSEVSG-------DRE 289
Query: 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERL-IVFTTNYVEKLDPALIRRGRMDKH 391
+ R T+ LLN +DG S +R+ ++ TN + LDPAL+R GR+D+
Sbjct: 290 VQR-----------TMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRK 335
Query: 392 IELSYCTFQGFKVLAKNY---LNVETHTLFETIQKLMED 427
IE + T + + + + +NV FE + + +D
Sbjct: 336 IEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDD 374
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL 267
TF+ +A E K E+ +++V F K + R+G +G LL GPPGTGK+ + A+A
Sbjct: 152 TFQDVAGIEEAKEEL-QEVVQFLKDPHKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGE 210
Query: 268 LNYDVYDL------ELTAVKDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAE 319
N ++L E+ +R + + + II I++ID G+ +
Sbjct: 211 ANVPFFNLSGSDFVEMFVGVGAARVRDMFEQGKKNAPCIIFIDEIDA----VGRHRGAGL 266
Query: 320 KSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLD 379
DE+E+ TL+ LL +DG S G ++V TN + LD
Sbjct: 267 GGGHDEREQ------------------TLNQLLVEMDGFESTEG--VIMVAATNRPDVLD 306
Query: 380 PALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411
PAL+R GR D+ + + G + K ++N
Sbjct: 307 PALLRPGRFDRQVTVPNPDILGRTQILKVHMN 338
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 223 IEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD 282
+E++V F K Y +G +G LL GPPGTGK+ + A A D + +
Sbjct: 293 LEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMS------ 346
Query: 283 NTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEG 342
+E ++ + +K I DL Q + +A + ++LD ++ PK++
Sbjct: 347 GSEFDEVYVGVGAKRI---------RDLFAQARSRA--PAIIFIDELDAIGGKRNPKDQA 395
Query: 343 SSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGF 402
+K TL+ LL +DG G +I+ TN+ E LD AL R GR DK + + +G
Sbjct: 396 YAKQTLNQLLVELDGFSQTSG--IIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGR 453
Query: 403 KVLAKNYL 410
+ K+++
Sbjct: 454 ADILKHHM 461
>sp|Q5Z974|FTSH1_ORYSJ ATP-dependent zinc metalloprotease FTSH 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH1 PE=2 SV=1
Length = 686
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 49/255 (19%)
Query: 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
V E TF +A + KLE+ +++V F K+ D Y +G +G LL GPPGTGK+ +
Sbjct: 224 VPETGVTFVDVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 282
Query: 262 AAMANLLNYDVYD------LELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQ 313
A+A + +EL + +R L + +K+ I+ I++ID G+
Sbjct: 283 RAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDA----VGR 338
Query: 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTN 373
++ +DE+E+ T++ LL +DG G +++ TN
Sbjct: 339 QRGAGLGGGNDEREQ------------------TINQLLTEMDGFAGNSG--VIVLAATN 378
Query: 374 YVEKLDPALIRRGRMDKHIELSYCTFQG-FKVLAKNYLNVETHTLFETIQKLMEDTKI-- 430
+ LD AL+R GR D+ + + G K+L E H+ + + K ++ KI
Sbjct: 379 RPDVLDAALLRPGRFDRQVTVDRPDVAGRVKIL-------EVHSRGKALAKDVDFEKIAR 431
Query: 431 -----TPADVAENLM 440
T AD+ +NLM
Sbjct: 432 RTPGFTGADL-QNLM 445
>sp|P51327|FTSH_PORPU ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea
GN=ftsH PE=3 SV=1
Length = 628
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 40/236 (16%)
Query: 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL- 275
E+ E +++VTF K + + +G +G LL GPPGTGK+ + A+A + +
Sbjct: 179 EEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 238
Query: 276 -----ELTAVKDNTELRKLL--IETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEK 328
E+ + +R L + + I+ I++ID G+++ +DE+E+
Sbjct: 239 GSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDA----VGRQRGTGVGGGNDEREQ 294
Query: 329 LDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRM 388
TL+ LL +DG G +++ TN + LD AL+R GR
Sbjct: 295 ------------------TLNQLLTEMDGFEGNTG--VIVIAATNRADILDSALLRPGRF 334
Query: 389 DKHIELSYCTFQG----FKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLM 440
D+ + + F+G +V AKN +E+ ETI + + AD+A NL+
Sbjct: 335 DRQVSVDVPDFRGRLAILEVHAKNK-KMESKVSLETIAR--RTPGFSGADLA-NLL 386
>sp|D3FFN2|FTSH_MYCGH ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma gallisepticum
(strain R(high / passage 156)) GN=ftsH PE=3 SV=1
Length = 765
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 33/195 (16%)
Query: 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268
F +A E+K E+IE LV + K Y ++G RG +LYGPPGTGK+ + A+A
Sbjct: 273 FTDVAGIEEEKSELIE-LVDYLKRPGKYVQMGARTPRGVVLYGPPGTGKTLLAKAVAGEA 331
Query: 269 NYDVYDLELTAVKD------NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEK 320
+ + +A +D +R L + + II I++ID G ++ K E
Sbjct: 332 GVPFFQVTGSAFEDMLVGVGAKRVRNLFAKAKKAAPCIIFIDEIDS----VGSKRGKYEI 387
Query: 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP 380
S+ ++ TL+ LL +DG + G +++ TN ++ LD
Sbjct: 388 SAGSATDQ------------------TLNQLLAEMDGFSTRTG--IIVMAATNRLDVLDD 427
Query: 381 ALIRRGRMDKHIELS 395
AL+R GR D+HI+++
Sbjct: 428 ALLRPGRFDRHIQVN 442
>sp|Q9BAE0|FTSH_MEDSA ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Medicago
sativa GN=FTSH PE=2 SV=1
Length = 706
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI 261
V E TF +A + KLE+ +++V F K+ D Y +G +G LL GPPGTGK+ +
Sbjct: 245 VPETGVTFADVAGADQAKLEL-QEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLA 303
Query: 262 AAMANLLNYDVYD------LELTAVKDNTELRKLLIETTSKS--IIVIEDIDCSLDLTGQ 313
A+A + +EL + +R L + SK+ I+ I++ID G+
Sbjct: 304 RAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDA----VGR 359
Query: 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTN 373
++ +DE+E+ T++ LL +DG G +++ TN
Sbjct: 360 QRGAGLGGGNDEREQ------------------TINQLLTEMDGFSGNSG--VIVLAATN 399
Query: 374 YVEKLDPALIRRGRMDKHI 392
+ LD AL+R GR D+ +
Sbjct: 400 RPDVLDSALLRPGRFDRQV 418
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 41/210 (19%)
Query: 231 KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA-------VKDN 283
K + + ++G +G LLYGPPGTGK+ + A+AN + D + L A + +
Sbjct: 200 KEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVAN--HADATFIRLAAPELVQKFIGEG 257
Query: 284 TELRKLLIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKE 340
L + L E + SII I++ID G R+ + S D+E+ R
Sbjct: 258 ARLVRELFELAREKAPSIIFIDEIDA----IGARRMRDATSG-------DREVQR----- 301
Query: 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400
TL+ LL +DG + ++ TN + LDPAL+R GR D+HI++ +
Sbjct: 302 ------TLTQLLAEMDGFDPL--DDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEE 353
Query: 401 G----FKVLAKNYLNVETHTLFETIQKLME 426
G FK+ ++ +N+ + + K+ E
Sbjct: 354 GRYEIFKIHTRD-MNLAEDVDLQKLAKITE 382
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,360,390
Number of Sequences: 539616
Number of extensions: 7981970
Number of successful extensions: 77402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 555
Number of HSP's that attempted gapping in prelim test: 68276
Number of HSP's gapped (non-prelim): 7766
length of query: 500
length of database: 191,569,459
effective HSP length: 122
effective length of query: 378
effective length of database: 125,736,307
effective search space: 47528324046
effective search space used: 47528324046
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)