Query 041423
Match_columns 500
No_of_seqs 406 out of 3279
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:51:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 8.8E-99 2E-103 754.6 39.8 443 8-473 2-445 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 6.5E-41 1.4E-45 326.7 18.6 245 203-482 144-396 (406)
3 KOG0734 AAA+-type ATPase conta 100.0 1.1E-36 2.3E-41 308.1 15.8 229 206-474 300-537 (752)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-36 3.5E-41 315.6 17.6 245 204-486 428-682 (693)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-34 8.8E-39 293.6 18.0 218 207-461 187-414 (802)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 5.6E-34 1.2E-38 292.6 18.4 208 205-439 506-726 (802)
7 KOG0728 26S proteasome regulat 100.0 2.5E-33 5.5E-38 260.6 16.9 239 205-478 142-388 (404)
8 KOG0731 AAA+-type ATPase conta 100.0 2.1E-33 4.6E-38 300.6 17.9 241 204-478 305-553 (774)
9 KOG0727 26S proteasome regulat 100.0 5.2E-33 1.1E-37 258.9 15.2 240 205-479 150-397 (408)
10 KOG0736 Peroxisome assembly fa 100.0 2E-32 4.3E-37 287.5 18.6 229 205-468 667-905 (953)
11 KOG0726 26S proteasome regulat 100.0 1.2E-32 2.6E-37 261.1 12.1 241 203-478 178-426 (440)
12 KOG0738 AAA+-type ATPase [Post 100.0 7.6E-32 1.7E-36 264.7 17.4 221 206-464 208-438 (491)
13 PTZ00454 26S protease regulato 100.0 1.6E-31 3.5E-36 275.9 19.9 242 204-480 139-388 (398)
14 KOG0652 26S proteasome regulat 100.0 7.2E-32 1.6E-36 252.3 15.5 246 203-483 164-417 (424)
15 COG1223 Predicted ATPase (AAA+ 100.0 4.2E-31 9.2E-36 247.2 18.5 230 206-478 117-355 (368)
16 COG0465 HflB ATP-dependent Zn 100.0 9.1E-31 2E-35 276.2 16.8 281 158-478 100-390 (596)
17 KOG0729 26S proteasome regulat 100.0 1.5E-30 3.3E-35 244.1 14.5 244 201-479 168-419 (435)
18 PTZ00361 26 proteosome regulat 100.0 5.2E-30 1.1E-34 266.3 19.5 243 203-480 176-426 (438)
19 PRK03992 proteasome-activating 100.0 6.6E-30 1.4E-34 264.9 19.5 247 203-484 124-378 (389)
20 TIGR03689 pup_AAA proteasome A 100.0 7.8E-30 1.7E-34 268.3 18.4 183 204-412 176-380 (512)
21 KOG0735 AAA+-type ATPase [Post 100.0 1.3E-29 2.9E-34 264.0 18.7 222 207-463 664-894 (952)
22 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-29 3.2E-34 270.7 18.4 211 204-439 49-268 (495)
23 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-29 7.7E-34 279.5 19.9 207 205-437 448-663 (733)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 6.9E-29 1.5E-33 261.5 19.0 202 205-437 223-435 (489)
25 COG0464 SpoVK ATPases of the A 100.0 9.3E-29 2E-33 265.1 19.8 239 204-478 236-483 (494)
26 CHL00176 ftsH cell division pr 100.0 2E-28 4.3E-33 265.6 17.2 212 203-439 176-396 (638)
27 KOG0651 26S proteasome regulat 100.0 1.2E-28 2.7E-33 236.0 10.5 239 208-484 130-379 (388)
28 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.9E-28 8.5E-33 276.3 15.8 210 232-480 1618-1879(2281)
29 KOG0739 AAA+-type ATPase [Post 100.0 2.9E-28 6.3E-33 232.0 12.0 200 207-435 130-339 (439)
30 TIGR01242 26Sp45 26S proteasom 100.0 3E-27 6.5E-32 243.8 18.6 240 203-477 115-362 (364)
31 PLN00020 ribulose bisphosphate 99.9 8.6E-27 1.9E-31 231.5 20.5 154 234-413 138-314 (413)
32 KOG0737 AAA+-type ATPase [Post 99.9 1.8E-27 4E-32 234.0 15.1 221 207-465 89-318 (386)
33 PRK10733 hflB ATP-dependent me 99.9 1.4E-26 3E-31 253.8 19.0 235 205-475 147-389 (644)
34 TIGR01243 CDC48 AAA family ATP 99.9 4.2E-24 9E-29 238.8 19.4 206 205-437 173-387 (733)
35 KOG0732 AAA+-type ATPase conta 99.9 1.1E-24 2.4E-29 239.4 13.3 222 204-462 259-493 (1080)
36 KOG0730 AAA+-type ATPase [Post 99.9 1.1E-23 2.4E-28 220.0 16.4 206 205-440 180-395 (693)
37 KOG0740 AAA+-type ATPase [Post 99.9 2.3E-23 5.1E-28 212.0 14.5 218 207-462 150-375 (428)
38 KOG0741 AAA+-type ATPase [Post 99.9 1.8E-23 4E-28 212.2 13.3 181 232-439 244-448 (744)
39 PF14363 AAA_assoc: Domain ass 99.9 1.2E-22 2.7E-27 168.8 10.7 96 30-127 1-97 (98)
40 PF00004 AAA: ATPase family as 99.8 1.9E-19 4.1E-24 157.8 11.1 123 247-396 1-132 (132)
41 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-17 3.1E-22 165.1 18.0 172 205-411 350-529 (630)
42 PF05496 RuvB_N: Holliday junc 99.8 2.2E-17 4.8E-22 154.8 17.2 165 204-414 18-196 (233)
43 KOG0744 AAA+-type ATPase [Post 99.7 4.9E-18 1.1E-22 164.2 10.9 178 209-411 141-341 (423)
44 KOG2004 Mitochondrial ATP-depe 99.7 5.1E-17 1.1E-21 171.0 17.4 221 211-477 412-652 (906)
45 COG0466 Lon ATP-dependent Lon 99.7 4.7E-17 1E-21 172.2 16.2 183 212-435 325-523 (782)
46 TIGR02881 spore_V_K stage V sp 99.7 3.1E-16 6.6E-21 154.6 21.1 169 209-413 5-194 (261)
47 PF05673 DUF815: Protein of un 99.7 9.7E-17 2.1E-21 152.5 16.1 172 197-414 14-211 (249)
48 PRK00080 ruvB Holliday junctio 99.7 4.8E-16 1E-20 158.2 19.0 163 205-413 20-196 (328)
49 CHL00181 cbbX CbbX; Provisiona 99.7 7.7E-16 1.7E-20 153.2 19.7 169 210-413 23-212 (287)
50 TIGR02880 cbbX_cfxQ probable R 99.7 1.9E-15 4.1E-20 150.4 20.1 168 211-413 23-211 (284)
51 TIGR00763 lon ATP-dependent pr 99.7 1.4E-15 3E-20 170.9 20.6 158 211-410 321-505 (775)
52 TIGR00635 ruvB Holliday juncti 99.7 1.9E-15 4E-20 152.4 17.8 159 208-412 2-174 (305)
53 COG2255 RuvB Holliday junction 99.6 1.7E-15 3.7E-20 144.9 13.8 172 205-412 21-196 (332)
54 PRK04195 replication factor C 99.6 8.6E-15 1.9E-19 156.5 19.4 161 202-412 6-175 (482)
55 PRK14962 DNA polymerase III su 99.6 1.6E-14 3.5E-19 152.7 19.0 153 204-411 8-190 (472)
56 PRK12323 DNA polymerase III su 99.6 3.2E-14 7E-19 152.0 18.3 155 204-413 10-199 (700)
57 PRK07003 DNA polymerase III su 99.6 4E-14 8.7E-19 153.0 19.2 155 204-413 10-194 (830)
58 COG2256 MGS1 ATPase related to 99.6 2.5E-14 5.4E-19 143.0 16.2 196 205-464 19-222 (436)
59 PRK14960 DNA polymerase III su 99.6 5.2E-14 1.1E-18 150.7 17.8 154 204-412 9-192 (702)
60 PRK14956 DNA polymerase III su 99.6 6.7E-14 1.5E-18 146.1 18.2 153 204-411 12-194 (484)
61 COG2607 Predicted ATPase (AAA+ 99.6 6.9E-14 1.5E-18 130.8 15.1 170 197-412 47-241 (287)
62 PRK14961 DNA polymerase III su 99.6 1.4E-13 3.1E-18 141.9 19.0 153 205-412 11-193 (363)
63 PHA02544 44 clamp loader, smal 99.6 2.8E-13 6.1E-18 137.2 20.0 157 197-410 10-173 (316)
64 PRK10787 DNA-binding ATP-depen 99.6 2.5E-13 5.4E-18 151.7 21.2 159 209-410 320-506 (784)
65 PLN03025 replication factor C 99.5 1.1E-13 2.3E-18 140.5 16.4 154 203-412 6-173 (319)
66 PRK14964 DNA polymerase III su 99.5 1.9E-13 4.1E-18 144.1 18.1 153 205-412 8-190 (491)
67 TIGR02639 ClpA ATP-dependent C 99.5 1.6E-13 3.4E-18 153.6 17.2 157 205-411 177-359 (731)
68 PRK14958 DNA polymerase III su 99.5 2E-13 4.2E-18 145.9 17.0 153 204-411 10-192 (509)
69 PRK06645 DNA polymerase III su 99.5 3.6E-13 7.7E-18 143.1 18.8 154 204-412 15-202 (507)
70 TIGR02397 dnaX_nterm DNA polym 99.5 7.2E-13 1.6E-17 136.3 20.1 155 204-413 8-192 (355)
71 PRK07764 DNA polymerase III su 99.5 9E-13 1.9E-17 147.3 21.1 154 203-411 8-193 (824)
72 PRK07994 DNA polymerase III su 99.5 6.4E-13 1.4E-17 144.1 19.2 153 205-412 11-193 (647)
73 PRK13342 recombination factor 99.5 5.9E-13 1.3E-17 139.7 18.4 149 204-411 6-165 (413)
74 PRK07940 DNA polymerase III su 99.5 5.4E-13 1.2E-17 138.0 17.5 155 208-408 3-187 (394)
75 PRK14963 DNA polymerase III su 99.5 6.1E-13 1.3E-17 141.9 18.2 153 204-411 8-189 (504)
76 PRK05563 DNA polymerase III su 99.5 6.3E-13 1.4E-17 143.8 18.1 153 205-412 11-193 (559)
77 KOG0735 AAA+-type ATPase [Post 99.5 7.5E-13 1.6E-17 139.7 17.8 193 210-436 408-614 (952)
78 PRK14949 DNA polymerase III su 99.5 6.8E-13 1.5E-17 146.2 17.9 154 204-412 10-193 (944)
79 PRK14951 DNA polymerase III su 99.5 6.2E-13 1.3E-17 143.9 17.2 154 204-412 10-198 (618)
80 PRK08691 DNA polymerase III su 99.5 5.6E-13 1.2E-17 144.1 16.7 155 204-413 10-194 (709)
81 PRK05896 DNA polymerase III su 99.5 8.1E-13 1.8E-17 141.5 17.7 153 204-411 10-192 (605)
82 KOG0736 Peroxisome assembly fa 99.5 4.8E-13 1E-17 142.4 15.4 171 240-441 427-608 (953)
83 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.6E-17 129.0 17.3 146 217-412 5-200 (262)
84 PRK14957 DNA polymerase III su 99.5 1.1E-12 2.3E-17 140.4 18.2 152 205-411 11-192 (546)
85 PRK14970 DNA polymerase III su 99.5 1.4E-12 3.1E-17 134.9 18.6 153 204-411 11-181 (367)
86 PRK14952 DNA polymerase III su 99.5 1.2E-12 2.6E-17 141.2 18.1 154 204-412 7-192 (584)
87 PRK14969 DNA polymerase III su 99.5 8E-13 1.7E-17 142.1 15.9 152 205-411 11-192 (527)
88 PRK07133 DNA polymerase III su 99.5 1.8E-12 3.9E-17 141.4 18.4 153 204-411 12-191 (725)
89 PRK14959 DNA polymerase III su 99.5 2E-12 4.3E-17 139.2 18.2 154 204-412 10-193 (624)
90 PRK11034 clpA ATP-dependent Cl 99.4 1.8E-12 3.8E-17 143.9 17.3 155 208-411 184-363 (758)
91 PRK14965 DNA polymerase III su 99.4 1.7E-12 3.6E-17 141.2 16.7 152 205-411 11-192 (576)
92 TIGR03345 VI_ClpV1 type VI sec 99.4 7.9E-13 1.7E-17 149.3 14.4 156 205-411 182-364 (852)
93 PRK06893 DNA replication initi 99.4 2.6E-12 5.7E-17 124.1 16.2 162 201-411 7-175 (229)
94 PRK10865 protein disaggregatio 99.4 4.1E-13 8.8E-18 152.0 12.1 155 206-411 174-355 (857)
95 PRK11034 clpA ATP-dependent Cl 99.4 2.3E-12 5E-17 143.0 17.2 159 211-411 459-667 (758)
96 PRK14953 DNA polymerase III su 99.4 5.8E-12 1.3E-16 133.9 19.4 154 204-412 10-193 (486)
97 PRK05342 clpX ATP-dependent pr 99.4 3.7E-12 8E-17 132.5 17.4 100 209-308 69-186 (412)
98 PRK06305 DNA polymerase III su 99.4 4.5E-12 9.7E-17 133.9 18.1 153 204-411 11-194 (451)
99 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.6E-12 5.6E-17 123.6 14.5 158 203-410 8-172 (226)
100 PRK09111 DNA polymerase III su 99.4 5.2E-12 1.1E-16 137.0 18.3 154 204-412 18-206 (598)
101 PRK12402 replication factor C 99.4 4.4E-12 9.6E-17 129.4 16.9 154 203-412 8-199 (337)
102 PRK14955 DNA polymerase III su 99.4 3.1E-12 6.6E-17 133.5 16.0 153 204-411 10-200 (397)
103 PRK14954 DNA polymerase III su 99.4 6E-12 1.3E-16 136.7 18.5 152 205-411 11-200 (620)
104 KOG0989 Replication factor C, 99.4 1.2E-12 2.5E-17 126.8 11.0 154 202-411 28-202 (346)
105 PRK08451 DNA polymerase III su 99.4 8.1E-12 1.8E-16 133.0 18.6 154 204-412 8-191 (535)
106 TIGR02928 orc1/cdc6 family rep 99.4 1.8E-11 4E-16 126.4 20.2 157 210-411 15-213 (365)
107 PRK06647 DNA polymerase III su 99.4 7.7E-12 1.7E-16 135.0 17.8 152 204-410 10-191 (563)
108 TIGR00382 clpX endopeptidase C 99.4 1.1E-11 2.4E-16 128.4 18.1 178 209-410 75-331 (413)
109 PRK14950 DNA polymerase III su 99.4 2E-11 4.4E-16 133.2 20.8 153 204-411 10-193 (585)
110 PRK14971 DNA polymerase III su 99.4 9.8E-12 2.1E-16 135.6 18.1 153 204-411 11-194 (614)
111 TIGR02902 spore_lonB ATP-depen 99.4 4.3E-12 9.3E-17 136.8 14.9 181 203-412 58-278 (531)
112 TIGR03346 chaperone_ClpB ATP-d 99.4 2.7E-12 5.9E-17 145.8 13.4 157 205-411 168-350 (852)
113 CHL00095 clpC Clp protease ATP 99.4 5.6E-12 1.2E-16 142.8 15.8 152 208-410 177-354 (821)
114 PRK14948 DNA polymerase III su 99.4 1.5E-11 3.2E-16 134.3 18.4 153 204-411 10-194 (620)
115 PRK13341 recombination factor 99.4 8.7E-12 1.9E-16 137.8 16.8 190 205-459 23-222 (725)
116 PRK00411 cdc6 cell division co 99.4 3.5E-11 7.7E-16 125.6 20.1 157 209-411 29-221 (394)
117 PRK08903 DnaA regulatory inact 99.3 3.2E-11 6.9E-16 116.3 16.6 154 201-410 9-170 (227)
118 TIGR01650 PD_CobS cobaltochela 99.3 7.9E-12 1.7E-16 124.9 12.1 129 244-410 64-233 (327)
119 PRK00440 rfc replication facto 99.3 5.7E-11 1.2E-15 120.2 18.5 156 202-413 9-177 (319)
120 TIGR02639 ClpA ATP-dependent C 99.3 2.5E-11 5.4E-16 136.0 16.8 157 210-412 454-664 (731)
121 PHA02244 ATPase-like protein 99.3 8.9E-11 1.9E-15 118.6 18.5 135 214-401 100-265 (383)
122 PTZ00112 origin recognition co 99.3 7.9E-11 1.7E-15 128.4 18.7 192 210-461 755-988 (1164)
123 PF07728 AAA_5: AAA domain (dy 99.3 3.3E-12 7.1E-17 113.4 6.3 62 246-307 1-77 (139)
124 TIGR00362 DnaA chromosomal rep 99.3 6.8E-11 1.5E-15 124.0 17.2 165 202-413 102-284 (405)
125 PRK13407 bchI magnesium chelat 99.3 2.7E-11 5.9E-16 122.5 13.6 156 205-411 3-217 (334)
126 PRK08727 hypothetical protein; 99.3 2E-10 4.4E-15 111.2 19.2 156 202-410 11-175 (233)
127 PRK00149 dnaA chromosomal repl 99.3 7.6E-11 1.7E-15 125.2 17.6 165 202-412 114-295 (450)
128 COG0464 SpoVK ATPases of the A 99.3 5.4E-11 1.2E-15 127.9 16.6 192 231-462 5-204 (494)
129 PRK08084 DNA replication initi 99.3 1.3E-10 2.8E-15 112.7 17.0 160 203-410 15-180 (235)
130 COG0714 MoxR-like ATPases [Gen 99.3 1.9E-10 4.1E-15 117.2 18.8 130 244-411 43-204 (329)
131 KOG2028 ATPase related to the 99.3 2.5E-11 5.4E-16 119.7 11.2 151 205-410 133-294 (554)
132 CHL00081 chlI Mg-protoporyphyr 99.3 5.3E-11 1.1E-15 120.7 14.0 155 206-411 13-233 (350)
133 cd00009 AAA The AAA+ (ATPases 99.3 7.6E-11 1.7E-15 103.8 13.5 115 244-396 19-151 (151)
134 COG0542 clpA ATP-binding subun 99.3 6E-11 1.3E-15 129.6 14.7 161 210-412 491-707 (786)
135 PRK07471 DNA polymerase III su 99.2 5.2E-10 1.1E-14 115.0 19.6 153 204-411 13-214 (365)
136 COG1474 CDC6 Cdc6-related prot 99.2 3.2E-10 6.8E-15 116.4 17.6 214 212-484 19-267 (366)
137 PRK05564 DNA polymerase III su 99.2 1.1E-09 2.5E-14 110.8 21.3 148 208-410 2-165 (313)
138 COG2812 DnaX DNA polymerase II 99.2 7.8E-11 1.7E-15 124.2 12.8 154 205-413 11-194 (515)
139 TIGR02903 spore_lon_C ATP-depe 99.2 2.4E-10 5.2E-15 125.2 16.9 178 205-411 149-367 (615)
140 PRK14088 dnaA chromosomal repl 99.2 1.5E-10 3.2E-15 122.2 14.6 166 202-412 97-278 (440)
141 PRK12422 chromosomal replicati 99.2 3.5E-10 7.5E-15 119.2 17.2 129 245-412 142-286 (445)
142 PRK05201 hslU ATP-dependent pr 99.2 1.3E-10 2.8E-15 119.1 13.3 69 211-279 16-85 (443)
143 TIGR02030 BchI-ChlI magnesium 99.2 1.2E-10 2.6E-15 118.2 12.4 153 208-411 2-220 (337)
144 TIGR00390 hslU ATP-dependent p 99.2 2.3E-10 4.9E-15 117.3 14.0 68 211-278 13-81 (441)
145 PRK10865 protein disaggregatio 99.2 1.1E-09 2.3E-14 124.4 20.9 161 209-411 567-780 (857)
146 TIGR00678 holB DNA polymerase 99.2 2.8E-10 6E-15 106.5 13.4 124 243-409 13-167 (188)
147 PRK14086 dnaA chromosomal repl 99.2 3.9E-10 8.4E-15 121.2 15.5 132 245-413 315-462 (617)
148 PRK09112 DNA polymerase III su 99.2 1.9E-09 4E-14 110.3 19.8 151 204-409 17-212 (351)
149 PRK05642 DNA replication initi 99.2 8.5E-10 1.8E-14 106.9 15.9 163 202-410 11-179 (234)
150 TIGR03346 chaperone_ClpB ATP-d 99.2 9.9E-10 2.1E-14 125.0 18.6 160 210-411 565-777 (852)
151 CHL00095 clpC Clp protease ATP 99.1 9.2E-10 2E-14 124.9 17.5 160 210-411 509-733 (821)
152 TIGR03345 VI_ClpV1 type VI sec 99.1 4.4E-10 9.5E-15 127.2 13.1 157 210-412 566-782 (852)
153 PRK06620 hypothetical protein; 99.1 1.4E-09 3.1E-14 103.8 14.6 148 203-411 9-161 (214)
154 PF07726 AAA_3: ATPase family 99.1 1E-10 2.3E-15 100.6 5.9 105 246-388 1-129 (131)
155 PRK08116 hypothetical protein; 99.1 1.3E-09 2.8E-14 107.7 14.5 148 208-399 83-251 (268)
156 PF00308 Bac_DnaA: Bacterial d 99.1 1.9E-09 4.1E-14 103.4 15.2 132 246-413 36-182 (219)
157 PRK07952 DNA replication prote 99.1 7E-10 1.5E-14 107.6 12.0 97 203-306 65-173 (244)
158 KOG1969 DNA replication checkp 99.1 3.8E-09 8.3E-14 112.6 17.8 109 196-306 259-398 (877)
159 PRK08058 DNA polymerase III su 99.1 2.4E-09 5.3E-14 109.0 14.5 146 208-408 3-180 (329)
160 PRK11331 5-methylcytosine-spec 99.0 2.6E-09 5.6E-14 110.8 14.4 27 244-270 194-220 (459)
161 PRK14087 dnaA chromosomal repl 99.0 4.1E-09 8.9E-14 111.5 16.2 162 206-412 111-290 (450)
162 PF07724 AAA_2: AAA domain (Cd 99.0 7.8E-10 1.7E-14 101.8 8.5 109 245-378 4-133 (171)
163 smart00382 AAA ATPases associa 99.0 1.8E-09 3.8E-14 94.1 10.4 64 245-308 3-91 (148)
164 smart00763 AAA_PrkA PrkA AAA d 99.0 7.8E-09 1.7E-13 104.6 16.3 63 208-277 48-118 (361)
165 PF01078 Mg_chelatase: Magnesi 99.0 1E-09 2.2E-14 102.6 9.1 46 208-268 1-46 (206)
166 PRK05707 DNA polymerase III su 99.0 7.7E-09 1.7E-13 104.9 15.1 124 243-409 21-177 (328)
167 PRK13531 regulatory ATPase Rav 99.0 1.2E-08 2.5E-13 106.9 16.7 127 244-409 39-193 (498)
168 TIGR02442 Cob-chelat-sub cobal 99.0 1.3E-09 2.9E-14 120.0 10.3 153 208-411 2-215 (633)
169 PRK07399 DNA polymerase III su 99.0 2.1E-08 4.6E-13 101.2 18.0 147 208-410 2-195 (314)
170 PRK09087 hypothetical protein; 99.0 9.2E-09 2E-13 99.1 14.1 118 246-412 46-168 (226)
171 COG0542 clpA ATP-binding subun 99.0 5.1E-09 1.1E-13 114.7 13.4 155 208-411 168-347 (786)
172 COG0470 HolB ATPase involved i 99.0 1.1E-08 2.4E-13 103.6 15.2 116 246-404 26-175 (325)
173 PF12775 AAA_7: P-loop contain 99.0 3.3E-09 7.2E-14 104.9 10.7 163 205-411 5-194 (272)
174 TIGR00602 rad24 checkpoint pro 99.0 1.1E-08 2.3E-13 111.5 15.4 208 197-460 73-329 (637)
175 PRK12377 putative replication 99.0 5.9E-09 1.3E-13 101.4 11.9 92 208-306 72-174 (248)
176 PRK08939 primosomal protein Dn 98.9 6.7E-09 1.5E-13 104.3 11.5 96 206-306 123-228 (306)
177 PRK08181 transposase; Validate 98.9 2.5E-08 5.3E-13 98.3 13.7 63 244-306 106-178 (269)
178 smart00350 MCM minichromosome 98.8 1.1E-08 2.4E-13 110.1 9.9 159 211-411 204-401 (509)
179 PF13177 DNA_pol3_delta2: DNA 98.8 1.5E-07 3.3E-12 85.9 15.5 111 243-396 18-160 (162)
180 PRK06964 DNA polymerase III su 98.8 8E-08 1.7E-12 97.6 15.0 57 346-409 147-203 (342)
181 KOG0745 Putative ATP-dependent 98.8 9.7E-08 2.1E-12 96.7 14.5 65 244-308 226-304 (564)
182 KOG0741 AAA+-type ATPase [Post 98.8 2.9E-08 6.4E-13 102.4 10.9 134 245-407 539-683 (744)
183 PRK04132 replication factor C 98.8 1.1E-07 2.3E-12 106.4 15.9 122 247-411 567-703 (846)
184 PRK11608 pspF phage shock prot 98.8 1.2E-07 2.7E-12 96.4 14.7 154 208-411 4-195 (326)
185 COG1219 ClpX ATP-dependent pro 98.8 7E-08 1.5E-12 94.3 11.7 66 244-309 97-176 (408)
186 COG1224 TIP49 DNA helicase TIP 98.8 3.5E-07 7.6E-12 90.8 16.7 63 210-280 39-103 (450)
187 PF00158 Sigma54_activat: Sigm 98.8 5.9E-08 1.3E-12 89.0 10.7 85 212-307 1-105 (168)
188 PRK08699 DNA polymerase III su 98.7 8.4E-08 1.8E-12 97.3 12.5 123 242-407 19-182 (325)
189 TIGR02031 BchD-ChlD magnesium 98.7 8.1E-08 1.8E-12 104.9 12.9 127 246-410 18-174 (589)
190 PRK06526 transposase; Provisio 98.7 4.5E-08 9.8E-13 95.8 9.8 63 244-306 98-170 (254)
191 TIGR02974 phageshock_pspF psp 98.7 1.7E-07 3.7E-12 95.4 13.9 150 212-411 1-188 (329)
192 KOG0991 Replication factor C, 98.7 1.5E-07 3.2E-12 88.3 12.1 93 202-307 19-125 (333)
193 PRK06835 DNA replication prote 98.7 9.2E-08 2E-12 96.9 11.4 62 245-306 184-257 (329)
194 COG0593 DnaA ATPase involved i 98.7 1.9E-07 4.1E-12 96.1 13.5 168 202-413 79-260 (408)
195 PRK11388 DNA-binding transcrip 98.7 2.2E-07 4.7E-12 103.2 15.2 89 208-307 323-428 (638)
196 TIGR01817 nifA Nif-specific re 98.7 1.9E-07 4.1E-12 101.5 14.2 90 207-307 193-302 (534)
197 PRK07993 DNA polymerase III su 98.7 4.6E-07 9.9E-12 92.3 16.0 123 243-408 23-178 (334)
198 COG1239 ChlI Mg-chelatase subu 98.7 2.8E-07 6.1E-12 93.9 14.2 155 206-411 13-233 (423)
199 PF03215 Rad17: Rad17 cell cyc 98.7 4E-07 8.6E-12 97.5 16.0 69 196-274 7-75 (519)
200 COG1484 DnaC DNA replication p 98.7 1.3E-07 2.9E-12 92.6 11.4 88 211-306 80-178 (254)
201 PRK08769 DNA polymerase III su 98.7 5.4E-07 1.2E-11 90.9 16.0 123 243-408 25-183 (319)
202 PRK06921 hypothetical protein; 98.7 1.5E-07 3.3E-12 92.8 11.7 63 244-306 117-188 (266)
203 PF06068 TIP49: TIP49 C-termin 98.7 4.8E-07 1E-11 91.0 14.9 64 209-280 23-88 (398)
204 PRK06871 DNA polymerase III su 98.7 3.3E-07 7.2E-12 92.6 13.8 124 243-409 23-178 (325)
205 PF08740 BCS1_N: BCS1 N termin 98.7 1E-06 2.2E-11 82.4 16.1 134 67-212 33-187 (187)
206 PF01695 IstB_IS21: IstB-like 98.6 3.3E-08 7.1E-13 91.7 5.6 63 244-306 47-119 (178)
207 PRK06090 DNA polymerase III su 98.6 4.3E-07 9.4E-12 91.5 13.8 123 243-408 24-178 (319)
208 TIGR00368 Mg chelatase-related 98.6 1.5E-07 3.3E-12 100.5 10.6 47 207-268 189-235 (499)
209 PRK15424 propionate catabolism 98.6 5.5E-07 1.2E-11 96.8 13.1 90 207-307 216-334 (538)
210 PF12774 AAA_6: Hydrolytic ATP 98.6 1.7E-06 3.8E-11 83.3 15.2 64 244-307 32-96 (231)
211 COG1221 PspF Transcriptional r 98.6 3E-07 6.5E-12 94.4 10.3 158 206-411 74-265 (403)
212 TIGR02329 propionate_PrpR prop 98.6 8.5E-07 1.9E-11 95.4 14.1 92 205-307 207-319 (526)
213 PF14532 Sigma54_activ_2: Sigm 98.6 3.1E-07 6.7E-12 81.5 8.9 77 214-307 2-81 (138)
214 PRK09862 putative ATP-dependen 98.5 3.2E-07 7E-12 97.6 10.5 140 208-400 189-391 (506)
215 TIGR03015 pepcterm_ATPase puta 98.5 7.6E-06 1.6E-10 80.7 19.3 47 214-270 23-69 (269)
216 COG1220 HslU ATP-dependent pro 98.5 2.1E-06 4.6E-11 84.7 14.4 68 212-279 17-85 (444)
217 COG0606 Predicted ATPase with 98.5 8.6E-08 1.9E-12 98.9 5.0 48 206-268 175-222 (490)
218 PF00910 RNA_helicase: RNA hel 98.5 1.1E-07 2.4E-12 80.6 4.9 60 247-306 1-60 (107)
219 PF13173 AAA_14: AAA domain 98.5 8.5E-07 1.8E-11 77.6 10.1 63 245-307 3-73 (128)
220 PRK10820 DNA-binding transcrip 98.5 2.6E-06 5.6E-11 92.1 15.2 92 205-307 199-310 (520)
221 PRK15429 formate hydrogenlyase 98.5 2.5E-06 5.3E-11 95.6 15.4 90 207-307 373-482 (686)
222 PRK09183 transposase/IS protei 98.5 4.8E-07 1E-11 89.0 8.5 63 244-306 102-175 (259)
223 PRK05022 anaerobic nitric oxid 98.4 4E-06 8.7E-11 90.5 14.2 89 208-307 185-293 (509)
224 KOG1942 DNA helicase, TBP-inte 98.4 2.3E-05 5.1E-10 76.0 17.4 54 210-271 38-91 (456)
225 PHA02624 large T antigen; Prov 98.4 1.9E-06 4E-11 92.1 10.4 123 240-395 427-560 (647)
226 PHA00729 NTP-binding motif con 98.3 1.7E-06 3.7E-11 82.5 8.5 27 246-272 19-45 (226)
227 PF01637 Arch_ATPase: Archaeal 98.3 6E-06 1.3E-10 78.9 12.3 134 244-412 20-206 (234)
228 KOG2035 Replication factor C, 98.3 9.9E-06 2.2E-10 78.1 13.1 157 204-416 7-205 (351)
229 PLN03210 Resistant to P. syrin 98.3 2.2E-05 4.7E-10 93.0 18.9 61 200-271 174-234 (1153)
230 PF05729 NACHT: NACHT domain 98.3 9.3E-06 2E-10 73.4 12.5 24 245-268 1-24 (166)
231 KOG1051 Chaperone HSP104 and r 98.3 5.2E-06 1.1E-10 92.7 11.9 91 210-306 562-671 (898)
232 PF03969 AFG1_ATPase: AFG1-lik 98.3 2E-06 4.4E-11 88.3 7.7 97 240-375 58-168 (362)
233 PTZ00111 DNA replication licen 98.2 5E-06 1.1E-10 92.9 10.9 127 246-410 494-657 (915)
234 PRK05917 DNA polymerase III su 98.2 2.1E-05 4.6E-10 78.0 14.1 112 243-397 18-154 (290)
235 KOG1970 Checkpoint RAD17-RFC c 98.2 3.8E-05 8.3E-10 80.4 16.3 72 196-275 70-141 (634)
236 COG1116 TauB ABC-type nitrate/ 98.2 1.3E-06 2.9E-11 83.5 5.1 154 240-398 23-221 (248)
237 TIGR00764 lon_rel lon-related 98.2 1.9E-05 4.1E-10 86.7 14.8 50 207-271 15-64 (608)
238 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.9E-11 73.0 7.4 39 245-283 5-51 (131)
239 PRK10923 glnG nitrogen regulat 98.2 1.5E-05 3.2E-10 85.3 12.8 154 209-411 137-327 (469)
240 PRK05818 DNA polymerase III su 98.2 9E-05 1.9E-09 72.1 16.8 112 243-397 6-147 (261)
241 KOG0990 Replication factor C, 98.2 4.1E-06 8.9E-11 82.3 7.2 153 202-410 33-203 (360)
242 PF05621 TniB: Bacterial TniB 98.1 2.9E-05 6.3E-10 76.8 12.8 200 221-471 44-282 (302)
243 PF00931 NB-ARC: NB-ARC domain 98.1 4.6E-05 1E-09 75.8 14.3 124 244-413 19-173 (287)
244 PHA02774 E1; Provisional 98.1 1.3E-05 2.8E-10 85.5 10.7 58 240-304 430-488 (613)
245 PRK07132 DNA polymerase III su 98.1 1.5E-05 3.3E-10 79.7 10.7 123 243-408 17-160 (299)
246 COG5271 MDN1 AAA ATPase contai 98.1 2.3E-05 5.1E-10 90.0 12.9 128 244-413 1543-1706(4600)
247 TIGR02915 PEP_resp_reg putativ 98.1 4.1E-05 8.9E-10 81.3 14.4 87 209-307 138-245 (445)
248 PRK11361 acetoacetate metaboli 98.1 5.9E-05 1.3E-09 80.4 14.0 87 210-307 143-249 (457)
249 TIGR01818 ntrC nitrogen regula 98.0 7.5E-05 1.6E-09 79.7 14.5 152 210-411 134-323 (463)
250 KOG1514 Origin recognition com 98.0 0.00024 5.3E-09 76.6 17.6 130 246-413 424-592 (767)
251 COG1131 CcmA ABC-type multidru 98.0 2.8E-06 6.2E-11 85.1 3.0 155 238-395 23-219 (293)
252 PRK07276 DNA polymerase III su 98.0 0.0011 2.4E-08 66.0 21.1 119 243-407 23-172 (290)
253 PRK15115 response regulator Gl 98.0 7.9E-05 1.7E-09 79.1 13.2 63 245-307 158-240 (444)
254 PRK07261 topology modulation p 98.0 3.8E-05 8.1E-10 70.8 9.3 30 247-276 3-32 (171)
255 KOG2227 Pre-initiation complex 98.0 0.00029 6.4E-09 72.7 16.3 159 210-414 150-342 (529)
256 PRK13406 bchD magnesium chelat 98.0 5.5E-05 1.2E-09 82.4 11.8 120 245-402 26-174 (584)
257 cd01120 RecA-like_NTPases RecA 97.9 6.4E-05 1.4E-09 67.4 9.8 31 247-277 2-35 (165)
258 COG3829 RocR Transcriptional r 97.9 6E-05 1.3E-09 79.3 10.7 94 203-307 238-352 (560)
259 PRK08118 topology modulation p 97.9 6.4E-05 1.4E-09 69.0 9.8 31 246-276 3-33 (167)
260 PF13207 AAA_17: AAA domain; P 97.9 7.7E-06 1.7E-10 70.4 3.5 29 247-275 2-30 (121)
261 PF05707 Zot: Zonular occluden 97.9 4.4E-05 9.6E-10 71.7 8.6 114 247-397 3-146 (193)
262 COG1120 FepC ABC-type cobalami 97.9 1.9E-05 4.1E-10 76.8 6.2 166 240-413 22-239 (258)
263 COG2884 FtsE Predicted ATPase 97.9 2E-05 4.2E-10 72.3 5.8 150 228-380 10-202 (223)
264 TIGR01069 mutS2 MutS2 family p 97.9 0.00027 5.8E-09 79.7 15.9 23 245-267 323-345 (771)
265 PRK15455 PrkA family serine pr 97.9 2.2E-05 4.8E-10 83.7 6.2 64 207-277 73-137 (644)
266 PRK14722 flhF flagellar biosyn 97.8 7.9E-05 1.7E-09 76.6 10.0 63 244-306 137-226 (374)
267 PF10443 RNA12: RNA12 protein; 97.8 0.00069 1.5E-08 70.0 16.7 44 368-413 186-232 (431)
268 TIGR02237 recomb_radB DNA repa 97.8 0.00013 2.7E-09 69.3 10.6 40 240-279 8-50 (209)
269 PRK00409 recombination and DNA 97.8 0.00012 2.5E-09 82.7 11.6 22 245-266 328-349 (782)
270 PRK13537 nodulation ABC transp 97.8 1.3E-05 2.8E-10 80.9 3.6 32 247-278 36-67 (306)
271 PRK00131 aroK shikimate kinase 97.8 2.5E-05 5.3E-10 71.5 4.3 34 242-275 2-35 (175)
272 cd00267 ABC_ATPase ABC (ATP-bi 97.7 0.00011 2.5E-09 66.3 8.4 31 245-275 26-56 (157)
273 COG4525 TauB ABC-type taurine 97.7 4.3E-05 9.3E-10 70.4 5.4 90 242-331 29-122 (259)
274 PRK10365 transcriptional regul 97.7 0.00026 5.6E-09 75.0 12.3 84 212-307 141-245 (441)
275 TIGR01188 drrA daunorubicin re 97.7 3.2E-05 6.9E-10 78.0 5.0 33 246-278 21-53 (302)
276 KOG0478 DNA replication licens 97.7 0.00025 5.5E-09 76.0 11.8 160 211-410 430-626 (804)
277 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00024 5.2E-09 67.8 10.6 22 245-266 30-51 (213)
278 cd03283 ABC_MutS-like MutS-lik 97.7 0.00017 3.8E-09 68.0 9.4 63 244-306 25-116 (199)
279 COG1125 OpuBA ABC-type proline 97.7 4.2E-05 9E-10 73.2 5.0 159 235-398 16-221 (309)
280 PF06309 Torsin: Torsin; Inte 97.7 6.5E-05 1.4E-09 64.8 5.6 51 210-268 25-77 (127)
281 TIGR01618 phage_P_loop phage n 97.7 8E-05 1.7E-09 71.1 6.4 22 245-266 13-34 (220)
282 COG4133 CcmA ABC-type transpor 97.7 0.0001 2.2E-09 67.6 6.6 46 234-279 16-63 (209)
283 PRK06067 flagellar accessory p 97.7 0.00039 8.4E-09 67.3 11.1 39 240-278 21-62 (234)
284 PRK12723 flagellar biosynthesi 97.6 0.00061 1.3E-08 70.7 12.9 36 244-279 174-216 (388)
285 KOG2170 ATPase of the AAA+ sup 97.6 0.00014 3.1E-09 71.1 7.6 89 211-307 83-190 (344)
286 PRK13536 nodulation factor exp 97.6 4.3E-05 9.3E-10 78.2 4.1 34 246-279 69-102 (340)
287 PF00493 MCM: MCM2/3/5 family 97.6 2.3E-05 5E-10 79.9 1.9 128 246-411 59-222 (331)
288 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00021 4.5E-09 66.2 7.9 62 245-306 26-100 (177)
289 COG5245 DYN1 Dynein, heavy cha 97.6 0.0015 3.3E-08 75.3 15.5 139 242-411 1492-1659(3164)
290 KOG1968 Replication factor C, 97.6 0.00052 1.1E-08 77.5 12.1 167 204-412 314-504 (871)
291 PTZ00202 tuzin; Provisional 97.6 0.0057 1.2E-07 63.7 18.4 78 205-294 257-334 (550)
292 PRK09361 radB DNA repair and r 97.6 0.00039 8.5E-09 66.8 9.6 39 240-278 19-60 (225)
293 cd03216 ABC_Carb_Monos_I This 97.6 0.0003 6.4E-09 64.2 8.3 31 245-275 27-57 (163)
294 cd01394 radB RadB. The archaea 97.5 0.00085 1.8E-08 64.1 11.5 39 240-278 15-56 (218)
295 PRK09376 rho transcription ter 97.5 0.00069 1.5E-08 69.6 11.1 29 242-270 165-195 (416)
296 cd00464 SK Shikimate kinase (S 97.5 8.6E-05 1.9E-09 66.5 4.1 31 246-276 1-31 (154)
297 KOG2228 Origin recognition com 97.5 0.001 2.3E-08 66.2 11.7 154 211-411 25-220 (408)
298 PRK13947 shikimate kinase; Pro 97.5 8.7E-05 1.9E-09 68.0 4.0 31 246-276 3-33 (171)
299 PRK03839 putative kinase; Prov 97.5 8.2E-05 1.8E-09 68.9 3.8 30 247-276 3-32 (180)
300 PRK13949 shikimate kinase; Pro 97.5 8.1E-05 1.8E-09 68.4 3.6 31 246-276 3-33 (169)
301 TIGR02858 spore_III_AA stage I 97.5 0.00056 1.2E-08 67.6 9.7 28 245-272 112-139 (270)
302 COG1373 Predicted ATPase (AAA+ 97.5 0.0014 2.9E-08 68.7 13.1 62 246-307 39-106 (398)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00036 7.8E-09 62.3 7.6 63 245-307 27-100 (144)
304 PRK00625 shikimate kinase; Pro 97.5 9.3E-05 2E-09 68.2 3.9 31 246-276 2-32 (173)
305 KOG0480 DNA replication licens 97.5 0.00085 1.8E-08 71.6 11.3 162 209-412 344-544 (764)
306 COG1119 ModF ABC-type molybden 97.5 0.00051 1.1E-08 65.7 8.7 51 243-293 56-111 (257)
307 cd01124 KaiC KaiC is a circadi 97.5 0.00083 1.8E-08 62.2 10.2 31 247-277 2-35 (187)
308 COG1485 Predicted ATPase [Gene 97.5 0.0002 4.3E-09 71.8 6.0 95 241-374 62-170 (367)
309 PF13671 AAA_33: AAA domain; P 97.5 8.3E-05 1.8E-09 65.8 3.0 24 247-270 2-25 (143)
310 cd03246 ABCC_Protease_Secretio 97.4 0.00069 1.5E-08 62.4 9.1 30 246-275 30-59 (173)
311 TIGR03499 FlhF flagellar biosy 97.4 0.00062 1.3E-08 67.9 9.2 35 245-279 195-234 (282)
312 cd03265 ABC_DrrA DrrA is the A 97.4 0.00016 3.4E-09 69.3 4.8 33 246-278 28-60 (220)
313 PF14516 AAA_35: AAA-like doma 97.4 0.0033 7.2E-08 64.2 14.7 36 245-280 32-70 (331)
314 COG0703 AroK Shikimate kinase 97.4 0.00011 2.3E-09 67.1 3.2 32 245-276 3-34 (172)
315 TIGR03522 GldA_ABC_ATP gliding 97.4 0.00016 3.5E-09 72.8 4.9 34 246-279 30-63 (301)
316 COG2204 AtoC Response regulato 97.4 0.0011 2.4E-08 69.6 11.2 89 208-307 139-247 (464)
317 cd01393 recA_like RecA is a b 97.4 0.00085 1.8E-08 64.3 9.7 50 240-289 15-73 (226)
318 cd00544 CobU Adenosylcobinamid 97.4 0.0013 2.8E-08 60.4 10.3 62 247-308 2-86 (169)
319 cd03228 ABCC_MRP_Like The MRP 97.4 0.00073 1.6E-08 62.0 8.8 31 245-275 29-59 (171)
320 TIGR01288 nodI ATP-binding ABC 97.4 0.00015 3.3E-09 73.1 4.4 33 246-278 32-64 (303)
321 cd03263 ABC_subfamily_A The AB 97.4 0.00017 3.8E-09 68.9 4.5 32 246-277 30-61 (220)
322 PRK08533 flagellar accessory p 97.4 0.0015 3.2E-08 63.2 11.0 37 240-276 20-59 (230)
323 cd03269 ABC_putative_ATPase Th 97.4 0.00016 3.6E-09 68.6 4.3 33 246-278 28-60 (210)
324 cd03258 ABC_MetN_methionine_tr 97.4 0.00015 3.2E-09 70.1 4.0 34 245-278 32-65 (233)
325 KOG3347 Predicted nucleotide k 97.4 0.00014 3.1E-09 64.0 3.4 32 244-275 7-38 (176)
326 COG4555 NatA ABC-type Na+ tran 97.4 0.00033 7.2E-09 65.0 6.0 44 340-384 158-201 (245)
327 COG1126 GlnQ ABC-type polar am 97.4 0.00013 2.7E-09 68.5 3.2 97 235-331 17-126 (240)
328 PRK13948 shikimate kinase; Pro 97.3 0.0002 4.2E-09 66.6 4.2 35 242-276 8-42 (182)
329 KOG1051 Chaperone HSP104 and r 97.3 0.0022 4.8E-08 72.1 13.1 148 209-406 185-359 (898)
330 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00023 4.9E-09 69.0 4.7 32 247-278 33-64 (254)
331 TIGR02688 conserved hypothetic 97.3 0.0015 3.2E-08 67.8 10.8 61 245-306 210-271 (449)
332 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00017 3.7E-09 66.8 3.7 28 247-274 2-29 (183)
333 cd03243 ABC_MutS_homologs The 97.3 0.0014 3.1E-08 61.9 9.9 22 245-266 30-51 (202)
334 PRK12608 transcription termina 97.3 0.0024 5.2E-08 65.4 12.1 24 247-270 136-159 (380)
335 TIGR02012 tigrfam_recA protein 97.3 0.0015 3.3E-08 65.9 10.5 38 240-277 51-91 (321)
336 PRK06217 hypothetical protein; 97.3 0.0002 4.3E-09 66.6 3.9 31 246-276 3-33 (183)
337 PRK14531 adenylate kinase; Pro 97.3 0.00021 4.6E-09 66.4 4.0 30 245-274 3-32 (183)
338 PRK05800 cobU adenosylcobinami 97.3 0.00046 9.9E-09 63.5 6.1 35 246-280 3-37 (170)
339 PRK14532 adenylate kinase; Pro 97.3 0.00019 4.1E-09 66.9 3.6 29 246-274 2-30 (188)
340 PRK08154 anaerobic benzoate ca 97.3 0.00039 8.5E-09 70.3 6.1 58 214-276 108-165 (309)
341 TIGR01313 therm_gnt_kin carboh 97.3 0.00019 4.1E-09 65.2 3.5 27 247-273 1-27 (163)
342 cd02021 GntK Gluconate kinase 97.3 0.0002 4.4E-09 64.0 3.6 27 247-273 2-28 (150)
343 cd01128 rho_factor Transcripti 97.3 0.00083 1.8E-08 65.6 7.9 58 246-306 18-79 (249)
344 cd02020 CMPK Cytidine monophos 97.3 0.00023 5E-09 63.1 3.7 30 247-276 2-31 (147)
345 PRK05973 replicative DNA helic 97.3 0.0029 6.3E-08 61.2 11.6 39 240-278 60-101 (237)
346 PRK05057 aroK shikimate kinase 97.3 0.00024 5.2E-09 65.5 3.9 34 244-277 4-37 (172)
347 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.0013 2.7E-08 62.2 8.9 21 245-265 29-49 (200)
348 PF06431 Polyoma_lg_T_C: Polyo 97.3 0.001 2.2E-08 66.9 8.5 138 218-395 137-284 (417)
349 COG1102 Cmk Cytidylate kinase 97.3 0.00023 5E-09 63.6 3.5 28 247-274 3-30 (179)
350 cd03247 ABCC_cytochrome_bd The 97.3 0.0011 2.4E-08 61.3 8.3 33 245-277 29-61 (178)
351 TIGR00960 3a0501s02 Type II (G 97.3 0.00039 8.5E-09 66.3 5.5 33 246-278 31-63 (216)
352 COG1618 Predicted nucleotide k 97.3 0.0019 4.1E-08 57.9 9.2 24 246-269 7-30 (179)
353 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0014 3.1E-08 62.9 9.2 62 245-306 32-121 (222)
354 PRK13765 ATP-dependent proteas 97.3 0.00055 1.2E-08 75.3 7.0 53 204-271 25-77 (637)
355 PF13191 AAA_16: AAA ATPase do 97.2 0.00022 4.7E-09 65.8 3.4 37 244-280 24-63 (185)
356 PRK04841 transcriptional regul 97.2 0.013 2.9E-07 67.8 18.8 33 245-278 33-65 (903)
357 TIGR02673 FtsE cell division A 97.2 0.00024 5.2E-09 67.6 3.6 33 246-278 30-62 (214)
358 PRK08233 hypothetical protein; 97.2 0.0029 6.3E-08 58.2 10.7 24 246-269 5-28 (182)
359 PRK14530 adenylate kinase; Pro 97.2 0.0003 6.5E-09 67.2 4.1 29 246-274 5-33 (215)
360 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6E-09 65.9 3.6 28 247-274 2-29 (194)
361 COG1241 MCM2 Predicted ATPase 97.2 0.00062 1.3E-08 74.7 6.7 93 210-307 286-395 (682)
362 PRK13946 shikimate kinase; Pro 97.2 0.00029 6.3E-09 65.6 3.6 33 244-276 10-42 (184)
363 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0017 3.7E-08 63.9 9.2 39 240-278 32-73 (259)
364 cd03227 ABC_Class2 ABC-type Cl 97.2 0.0015 3.2E-08 59.5 8.2 24 245-268 22-45 (162)
365 PRK05703 flhF flagellar biosyn 97.2 0.0048 1E-07 65.0 13.0 35 245-279 222-261 (424)
366 TIGR02314 ABC_MetN D-methionin 97.2 0.0004 8.6E-09 71.2 4.8 33 246-278 33-65 (343)
367 TIGR03265 PhnT2 putative 2-ami 97.2 0.00024 5.2E-09 73.1 3.2 33 246-278 32-64 (353)
368 cd03292 ABC_FtsE_transporter F 97.2 0.00046 9.9E-09 65.7 4.9 33 246-278 29-61 (214)
369 TIGR01186 proV glycine betaine 97.2 0.00024 5.2E-09 73.3 3.1 32 246-277 21-52 (363)
370 PF06745 KaiC: KaiC; InterPro 97.2 0.0023 5.1E-08 61.4 9.9 51 240-292 15-69 (226)
371 PRK11650 ugpC glycerol-3-phosp 97.2 0.00024 5.2E-09 73.2 3.1 34 246-279 32-65 (356)
372 cd03214 ABC_Iron-Siderophores_ 97.2 0.0019 4E-08 59.9 8.8 30 246-275 27-56 (180)
373 COG3604 FhlA Transcriptional r 97.2 0.0024 5.3E-08 66.7 10.3 91 206-307 219-329 (550)
374 PRK06762 hypothetical protein; 97.2 0.00044 9.5E-09 63.0 4.4 32 245-276 3-34 (166)
375 PRK11889 flhF flagellar biosyn 97.2 0.0056 1.2E-07 63.2 12.6 61 216-280 217-280 (436)
376 PF13245 AAA_19: Part of AAA d 97.1 0.00059 1.3E-08 53.9 4.4 32 247-278 13-51 (76)
377 PRK03731 aroL shikimate kinase 97.1 0.00042 9.1E-09 63.5 4.2 31 246-276 4-34 (171)
378 cd03266 ABC_NatA_sodium_export 97.1 0.00042 9.1E-09 66.1 4.3 32 246-277 33-64 (218)
379 TIGR00767 rho transcription te 97.1 0.0016 3.4E-08 67.3 8.7 29 242-270 164-194 (415)
380 PF04665 Pox_A32: Poxvirus A32 97.1 0.0083 1.8E-07 58.0 13.1 46 364-412 127-172 (241)
381 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 8.9E-09 64.3 4.0 29 246-274 5-33 (188)
382 PF05272 VirE: Virulence-assoc 97.1 0.001 2.3E-08 62.6 6.7 60 240-307 48-107 (198)
383 cd03284 ABC_MutS1 MutS1 homolo 97.1 0.0034 7.3E-08 60.1 10.4 22 245-266 31-52 (216)
384 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.00034 7.3E-09 68.0 3.5 33 245-277 28-60 (242)
385 cd00983 recA RecA is a bacter 97.1 0.0029 6.2E-08 64.0 10.2 38 240-277 51-91 (325)
386 PRK13644 cbiO cobalt transport 97.1 0.00031 6.6E-09 69.8 3.2 33 246-278 30-62 (274)
387 COG1136 SalX ABC-type antimicr 97.1 0.0016 3.4E-08 62.3 7.8 35 241-275 26-62 (226)
388 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0029 6.3E-08 57.8 9.4 27 245-271 28-54 (166)
389 PRK09493 glnQ glutamine ABC tr 97.1 0.00052 1.1E-08 66.6 4.7 33 246-278 29-61 (240)
390 PRK06547 hypothetical protein; 97.1 0.00073 1.6E-08 62.3 5.3 32 244-275 15-46 (172)
391 PRK02496 adk adenylate kinase; 97.1 0.00039 8.5E-09 64.6 3.6 28 247-274 4-31 (184)
392 COG1122 CbiO ABC-type cobalt t 97.1 0.00071 1.5E-08 65.4 5.4 35 245-279 31-65 (235)
393 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0027 5.8E-08 60.2 9.3 22 245-266 30-51 (204)
394 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00076 1.7E-08 64.0 5.5 32 246-277 29-60 (211)
395 COG4650 RtcR Sigma54-dependent 97.1 0.0013 2.8E-08 64.2 6.9 65 243-307 207-294 (531)
396 cd02019 NK Nucleoside/nucleoti 97.1 0.0008 1.7E-08 52.0 4.6 29 247-275 2-31 (69)
397 PRK14528 adenylate kinase; Pro 97.1 0.00046 1E-08 64.4 3.9 29 246-274 3-31 (186)
398 smart00534 MUTSac ATPase domai 97.1 0.0021 4.4E-08 60.0 8.2 60 247-306 2-89 (185)
399 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0018 3.8E-08 62.5 8.1 51 240-290 15-74 (235)
400 PF00437 T2SE: Type II/IV secr 97.1 0.00097 2.1E-08 65.9 6.3 90 205-305 99-207 (270)
401 PRK13648 cbiO cobalt transport 97.1 0.00079 1.7E-08 66.6 5.6 33 246-278 37-69 (269)
402 PRK13643 cbiO cobalt transport 97.1 0.00053 1.2E-08 68.6 4.5 34 246-279 34-67 (288)
403 PF13604 AAA_30: AAA domain; P 97.1 0.0032 7E-08 59.2 9.5 35 245-279 19-56 (196)
404 PF13479 AAA_24: AAA domain 97.1 0.0024 5.1E-08 61.0 8.6 59 246-309 5-82 (213)
405 PRK04296 thymidine kinase; Pro 97.1 0.0069 1.5E-07 56.7 11.6 30 246-275 4-36 (190)
406 PRK11823 DNA repair protein Ra 97.1 0.0027 5.9E-08 67.4 9.8 39 240-278 76-117 (446)
407 cd03218 ABC_YhbG The ABC trans 97.1 0.00038 8.2E-09 67.2 3.1 32 246-277 28-59 (232)
408 COG4586 ABC-type uncharacteriz 97.0 0.0026 5.6E-08 61.8 8.5 45 236-280 40-86 (325)
409 cd00227 CPT Chloramphenicol (C 97.0 0.00046 9.9E-09 63.7 3.3 31 245-275 3-33 (175)
410 PRK13647 cbiO cobalt transport 97.0 0.00083 1.8E-08 66.7 5.4 34 246-279 33-66 (274)
411 cd01121 Sms Sms (bacterial rad 97.0 0.0025 5.4E-08 66.0 8.9 38 240-277 78-118 (372)
412 PRK13636 cbiO cobalt transport 97.0 0.00041 9E-09 69.2 3.1 34 246-279 34-67 (283)
413 PF07693 KAP_NTPase: KAP famil 97.0 0.0068 1.5E-07 61.4 12.1 30 242-271 18-47 (325)
414 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0013 2.8E-08 57.7 5.8 28 244-271 22-49 (133)
415 PTZ00088 adenylate kinase 1; P 97.0 0.00055 1.2E-08 66.1 3.8 29 246-274 8-36 (229)
416 cd03238 ABC_UvrA The excision 97.0 0.0024 5.3E-08 59.0 7.9 21 246-266 23-43 (176)
417 PRK11000 maltose/maltodextrin 97.0 0.00029 6.2E-09 73.0 1.8 32 246-277 31-62 (369)
418 COG3283 TyrR Transcriptional r 97.0 0.0047 1E-07 62.0 10.1 98 198-306 192-304 (511)
419 TIGR03258 PhnT 2-aminoethylpho 97.0 0.00042 9.2E-09 71.5 2.9 33 246-278 33-67 (362)
420 PRK11432 fbpC ferric transport 97.0 0.00037 8E-09 71.7 2.4 33 246-278 34-66 (351)
421 PLN02200 adenylate kinase fami 97.0 0.00073 1.6E-08 65.5 4.3 28 245-272 44-71 (234)
422 PRK06581 DNA polymerase III su 97.0 0.02 4.4E-07 55.0 13.7 124 245-411 16-162 (263)
423 PLN02199 shikimate kinase 97.0 0.0014 3E-08 65.0 6.2 32 245-276 103-134 (303)
424 cd03264 ABC_drug_resistance_li 97.0 0.001 2.2E-08 63.2 5.1 33 246-278 27-59 (211)
425 PRK09536 btuD corrinoid ABC tr 97.0 0.00065 1.4E-08 71.0 4.1 33 246-278 31-63 (402)
426 COG1855 ATPase (PilT family) [ 97.0 0.0008 1.7E-08 69.2 4.5 57 197-271 232-290 (604)
427 COG1936 Predicted nucleotide k 97.0 0.00049 1.1E-08 62.4 2.7 28 247-275 3-30 (180)
428 TIGR01351 adk adenylate kinase 97.0 0.00064 1.4E-08 64.7 3.7 28 247-274 2-29 (210)
429 TIGR03415 ABC_choXWV_ATP choli 97.0 0.00039 8.5E-09 72.1 2.4 38 241-278 45-84 (382)
430 PRK13651 cobalt transporter AT 97.0 0.00047 1E-08 69.6 2.8 32 246-277 35-66 (305)
431 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0079 1.7E-07 58.3 11.3 49 240-290 17-68 (237)
432 cd03286 ABC_MSH6_euk MutS6 hom 97.0 0.0051 1.1E-07 58.9 9.8 63 244-306 30-120 (218)
433 COG0396 sufC Cysteine desulfur 97.0 0.0021 4.5E-08 60.9 6.9 36 238-273 22-59 (251)
434 COG0563 Adk Adenylate kinase a 97.0 0.00074 1.6E-08 62.5 3.8 26 246-271 2-27 (178)
435 PRK14529 adenylate kinase; Pro 97.0 0.0012 2.6E-08 63.3 5.4 27 247-273 3-29 (223)
436 PRK13652 cbiO cobalt transport 96.9 0.00095 2.1E-08 66.4 4.9 33 246-278 32-64 (277)
437 PRK00279 adk adenylate kinase; 96.9 0.00071 1.5E-08 64.6 3.8 28 247-274 3-30 (215)
438 PRK11231 fecE iron-dicitrate t 96.9 0.0018 3.8E-08 63.5 6.6 32 246-277 30-61 (255)
439 PRK10078 ribose 1,5-bisphospho 96.9 0.00064 1.4E-08 63.4 3.2 29 246-274 4-32 (186)
440 PF00448 SRP54: SRP54-type pro 96.9 0.0046 9.9E-08 58.2 9.0 47 244-290 1-52 (196)
441 PRK09270 nucleoside triphospha 96.9 0.03 6.4E-07 54.0 14.8 27 245-271 34-60 (229)
442 PRK11153 metN DL-methionine tr 96.9 0.00062 1.4E-08 69.8 3.3 33 246-278 33-65 (343)
443 PRK09452 potA putrescine/sperm 96.9 0.00052 1.1E-08 71.2 2.7 33 246-278 42-74 (375)
444 PF13086 AAA_11: AAA domain; P 96.9 0.00063 1.4E-08 64.8 3.1 22 247-268 20-41 (236)
445 PRK11607 potG putrescine trans 96.9 0.00056 1.2E-08 71.0 2.9 33 246-278 47-79 (377)
446 PRK06696 uridine kinase; Valid 96.9 0.0032 7E-08 60.5 7.9 42 245-286 23-67 (223)
447 PF13238 AAA_18: AAA domain; P 96.9 0.00066 1.4E-08 58.5 2.8 22 247-268 1-22 (129)
448 PRK11174 cysteine/glutathione 96.9 0.0056 1.2E-07 67.5 10.8 56 243-299 375-434 (588)
449 PF00406 ADK: Adenylate kinase 96.9 0.00075 1.6E-08 60.6 3.3 26 249-274 1-26 (151)
450 PRK10908 cell division protein 96.9 0.0014 3.1E-08 62.7 5.4 33 246-278 30-62 (222)
451 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0021 4.6E-08 65.0 6.7 65 209-280 59-125 (358)
452 PRK14527 adenylate kinase; Pro 96.9 0.00079 1.7E-08 63.0 3.4 30 245-274 7-36 (191)
453 PRK13650 cbiO cobalt transport 96.9 0.0015 3.2E-08 65.1 5.4 34 245-278 34-67 (279)
454 PRK12727 flagellar biosynthesi 96.9 0.0079 1.7E-07 64.3 11.0 25 244-268 350-374 (559)
455 PRK04328 hypothetical protein; 96.8 0.011 2.4E-07 57.9 11.3 49 240-290 19-70 (249)
456 COG2874 FlaH Predicted ATPases 96.8 0.011 2.3E-07 55.6 10.5 27 240-266 24-50 (235)
457 PF00488 MutS_V: MutS domain V 96.8 0.019 4.2E-07 55.6 12.9 62 245-306 44-133 (235)
458 TIGR02655 circ_KaiC circadian 96.8 0.0085 1.8E-07 64.4 11.4 51 240-292 17-71 (484)
459 COG3854 SpoIIIAA ncharacterize 96.8 0.003 6.4E-08 59.9 6.8 24 246-269 139-162 (308)
460 PRK04182 cytidylate kinase; Pr 96.8 0.001 2.2E-08 61.2 3.7 28 247-274 3-30 (180)
461 COG2274 SunT ABC-type bacterio 96.8 0.0042 9E-08 69.4 9.0 41 239-279 492-534 (709)
462 PRK14526 adenylate kinase; Pro 96.8 0.0012 2.5E-08 63.0 4.0 28 247-274 3-30 (211)
463 PRK04040 adenylate kinase; Pro 96.8 0.0011 2.5E-08 61.9 3.8 28 245-272 3-32 (188)
464 PRK01184 hypothetical protein; 96.8 0.0011 2.4E-08 61.5 3.7 28 246-274 3-30 (184)
465 cd02027 APSK Adenosine 5'-phos 96.8 0.0015 3.2E-08 58.7 4.4 30 247-276 2-34 (149)
466 PF13521 AAA_28: AAA domain; P 96.8 0.00099 2.1E-08 60.6 3.2 26 247-273 2-27 (163)
467 TIGR01257 rim_protein retinal- 96.8 0.001 2.3E-08 81.6 4.1 33 247-279 959-991 (2272)
468 PRK13635 cbiO cobalt transport 96.8 0.0017 3.6E-08 64.7 5.0 34 246-279 35-68 (279)
469 COG3842 PotA ABC-type spermidi 96.8 0.00087 1.9E-08 68.2 3.0 70 239-308 24-102 (352)
470 TIGR01613 primase_Cterm phage/ 96.8 0.0074 1.6E-07 60.9 9.7 63 241-306 73-139 (304)
471 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0013 2.8E-08 59.9 3.8 28 247-274 3-30 (171)
472 PRK10646 ADP-binding protein; 96.7 0.0097 2.1E-07 53.5 9.2 25 246-270 30-54 (153)
473 cd01130 VirB11-like_ATPase Typ 96.7 0.0018 3.9E-08 60.4 4.7 28 244-271 25-52 (186)
474 KOG2383 Predicted ATPase [Gene 96.7 0.0043 9.3E-08 63.2 7.6 26 243-268 113-138 (467)
475 PRK10070 glycine betaine trans 96.7 0.0015 3.2E-08 68.4 4.4 32 246-277 56-87 (400)
476 COG4619 ABC-type uncharacteriz 96.7 0.0025 5.5E-08 57.6 5.2 66 239-304 22-93 (223)
477 PLN03211 ABC transporter G-25; 96.7 0.00073 1.6E-08 75.2 2.2 26 246-271 96-121 (659)
478 COG4152 ABC-type uncharacteriz 96.7 0.00061 1.3E-08 65.0 1.3 79 243-321 27-110 (300)
479 PF02367 UPF0079: Uncharacteri 96.7 0.0029 6.2E-08 54.8 5.3 63 244-306 15-99 (123)
480 TIGR00235 udk uridine kinase. 96.7 0.0018 3.9E-08 61.4 4.5 24 247-270 9-32 (207)
481 PHA00350 putative assembly pro 96.7 0.0057 1.2E-07 63.4 8.4 125 247-391 4-159 (399)
482 TIGR01257 rim_protein retinal- 96.7 0.0015 3.2E-08 80.3 4.6 33 247-279 1968-2000(2272)
483 COG3839 MalK ABC-type sugar tr 96.7 0.001 2.2E-08 67.4 2.7 86 240-325 23-117 (338)
484 PRK12724 flagellar biosynthesi 96.7 0.026 5.6E-07 58.9 12.9 36 245-280 224-263 (432)
485 PF13555 AAA_29: P-loop contai 96.7 0.0019 4.2E-08 48.6 3.4 24 246-269 25-48 (62)
486 PF01745 IPT: Isopentenyl tran 96.7 0.0017 3.8E-08 60.9 3.9 34 246-279 3-36 (233)
487 COG1124 DppF ABC-type dipeptid 96.6 0.00041 8.8E-09 66.2 -0.4 43 237-279 24-68 (252)
488 PHA02530 pseT polynucleotide k 96.6 0.0016 3.4E-08 65.4 3.8 28 246-273 4-32 (300)
489 smart00072 GuKc Guanylate kina 96.6 0.014 3.1E-07 54.2 9.9 24 245-268 3-26 (184)
490 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0021 4.4E-08 62.9 4.4 31 247-277 2-35 (249)
491 PRK09354 recA recombinase A; P 96.6 0.011 2.5E-07 60.2 9.8 39 240-278 56-97 (349)
492 TIGR00955 3a01204 The Eye Pigm 96.6 0.0034 7.4E-08 69.6 6.6 25 246-270 53-77 (617)
493 COG0467 RAD55 RecA-superfamily 96.6 0.0048 1E-07 60.7 6.9 50 240-291 19-71 (260)
494 TIGR02782 TrbB_P P-type conjug 96.6 0.0028 6.2E-08 63.7 5.3 26 244-269 132-157 (299)
495 PRK09825 idnK D-gluconate kina 96.6 0.0032 7E-08 58.2 5.2 26 246-271 5-30 (176)
496 TIGR02322 phosphon_PhnN phosph 96.6 0.0018 3.8E-08 59.8 3.4 25 246-270 3-27 (179)
497 PRK00771 signal recognition pa 96.6 0.007 1.5E-07 63.8 8.2 62 218-280 70-134 (437)
498 PLN02674 adenylate kinase 96.6 0.0021 4.5E-08 62.5 4.0 31 244-274 31-61 (244)
499 KOG3354 Gluconate kinase [Carb 96.6 0.003 6.4E-08 56.1 4.5 47 242-290 10-56 (191)
500 PRK05541 adenylylsulfate kinas 96.6 0.0028 6E-08 58.4 4.6 26 245-270 8-33 (176)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-99 Score=754.56 Aligned_cols=443 Identities=51% Similarity=0.822 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhHHHHhcccCCceEEEEeeecCCcCCccHHHHHHHHHhcccccccc
Q 041423 8 EMLAAMGSTIASFMFVWAIIRQYCPYEVRRHFEKYTHRIMGFFYPYIKISIHEFTGDRLKRSEAYAAVEAYLSVNSSKSA 87 (500)
Q Consensus 8 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~i~E~~~~~~~~ne~Y~~~~~yLs~~~~~~~ 87 (500)
++|+.+||++|++||+|+|+++++|..++.|+.+++++|++++++|.++.+.|+.| +.+|++|.+++.||+++.++.+
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g--~~~n~~~~aie~yl~~k~~~~~ 79 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDG--VFRNQLYVAIEVYLSSKSSAIA 79 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhcc--chHHHHHHHHHHhhhccchhhh
Confidence 57899999999999999999999999999999999999999999999999999976 8899999999999999998899
Q ss_pred CceEEeecCCCCCeEEeecCCCceecccCCeeEEEEEeeeccccCccccCCCCcceEEEEEEeccchhHHHHHhHHHHHH
Q 041423 88 KRLKAEMGKDSSNLVLSMDEYERVTDEFRGVKVWWVSSKVVSTTRGMSYYPEQEKRYYRLTFHKRYREIITESYLQHVVK 167 (500)
Q Consensus 88 ~~l~v~~~~~s~~~~~~~~~~~~v~d~f~g~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 167 (500)
.+++.....+++++++.++++++|.|+|+|+++||.+....+..+.+. ....+.|+|+|+|+++||++|+++||+|+..
T Consensus 80 ~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~-~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~ 158 (457)
T KOG0743|consen 80 KRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV-EREREKRYFELTFHKKPRELVTLSYLPYVVS 158 (457)
T ss_pred hhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc-ccCCcceEEEEEecCccHHHhHHhHHHHHHH
Confidence 999999999999999999999999999999999999998876655332 1226889999999999999999999999999
Q ss_pred HhHHHHHHHhhcccccCCCCCCCCCccccCceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccce
Q 041423 168 EGKEIRVRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGY 247 (500)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~ 247 (500)
+++.|..+++++++|+++++..|..+.+..|.+++|.||++|++|+|+++.|++|++|+..|.++++||+++|++|+|||
T Consensus 159 ~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGY 238 (457)
T KOG0743|consen 159 KAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGY 238 (457)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccc
Confidence 99999999999999999998888877789999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHh
Q 041423 248 LLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKE 327 (500)
Q Consensus 248 LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~ 327 (500)
||||||||||||++.|||++|+++||.++++++.++++|++|+..++++||||||||||.+++.+++.++....
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~------ 312 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENF------ 312 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999998877765422110
Q ss_pred hhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 328 KLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
....+.+|+|||||++||+||+||++|||||||||+++|||||+||||||+||+|++|++++++.|++
T Consensus 313 ------------~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 313 ------------EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred ------------cCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 12357799999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcccc-chhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041423 408 NYLNVET-HTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEE 473 (500)
Q Consensus 408 ~~l~~~~-~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 473 (500)
+||+... |.++++|+++.++..+|||||++.+|. ..++++.|++.|+++++..+.+..+...+.
T Consensus 381 nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~--~~~dad~~lk~Lv~~l~~~~~~~~~~~~~~ 445 (457)
T KOG0743|consen 381 NYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMK--NKNDADVALKGLVEALESKKEKRNKDDKEL 445 (457)
T ss_pred HhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhhhhccchhhh
Confidence 9999975 999999999999999999999999996 333999999999999999887766554444
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-41 Score=326.67 Aligned_cols=245 Identities=24% Similarity=0.305 Sum_probs=208.4
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV-- 280 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~-- 280 (500)
-.+-.+|++|.|.+++.++|.+.+..++.+++.|.++|+.+|+|+|||||||||||.||+|+|++.+..|+.+.-+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred ----CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 ----KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ----~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
+...-++.+|.-+ ..||||||||||++. +.|... ...+..+.++|+-+|||.
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg---~kR~d~-------------------~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIG---AKRFDS-------------------GTSGDREVQRTMLELLNQ 281 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhh---cccccC-------------------CCCchHHHHHHHHHHHHh
Confidence 3444557787665 479999999999963 333211 111456678999999999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
|||+.. .+++=|||+||+++.|||||+||||||++|+||+|+.+.|.+|++.+...-. -..++....
T Consensus 282 lDGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-----------l~~dvd~e~ 348 (406)
T COG1222 282 LDGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-----------LADDVDLEL 348 (406)
T ss_pred ccCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-----------CccCcCHHH
Confidence 999965 4779999999999999999999999999999999999999999998864311 122566677
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESR 482 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (500)
|+..+.++|+++....|.+|-+-||+..+.....++..+++.+.-...
T Consensus 349 la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 349 LARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 777788888888889999999999999999999999999998885543
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=308.15 Aligned_cols=229 Identities=28% Similarity=0.389 Sum_probs=181.5
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc-----
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV----- 280 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~----- 280 (500)
..+|++|-|.++.|+++ +.|..|++.+..|.++|...|+|+||.||||||||.||+|+|++.+.||+..+-+..
T Consensus 300 nv~F~dVkG~DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 34799999999999999 778899999999999999999999999999999999999999999999999877765
Q ss_pred -CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 281 -KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 281 -~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
....+++.+|..+. .||||||||||++ .|.|... .....+.++++||..|||
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDav---G~kR~~~----------------------~~~y~kqTlNQLLvEmDG 433 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAV---GGKRNPS----------------------DQHYAKQTLNQLLVEMDG 433 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhh---cccCCcc----------------------HHHHHHHHHHHHHHHhcC
Confidence 35678999998875 6999999999994 3333211 222678999999999999
Q ss_pred hhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHHH
Q 041423 358 LWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADVA 436 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~ 436 (500)
+... +++|||++||.|+.||+||.||||||++|.+|.||...|.+|++.|+....+.-..+..-+++ ..||+.||++
T Consensus 434 F~qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa 511 (752)
T KOG0734|consen 434 FKQN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA 511 (752)
T ss_pred cCcC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH
Confidence 9654 679999999999999999999999999999999999999999999997654432222233333 3355555554
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEE 474 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 474 (500)
+ ...++.+.+.....+....++++.+
T Consensus 512 N------------lVNqAAlkAa~dga~~VtM~~LE~a 537 (752)
T KOG0734|consen 512 N------------LVNQAALKAAVDGAEMVTMKHLEFA 537 (752)
T ss_pred H------------HHHHHHHHHHhcCcccccHHHHhhh
Confidence 4 4445555555554444444444333
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=315.57 Aligned_cols=245 Identities=25% Similarity=0.350 Sum_probs=200.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
-+..+|++++|.+++|++|-+.+...++.++.|.+.|+.+++|+|||||||||||++|+|+|++.+.+++.+....+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999976665
Q ss_pred ---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+++..++.+|..+. .||||||||||.+. +.|.. ...+.+.+.++.||+.|
T Consensus 508 ~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~---~~R~g----------------------~~~~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 508 YVGESERAIREVFRKARQVAPCIIFFDEIDALA---GSRGG----------------------SSSGVTDRVLSQLLTEM 562 (693)
T ss_pred hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHh---hccCC----------------------CccchHHHHHHHHHHHc
Confidence 56778999998875 58999999999975 33311 13366789999999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+... .+++||++||+|+.||+||+||||||..|++|+|+.+.|.+|++.++..-+..- .++..+|
T Consensus 563 DG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-----------~vdl~~L 629 (693)
T KOG0730|consen 563 DGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-----------DVDLEEL 629 (693)
T ss_pred cccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-----------cccHHHH
Confidence 999653 569999999999999999999999999999999999999999999986543221 3445566
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhhhhhhc
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKE--EAERKQAEEERKQAEESREEQS 486 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 486 (500)
++.+.++|+++....|.++...|+++.-+ +...+..+++++..+.+....+
T Consensus 630 a~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~ 682 (693)
T KOG0730|consen 630 AQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSEL 682 (693)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHH
Confidence 66666666666677777777777776554 2345666666666655555444
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=293.61 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=188.1
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------ 280 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------ 280 (500)
..|+++.|.+....++++.+.. +.+++.|..+|+.++||+|||||||||||+||+|+|++++.|++.|+..++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 3799999999999999887776 999999999999999999999999999999999999999999999987765
Q ss_pred CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 281 KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 281 ~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
+++..++.+|.++. .|||+||||||++. +.|... ...-.++.+++||+.||++
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~---pkRe~a----------------------qreMErRiVaQLlt~mD~l 320 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAIT---PKREEA----------------------QREMERRIVAQLLTSMDEL 320 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccc---cchhhH----------------------HHHHHHHHHHHHHHhhhcc
Confidence 57889999999986 59999999999964 233211 2234578999999999998
Q ss_pred hhcc--CCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 359 WSAC--GGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 359 ~~~~--~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
.... +..++||++||+|+.|||||+|+||||..|.++.|+..+|..|++..+....+. ..++..+|+
T Consensus 321 ~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-----------g~~d~~qlA 389 (802)
T KOG0733|consen 321 SNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-----------GDFDFKQLA 389 (802)
T ss_pred cccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-----------CCcCHHHHH
Confidence 6542 467999999999999999999999999999999999999999998887543322 267778888
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKE 461 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~ 461 (500)
..+.++.++|....|-++...++++
T Consensus 390 ~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 390 KLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred hcCCCccchhHHHHHHHHHHHHHHH
Confidence 8888888888888899998888887
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-34 Score=292.57 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=175.6
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++|.+.++++.++...|..++++++.|+.+|+..|.|+|||||||||||.||+|+||+.+.+|+.+.-..+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999865554
Q ss_pred --CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
+++..++.+|..+. .||||||||||+++..++.. ....+.+.+++||..||
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~-------------------------~s~~s~RvvNqLLtElD 640 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE-------------------------GSSVSSRVVNQLLTELD 640 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC-------------------------CchhHHHHHHHHHHHhc
Confidence 56778899998774 79999999999987544332 34456789999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccc-----hhHHHHHHHhhcCCCC
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETH-----TLFETIQKLMEDTKIT 431 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~-----~l~~~i~~l~~~~~~s 431 (500)
|+... .++.||++||+|+.+|||++||||||..++++.|+.++|..|++........ -.+++|....+-.+||
T Consensus 641 Gl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gft 718 (802)
T KOG0733|consen 641 GLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFT 718 (802)
T ss_pred ccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCc
Confidence 99654 5599999999999999999999999999999999999999999998874222 2334455544455777
Q ss_pred HHHHHHHh
Q 041423 432 PADVAENL 439 (500)
Q Consensus 432 pa~i~~~l 439 (500)
.||++.++
T Consensus 719 GADLaaLv 726 (802)
T KOG0733|consen 719 GADLAALV 726 (802)
T ss_pred hhhHHHHH
Confidence 77776443
No 7
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=260.65 Aligned_cols=239 Identities=24% Similarity=0.344 Sum_probs=203.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+++-+.|.+.+.++|.+-|..+.++++.|..+|++-|+|+|||||||||||.||+|+|.+..+.++.++-+.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 4457888999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred --CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
+...-++.+|..+ ..|+|||+||||++- ..+... ...++.+.++++-+|||.+|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsig----s~r~e~------------------~~ggdsevqrtmlellnqld 279 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIG----SSRVES------------------GSGGDSEVQRTMLELLNQLD 279 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccc----cccccC------------------CCCccHHHHHHHHHHHHhcc
Confidence 2344457777555 479999999999963 222111 11134456789999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
|+... .++-||++||+.+-|||||+||||+|++|+||+|+.++|.+|++.+-..- .+ ..|+....|+
T Consensus 280 gfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm---------nl--~rgi~l~kia 346 (404)
T KOG0728|consen 280 GFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM---------NL--TRGINLRKIA 346 (404)
T ss_pred ccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh---------ch--hcccCHHHHH
Confidence 99764 56889999999999999999999999999999999999999988775321 11 2278889999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
+.+.++|+++....|.++-+.+++..+-...+++.+.++.+.
T Consensus 347 ekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 347 EKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred HhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999999999999999999888999999988876
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=300.62 Aligned_cols=241 Identities=26% Similarity=0.346 Sum_probs=191.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
..+.+|.+|+|.++.|++| +.+..|+++++.|.++|..+|+|+||+||||||||.||+|+|++.+.||+.++-+..
T Consensus 305 ~t~V~FkDVAG~deAK~El-~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEEL-MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHH-HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3457899999999999999 557789999999999999999999999999999999999999999999999988875
Q ss_pred ---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
...+.++.+|..+. .|||+||||||.+...++ .. .......+...++++||..|
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~---G~------------------~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG---GK------------------GTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc---cc------------------ccCCCChHHHHHHHHHHHHh
Confidence 34788999998875 699999999999642221 00 01114556678999999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+.+. .++||+++||+++-||+||+||||||++|.++.|+...|.+|++.++........ .+....|
T Consensus 443 Dgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e----------~~dl~~~ 510 (774)
T KOG0731|consen 443 DGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDE----------DVDLSKL 510 (774)
T ss_pred cCCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcc----------hhhHHHH
Confidence 999764 6799999999999999999999999999999999999999999999875432200 1122234
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
+..+.++++++.+.+|.++.+.+.++.......++.+..++..
T Consensus 511 a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 511 ASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERV 553 (774)
T ss_pred HhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHH
Confidence 4444555555555667777777777777776666666666633
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-33 Score=258.85 Aligned_cols=240 Identities=25% Similarity=0.312 Sum_probs=185.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..++.++.|.+-+|++|.+.+...+...+.|+++|+.+|||+|||||||||||+|++|+|++....++.+.-+..
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 3348999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred --CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
+.+.-++.+|.-+ ..|+||||||||++.-. | -. .......+.++.+-+|||.||
T Consensus 230 lgegprmvrdvfrlakenapsiifideidaiatk---r-fd------------------aqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATK---R-FD------------------AQTGADREVQRILIELLNQMD 287 (408)
T ss_pred hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhh---h-cc------------------ccccccHHHHHHHHHHHHhcc
Confidence 3555667777555 47999999999997521 1 00 011134566789999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
|+.. ..++-|||+||+.+.|||||+||||+|++|+||+|+..+++-++......-...- .+...++.
T Consensus 288 gfdq--~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~-----------~vdle~~v 354 (408)
T KOG0727|consen 288 GFDQ--TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSD-----------EVDLEDLV 354 (408)
T ss_pred CcCc--ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCc-----------ccCHHHHh
Confidence 9965 4568999999999999999999999999999999999998877765543211110 11112221
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAE 479 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 479 (500)
..-...|+++....|.++-+.+++..+--...++.+++.+..-
T Consensus 355 ~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 355 ARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred cCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence 1111234555667788888888888777677778877776653
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=287.55 Aligned_cols=229 Identities=22% Similarity=0.360 Sum_probs=188.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++|.|.+++|.+|++-|..++.+++.|.. |...+.|+|||||||||||.+|+|+|.++...|..+.-..+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMY 745 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMY 745 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHH
Confidence 3448999999999999999999999999998864 77778899999999999999999999999999998865543
Q ss_pred --CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
+++.++|++|..+. .||||||||+|.+++-+|.. +++++...+.+|+||.+||
T Consensus 746 VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s-----------------------GDSGGVMDRVVSQLLAELD 802 (953)
T KOG0736|consen 746 VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRS-----------------------GDSGGVMDRVVSQLLAELD 802 (953)
T ss_pred hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCC-----------------------CCccccHHHHHHHHHHHhh
Confidence 68889999998875 69999999999998766654 2267788899999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHH-HHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ-GFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~-~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
|+.......+.||++||+|+.|||||+||||||+-++++.++.. .+..+++-.-. +..=+.+++..+|
T Consensus 803 gls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr-----------kFkLdedVdL~ei 871 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR-----------KFKLDEDVDLVEI 871 (953)
T ss_pred cccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH-----------HccCCCCcCHHHH
Confidence 99865567899999999999999999999999999999998754 33344332211 1111346777888
Q ss_pred HHHhCC-CCCCCcHHHHHHHHHHHHHHhHHHHHH
Q 041423 436 AENLMP-KSPSDNVEKCLSSLIQALKEGKEEAER 468 (500)
Q Consensus 436 ~~~l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~ 468 (500)
++.+.. ++++|.-..|-+++..|+++.....+.
T Consensus 872 Ak~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~ 905 (953)
T KOG0736|consen 872 AKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIES 905 (953)
T ss_pred HhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 877776 677888888999999999987665544
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-32 Score=261.07 Aligned_cols=241 Identities=25% Similarity=0.344 Sum_probs=187.4
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV-- 280 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~-- 280 (500)
-.+..+|.++.|.+.+.++|.+.+..++.++++|...|+.+|+|++|||+||||||.||+|+||.....|..+--+.+
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999999999999888877655554
Q ss_pred ----CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 ----KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ----~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
..+.-++.+|.-+ ..|+|+||||||++ |..+-.. .+.++.+.++++-+|||.
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAi----GtKRyds------------------~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI----GTKRYDS------------------NSGGEREIQRTMLELLNQ 315 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhh----ccccccC------------------CCccHHHHHHHHHHHHHh
Confidence 2344457777655 47999999999995 3322111 111455678899999999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
+||+.+ .+.+-|||+||.++.|||||+||||+|++|+|+.|+...++.|+..+-..-. +.+ .++..+
T Consensus 316 ldGFds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt--l~~---------dVnle~ 382 (440)
T KOG0726|consen 316 LDGFDS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT--LAE---------DVNLEE 382 (440)
T ss_pred ccCccc--cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc--hhc---------cccHHH
Confidence 999976 4678999999999999999999999999999999999999998766543211 111 222222
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
+...-...|++++...|-++-+-|++..+......+.+.+++..
T Consensus 383 li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 383 LIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKV 426 (440)
T ss_pred HhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHH
Confidence 22111123566777789999999999888887777777766665
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.6e-32 Score=264.67 Aligned_cols=221 Identities=26% Similarity=0.363 Sum_probs=186.6
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc-----
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV----- 280 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~----- 280 (500)
...|++|+|..+.|+-|.+.+..++-.+++|+.+-.||+ |+|++||||||||+||+|+|.+++..|+.|+.+.+
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 357899999999999999999999999999999999996 99999999999999999999999999999988877
Q ss_pred CChHHHHHHHHhhc---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 281 KDNTELRKLLIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 281 ~~~~~l~~l~~~~~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
...+.|.+++.++. .|++|||||||.++..+|.. ..+..+++.-++||..|||
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s------------------------~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS------------------------SEHEASRRVKSELLVQMDG 342 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc------------------------cchhHHHHHHHHHHHHhhc
Confidence 34556666666654 69999999999987544432 1456778899999999999
Q ss_pred hhhccCC-C-eEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 358 LWSACGG-E-RLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 358 ~~~~~~~-~-~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
+...... . ++|+++||.|+.||+||+| ||...|++|+|+.+.|..|++..|..... ...+..++|
T Consensus 343 ~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----------~~~~~~~~l 409 (491)
T KOG0738|consen 343 VQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-----------DDPVNLEDL 409 (491)
T ss_pred cccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-----------CCCccHHHH
Confidence 9765432 2 5677799999999999999 99999999999999999999998864321 125666888
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHH
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKE 464 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 464 (500)
++.+.+++++|+..+|-++-+.++++...
T Consensus 410 ae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 410 AERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999999999999888887654
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=275.89 Aligned_cols=242 Identities=24% Similarity=0.319 Sum_probs=188.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.+..+|++|+|.+.+|++|.+.+..++.+++.|...|+++++|+|||||||||||++++++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred ---CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
.....++.+|..+ .+|+||||||||.++. .+... ...........+..+|+.+
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~---~r~~~-------------------~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KRFDA-------------------QTGADREVQRILLELLNQM 276 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc---ccccc-------------------cCCccHHHHHHHHHHHHHh
Confidence 2334567777554 4799999999999753 11100 0001223456788999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
|++... .+++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++....... ++...++
T Consensus 277 d~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-----------dvd~~~l 343 (398)
T PTZ00454 277 DGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-----------EVDLEDF 343 (398)
T ss_pred hccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-----------ccCHHHH
Confidence 998553 468999999999999999999999999999999999999999998875432111 2333444
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEE 480 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (500)
+..+.++++++....|.++.+.++++.......++.+++++....
T Consensus 344 a~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 344 VSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 444445555555566888888888887766777777777777633
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.2e-32 Score=252.28 Aligned_cols=246 Identities=22% Similarity=0.333 Sum_probs=196.6
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV-- 280 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~-- 280 (500)
-.+..+++++.|.+.+.+++++.+...+.+++.|.++|+.+|+|+|+|||||||||.+|+|.|...+..|..+-...+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 345568999999999999999999999999999999999999999999999999999999999988777655433322
Q ss_pred ---CChHH-HHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 ---KDNTE-LRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ---~~~~~-l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
.+... ++..|.-+ ..|+||||||+|.+ |..+.... ..+..+.++++-+|||.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAI----GtKRfDSe------------------k~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAI----GTKRFDSE------------------KAGDREVQRTMLELLNQ 301 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhh----cccccccc------------------ccccHHHHHHHHHHHHh
Confidence 23333 45566544 46999999999995 33322110 11455678899999999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
+||+.+ .+.+-||++||+.+-|||||+|.||+|++|+||.|+.+.|..|++.+-..-. ....+...+
T Consensus 302 LDGFss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn-----------v~~DvNfeE 368 (424)
T KOG0652|consen 302 LDGFSS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN-----------VSDDVNFEE 368 (424)
T ss_pred hcCCCC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC-----------CCCCCCHHH
Confidence 999966 4568899999999999999999999999999999999999999887753211 122455567
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESRE 483 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 483 (500)
++..+..+.++....+|+++-+.+|++...+...++..+.+.+..++++
T Consensus 369 LaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKk 417 (424)
T KOG0652|consen 369 LARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKK 417 (424)
T ss_pred HhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhh
Confidence 7766666777888889999999999999998888888888877755543
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=4.2e-31 Score=247.15 Aligned_cols=230 Identities=23% Similarity=0.311 Sum_probs=184.3
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK---- 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~---- 281 (500)
..+|++|+|+++.|+.. ..|..|+.+++.|.++. |+++|||||||||||++|+|+|++.+.|++.+....+-
T Consensus 117 ~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKC-RLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHH-HHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 45899999999999876 78899999999998874 68999999999999999999999999999999887762
Q ss_pred --ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 282 --DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 282 --~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
....++.++..+. .|||+||||+|++.- .++=+. --+...-.++.||..|||
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQe----------------------lRGDVsEiVNALLTelDg 248 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQE----------------------LRGDVSEIVNALLTELDG 248 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHH----------------------hcccHHHHHHHHHHhccC
Confidence 3346777776664 799999999999741 111111 122234578999999999
Q ss_pred hhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHH
Q 041423 358 LWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAE 437 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~ 437 (500)
+.+ +++++.|++||+|+.||||++. ||...|+|..|+.++|..|++.|+..-+.+. ...+..++.
T Consensus 249 i~e--neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----------~~~~~~~~~ 313 (368)
T COG1223 249 IKE--NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----------DADLRYLAA 313 (368)
T ss_pred ccc--CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----------ccCHHHHHH
Confidence 964 5779999999999999999998 9999999999999999999999985443332 344556666
Q ss_pred HhCCCCCCCcHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 438 NLMPKSPSDNVEKCLS-SLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 438 ~l~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
...++|++|+.+..+. +|..+|...++....++.+.+++++
T Consensus 314 ~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~ 355 (368)
T COG1223 314 KTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKE 355 (368)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhh
Confidence 6666666666666664 7888998888888888888887764
No 16
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.1e-31 Score=276.23 Aligned_cols=281 Identities=23% Similarity=0.303 Sum_probs=212.7
Q ss_pred HHHhHHHHHHHhHHHHHHHhhcccccCCCCCC-CCCccccCceee-cccCCCccccccCChhhHHHHHHHHHHHhhChHH
Q 041423 158 TESYLQHVVKEGKEIRVRNRQRKLYTNSPGYK-WPSYKQTMWSHI-VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDF 235 (500)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~-~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~ 235 (500)
+...+|-++.-+-.+....++. ..+++. --++....-... .-....+|.+++|.++.|+++ ..+..|++.+..
T Consensus 100 ~~~~lp~il~~~~~~~~~~r~~----~~g~g~~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel-~EiVdfLk~p~k 174 (596)
T COG0465 100 LSTWLPFILLIGLGWFFFRRQA----QGGGGGGAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEEL-SELVDFLKNPKK 174 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcCCCCcccCCChHHHHHhcccccCcChhhhcCcHHHHHHH-HHHHHHHhCchh
Confidence 4567888887775554444431 111110 111111111111 123456899999999999999 557789999999
Q ss_pred HHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------CChHHHHHHHHhhc--CCeEEEecchhch
Q 041423 236 YARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------KDNTELRKLLIETT--SKSIIVIEDIDCS 307 (500)
Q Consensus 236 ~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------~~~~~l~~l~~~~~--~~~Il~iDdiD~~ 307 (500)
|...|...|+|+||+||||||||+||+|+|++.+.|++.++.++. ...+.+|.+|.++. .||||||||||..
T Consensus 175 y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 999999999999999999999999999999999999999988875 36788999999886 5999999999995
Q ss_pred hcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCe
Q 041423 308 LDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGR 387 (500)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR 387 (500)
|+.+... .+.++.....++++||.+|||+.. .+++||+++||+|+-|||||+||||
T Consensus 255 ----Gr~Rg~g------------------~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdVlD~ALlRpgR 310 (596)
T COG0465 255 ----GRQRGAG------------------LGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDVLDPALLRPGR 310 (596)
T ss_pred ----ccccCCC------------------CCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcccchHhhcCCCC
Confidence 3332110 111344556799999999999964 3569999999999999999999999
Q ss_pred eeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHH
Q 041423 388 MDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAE 467 (500)
Q Consensus 388 ~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 467 (500)
||++|.++.|+...|.+|++-++...... ..+....|+..+.++++++....+.++.+-+.++.+....
T Consensus 311 FDRqI~V~~PDi~gRe~IlkvH~~~~~l~-----------~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 311 FDRQILVELPDIKGREQILKVHAKNKPLA-----------EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred cceeeecCCcchhhHHHHHHHHhhcCCCC-----------CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 99999999999999999999776543221 1455566777777777888888888888888888777666
Q ss_pred HHHHHHHHHHH
Q 041423 468 RKQAEEERKQA 478 (500)
Q Consensus 468 ~~~~~~~~~~~ 478 (500)
..+..+++...
T Consensus 380 ~~~i~ea~drv 390 (596)
T COG0465 380 MRDIEEAIDRV 390 (596)
T ss_pred ccchHHHHHHH
Confidence 66666665554
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=244.09 Aligned_cols=244 Identities=21% Similarity=0.279 Sum_probs=194.9
Q ss_pred ecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 201 IVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
+.-.+-.|++++.|-.++.+.+.+.+...+-+++.|..+|+.+|+|+|||||||||||.+|+|+||..+.-++.+=-+.+
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 34455669999999999999999999999999999999999999999999999999999999999999998887755554
Q ss_pred ------CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 281 ------KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 281 ------~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
+...-++.+|..+. .-|||||||||.+ .|.|-.. ...+..+.++++-+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidai---ggarfdd-------------------g~ggdnevqrtmleli 305 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAI---GGARFDD-------------------GAGGDNEVQRTMLELI 305 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccc---cCccccC-------------------CCCCcHHHHHHHHHHH
Confidence 23445677776654 4699999999995 3443211 1114456678999999
Q ss_pred HHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCH
Q 041423 353 NFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITP 432 (500)
Q Consensus 353 ~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~sp 432 (500)
|.+||+.. .+++-|+|+||+|+.|||||+||||+|++++|+.|+.+.|..|++.+...-. .+.++-.
T Consensus 306 ~qldgfdp--rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms-----------verdir~ 372 (435)
T KOG0729|consen 306 NQLDGFDP--RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS-----------VERDIRF 372 (435)
T ss_pred HhccCCCC--CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc-----------cccchhH
Confidence 99999954 5678899999999999999999999999999999999999998876653211 1113333
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041423 433 ADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAE 479 (500)
Q Consensus 433 a~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 479 (500)
.-|+.++....+++...+|.++-+-+|+..++-..+++.-.++.+.-
T Consensus 373 ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 373 ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44455555555677788899999999999888888888888887763
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=5.2e-30 Score=266.28 Aligned_cols=243 Identities=24% Similarity=0.302 Sum_probs=186.7
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
..++.+|++|.|.+.++++|.+.+..++.+++.|...|+.+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999988776652
Q ss_pred -----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+ ..|+||||||||.++. .+... ..........++..+|+.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---kR~~~-------------------~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT---KRYDA-------------------TSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc---cCCCC-------------------CCcccHHHHHHHHHHHHH
Confidence 334466777554 4689999999999753 11100 000122335677889999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
+|++.. ..++.||+|||+++.||+|++||||||.+|+|+.|+.++|.+|++.++...... .++...+
T Consensus 314 Ldg~~~--~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-----------~dvdl~~ 380 (438)
T PTZ00361 314 LDGFDS--RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-----------EDVDLEE 380 (438)
T ss_pred Hhhhcc--cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-----------cCcCHHH
Confidence 999854 346899999999999999999999999999999999999999999987543211 1233334
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEE 480 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (500)
++....++++++....|.++...|+++.......++.+.++.+...
T Consensus 381 la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 381 FIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 4444444444444456788888888887777777777777776533
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=6.6e-30 Score=264.86 Aligned_cols=247 Identities=24% Similarity=0.292 Sum_probs=191.0
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
..+..+|++|+|.+++++++.+.+..++.+++.|...|+.+++|+|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999999887752
Q ss_pred -----ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+. .|+||||||||.++...+.. . .........++..+++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~---~-------------------~~~~~~~~~~l~~lL~~ 261 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDS---G-------------------TSGDREVQRTLMQLLAE 261 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccC---C-------------------CCccHHHHHHHHHHHHh
Confidence 3345667776553 68999999999975321110 0 00122334567888888
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
+|++.. ..+++||+|||+++.+|+||+||||||..|+|+.|+.++|.+|++.++....... ++...+
T Consensus 262 ld~~~~--~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-----------~~~~~~ 328 (389)
T PRK03992 262 MDGFDP--RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-----------DVDLEE 328 (389)
T ss_pred ccccCC--CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-----------cCCHHH
Confidence 888744 3468999999999999999999999999999999999999999999875432111 233455
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESREE 484 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (500)
++..+.++++++....|.++...++++.......++..+++.....+.+.
T Consensus 329 la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 329 LAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 55555555555556667788888888776666777777777776544433
No 20
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.8e-30 Score=268.30 Aligned_cols=183 Identities=21% Similarity=0.355 Sum_probs=149.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCE--------EEE
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV--------YDL 275 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i--------~~l 275 (500)
.++.+|++|+|.+.++++|.+.+..++.+++.|...|+++++|+|||||||||||++++++|++++.++ +.+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 356789999999999999999999999999999999999999999999999999999999999997652 222
Q ss_pred eec--cc------CChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCC
Q 041423 276 ELT--AV------KDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEE 341 (500)
Q Consensus 276 ~l~--~~------~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (500)
++. .+ .....++.+|..+. .|+||||||+|.++..++... +.
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~------------------------s~ 311 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV------------------------SS 311 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc------------------------cc
Confidence 222 21 23345666665543 589999999999763221110 11
Q ss_pred CcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 342 GSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 342 ~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
......++.||+.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.+++++|++.|+..
T Consensus 312 d~e~~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 312 DVETTVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hHHHHHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 22346789999999999653 5699999999999999999999999999999999999999999999864
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=264.04 Aligned_cols=222 Identities=23% Similarity=0.270 Sum_probs=183.3
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------ 280 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------ 280 (500)
..|+++.|..++|+.+.+.|..+.+.+..|.+.+++.+.|+|||||||||||.||.|+|..++..++.+.-..+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 281 KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 281 ~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
.++..+|.+|..+. .||||||||+|.+++.+|.. +.+...+.+++||..|||.
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-------------------------sTGVTDRVVNQlLTelDG~ 798 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-------------------------STGVTDRVVNQLLTELDGA 798 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-------------------------CCCchHHHHHHHHHhhccc
Confidence 46778999997764 79999999999987655543 6778889999999999999
Q ss_pred hhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHHHH
Q 041423 359 WSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADVAE 437 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~ 437 (500)
... .++.|+++|.+|+.|||||+||||+|+.++.+.|+..+|.+|++-.-.....+...+++-++. ..++|.||++.
T Consensus 799 Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ 876 (952)
T KOG0735|consen 799 EGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQS 876 (952)
T ss_pred ccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHH
Confidence 775 459999999999999999999999999999999999999999876654222222222333333 44899999987
Q ss_pred HhCCCCCCCcHHHHHHHHHHHHHHhH
Q 041423 438 NLMPKSPSDNVEKCLSSLIQALKEGK 463 (500)
Q Consensus 438 ~l~~~~~~~~~~~~~~~l~~~l~~~~ 463 (500)
.+-. .-+.++.+++.+..
T Consensus 877 ll~~--------A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 877 LLYN--------AQLAAVHEILKRED 894 (952)
T ss_pred HHHH--------HHHHHHHHHHHhcC
Confidence 7662 23455666665544
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.5e-29 Score=270.71 Aligned_cols=211 Identities=26% Similarity=0.379 Sum_probs=166.4
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.+..+|++++|.++.|+++.+ +..++..+..|...|..+++|+|||||||||||++++++|++++.+++.++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 456689999999999999975 5567899999999999999999999999999999999999999999999887654
Q ss_pred ---CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
.....++.+|..+ ..||||||||||.++...+.. ..........+++.||+.|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~----------------------~~~~~~~~~~~~~~lL~~~ 185 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG----------------------LGGGNDEREQTLNQLLVEM 185 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC----------------------cCCccHHHHHHHHHHHhhh
Confidence 2456788888776 468999999999975321110 0001223456889999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPAD 434 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~ 434 (500)
|++.+ ..+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++. ..++|++|
T Consensus 186 d~~~~--~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgad 263 (495)
T TIGR01241 186 DGFGT--NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGAD 263 (495)
T ss_pred ccccC--CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHH
Confidence 99854 3568999999999999999999999999999999999999999999987543322222333333 33677777
Q ss_pred HHHHh
Q 041423 435 VAENL 439 (500)
Q Consensus 435 i~~~l 439 (500)
|...+
T Consensus 264 l~~l~ 268 (495)
T TIGR01241 264 LANLL 268 (495)
T ss_pred HHHHH
Confidence 65443
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=3.6e-29 Score=279.46 Aligned_cols=207 Identities=23% Similarity=0.319 Sum_probs=166.6
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++++|.+..|+.|.+.+..++..++.|...|..+++|+|||||||||||++|+++|++++.+++.++.+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred --CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.+...++.+|..+ ..||||||||||.++..++.. .........++.||..||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~------------------------~~~~~~~~~~~~lL~~ld 583 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR------------------------FDTSVTDRIVNQLLTEMD 583 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC------------------------CCccHHHHHHHHHHHHhh
Confidence 3456788888766 468999999999986422211 022334678899999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 435 (500)
|+.. ..+++||+|||+++.||||++||||||.+|++++|+.++|.+|++.++.........++..+++ ..++|++||
T Consensus 584 g~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi 661 (733)
T TIGR01243 584 GIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADI 661 (733)
T ss_pred cccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHH
Confidence 9854 3569999999999999999999999999999999999999999998876433221111222222 225666665
Q ss_pred HH
Q 041423 436 AE 437 (500)
Q Consensus 436 ~~ 437 (500)
..
T Consensus 662 ~~ 663 (733)
T TIGR01243 662 EA 663 (733)
T ss_pred HH
Confidence 43
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=6.9e-29 Score=261.54 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=154.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++|+|.+.+|+.+.+....|. ......|+++++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34579999999999998877665553 33567899999999999999999999999999999999999988764
Q ss_pred --CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.+...++++|..+ .+||||+|||||.++.-.+.. ...+.....+..|++.++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~------------------------~d~~~~~rvl~~lL~~l~ 355 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK------------------------GDSGTTNRVLATFITWLS 355 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC------------------------CCchHHHHHHHHHHHHHh
Confidence 3456788888654 479999999999975311100 022345567788888887
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh--HHHHHHHhh-cCCCCHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL--FETIQKLME-DTKITPA 433 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l--~~~i~~l~~-~~~~spa 433 (500)
.. ...++||+|||+++.||||++|+||||..|+++.|+.++|.+|++.++....... ..++..+++ ..|||+|
T Consensus 356 ~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 356 EK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred cC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHH
Confidence 42 3568899999999999999999999999999999999999999999987532111 112333333 3367777
Q ss_pred HHHH
Q 041423 434 DVAE 437 (500)
Q Consensus 434 ~i~~ 437 (500)
||..
T Consensus 432 dI~~ 435 (489)
T CHL00195 432 EIEQ 435 (489)
T ss_pred HHHH
Confidence 6654
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.3e-29 Score=265.09 Aligned_cols=239 Identities=27% Similarity=0.365 Sum_probs=194.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.+..+|++++|.+..|+.+.+.+..++..++.|...|+.+++|+|||||||||||+||+|+|++++.+++.+..+++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
++...++.+|..+. .||||||||||.++..++.. ........+++||..+
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~-------------------------~~~~~~r~~~~lL~~~ 370 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS-------------------------EDGSGRRVVGQLLTEL 370 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC-------------------------CchHHHHHHHHHHHHh
Confidence 45678899998875 79999999999987432221 1222358999999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+... .+++||+|||+++.+|||++||||||..|+++.|+.++|..|++.++......+.. .+...++
T Consensus 371 d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~---------~~~~~~l 439 (494)
T COG0464 371 DGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAE---------DVDLEEL 439 (494)
T ss_pred cCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchh---------hhhHHHH
Confidence 999654 55899999999999999999999999999999999999999999999744332111 3444555
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEG-KEEAERKQAEEERKQA 478 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~ 478 (500)
++.+.+++++|....|.++...++++. ..+....+...+.++.
T Consensus 440 ~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 440 AEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 555555666777777888888888877 4455666666666664
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2e-28 Score=265.64 Aligned_cols=212 Identities=26% Similarity=0.368 Sum_probs=167.2
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
.....+|++|+|.++.|+++ ..+..+++.+..|...|..+++|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l-~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEF-EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHH-HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34457899999999999888 5567889999999999999999999999999999999999999999999999887652
Q ss_pred -----ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+. .||||||||||++...++... +........+++.||..
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~----------------------~~~~~e~~~~L~~LL~~ 312 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGI----------------------GGGNDEREQTLNQLLTE 312 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCC----------------------CCCcHHHHHHHHHHHhh
Confidence 3456777887764 689999999999753222110 00223345688999999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPA 433 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa 433 (500)
+|++.. ..+++||+|||+++.||+||+||||||.+|+++.|+.++|.+|++.++..........+..++. ..|++++
T Consensus 313 ~dg~~~--~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 313 MDGFKG--NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGA 390 (638)
T ss_pred hccccC--CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHH
Confidence 999854 3568999999999999999999999999999999999999999999987533222223344443 3467777
Q ss_pred HHHHHh
Q 041423 434 DVAENL 439 (500)
Q Consensus 434 ~i~~~l 439 (500)
||...+
T Consensus 391 DL~~lv 396 (638)
T CHL00176 391 DLANLL 396 (638)
T ss_pred HHHHHH
Confidence 776443
No 27
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=236.02 Aligned_cols=239 Identities=25% Similarity=0.345 Sum_probs=179.1
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC------
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK------ 281 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~------ 281 (500)
+|+.+.|.-.+..++++-|...+.++..+.++|+.+|.|++||||||||||.+++++|..++.+++.+..+.+.
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999988877763
Q ss_pred ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh
Q 041423 282 DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW 359 (500)
Q Consensus 282 ~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 359 (500)
...-++..|..+. .|||||+||||++. |++.++. ...+...+.||-+|+|.|||+.
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAig---GRr~se~-------------------Ts~dreiqrTLMeLlnqmdgfd 267 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIG---GRRFSEG-------------------TSSDREIQRTLMELLNQMDGFD 267 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhc---cEEeccc-------------------cchhHHHHHHHHHHHHhhccch
Confidence 2334577777765 68999999999953 4442211 1134456789999999999986
Q ss_pred hccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcccc-c--hhHHHHHHHhhcCCCCHHHHH
Q 041423 360 SACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVET-H--TLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 360 ~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~-~--~l~~~i~~l~~~~~~spa~i~ 436 (500)
.. +.+=+|+|||+++.|||||+||||+|+.+++|.|+...|..|++.+-..-+ | -.++.+.++.+ ++..+|+.
T Consensus 268 ~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~r 343 (388)
T KOG0651|consen 268 TL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLR 343 (388)
T ss_pred hc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHh
Confidence 64 447899999999999999999999999999999999999987766543211 1 12333444443 55555543
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESREE 484 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (500)
..|.++-+-+++....+...++....+.+.++.++-
T Consensus 344 ------------n~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkl 379 (388)
T KOG0651|consen 344 ------------NVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKKL 379 (388)
T ss_pred ------------hhcccccccccchhhHHHhHHHHHHHHHHHHHHHHh
Confidence 334444444444444444555555555554444433
No 28
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=3.9e-28 Score=276.26 Aligned_cols=210 Identities=18% Similarity=0.150 Sum_probs=159.8
Q ss_pred ChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC-----------------------------
Q 041423 232 SRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD----------------------------- 282 (500)
Q Consensus 232 ~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~----------------------------- 282 (500)
++....+.|..+++|+||+||||||||.||+|+|++.+.|++.++++.+-.
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 455677889999999999999999999999999999999999998766421
Q ss_pred --------------------hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCC
Q 041423 283 --------------------NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKE 340 (500)
Q Consensus 283 --------------------~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (500)
...++.+|..+ .+||||+|||||.+..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~------------------------------- 1746 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNV------------------------------- 1746 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCC-------------------------------
Confidence 01255667655 4799999999999641
Q ss_pred CCcchhcHhHHHHHHhhhhhc-cCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHH
Q 041423 341 EGSSKVTLSGLLNFIDGLWSA-CGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFE 419 (500)
Q Consensus 341 ~~~~~~~ls~lL~~ldg~~~~-~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 419 (500)
......+++.|++.|||.... ...+++||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+......+.
T Consensus 1747 ~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~- 1825 (2281)
T CHL00206 1747 NESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLE- 1825 (2281)
T ss_pred CccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCC-
Confidence 112235789999999987432 245789999999999999999999999999999999999999887654322111110
Q ss_pred HHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041423 420 TIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEE 480 (500)
Q Consensus 420 ~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (500)
...+...+++..+.+++++|.+..|.+|+..++++.+......+.+.++..+..
T Consensus 1826 -------~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1826 -------KKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred -------cccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 011345667777777777777788888999999988877777777777666543
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-28 Score=231.95 Aligned_cols=200 Identities=26% Similarity=0.353 Sum_probs=164.2
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------ 280 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------ 280 (500)
..|++|+|.+..|+.|.+.+..+++.+.+|...-.||+ |+|||||||||||.||+|+|.+.+-.++.++-+++
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pwr-giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWR-GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcce-eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 46789999999999999999999999999998888885 99999999999999999999999999999988876
Q ss_pred CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 281 KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 281 ~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
++..-++.+|.-+ ..|+||||||||.++ |.|... ....++++-.+||..|.|+
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDslc---g~r~en----------------------EseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSLC---GSRSEN----------------------ESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhhc---cCCCCC----------------------chHHHHHHHHHHHHhhhcc
Confidence 2333445666554 369999999999854 444211 3445678889999999998
Q ss_pred hhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHH-HHHHHhh-cCCCCHHHH
Q 041423 359 WSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFE-TIQKLME-DTKITPADV 435 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~-~~~~spa~i 435 (500)
-. ..++++|+.+||.|+.||.|++| ||+..|++|.|+..+|..+++.+++..+|.+.+ +++.+.. ..|||.+||
T Consensus 264 G~-d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 264 GN-DNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDI 339 (439)
T ss_pred cc-CCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCce
Confidence 64 34679999999999999999999 999999999999999999999999988887643 2444433 235555554
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=3e-27 Score=243.77 Aligned_cols=240 Identities=24% Similarity=0.311 Sum_probs=181.6
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
..+..+|++++|.++++++|.+.+..++.++..|..+|+.+++|+|||||||||||++|+++|+.++.+++.+....+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999887655431
Q ss_pred -----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+ ..|+||||||+|.++. .+... ...........+..+++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---~~~~~-------------------~~~~~~~~~~~l~~ll~~ 252 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---KRTDS-------------------GTSGDREVQRTLMQLLAE 252 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---ccccC-------------------CCCccHHHHHHHHHHHHH
Confidence 123345566544 3689999999999752 11100 000122334677888888
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
+|++.. ..++.||+|||+++.+|++++||||||..|+++.|+.++|.+|++.++...... .+++..+
T Consensus 253 ld~~~~--~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-----------~~~~~~~ 319 (364)
T TIGR01242 253 LDGFDP--RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-----------EDVDLEA 319 (364)
T ss_pred hhCCCC--CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-----------ccCCHHH
Confidence 888743 346899999999999999999999999999999999999999999887543211 1234455
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQ 477 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 477 (500)
++..+.++++++....|.++...++++.......++.++++.+
T Consensus 320 la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 320 IAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 5555555555566667778888888876655556666555543
No 31
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=8.6e-27 Score=231.54 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=122.5
Q ss_pred HHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------CChHHHHHHHHhhc-------CCeEEE
Q 041423 234 DFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------KDNTELRKLLIETT-------SKSIIV 300 (500)
Q Consensus 234 ~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------~~~~~l~~l~~~~~-------~~~Il~ 300 (500)
.+....|+.+|++++||||||||||++++++|++++.+++.++..++ +....++.+|..+. +|||||
T Consensus 138 n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLF 217 (413)
T PLN00020 138 NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLF 217 (413)
T ss_pred hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 44455889999999999999999999999999999999999988876 35677899997664 599999
Q ss_pred ecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh--------h--hccCCCeEEEE
Q 041423 301 IEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL--------W--SACGGERLIVF 370 (500)
Q Consensus 301 iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~--------~--~~~~~~~ivI~ 370 (500)
|||||.++. .+.. ....-..+.....|++.+|+. | ......++||+
T Consensus 218 IDEIDA~~g---~r~~---------------------~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIa 273 (413)
T PLN00020 218 INDLDAGAG---RFGT---------------------TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIV 273 (413)
T ss_pred EehhhhcCC---CCCC---------------------CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEE
Confidence 999999763 2210 001112344558899998863 3 11234688999
Q ss_pred EcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 371 TTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 371 TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
|||+++.|||||+||||||..+ ..|+.++|..|++.++...
T Consensus 274 TTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~ 314 (413)
T PLN00020 274 TGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD 314 (413)
T ss_pred eCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC
Confidence 9999999999999999999975 5899999999999888654
No 32
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=233.99 Aligned_cols=221 Identities=23% Similarity=0.323 Sum_probs=180.7
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhC-CCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC---
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIG-KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD--- 282 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~--- 282 (500)
.+|+++.|.+.+++++.+.+...++.+++|...+ ..+++|+|||||||||||++|+|+|.+.+.+++.++.+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 4799999999999999999999999999997433 456789999999999999999999999999999999998743
Q ss_pred ---hHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 283 ---NTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 283 ---~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
..-++.+|.-+. +||||||||+|.++ |+|.+. .+......-++|...+||
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L---~~R~s~----------------------dHEa~a~mK~eFM~~WDG 223 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFL---GQRRST----------------------DHEATAMMKNEFMALWDG 223 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHH---hhcccc----------------------hHHHHHHHHHHHHHHhcc
Confidence 223344554443 69999999999976 333211 344556778889999999
Q ss_pred hhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHH
Q 041423 358 LWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAE 437 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~ 437 (500)
+.+..+..++|+++||+|..||.|++| ||...++++.|+.++|.+|++-+|..+..+ ..+...+|+.
T Consensus 224 l~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-----------~~vD~~~iA~ 290 (386)
T KOG0737|consen 224 LSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-----------DDVDLDEIAQ 290 (386)
T ss_pred ccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-----------cccCHHHHHH
Confidence 988766668888899999999999999 999999999999999999999999765332 2566777888
Q ss_pred HhCCCCCCCcHHHHHHHHHHHHHHhHHH
Q 041423 438 NLMPKSPSDNVEKCLSSLIQALKEGKEE 465 (500)
Q Consensus 438 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 465 (500)
.+.+++++|..+.|..+....++.--+.
T Consensus 291 ~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 291 MTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred hcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 8888888888888888877777655443
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=1.4e-26 Score=253.75 Aligned_cols=235 Identities=23% Similarity=0.314 Sum_probs=173.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
...+|+++.|.+..++++. ++..++..+..|...|...++|+||+||||||||++++++|++++.+++.++.+.+
T Consensus 147 ~~~~~~di~g~~~~~~~l~-~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVA-ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHH-HHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 3457999999999999884 55667888888999999999999999999999999999999999999999988754
Q ss_pred --CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.....++.+|..+. .||||||||||.+...++.. ..........+++.||..||
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~----------------------~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG----------------------LGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC----------------------CCCCchHHHHHHHHHHHhhh
Confidence 23456777886654 68999999999975321110 00022334568999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
|+.+. .+++||+|||+++.||||++||||||.+|+++.|+.++|.+|++.|+....... .+....++
T Consensus 284 g~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-----------~~d~~~la 350 (644)
T PRK10733 284 GFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-----------DIDAAIIA 350 (644)
T ss_pred cccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-----------cCCHHHHH
Confidence 98653 568999999999999999999999999999999999999999999986543211 12223333
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEER 475 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 475 (500)
+.+.++++++....|.++...+++..+......+.+.++
T Consensus 351 ~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 351 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 444444444444445555555555544434444444433
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=4.2e-24 Score=238.81 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=162.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
+..+|++|+|.++.++.|.+.+..++.+++.|...|+.+++|+|||||||||||++++++|++++.+++.++...+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred ---ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 ---DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ---~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....++.+|..+ ..|+||||||||.++. .+.. .........++.|++.+|
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---~r~~----------------------~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAP---KREE----------------------VTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---cccC----------------------CcchHHHHHHHHHHHHhh
Confidence 345677888765 3689999999999753 1100 012223467889999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 435 (500)
++.. ...++||+|||+++.||++++|+||||.+|+++.|+.++|.+|++.+...........+..+.+ ..+++++++
T Consensus 308 ~l~~--~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl 385 (733)
T TIGR01243 308 GLKG--RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADL 385 (733)
T ss_pred cccc--CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHH
Confidence 9854 3457888899999999999999999999999999999999999997765332111111222322 336777766
Q ss_pred HH
Q 041423 436 AE 437 (500)
Q Consensus 436 ~~ 437 (500)
..
T Consensus 386 ~~ 387 (733)
T TIGR01243 386 AA 387 (733)
T ss_pred HH
Confidence 54
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-24 Score=239.36 Aligned_cols=222 Identities=23% Similarity=0.275 Sum_probs=175.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-----EEE----
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD-----VYD---- 274 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-----i~~---- 274 (500)
+.-..|++|+|.+..+.++.+.+...+..++.|...++.+|||+|||||||||||++++|+|..+... ++.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 34458999999999999999999999999999999999999999999999999999999999988322 221
Q ss_pred --EeecccCChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhH
Q 041423 275 --LELTAVKDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSG 350 (500)
Q Consensus 275 --l~l~~~~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 350 (500)
++-...+.+..++-+|.++. +|+|||+||||-+...+... .+..+...++.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-------------------------qEqih~SIvST 393 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-------------------------QEQIHASIVST 393 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-------------------------HHHhhhhHHHH
Confidence 12222356678888887775 79999999999876533221 23345568899
Q ss_pred HHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCC
Q 041423 351 LLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKI 430 (500)
Q Consensus 351 lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~ 430 (500)
||..|||+.+ .+.++||.+||+++.+||||+||||||..++|++|+.++|..|+..+-..-.+.... .
T Consensus 394 LLaLmdGlds--RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~----------~ 461 (1080)
T KOG0732|consen 394 LLALMDGLDS--RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISR----------E 461 (1080)
T ss_pred HHHhccCCCC--CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCH----------H
Confidence 9999999966 467999999999999999999999999999999999999999988776544333222 2
Q ss_pred CHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHh
Q 041423 431 TPADVAENLMPKSPSDNVEKCLSSLIQALKEG 462 (500)
Q Consensus 431 spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 462 (500)
.+..+++.+.++.+++....|-++.+.++++.
T Consensus 462 l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 462 LLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 23445566666666777777777777777643
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=219.97 Aligned_cols=206 Identities=25% Similarity=0.328 Sum_probs=170.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
++.+ ..+.|...+...+.+.+...+..+..+...|.++++|+|+|||||||||.+++++|++.+..++.++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78888888999999999999999999999999999999999999999999999999999999999988865
Q ss_pred --CChHHHHHHHHhhc--C-CeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 --KDNTELRKLLIETT--S-KSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~-~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
++.+.|++.|..+. + |+||+|||||.++. ++.. ......++.++|+..+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p---~r~~-----------------------~~~~e~Rv~sqlltL~ 312 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP---KREG-----------------------ADDVESRVVSQLLTLL 312 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC---cccc-----------------------cchHHHHHHHHHHHHH
Confidence 57788999998874 4 99999999999763 2211 1124567899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPAD 434 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~ 434 (500)
||+.+ ..++||++|||+|+.|||++.| ||||..++++.|+..+|.+|++.+.....+.-..+++.++. .+|++.||
T Consensus 313 dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaD 389 (693)
T KOG0730|consen 313 DGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGAD 389 (693)
T ss_pred hhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHH
Confidence 99953 4679999999999999999999 99999999999999999999999886654442233444444 55777777
Q ss_pred HHHHhC
Q 041423 435 VAENLM 440 (500)
Q Consensus 435 i~~~l~ 440 (500)
++..+-
T Consensus 390 L~~l~~ 395 (693)
T KOG0730|consen 390 LAALCR 395 (693)
T ss_pred HHHHHH
Confidence 665443
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-23 Score=212.03 Aligned_cols=218 Identities=25% Similarity=0.312 Sum_probs=173.2
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-----
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK----- 281 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~----- 281 (500)
..|+++.|....|+.+.+.+...+.+++.|..+-- +.+|+||.||||||||+|++|||.+.+..++.++.+++.
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~-p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~G 228 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE-PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVG 228 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhcccc-ccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccC
Confidence 56789999999999999999999999999987754 456999999999999999999999999999999988873
Q ss_pred -ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 282 -DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 282 -~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
...-++.+|.-+ .+|+|+||||||.++. .|. +.....+.....++|..+++.
T Consensus 229 e~eK~vralf~vAr~~qPsvifidEidslls---~Rs----------------------~~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 229 ESEKLVRALFKVARSLQPSVIFIDEIDSLLS---KRS----------------------DNEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEechhHHHHh---hcC----------------------CcccccchhhhhHHHhhhccc
Confidence 233456666444 4799999999999874 221 114556778889999999999
Q ss_pred hhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHH
Q 041423 359 WSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAEN 438 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~ 438 (500)
.+...+.++||+|||.|+.+|.|++| ||-..+++|.|+.+.|..++.+++....+.+.+ ...+.|+..
T Consensus 284 ~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~----------~d~~~l~~~ 351 (428)
T KOG0740|consen 284 NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSD----------LDISLLAKV 351 (428)
T ss_pred cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccH----------HHHHHHHHH
Confidence 88877788899999999999999999 999999999999999999999999876554431 122444455
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHh
Q 041423 439 LMPKSPSDNVEKCLSSLIQALKEG 462 (500)
Q Consensus 439 l~~~~~~~~~~~~~~~l~~~l~~~ 462 (500)
+.+++++|..+.|.+++..-++..
T Consensus 352 Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 352 TEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred hcCcccccHHHHHHHhhcCchhhc
Confidence 555666666666666655555443
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=212.23 Aligned_cols=181 Identities=23% Similarity=0.372 Sum_probs=140.9
Q ss_pred ChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCE-EEEeecc------cCChHHHHHHHHhhc----------
Q 041423 232 SRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV-YDLELTA------VKDNTELRKLLIETT---------- 294 (500)
Q Consensus 232 ~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i-~~l~l~~------~~~~~~l~~l~~~~~---------- 294 (500)
.++...++|+++-+|+|||||||||||.+|+.|..-|+..- -.++-.. .+++.++|++|..+.
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 57888999999999999999999999999999999886531 1222222 257889999998763
Q ss_pred CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC
Q 041423 295 SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY 374 (500)
Q Consensus 295 ~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~ 374 (500)
.-.||+|||||++|.-+|... ++.+.....+++||.-|||+.+. .+++||.-||+
T Consensus 324 gLHIIIFDEiDAICKqRGS~~-----------------------g~TGVhD~VVNQLLsKmDGVeqL--NNILVIGMTNR 378 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMA-----------------------GSTGVHDTVVNQLLSKMDGVEQL--NNILVIGMTNR 378 (744)
T ss_pred CceEEEehhhHHHHHhcCCCC-----------------------CCCCccHHHHHHHHHhcccHHhh--hcEEEEeccCc
Confidence 248999999999986555432 14667788999999999999776 56999999999
Q ss_pred cCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc-ccc------hhHHHHHHHhhcCCCCHHHHHHHh
Q 041423 375 VEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV-ETH------TLFETIQKLMEDTKITPADVAENL 439 (500)
Q Consensus 375 ~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~-~~~------~l~~~i~~l~~~~~~spa~i~~~l 439 (500)
++.||+||+||||+.++++++.|+++.|.+|++.+-.. ..+ -...++.++.+ +||.|||...+
T Consensus 379 ~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTK--NfSGAEleglV 448 (744)
T KOG0741|consen 379 KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTK--NFSGAELEGLV 448 (744)
T ss_pred hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc--CCchhHHHHHH
Confidence 99999999999999999999999999999998766532 111 12233444433 77777775443
No 39
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.88 E-value=1.2e-22 Score=168.82 Aligned_cols=96 Identities=49% Similarity=0.757 Sum_probs=91.0
Q ss_pred hchHHHHHHHHHhHHHHhc-ccCCceEEEEeeecCCcCCccHHHHHHHHHhccccccccCceEEeecCCCCCeEEeecCC
Q 041423 30 YCPYEVRRHFEKYTHRIMG-FFYPYIKISIHEFTGDRLKRSEAYAAVEAYLSVNSSKSAKRLKAEMGKDSSNLVLSMDEY 108 (500)
Q Consensus 30 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~i~E~~~~~~~~ne~Y~~~~~yLs~~~~~~~~~l~v~~~~~s~~~~~~~~~~ 108 (500)
|+|++|+.++.+++++++. +++||+||+|+|++| ++.|++|+++++||++++++++++|+++.+++++++++++++|
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g--~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~ 78 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDG--LSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDG 78 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCC--ccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCC
Confidence 6899999999999988765 999999999999974 8899999999999999999999999999999999999999999
Q ss_pred CceecccCCeeEEEEEeee
Q 041423 109 ERVTDEFRGVKVWWVSSKV 127 (500)
Q Consensus 109 ~~v~d~f~g~~~~W~~~~~ 127 (500)
|+|+|+|+|+++||..++.
T Consensus 79 e~V~D~F~Gv~v~W~~~~~ 97 (98)
T PF14363_consen 79 EEVVDVFEGVKVWWSSVCT 97 (98)
T ss_pred CEEEEEECCEEEEEEEEcc
Confidence 9999999999999999865
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.9e-19 Score=157.76 Aligned_cols=123 Identities=29% Similarity=0.554 Sum_probs=98.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC------ChHHHHHHHHhh--cC-CeEEEecchhchhcccCcchhh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK------DNTELRKLLIET--TS-KSIIVIEDIDCSLDLTGQRKKK 317 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~------~~~~l~~l~~~~--~~-~~Il~iDdiD~~~~~~g~~~~~ 317 (500)
+||+||||||||++++++|+.++.+++.+++..+. ....+..+|..+ .. |+||+|||+|.++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~------ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS------ 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC------
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc------
Confidence 68999999999999999999999999999988874 345667777765 24 8999999999976321
Q ss_pred hcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccC
Q 041423 318 AEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSY 396 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~ 396 (500)
...........+..|++.++..... ..+++||+|||.++.++++++| +||+.+|++|.
T Consensus 75 -------------------~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 75 -------------------QPSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -------------------STSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -------------------ccccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 0002334556788899999988653 3468999999999999999998 99999999874
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-17 Score=165.13 Aligned_cols=172 Identities=24% Similarity=0.272 Sum_probs=125.4
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
...+|+.|++.+.+++.|.+....--+. .....+-|++|||||||||||++++-||.+.|.++..+.-.++.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 3446999999999999885433332222 22344567999999999999999999999999998776555552
Q ss_pred --ChHHHHHHHHhhc---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 --DNTELRKLLIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 --~~~~l~~l~~~~~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.-..+.++|.-.. ..-+|||||.|.++.-+... ......+..|+.||-- .
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt------------------------ymSEaqRsaLNAlLfR-T 479 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT------------------------YMSEAQRSALNALLFR-T 479 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh------------------------hhcHHHHHHHHHHHHH-h
Confidence 3456677776553 46788999999976311110 0122334455555422 2
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
|-. ...++++++||.|+.+|.|+-. |||..|+||+|..++|..|+..||.
T Consensus 480 Gdq---SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 480 GDQ---SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred ccc---ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 322 2458899999999999999999 9999999999999999999999985
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=2.2e-17 Score=154.84 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=108.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCCh
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDN 283 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~ 283 (500)
-.|.+|++++|++.++..+.-.+...... + ..-..+|||||||+||||||..||++++.++...+...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------G-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------T-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------C-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 46889999999999988764433332221 1 112379999999999999999999999999999888778788
Q ss_pred HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh----
Q 041423 284 TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW---- 359 (500)
Q Consensus 284 ~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~---- 359 (500)
.++..++.....+.|||||||+.+-. .....|+..|+...
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk------------------------------------~~qe~LlpamEd~~idii 133 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNK------------------------------------AQQEILLPAMEDGKIDII 133 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--H------------------------------------HHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhccH------------------------------------HHHHHHHHHhccCeEEEE
Confidence 89999999888999999999998521 11112233332110
Q ss_pred -hccC---------CCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcccc
Q 041423 360 -SACG---------GERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVET 414 (500)
Q Consensus 360 -~~~~---------~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 414 (500)
.... ....+|.+|+....|.+.|+. ||....++.+++.++..+|+++......
T Consensus 134 iG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~ 196 (233)
T PF05496_consen 134 IGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILN 196 (233)
T ss_dssp BSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT
T ss_pred eccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhC
Confidence 0000 225899999999999999988 9999999999999999999987765443
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.9e-18 Score=164.23 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=127.3
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHh-hCCCcccceeeeCCCCCcHHHHHHHHHHHhCC---------CEEEEeec
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYAR-IGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY---------DVYDLELT 278 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~-~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~---------~i~~l~l~ 278 (500)
|++|+.+.++|++++.....-+...+.-.+ .=+.|.|-+|||||||||||||++|+|..|.. .++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 567888899999998776655543222111 12668888999999999999999999998832 24556655
Q ss_pred cc------CChHHHHHHHHhhc-----CC--eEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcch
Q 041423 279 AV------KDNTELRKLLIETT-----SK--SIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSK 345 (500)
Q Consensus 279 ~~------~~~~~l~~l~~~~~-----~~--~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (500)
++ ++..-+.++|.+.. .. ..++|||++.+...+..-++ .......-
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S---------------------~~EpsDaI 279 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASS---------------------RNEPSDAI 279 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhc---------------------CCCCchHH
Confidence 54 23344455665542 22 44578999987532111000 00122334
Q ss_pred hcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 346 VTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 346 ~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
+.++.+|..||.+.. ..++++.+|+|-.+.||.|+.. |-|...++++|+.+.+..|++..+.
T Consensus 280 RvVNalLTQlDrlK~--~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 280 RVVNALLTQLDRLKR--YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHHHHHHHHHhcc--CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 789999999999955 4678899999999999999999 9999999999999999999887763
No 44
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.1e-17 Score=170.96 Aligned_cols=221 Identities=23% Similarity=0.332 Sum_probs=147.7
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH---
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR--- 287 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~--- 287 (500)
+-.|..++|++|++.|.--.- .|-.-+.-++|+||||.||||++++||..||..|+.+++..+.+..+++
T Consensus 412 DHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 346778899988886642111 1222223488999999999999999999999999999999998877764
Q ss_pred ---------HHHHhh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 288 ---------KLLIET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 288 ---------~l~~~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
+++... ..+.+++|||||.+ | +....+.++++++.+++++... |
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKl----G--~g~qGDPasALLElLDPEQNan-----------------F 541 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKL----G--SGHQGDPASALLELLDPEQNAN-----------------F 541 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhh----C--CCCCCChHHHHHHhcChhhccc-----------------h
Confidence 222222 25789999999995 3 1223345566677776654322 2
Q ss_pred Hhhhhhcc--CCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCH
Q 041423 355 IDGLWSAC--GGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITP 432 (500)
Q Consensus 355 ldg~~~~~--~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~sp 432 (500)
+|.+..-. =..+++|+|.|..+.|+++|+. ||.+ |+++-+..++...|+++|| +.......+++|
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yL----------ip~a~~~~gl~~ 608 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYL----------IPQALKDCGLKP 608 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhh----------hhHHHHHcCCCH
Confidence 22221100 0347999999999999999999 8844 9999999999999999999 666777778888
Q ss_pred HHHH--HHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041423 433 ADVA--ENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQ 477 (500)
Q Consensus 433 a~i~--~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 477 (500)
+++. +... ..=+...|.++-+..|++..+..-.+.+-+-++.
T Consensus 609 e~v~is~~al---~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 609 EQVKISDDAL---LALIERYCREAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HhcCccHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7752 1111 0113344555555566555555444444333333
No 45
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.7e-17 Score=172.18 Aligned_cols=183 Identities=22% Similarity=0.264 Sum_probs=133.0
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH----
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR---- 287 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~---- 287 (500)
-.|.+++|++|++.+.-.... +..-..-++|+||||+|||||+++||..++..++.+++..+.+.++++
T Consensus 325 HYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 367788999888866433322 111112378999999999999999999999999999999999988875
Q ss_pred --------HHHHhh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 288 --------KLLIET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 288 --------~l~~~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+++..+ ..+.+++|||||.+.. +-...+++++++.++|++.....+..-....+|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s------s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL------- 464 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS------SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL------- 464 (782)
T ss_pred cccccCChHHHHHHHHhCCcCCeEEeechhhccC------CCCCChHHHHHhhcCHhhcCchhhccccCccch-------
Confidence 222222 2478999999999632 122344566777777766543332222222222
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
.++++|+|.|..+.|+.+|+. ||. .|+++.++.++...|+++|| +.+.+++.++.+.++
T Consensus 465 --------S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L----------iPk~~~~~gL~~~el 523 (782)
T COG0466 465 --------SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL----------IPKQLKEHGLKKGEL 523 (782)
T ss_pred --------hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc----------chHHHHHcCCCccce
Confidence 247999999999999999999 884 49999999999999999999 666677667766554
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=3.1e-16 Score=154.58 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=116.8
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcc---cceeeeCCCCCcHHHHHHHHHHHhC-------CCEEEEeec
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWK---RGYLLYGPPGTGKSTMIAAMANLLN-------YDVYDLELT 278 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~---rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~l~ 278 (500)
+++++|.+++|+.|.+.+ .+..........|.... .+++|+||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~-~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIY-AWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999996554 45544455556676533 3589999999999999999998752 245555555
Q ss_pred ccC------ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 279 AVK------DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 279 ~~~------~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
.+. ....++.+|..+ .++||||||+|.+.. +. ........+..|+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~~--------------------------~~~~~~~~i~~Ll 134 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--GG--------------------------EKDFGKEAIDTLV 134 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--CC--------------------------ccchHHHHHHHHH
Confidence 432 234556666554 468999999998641 10 0111233456677
Q ss_pred HHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 353 NFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 353 ~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
..++.. ....++|++++..+ .++|+|.+ ||+.+|+|+.++.+++.+|++.++...
T Consensus 135 ~~~e~~----~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 135 KGMEDN----RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHhcc----CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 777653 23456666654322 37889998 999999999999999999999998643
No 47
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.73 E-value=9.7e-17 Score=152.48 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=141.8
Q ss_pred CceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEE
Q 041423 197 MWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVY 273 (500)
Q Consensus 197 ~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~ 273 (500)
....|....|..+++|+|.+.+|+.|++....|+.+ .+..++||||++||||||+++|+.+++ |+.++
T Consensus 14 ~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 14 YLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred cEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 455666677889999999999999999999999987 245689999999999999999999977 56677
Q ss_pred EEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 274 DLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 274 ~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
.+.-..+.+-..+...+...+.+.|||+||+-. .........|..
T Consensus 85 ev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsF-----------------------------------e~~d~~yk~LKs 129 (249)
T PF05673_consen 85 EVSKEDLGDLPELLDLLRDRPYKFILFCDDLSF-----------------------------------EEGDTEYKALKS 129 (249)
T ss_pred EECHHHhccHHHHHHHHhcCCCCEEEEecCCCC-----------------------------------CCCcHHHHHHHH
Confidence 888878888888888888889999999999743 223345677888
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccH-----------------------HHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDP-----------------------ALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~-----------------------aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.|||--...+++++|.+|+|+...+.+ +|-. ||...|.|..|+.++..+|++.|+
T Consensus 130 ~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 130 VLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred HhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHH
Confidence 899877777899999999996433222 4555 999999999999999999999998
Q ss_pred cccc
Q 041423 411 NVET 414 (500)
Q Consensus 411 ~~~~ 414 (500)
....
T Consensus 208 ~~~g 211 (249)
T PF05673_consen 208 ERYG 211 (249)
T ss_pred HHcC
Confidence 5443
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=4.8e-16 Score=158.25 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=122.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
.|.+|++++|.++.++.+...+...... + ..++++|||||||||||++++++|++++.++..++........
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 4779999999999998886666433221 2 2345899999999999999999999999998887776666677
Q ss_pred HHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh-----
Q 041423 285 ELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW----- 359 (500)
Q Consensus 285 ~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~----- 359 (500)
.+..++.....+.||||||||.+... ....+.+.++...
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~------------------------------------~~e~l~~~~e~~~~~~~l 135 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPV------------------------------------VEEILYPAMEDFRLDIMI 135 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchH------------------------------------HHHHHHHHHHhcceeeee
Confidence 78888888888999999999985310 0001122222110
Q ss_pred ----h-----ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 360 ----S-----ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 360 ----~-----~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
+ ..-...++|++||.+..++++|.+ ||...+.|++++.+++.++++......
T Consensus 136 ~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 136 GKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred ccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 0 001236789999999999999988 888899999999999999999887543
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=99.70 E-value=7.7e-16 Score=153.21 Aligned_cols=169 Identities=18% Similarity=0.253 Sum_probs=119.3
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCccc-c--eeeeCCCCCcHHHHHHHHHHHhC-------CCEEEEeecc
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKR-G--YLLYGPPGTGKSTMIAAMANLLN-------YDVYDLELTA 279 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~r-g--~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~l~~ 279 (500)
++++|.+++|++|.+.+ .++.....+...|...++ | ++|+||||||||++|+++|..+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~-~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIA-ALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 47999999999997655 445556677778876542 4 79999999999999999999762 2466666544
Q ss_pred cC------ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 280 VK------DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 280 ~~------~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
+. +......++..+ .++||||||+|.+....+ ...........|+.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~---------------------------~~~~~~e~~~~L~~ 153 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN---------------------------ERDYGSEAIEILLQ 153 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC---------------------------ccchHHHHHHHHHH
Confidence 31 223344555543 468999999998642100 11123445667777
Q ss_pred HHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 354 FIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
.|+.. ..+++||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++...
T Consensus 154 ~me~~----~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 154 VMENQ----RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHhcC----CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77743 24567777765321 24699999 999999999999999999999998654
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=1.9e-15 Score=150.44 Aligned_cols=168 Identities=16% Similarity=0.224 Sum_probs=121.2
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCc---ccceeeeCCCCCcHHHHHHHHHHHhC-------CCEEEEeeccc
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAW---KRGYLLYGPPGTGKSTMIAAMANLLN-------YDVYDLELTAV 280 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~l~~~ 280 (500)
.++|.+++|++|.+.+ .++..+..+.+.|+.. ..+++|+||||||||++|+++|..+. .+++.+++..+
T Consensus 23 ~l~Gl~~vk~~i~e~~-~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIA-ALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHH-HHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 6899999999986544 4476777788888764 34799999999999999999998773 25777765443
Q ss_pred C------ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 K------DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ~------~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
. +...+..+|..+ .+++|||||+|.+.. .+. ...........|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~---~~~------------------------~~~~~~~~~~~Ll~~ 153 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYR---PDN------------------------ERDYGQEAIEILLQV 153 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhcc---CCC------------------------ccchHHHHHHHHHHH
Confidence 1 223455566554 469999999998531 100 111233456677888
Q ss_pred HhhhhhccCCCeEEEEEcCCc--Cc---ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 355 IDGLWSACGGERLIVFTTNYV--EK---LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~--~~---lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
|+.- ..+++||++++.. +. ++|+|.+ ||+.+|+||.++.+++..|++.++...
T Consensus 154 le~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 154 MENQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 8742 3456777776542 32 4899999 999999999999999999999998653
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=1.4e-15 Score=170.92 Aligned_cols=158 Identities=26% Similarity=0.291 Sum_probs=112.1
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH------
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT------ 284 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~------ 284 (500)
++.|.+++|+.|.+.+...... +...+..+||+||||||||++|++||+.++.+++.++++...+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 3778888898887765533221 222234699999999999999999999999999999877654332
Q ss_pred ---------HHHHHHHhhc-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 285 ---------ELRKLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 285 ---------~l~~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
.+...|.... .++||||||||.+.. +.+ ....+.||..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~~~------------------------------~~~~~aLl~~ 441 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--SFR------------------------------GDPASALLEV 441 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--ccC------------------------------CCHHHHHHHh
Confidence 3334444432 456999999999641 000 0123445555
Q ss_pred Hhhhhh-----------ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 355 IDGLWS-----------ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 355 ldg~~~-----------~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
+|.... ..-.++++|+|||.++.|+++|++ ||+ .|+|+.++.+++..|+++|+
T Consensus 442 ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 442 LDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred cCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 552100 001357899999999999999999 885 58999999999999999998
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.9e-15 Score=152.36 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=117.4
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR 287 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~ 287 (500)
+|++++|+++.++.|...+....... ..+.+++||||||||||++++++|+.++.++..+..........+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 68999999999988876664433221 2234799999999999999999999999998777766555666777
Q ss_pred HHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh--------
Q 041423 288 KLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW-------- 359 (500)
Q Consensus 288 ~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~-------- 359 (500)
..+.....+.+|||||||.+..- ....|++.++...
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~------------------------------------~~e~l~~~~~~~~~~~v~~~~ 117 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPA------------------------------------VEELLYPAMEDFRLDIVIGKG 117 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHH------------------------------------HHHHhhHHHhhhheeeeeccC
Confidence 77777778899999999985310 0011222221110
Q ss_pred ------hccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 360 ------SACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 360 ------~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.......++|++||++..+++++++ ||...+.++.++.++..++++.....
T Consensus 118 ~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 118 PSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred ccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 0011236889999999999999998 88888999999999999999877653
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.7e-15 Score=144.85 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=127.6
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
.|.+|++.+|++.+|+.+.=.|..-..+.+ .-..+|||||||.||||||..||+++|.++-..+-..++...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 488999999999999887554444333321 223799999999999999999999999999998888899999
Q ss_pred HHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhh----hhhccCCCCCCcchhcHhHHHHHHhhhhh
Q 041423 285 ELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDK----EISRKEPKEEGSSKVTLSGLLNFIDGLWS 360 (500)
Q Consensus 285 ~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ls~lL~~ldg~~~ 360 (500)
+|..++......-|+|||||+.+.. .+++.+-+... +..-+.+......+..+
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL------------ 149 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL------------ 149 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEeccC------------
Confidence 9999999999999999999998632 12222211111 11001010111111111
Q ss_pred ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 361 ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 361 ~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+|.+|.+...|...|.. ||.+..++.+++.++...|+.+.-..
T Consensus 150 ---ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 150 ---PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKI 196 (332)
T ss_pred ---CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHH
Confidence 236899999999999999998 99999999999999999998887644
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=8.6e-15 Score=156.47 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=120.9
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK 281 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~ 281 (500)
.-..|.+|++|+|+++.++.+...+..+..+ . +++++|||||||||||++|+++|++++++++.++.+...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------K-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------C-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 3457899999999999999998887766632 2 257899999999999999999999999999999988876
Q ss_pred ChHHHHHHHHhhc--------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 282 DNTELRKLLIETT--------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 282 ~~~~l~~l~~~~~--------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
....+..+..... .+.+|+|||+|.+.. ......+..|++
T Consensus 77 ~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~--------------------------------~~d~~~~~aL~~ 124 (482)
T PRK04195 77 TADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG--------------------------------NEDRGGARAILE 124 (482)
T ss_pred cHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc--------------------------------ccchhHHHHHHH
Confidence 6666665554331 467999999998531 011123455666
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccH-HHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDP-ALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~-aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.++. ....+|+++|.+..+++ .|.+++ ..|.|+.|+..+...+++..+..
T Consensus 125 ~l~~------~~~~iIli~n~~~~~~~k~Lrsr~---~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 125 LIKK------AKQPIILTANDPYDPSLRELRNAC---LMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred HHHc------CCCCEEEeccCccccchhhHhccc---eEEEecCCCHHHHHHHHHHHHHH
Confidence 6652 22457778899888887 666533 45999999999999888887754
No 55
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.6e-14 Score=152.66 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=110.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++.+++.|...+. . | ..+.++||||||||||||+|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~-------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----K-------N-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 468899999999888766644332 2 1 23457999999999999999999998865
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++.+.-..-+.++++..... ...|++|||+|.+.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------------------- 130 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------------------- 130 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------------------
Confidence 466666543334455666554432 35799999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
......||..++.. ++..++|++|+.+..+++++.+++. .++|..++.++...+++..+.
T Consensus 131 -----------~~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~SR~~---vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 131 -----------KEAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIISRCQ---VIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred -----------HHHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhcCcE---EEEECCccHHHHHHHHHHHHH
Confidence 11345577777643 3457778888888899999999554 499999999998888777653
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.2e-14 Score=151.97 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=115.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++.+++.|.+.+..- ..++.|||+||+||||||+++++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 46899999999999888776555311 23457999999999999999999999876
Q ss_pred ----------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhh
Q 041423 271 ----------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEK 328 (500)
Q Consensus 271 ----------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~ 328 (500)
+++.++..+-..-++++.++.... ...|+||||+|.+-
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------------- 137 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------------- 137 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------------
Confidence 344554443334456676665432 35799999999852
Q ss_pred hhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 329 LDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
....+.||..|+.- ..+++||++||.+.+|.+.++++++. +.|..++.++..+.++.
T Consensus 138 ----------------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrSRCq~---f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 138 ----------------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRCLQ---FNLKQMPPGHIVSHLDA 194 (700)
T ss_pred ----------------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHHHHHh---cccCCCChHHHHHHHHH
Confidence 12456677777642 45679999999999999999995444 99999999998888887
Q ss_pred hhccc
Q 041423 409 YLNVE 413 (500)
Q Consensus 409 ~l~~~ 413 (500)
.+...
T Consensus 195 Il~~E 199 (700)
T PRK12323 195 ILGEE 199 (700)
T ss_pred HHHHc
Confidence 76543
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=4e-14 Score=153.02 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=114.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.|...+. . | ..++.|||+||+||||||+++++|+.+++
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~-------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----G-------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 368899999999988887755442 1 1 23457999999999999999999998865
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++..+-..-++++.++.... ...|+||||+|.+-
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------- 132 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------- 132 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------------------
Confidence 344444433333455666665432 35799999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
....+.||..|+.. ....+||++||++.+|.+.+++ |. .++.|..++.++....++..+..+
T Consensus 133 -----------~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 133 -----------NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred -----------HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 12456677777653 3467899999999999999999 44 459999999999988888877543
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.5e-14 Score=143.02 Aligned_cols=196 Identities=23% Similarity=0.311 Sum_probs=124.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
.|.++++++|++.+..+- .-|...+.. | .-.+++|||||||||||+|+.||+.++.+|..++... ..-.
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v~~-------~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAVEA-------G--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHHhc-------C--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 488999999987654321 111111111 1 1236899999999999999999999999999887643 3556
Q ss_pred HHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 285 ELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 285 ~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
+++.++..+. .+.|||+|||+.+-. .-...||-.++
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------------------------------~QQD~lLp~vE-- 129 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNK------------------------------------AQQDALLPHVE-- 129 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------------------------------hhhhhhhhhhc--
Confidence 7888887662 479999999998521 11122444443
Q ss_pred hhccCCCeEEEE-Ec-CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 359 WSACGGERLIVF-TT-NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 359 ~~~~~~~~ivI~-TT-N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
.+.+++|+ || |.--.|.+||+++.|+ +++...+.++..+++++-+......+-.. ...+ +.+..
T Consensus 130 ----~G~iilIGATTENPsF~ln~ALlSR~~v---f~lk~L~~~di~~~l~ra~~~~~rgl~~~------~~~i-~~~a~ 195 (436)
T COG2256 130 ----NGTIILIGATTENPSFELNPALLSRARV---FELKPLSSEDIKKLLKRALLDEERGLGGQ------IIVL-DEEAL 195 (436)
T ss_pred ----CCeEEEEeccCCCCCeeecHHHhhhhhe---eeeecCCHHHHHHHHHHHHhhhhcCCCcc------cccC-CHHHH
Confidence 23466666 44 4445899999998888 99999999999999888442221111000 0012 23333
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhHH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGKE 464 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 464 (500)
+.+... ...|.+.++..+-.+....+.
T Consensus 196 ~~l~~~-s~GD~R~aLN~LE~~~~~~~~ 222 (436)
T COG2256 196 DYLVRL-SNGDARRALNLLELAALSAEP 222 (436)
T ss_pred HHHHHh-cCchHHHHHHHHHHHHHhcCC
Confidence 444432 345777777766555554433
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.2e-14 Score=150.71 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=114.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.|...+. .| ..+..|||+|||||||||+|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 358899999999998887765543 12 23468999999999999999999999865
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++.++-..-..++.++.... ...|++|||+|.+-
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------------------- 131 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------------------- 131 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------------------
Confidence 455565554445566777765542 35799999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. ++...+|++|+.+..+.+.+++++ .++.|..++.++....++..+..
T Consensus 132 -----------~~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlSRC---q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 132 -----------THSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVISRC---LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred -----------HHHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHHhh---heeeccCCCHHHHHHHHHHHHHH
Confidence 12455677777643 345788888899999999999844 34999999999888888777654
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.7e-14 Score=146.09 Aligned_cols=153 Identities=16% Similarity=0.311 Sum_probs=109.9
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++.+.+.|...+. . | ..+..|||+|||||||||+|+++|+.++..
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 468999999999988887655443 1 1 133469999999999999999999998762
Q ss_pred ------------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 272 ------------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 272 ------------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
++.++...-...+.++.+..... ...|++|||+|.+-
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------------- 134 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------------- 134 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------------------
Confidence 44444432223345555543332 35699999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..++. ....+++|++|+.+..|.+++++ |. .++.|..++.++....++..+.
T Consensus 135 -----------~~A~NALLKtLEE----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 135 -----------DQSFNALLKTLEE----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred -----------HHHHHHHHHHhhc----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHH
Confidence 1245667777754 23568899999999999999999 55 3489999998888777777654
No 61
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.56 E-value=6.9e-14 Score=130.81 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=140.2
Q ss_pred CceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEE
Q 041423 197 MWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVY 273 (500)
Q Consensus 197 ~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~ 273 (500)
....++-.+|..+.+|+|.+.+|+.+++....|+.+ .+..++||+|..|||||||++|+-+++ +..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G---------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG---------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC---------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 344667778889999999999999999999999986 245689999999999999999999887 66688
Q ss_pred EEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 274 DLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 274 ~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
.|+-.++.+-..|...+...+.+.|||.||+-. .........|-.
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF-----------------------------------e~gd~~yK~LKs 162 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSF-----------------------------------EEGDDAYKALKS 162 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC-----------------------------------CCCchHHHHHHH
Confidence 888888888888999999999999999999832 222345666778
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccH----------------------HHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDP----------------------ALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~----------------------aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.+||--...+.+++|.+|+|+...|.. .|-. ||...+.|..|+.++..+|+..|..
T Consensus 163 ~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSD--RFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 163 ALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSD--RFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred HhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhh--hcceeecccCCCHHHHHHHHHHHHH
Confidence 889877777889999999997654442 2333 9999999999999999999999874
Q ss_pred c
Q 041423 412 V 412 (500)
Q Consensus 412 ~ 412 (500)
.
T Consensus 241 ~ 241 (287)
T COG2607 241 H 241 (287)
T ss_pred H
Confidence 3
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.4e-13 Score=141.89 Aligned_cols=153 Identities=20% Similarity=0.299 Sum_probs=108.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------------- 270 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------- 270 (500)
.|.+|++++|++..++.+...+. .| ..++.|||+||||||||++|+++|..++.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~-----------~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLS-----------LG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 57899999999988887654432 11 23457999999999999999999998853
Q ss_pred ----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 271 ----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 271 ----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
+++.++..+-..-..++.++.... ...|++|||+|.+-
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------------------- 132 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------------------- 132 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------------------
Confidence 344444332223345666654431 34699999999741
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. +....+|++|+.++.+.+++..++ ..++|+.++.++....++..+..
T Consensus 133 ----------~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc---~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 133 ----------RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILSRC---LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred ----------HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHhhc---eEEeCCCCCHHHHHHHHHHHHHH
Confidence 11334567666643 345678888888999999998844 45999999999998888776644
No 63
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=2.8e-13 Score=137.20 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=112.1
Q ss_pred CceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 197 MWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 197 ~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.|. .-..|.+|++++|+++.++.+...+. .| ..+..+||+||||+|||++++++|+.++.+++.++
T Consensus 10 ~w~--~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 10 MWE--QKYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred cce--eccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 454 34568999999999998887766553 12 23446777999999999999999999999999998
Q ss_pred ecccCChHHHHHHH----Hhh---cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 277 LTAVKDNTELRKLL----IET---TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 277 l~~~~~~~~l~~l~----~~~---~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
++. .....++..+ ... ..+.+|+|||+|.+.. . ....
T Consensus 76 ~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------------------------~---~~~~ 119 (316)
T PHA02544 76 GSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------------------------A---DAQR 119 (316)
T ss_pred cCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------------------------H---HHHH
Confidence 887 2233333322 222 3578999999997410 0 0122
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.|...++.. ..+..+|+|||.+..+++++.+ |+. .+.++.|+.+++..+++.++
T Consensus 120 ~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 120 HLRSFMEAY----SKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHHHHhc----CCCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 344455543 2446888999999999999999 553 58999999999888776654
No 64
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=2.5e-13 Score=151.69 Aligned_cols=159 Identities=25% Similarity=0.260 Sum_probs=113.3
Q ss_pred ccc-ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH
Q 041423 209 FET-MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR 287 (500)
Q Consensus 209 ~~~-l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~ 287 (500)
++. ..|.+.+|+.|++.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+...++
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 444 788999999998776643321 112233589999999999999999999999999999988876554442
Q ss_pred ---------------HHHHhhc-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 288 ---------------KLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 288 ---------------~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
..+.... .+.|++|||||.+... ......+.|
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~--------------------------------~~g~~~~aL 440 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD--------------------------------MRGDPASAL 440 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc--------------------------------cCCCHHHHH
Confidence 2222322 4568999999985310 011134556
Q ss_pred HHHHhhh-----h------hccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 352 LNFIDGL-----W------SACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 352 L~~ldg~-----~------~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
+..+|-- . ...-.++++|+|+|.. .|+|||++ ||+ .|.++.++.++..+|+++||
T Consensus 441 levld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 441 LEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhh
Confidence 6666520 0 0011457899999988 59999999 885 59999999999999999998
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.55 E-value=1.1e-13 Score=140.49 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=105.8
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-----DVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~l 277 (500)
-..|.+|++++|++++.+.|... +.. +. . .++|||||||||||++|.++|+++.. .+..++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~----~~~-------~~-~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVI----ARD-------GN-M-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHH----Hhc-------CC-C-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 45799999999998877766432 221 11 1 25999999999999999999999732 3455555
Q ss_pred cccCChHHHHHHHH---hh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 278 TAVKDNTELRKLLI---ET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 278 ~~~~~~~~l~~l~~---~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
++......++..+. .. ....|++|||+|.+.. ...
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------------------------~aq 116 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------------------------GAQ 116 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------------------------HHH
Confidence 54434344544432 21 2357999999998521 123
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
..|+..++.. +....+|++||....+.++|.+++.+ ++|+.|+.++....++..+..
T Consensus 117 ~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~SRc~~---i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 117 QALRRTMEIY----SNTTRFALACNTSSKIIEPIQSRCAI---VRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred HHHHHHHhcc----cCCceEEEEeCCccccchhHHHhhhc---ccCCCCCHHHHHHHHHHHHHH
Confidence 4455666543 23356888999999999999995544 999999999988887776643
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=144.13 Aligned_cols=153 Identities=15% Similarity=0.244 Sum_probs=114.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN--------------- 269 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--------------- 269 (500)
.|.+|++|+|++.+++.+...+. .| ..+++|||+||||+||||+|+++|..++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~-----------~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFT-----------LN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 58899999999988776643322 12 2356899999999999999999998653
Q ss_pred ---------CCEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 270 ---------YDVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 270 ---------~~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
.+++.++.++-..-++++.++.... ..-|++|||+|.+-
T Consensus 76 C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------------------- 129 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------------------- 129 (491)
T ss_pred HHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------------------
Confidence 3566777665555667777765542 45799999998752
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. +...++|++|+.+++|.+++++++.. ++|..++.++....+...+..
T Consensus 130 ----------~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~SRc~~---~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 130 ----------NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIISRCQR---FDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred ----------HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHHhhee---eecccccHHHHHHHHHHHHHH
Confidence 12456777777753 35578888899999999999995555 999999999888888776653
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=1.6e-13 Score=153.57 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=113.5
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..++.++|.++....+++.+.. ..+.+++|+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 466789999988877766554421 134589999999999999999999987 778888
Q ss_pred EeecccCC--------hHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcc
Q 041423 275 LELTAVKD--------NTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSS 344 (500)
Q Consensus 275 l~l~~~~~--------~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
++++.+.. ...++++|..+. .++||||||||.++.. +.. .++
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~---g~~-----------------------~~~-- 295 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGA---GAT-----------------------SGG-- 295 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhcc---CCC-----------------------CCc--
Confidence 88776532 357888888764 5899999999997531 100 000
Q ss_pred hhcH-hHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 345 KVTL-SGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 345 ~~~l-s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.... +-|+..+ ..+++.+|++||..+ .+|+||.| ||. .|+++.|+.+++..|++....
T Consensus 296 ~~~~~~~L~~~l------~~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 296 SMDASNLLKPAL------SSGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred cHHHHHHHHHHH------hCCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 0111 2233332 235688899888643 57999999 996 699999999999999997654
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2e-13 Score=145.91 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=112.6
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++.+++.|...+.. + ..+..|||+|||||||||+|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 3589999999999988877655531 1 234579999999999999999999988652
Q ss_pred ------------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 272 ------------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 272 ------------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
++.++..+-..-++++.++.... ...|++|||+|.+.
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------------------- 132 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------------------- 132 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------------------
Confidence 56666554445556777665432 34699999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++.+++|++|+.+.++.+.+++++.. ++|..++.++....++..+.
T Consensus 133 -----------~~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~SRc~~---~~f~~l~~~~i~~~l~~il~ 192 (509)
T PRK14958 133 -----------GHSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLSRCLQ---FHLAQLPPLQIAAHCQHLLK 192 (509)
T ss_pred -----------HHHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHHHhhh---hhcCCCCHHHHHHHHHHHHH
Confidence 12356677777653 34578888889999999999985554 89999888877766666554
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.6e-13 Score=143.13 Aligned_cols=154 Identities=19% Similarity=0.334 Sum_probs=112.6
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++...+.+...+. . | ..+.+|||+|||||||||+|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~---~--------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTIL---N--------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH---c--------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 578999999999988876644332 1 1 23458999999999999999999998864
Q ss_pred ---------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhh
Q 041423 271 ---------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKL 329 (500)
Q Consensus 271 ---------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~ 329 (500)
+++.++..+-..-.+++.++..+. ...|++|||+|.+.
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------------- 141 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------------- 141 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC---------------------
Confidence 334444433334566777765542 45799999999752
Q ss_pred hhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 330 DKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
....+.||..++.. +...++|++|+.++.+.+++.+++ ..++|..++.++...+++..
T Consensus 142 ---------------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc---~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 142 ---------------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIISRC---QRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred ---------------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcc---eEEEccCCCHHHHHHHHHHH
Confidence 12355677776642 455788888899999999999844 34999999999998888877
Q ss_pred hcc
Q 041423 410 LNV 412 (500)
Q Consensus 410 l~~ 412 (500)
+..
T Consensus 200 ~~~ 202 (507)
T PRK06645 200 TKQ 202 (507)
T ss_pred HHH
Confidence 753
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.52 E-value=7.2e-13 Score=136.30 Aligned_cols=155 Identities=19% Similarity=0.355 Sum_probs=111.2
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++..++.+.+.+.. | ..++.||||||||+|||++++++|..+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4678999999999998887665531 1 23457999999999999999999998742
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++.........++.++.... .+-|++|||+|.+.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------------- 130 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------------- 130 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------------------
Confidence 244444332233445666665542 34699999998741
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
....+.|+..++.. +...++|++||+++.+.+++.+ |+ ..++|+.|+.++...+++.++...
T Consensus 131 -----------~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 131 -----------KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred -----------HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 11345567666542 3457888889999999999998 55 359999999999998888876543
No 71
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=9e-13 Score=147.28 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=112.0
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC------------
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------ 270 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 270 (500)
-..|.+|++|+|++.+++.|...+.. | ..++.|||+||+|||||+++++||+.|++
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 34688999999999888877655431 1 23457999999999999999999999864
Q ss_pred --------------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhh
Q 041423 271 --------------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLD 330 (500)
Q Consensus 271 --------------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (500)
+++.++..+...-++++.+.... ...-|+||||+|.+-
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------- 133 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------- 133 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------------
Confidence 23444433323344555554322 245799999999852
Q ss_pred hhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 331 KEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 331 ~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
....+.||..|+.. ....+||++|+.+++|-++|+.++.. ++|..++.++...+++..+
T Consensus 134 --------------~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc~~---v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 134 --------------PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRTHH---YPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred --------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhheeE---EEeeCCCHHHHHHHHHHHH
Confidence 12456788888764 35678888899999999999996555 9999999999888888776
Q ss_pred c
Q 041423 411 N 411 (500)
Q Consensus 411 ~ 411 (500)
.
T Consensus 193 ~ 193 (824)
T PRK07764 193 A 193 (824)
T ss_pred H
Confidence 4
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6.4e-13 Score=144.10 Aligned_cols=153 Identities=18% Similarity=0.296 Sum_probs=112.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------------- 270 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------- 270 (500)
.|.+|++|+|++..++.|...+.. | ..+..|||+||+|+||||+|+++|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 689999999999888877554431 1 23457999999999999999999998866
Q ss_pred ----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 271 ----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 271 ----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
+++.++..+-..-++++.+..... ..-|++|||+|.+-
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-------------------------- 132 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-------------------------- 132 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------------------
Confidence 344444433223345666654432 35699999999852
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..|+.- ++.+++|++|+.+..|.+.++. |. .+++|..++.++....++..+..
T Consensus 133 ----------~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 133 ----------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred ----------HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 23567788887753 4557888889999999999999 44 55999999999998888877643
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.51 E-value=5.9e-13 Score=139.70 Aligned_cols=149 Identities=23% Similarity=0.345 Sum_probs=106.1
Q ss_pred cCCCccccccCChhhHHH---HHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 204 EHPATFETMALEPEKKLE---IIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~---l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
-.|.+|++++|++..... +...+ .. + ...+++|+||||||||++|+++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i----~~-------~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMI----EA-------G--RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHH----Hc-------C--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 358899999999877544 43333 22 1 12379999999999999999999999999998887643
Q ss_pred CChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 KDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.++.... .+.||||||||.+.. .....|+..
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------------------------------~~q~~LL~~ 115 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------------------------------AQQDALLPH 115 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------------------------------HHHHHHHHH
Confidence 3345665555442 578999999998521 112345555
Q ss_pred HhhhhhccCCCeEEEEEc--CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 355 IDGLWSACGGERLIVFTT--NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TT--N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
++. +.+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+.
T Consensus 116 le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 116 VED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred hhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 542 235566554 445689999999 55 4599999999999999888764
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=5.4e-13 Score=138.04 Aligned_cols=155 Identities=20% Similarity=0.258 Sum_probs=110.8
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC----------------
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD---------------- 271 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---------------- 271 (500)
.|++|+|++..++.|...+..... .+...+...+++|||+||||+|||++|+++|..+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 588999999999998877764433 2344455567799999999999999999999976442
Q ss_pred -------EEEEeeccc-CChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccC
Q 041423 272 -------VYDLELTAV-KDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKE 337 (500)
Q Consensus 272 -------i~~l~l~~~-~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (500)
++.+..... ..-.+++.++.... ...|++|||+|.+-
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------------------------- 130 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------------------------- 130 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------------------------
Confidence 333333221 23345676665542 34699999999852
Q ss_pred CCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 338 PKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 338 ~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
....+.||..|+.- +.+.++|++|++++.|.|+++++++ .+.|+.|+.++..+.+..
T Consensus 131 -------~~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrSRc~---~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 131 -------ERAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRSRCR---HVALRTPSVEAVAEVLVR 187 (394)
T ss_pred -------HHHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHhhCe---EEECCCCCHHHHHHHHHH
Confidence 11235677777643 3456778888889999999999554 599999999988777654
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.1e-13 Score=141.86 Aligned_cols=153 Identities=20% Similarity=0.362 Sum_probs=110.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.|...+.. + ..+..+||||||||||||+|+++|+.+..
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3588999999999887777554432 1 23456899999999999999999998853
Q ss_pred ----------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 271 ----------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 271 ----------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
+++.++......-..++.+.... ..+.|+||||+|.+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------------------- 129 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------------------- 129 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------------------
Confidence 25555554333344555553332 246799999998631
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
...++.|+..++.. +...++|++||.+..+.+++.++++ +++|..++.++....++..+.
T Consensus 130 ----------~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~SRc~---~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 130 ----------KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILSRTQ---HFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred ----------HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhcceE---EEEecCCCHHHHHHHHHHHHH
Confidence 12456677776643 3457888899999999999998544 499999999998888877664
No 76
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=6.3e-13 Score=143.82 Aligned_cols=153 Identities=18% Similarity=0.328 Sum_probs=113.2
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN--------------- 269 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--------------- 269 (500)
.|.+|++|+|++.+++.+...+.. | ..++.||||||+|||||++|+.+|..++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 588999999999988877665542 1 2356799999999999999999999875
Q ss_pred ---------CCEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 270 ---------YDVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 270 ---------~~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
.+++.++..+-..-+.++.+..... ..-|++|||+|.+.
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------------------- 132 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------------------- 132 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------------------
Confidence 3456666554444556676665532 35799999999852
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. +..+++|++|+.+..|.+++++ |. ..+.|..++.++....++..+..
T Consensus 133 ----------~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 133 ----------TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred ----------HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHH
Confidence 11355677777643 3557888888889999999998 44 34899999998888888776643
No 77
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.5e-13 Score=139.70 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=127.0
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC----EEEEeecccCC--h
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD----VYDLELTAVKD--N 283 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~----i~~l~l~~~~~--~ 283 (500)
.+++..+..|++..+..... +.-+.++||+||+|||||.|++++++++..+ +..++|+.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666677777665522221 2334479999999999999999999998654 44678887742 2
Q ss_pred HHHH----HHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 284 TELR----KLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 284 ~~l~----~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
+.++ .+|.+. ..|+||++||+|+++...+... + ..+.....+..+||.+-.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~----------------------~-q~~~~~~rla~flnqvi~ 533 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNEN----------------------G-QDGVVSERLAAFLNQVIK 533 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccC----------------------C-cchHHHHHHHHHHHHHHH
Confidence 3333 444443 4799999999999874111110 0 112222345555644433
Q ss_pred hhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcccc-chhHHHHHHHhh-cCCCCHHHH
Q 041423 358 LWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVET-HTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~-~~l~~~i~~l~~-~~~~spa~i 435 (500)
.....+..+.+|+|.+....|+|.|..|++|+.++.++.|...+|.+|++..+.... ...+.+++-+.. ..||.+-|+
T Consensus 534 ~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 534 IYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred HHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 333333446789999999999999999999999999999999999999999886433 222333333322 446666665
Q ss_pred H
Q 041423 436 A 436 (500)
Q Consensus 436 ~ 436 (500)
.
T Consensus 614 ~ 614 (952)
T KOG0735|consen 614 V 614 (952)
T ss_pred H
Confidence 4
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.8e-13 Score=146.16 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=109.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++..++.|.+.+. . | ..+..|||+|||||||||+|+++|+.+++.
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~-------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----h-------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 357899999999988877654332 1 1 235578999999999999999999998763
Q ss_pred ------------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 272 ------------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 272 ------------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
++.++..+...-..++.+..... ..-|+||||+|.+-
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------- 132 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------- 132 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------------------
Confidence 12222221122344555554332 35799999999851
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..|+.. ++.+++|++|+.+..|.++++.++ .++.|..++.++....++..+..
T Consensus 133 -----------~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlSRC---q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 133 -----------RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLSRC---LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred -----------HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHHhh---eEEeCCCCCHHHHHHHHHHHHHH
Confidence 23567788888753 345678888888999999999844 44999999999988888776643
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.2e-13 Score=143.93 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=110.4
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++.+++.|...+. . | ..+..|||+||+|||||++++++|+.+++
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~----~-------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT----Q-------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 358899999999888776655433 1 1 23457999999999999999999998864
Q ss_pred ----------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhh
Q 041423 271 ----------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEK 328 (500)
Q Consensus 271 ----------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~ 328 (500)
+++.++..+-..-++++.++.... ..-|++|||+|.+.
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------------- 137 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------------- 137 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------------
Confidence 234444333233456777765532 24699999999852
Q ss_pred hhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 329 LDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
....+.||..++.. ++..++|++|+.+.++.+.++++|.. ++|..++.++....++.
T Consensus 138 ----------------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc~~---~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 138 ----------------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRCLQ---FNLRPMAPETVLEHLTQ 194 (618)
T ss_pred ----------------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhcee---eecCCCCHHHHHHHHHH
Confidence 12355677666542 34578888888899999999996555 99999999988888877
Q ss_pred hhcc
Q 041423 409 YLNV 412 (500)
Q Consensus 409 ~l~~ 412 (500)
.+..
T Consensus 195 i~~~ 198 (618)
T PRK14951 195 VLAA 198 (618)
T ss_pred HHHH
Confidence 6643
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.6e-13 Score=144.10 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=113.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++.+++.|...+.. ...+++|||+||||||||++|+++|+.+++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 3688999999999988877665541 1245689999999999999999999987543
Q ss_pred ------------EEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 272 ------------VYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 272 ------------i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
++.++..+-...+.++.++... ....|+||||+|.+-
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------- 132 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------- 132 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------------------
Confidence 3334433333445677776543 245799999998741
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
....+.||..|+.. .+.+++|++||.+..+.+.++. |+ ..+.|..++.++....++..+...
T Consensus 133 -----------~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 133 -----------KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred -----------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 12356677777753 3457888899999999999987 66 558888999999888888777643
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.1e-13 Score=141.49 Aligned_cols=153 Identities=16% Similarity=0.311 Sum_probs=110.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++..++.+...+. . | ..+++|||+||||+|||++|+++|..+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~----~-------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL----N-------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 468899999999988877755432 1 1 23468999999999999999999998742
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++..+...-+.++.+..... ...|++|||+|.+-
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------------------- 132 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------------------- 132 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------------------
Confidence 445555433233445666554332 35689999999741
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++..++|++|+.+..|.+++++++.. ++|+.++.++....++..+.
T Consensus 133 -----------~~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRcq~---ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 133 -----------TSAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIISRCQR---YNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred -----------HHHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHhhhhh---cccCCCCHHHHHHHHHHHHH
Confidence 01245677777753 34578888899999999999995544 99999999988877777653
No 82
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.8e-13 Score=142.35 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=124.0
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC------ChHHHHHHHHhhc--CCeEEEecchhchhccc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK------DNTELRKLLIETT--SKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~------~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~ 311 (500)
++.....+||+|+||||||++++++|.++|.+++.++|.++. +...+...|..+. +|+|||+-++|.+.
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~--- 503 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLG--- 503 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceee---
Confidence 334445699999999999999999999999999999998873 4556777777664 79999999999863
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH--hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeee
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI--DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMD 389 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l--dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d 389 (500)
..+ .++.....++.+-..+ |... ......|||+||+..+.+++.+.+ .|-
T Consensus 504 id~-------------------------dgged~rl~~~i~~~ls~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~ 555 (953)
T KOG0736|consen 504 IDQ-------------------------DGGEDARLLKVIRHLLSNEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFL 555 (953)
T ss_pred ecC-------------------------CCchhHHHHHHHHHHHhccccc-CCCCceEEEEeccccccCCHHHHH--hhh
Confidence 110 1122222222222222 2222 234568999999999999999988 788
Q ss_pred EEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHHHHHhCC
Q 041423 390 KHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADVAENLMP 441 (500)
Q Consensus 390 ~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~~ 441 (500)
..|.++.|+.++|.+|++.|+...........+.++. ..+|+++++..+...
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcC
Confidence 8999999999999999999987544332223344444 558999998766653
No 83
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=1.2e-12 Score=129.01 Aligned_cols=146 Identities=22% Similarity=0.241 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH---------
Q 041423 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR--------- 287 (500)
Q Consensus 217 ~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~--------- 287 (500)
...+++++.+..++.. ++.+||+||||||||++|+++|..++.+++.++++.-.+..++.
T Consensus 5 ~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~ 73 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRK 73 (262)
T ss_pred HHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchh
Confidence 3455666666666654 34799999999999999999999999999999887643322221
Q ss_pred ------------------------HHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 288 ------------------------KLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 288 ------------------------~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
.++.....+.+|+|||||.+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~----------------------------------- 118 (262)
T TIGR02640 74 KVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSK----------------------------------- 118 (262)
T ss_pred hHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCC-----------------------------------
Confidence 112223356899999999741
Q ss_pred chhcHhHHHHHHhhhh----h--------ccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHH
Q 041423 344 SKVTLSGLLNFIDGLW----S--------ACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLA 406 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~----~--------~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~ 406 (500)
..+.+.|+..++.-. . ....+..||+|+|... .++++|++ || ..+.+++|+.++-.+|+
T Consensus 119 -~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il 194 (262)
T TIGR02640 119 -PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAIL 194 (262)
T ss_pred -HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHH
Confidence 113444555554210 0 0112456899999763 57899999 87 77999999999999999
Q ss_pred HHhhcc
Q 041423 407 KNYLNV 412 (500)
Q Consensus 407 ~~~l~~ 412 (500)
+...+.
T Consensus 195 ~~~~~~ 200 (262)
T TIGR02640 195 RAKTDV 200 (262)
T ss_pred HHhhCC
Confidence 887654
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=140.36 Aligned_cols=152 Identities=19% Similarity=0.269 Sum_probs=108.4
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------------- 270 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------- 270 (500)
.|.+|++++|++..++.+...+.. | ..+..|||+||||||||++|+++|+.++.
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 588999999999988877654431 1 23457999999999999999999998864
Q ss_pred ----------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 271 ----------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 271 ----------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
+++.++......-.+++.++... ...-|++|||+|.+-
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------------------- 132 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------------------- 132 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------------------
Confidence 44445443322334455554332 246799999999842
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++..++|++|+.+..+.++++.++.. ++|..++.++....++..+.
T Consensus 133 ----------~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~SRc~~---~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 133 ----------KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILSRCIQ---LHLKHISQADIKDQLKIILA 192 (546)
T ss_pred ----------HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHHheee---EEeCCCCHHHHHHHHHHHHH
Confidence 12455677777753 34567888888889999899986555 99999999888777776554
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.4e-12 Score=134.88 Aligned_cols=153 Identities=16% Similarity=0.336 Sum_probs=109.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC------------C
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------D 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------~ 271 (500)
..|.+|++++|++..++.+...+.. | ..+++||||||||+|||++++++|+.+.. +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4688999999999888777655532 1 23468999999999999999999998754 2
Q ss_pred EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcch
Q 041423 272 VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSK 345 (500)
Q Consensus 272 i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (500)
++.++.........++.++.... .+.|++|||+|.+. .
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------------------------------~ 122 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------------------------------S 122 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------------------------------H
Confidence 23333222233456777765432 35799999998742 1
Q ss_pred hcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 346 VTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 346 ~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
..++.|+..++.. +...++|++|+.+..+.+++.+++++ ++++.++.++...++...+.
T Consensus 123 ~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~sr~~~---v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 123 AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILSRCQI---FDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHhccee---EecCCccHHHHHHHHHHHHH
Confidence 1345666666542 34467888888889999999986655 99999999888877776554
No 86
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=141.24 Aligned_cols=154 Identities=21% Similarity=0.324 Sum_probs=110.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.|...+. . | ..+..|||+||+||||||+|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 358899999999988887655443 1 1 23457999999999999999999998763
Q ss_pred -------------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhh
Q 041423 271 -------------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDK 331 (500)
Q Consensus 271 -------------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~ 331 (500)
+++.++.++...-+.++.+.... ...-|++|||+|.+-
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt----------------------- 131 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT----------------------- 131 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------------------
Confidence 24444443333344555554332 245799999999852
Q ss_pred hhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 332 EISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 332 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. +...++|++|+.+++|.++++.++. +++|..++.++....+..++.
T Consensus 132 -------------~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc~---~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 132 -------------TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRTH---HYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred -------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhce---EEEeeCCCHHHHHHHHHHHHH
Confidence 12456677777753 4568889988999999999998544 499999999888888777665
Q ss_pred c
Q 041423 412 V 412 (500)
Q Consensus 412 ~ 412 (500)
.
T Consensus 192 ~ 192 (584)
T PRK14952 192 Q 192 (584)
T ss_pred H
Confidence 4
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8e-13 Score=142.05 Aligned_cols=152 Identities=16% Similarity=0.269 Sum_probs=110.9
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------------- 270 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------- 270 (500)
.|.+|++|+|++.+++.+...+.. ...+..|||+||||+||||+|+++|..+++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 588999999999988877654431 123457999999999999999999998865
Q ss_pred ----------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 271 ----------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 271 ----------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
+++.++...-..-+.++.++.... ...|++|||+|.+-
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------------------- 132 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------------------- 132 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------------------
Confidence 244444433334456676665442 35699999999742
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..++.. ++..++|++|+++..+.+.+++++.. ++|..++.++....+...+.
T Consensus 133 ----------~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~SRc~~---~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 133 ----------KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRCLQ---FNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred ----------HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHHHHHH---HhcCCCCHHHHHHHHHHHHH
Confidence 12356677777653 35578888888899999889885555 99999999988877777664
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.8e-12 Score=141.43 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=109.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++.+++.|...+.. | ..++.||||||||+|||++|+++|..+.+.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 4688999999999988877665541 1 245689999999999999999999987542
Q ss_pred ---------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhcc
Q 041423 272 ---------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRK 336 (500)
Q Consensus 272 ---------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 336 (500)
++.++..+-.....++.+..... ...|++|||+|.+-
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT---------------------------- 131 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS---------------------------- 131 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------------------------
Confidence 22232222122344666554432 45799999999842
Q ss_pred CCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 337 EPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 337 ~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++..++|++|+.++.|.++++++ . .++.|..++.++....+...+.
T Consensus 132 --------~~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~SR--c-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 132 --------KSAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILSR--V-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred --------HHHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHhh--c-eeEEccCCCHHHHHHHHHHHHH
Confidence 12456677777753 35578888889999999999994 4 3599999999988877776543
No 89
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2e-12 Score=139.18 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=108.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++.+++.|...+. . | .....|||+||||||||++|+++|+.+...
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~----~-------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQ----E-------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 468899999999988776655443 1 1 223589999999999999999999988652
Q ss_pred ------------EEEEeecccCChHHHHHH---HHhhc---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 272 ------------VYDLELTAVKDNTELRKL---LIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 272 ------------i~~l~l~~~~~~~~l~~l---~~~~~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
++.++...-..-+.++.+ +...+ ...||||||+|.+-
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------- 132 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------- 132 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------------------
Confidence 444543322223344443 32222 45799999999852
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..|+.. ....++|++||.+..+.+.|++ |+ .+|+|+.++.++...+++..+..
T Consensus 133 -----------~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 133 -----------REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred -----------HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHH
Confidence 12346677777653 2457889999999999999988 44 34899999999988887776543
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.8e-12 Score=143.95 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=106.6
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEee
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLEL 277 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l 277 (500)
.++.++|.++..+++++.+.. ..+.++||+||||||||++++++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 367788888777777664432 124578999999999999999999864 555666655
Q ss_pred cccC--------ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 278 TAVK--------DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 278 ~~~~--------~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
..+. ....++.++... ..++||||||||.++...+. ......
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~----------------------------~~g~~d 302 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA----------------------------SGGQVD 302 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----------------------------CCcHHH
Confidence 4432 234466666554 45789999999997631110 001111
Q ss_pred HhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 348 LSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 348 ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
+.|.+..+. ..+++.+|++||..+ .+|+||.| ||+ .|.++.|+.+++..|++.+..
T Consensus 303 ---~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 303 ---AANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred ---HHHHHHHHH--hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 223333322 235688999998865 47999999 996 699999999999999987654
No 91
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.7e-12 Score=141.16 Aligned_cols=152 Identities=16% Similarity=0.286 Sum_probs=110.6
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------- 271 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------- 271 (500)
.|.+|++|+|++.+++.|...+.. | ..++.||||||||+|||++++++|+.++..
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 588999999999888877665531 1 245689999999999999999999998642
Q ss_pred -----------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 272 -----------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 272 -----------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
++.++..+...-++++.+..... ..-|++|||+|.+-
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------------------- 132 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------------------- 132 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------------------
Confidence 34444333233345666654432 34699999999852
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++..++|++||.+++|.+++++++.. ++|..++.++....+...+.
T Consensus 133 ----------~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~SRc~~---~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 133 ----------TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILSRCQR---FDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred ----------HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHHhhhh---hhcCCCCHHHHHHHHHHHHH
Confidence 12456788888753 35678889999999999999985544 99999998888777766554
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=7.9e-13 Score=149.27 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=109.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..++.++|.+.....+++.+.. ..+.+.+|+||||||||++++.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 366899999998876555544321 224589999999999999999999976 355777
Q ss_pred EeecccC--------ChHHHHHHHHhhc---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 275 LELTAVK--------DNTELRKLLIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 275 l~l~~~~--------~~~~l~~l~~~~~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
++++.+. ....++.++.... .++||||||||.+....+. .+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---------------------------~~- 300 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---------------------------AG- 300 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---------------------------cc-
Confidence 7776642 1257788887653 5799999999997532110 00
Q ss_pred chhcH-hHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 344 SKVTL-SGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 344 ~~~~l-s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.... +-|+..+ ..++..+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+..
T Consensus 301 -~~d~~n~Lkp~l------~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 301 -QGDAANLLKPAL------ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred -cccHHHHhhHHh------hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 0111 1122222 246688999888654 48999999 885 699999999999999765553
No 93
>PRK06893 DNA replication initiation factor; Validated
Probab=99.44 E-value=2.6e-12 Score=124.06 Aligned_cols=162 Identities=13% Similarity=0.208 Sum_probs=102.5
Q ss_pred ecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 201 IVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
+....+.+|++.++.+.. .....+..- +.. ...+.++||||||||||+|+.|+|+++ +.....+++
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~~------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRKN------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHHH------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 345667799999866532 122222111 111 122357999999999999999999986 445555555
Q ss_pred cccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 278 TAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
.... ....+.+....+..+|+||||+.+. |. . ..-..|++.++.
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~---~~----------------------------~---~~~~~l~~l~n~ 119 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVI---GN----------------------------E---EWELAIFDLFNR 119 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhc---CC----------------------------h---HHHHHHHHHHHH
Confidence 4321 1122444555567899999999852 11 0 111235555665
Q ss_pred hhhccCCCeEEEEEcC-CcCccc---HHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 358 LWSACGGERLIVFTTN-YVEKLD---PALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN-~~~~lD---~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
... .+..++|+|+| .|..++ |.|.++.+....+.++.|+.+.+.+|++....
T Consensus 120 ~~~--~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 120 IKE--QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred HHH--cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 533 23345555555 465554 89999777778899999999999999887763
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=4.1e-13 Score=151.98 Aligned_cols=155 Identities=20% Similarity=0.295 Sum_probs=111.4
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEE
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDL 275 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l 275 (500)
|..++.++|.+.....+++.+.. ..+.+.+|+||||||||++++++|..+ +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 56789999998866666554432 123479999999999999999999987 7788888
Q ss_pred eecccC--------ChHHHHHHHHhh---cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcc
Q 041423 276 ELTAVK--------DNTELRKLLIET---TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSS 344 (500)
Q Consensus 276 ~l~~~~--------~~~~l~~l~~~~---~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
++..+. ....++.+|... ..++||||||||.+.. .++. .+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~---~~~~------------------------~~-- 291 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---AGKA------------------------DG-- 291 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc---CCCC------------------------cc--
Confidence 887652 123577787653 3589999999999752 2110 00
Q ss_pred hhcHhHHH-HHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 345 KVTLSGLL-NFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 345 ~~~ls~lL-~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
......+| ..+ ..++..+|++|+..+ .+|+||.| ||+ .|.++.|+.+++..|++....
T Consensus 292 ~~d~~~~lkp~l------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 292 AMDAGNMLKPAL------ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred chhHHHHhcchh------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 01112222 111 246789999998877 48999999 997 488999999999999887654
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.43 E-value=2.3e-12 Score=143.03 Aligned_cols=159 Identities=14% Similarity=0.260 Sum_probs=112.7
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
.|+|+++.++.|.+.+.....+- ...+. +...+||+||||||||++|+++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~k-p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHK-PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCC-CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 36899999988888776543320 11111 223589999999999999999999999999999998875433344443
Q ss_pred Hh------------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 291 IE------------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 291 ~~------------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
+. ....+||+|||||.+- ....+.||
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------------------------------~~v~~~LL 578 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------------------------------PDVFNLLL 578 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------------------------------HHHHHHHH
Confidence 21 1245899999999842 12556677
Q ss_pred HHHhh-hh-hccC-----CCeEEEEEcCCc-------------------------CcccHHHhcCCeeeEEEEccCCCHH
Q 041423 353 NFIDG-LW-SACG-----GERLIVFTTNYV-------------------------EKLDPALIRRGRMDKHIELSYCTFQ 400 (500)
Q Consensus 353 ~~ldg-~~-~~~~-----~~~ivI~TTN~~-------------------------~~lD~aLlr~GR~d~~I~~~~p~~~ 400 (500)
+.+|. .- ...+ .+.+||+|||.- ..+.|.|+. |+|.+|.|+..+.+
T Consensus 579 q~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~ 656 (758)
T PRK11034 579 QVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTD 656 (758)
T ss_pred HHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHH
Confidence 77762 21 1111 356899999921 125577777 99999999999999
Q ss_pred HHHHHHHHhhc
Q 041423 401 GFKVLAKNYLN 411 (500)
Q Consensus 401 ~~~~l~~~~l~ 411 (500)
+..+|+..++.
T Consensus 657 ~l~~I~~~~l~ 667 (758)
T PRK11034 657 VIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHHHH
Confidence 99999988874
No 96
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=5.8e-12 Score=133.94 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=107.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++...+.+...+.. | ..++.||||||||+|||++|+++|..+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4688999999999888877655531 1 23457999999999999999999998763
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhh---c---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIET---T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~---~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++.++-..-+.++.+.... + .+.|++|||+|.+.
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------------------- 132 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------------------- 132 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------------------
Confidence 23444443322333444443332 2 45799999999742
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. +...++|++|+.++.+.+++.+++. .+.|..++.++....+...+..
T Consensus 133 -----------~~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~SRc~---~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 133 -----------KEAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILSRCQ---RFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred -----------HHHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHHhce---EEEcCCCCHHHHHHHHHHHHHH
Confidence 11235566666643 3456788888888899999998443 4999999999988888876643
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=3.7e-12 Score=132.47 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=69.6
Q ss_pred ccc-ccCChhhHHHHHHHHHHHhhChHHHHh--hCC-CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC--
Q 041423 209 FET-MALEPEKKLEIIEDLVTFSKSRDFYAR--IGK-AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD-- 282 (500)
Q Consensus 209 ~~~-l~~~~~~k~~l~~~l~~~~~~~~~~~~--~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~-- 282 (500)
++. |+|++.+|+.+...+...+++...-.. -+. ....++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 444 799999999887666544333211100 011 23467999999999999999999999999999998877532
Q ss_pred ------hHHHHHHHHh------hcCCeEEEecchhchh
Q 041423 283 ------NTELRKLLIE------TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 283 ------~~~l~~l~~~------~~~~~Il~iDdiD~~~ 308 (500)
...+..++.. ...++||||||||.+.
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 1223333322 2368999999999974
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.5e-12 Score=133.88 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=106.9
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.+...+. . | ..+..||||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~----~-------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALR----F-------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c-------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 357899999999988876655443 1 1 24567999999999999999999998743
Q ss_pred ------------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 271 ------------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 271 ------------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
+++.++......-+.++.+.... ..+.|++|||+|.+-
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------------------ 134 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------------------ 134 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------------------
Confidence 23333322222234444433222 357899999999852
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.|+..++.. ++..++|++||.+..|.+++.+++.+ ++|..++.++....+...+.
T Consensus 135 ------------~~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc~~---v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 135 ------------KEAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILSRCQK---MHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred ------------HHHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHHhceE---EeCCCCCHHHHHHHHHHHHH
Confidence 11245677777653 34578888889999999999996555 99999999888877776543
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=2.6e-12 Score=123.59 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=101.0
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
...+.+|++.+.. ..+.+++.+..+... ..++.++|+||||||||++++++++.+ +.+++.+++..
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 4455678888732 334455555555431 234579999999999999999999987 46777888877
Q ss_pred cCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh
Q 041423 280 VKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW 359 (500)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 359 (500)
+... ...++.......+|+|||+|.+.. . ......+...++...
T Consensus 77 ~~~~--~~~~~~~~~~~~lLvIDdi~~l~~--------------------------------~--~~~~~~L~~~l~~~~ 120 (226)
T TIGR03420 77 LAQA--DPEVLEGLEQADLVCLDDVEAIAG--------------------------------Q--PEWQEALFHLYNRVR 120 (226)
T ss_pred HHHh--HHHHHhhcccCCEEEEeChhhhcC--------------------------------C--hHHHHHHHHHHHHHH
Confidence 6422 234444445567999999997421 0 001234555555543
Q ss_pred hccCCCeEEEEEcC-CcCccc---HHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 360 SACGGERLIVFTTN-YVEKLD---PALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 360 ~~~~~~~ivI~TTN-~~~~lD---~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.. + ..+|+|++ .+..++ +.|.++.....+|.++.|+.+++..+++.+.
T Consensus 121 ~~--~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 121 EA--G-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred Hc--C-CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 22 2 24555555 444432 7788733335789999999999999887765
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=5.2e-12 Score=136.96 Aligned_cols=154 Identities=16% Similarity=0.295 Sum_probs=111.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
..|.+|++|+|++..++.|...+. .| ..+.++||+||+|+|||++|+++|+.+++.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~-----------~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFE-----------TG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 468899999999988887765443 12 235589999999999999999999988643
Q ss_pred -----------------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhh
Q 041423 272 -----------------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEK 328 (500)
Q Consensus 272 -----------------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~ 328 (500)
++.++..+...-++++.++.... ..-|++|||+|.+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------------- 145 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------------- 145 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------------
Confidence 22222222233456666665442 45799999998742
Q ss_pred hhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 329 LDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
....+.||..|+.. ++..++|++|+.++++.+.++.++. .++|..++.++....++.
T Consensus 146 ----------------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~SRcq---~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 146 ----------------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLSRCQ---RFDLRRIEADVLAAHLSR 202 (598)
T ss_pred ----------------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHhhee---EEEecCCCHHHHHHHHHH
Confidence 12456777777653 3457888888888899999988544 499999999998888887
Q ss_pred hhcc
Q 041423 409 YLNV 412 (500)
Q Consensus 409 ~l~~ 412 (500)
.+..
T Consensus 203 i~~k 206 (598)
T PRK09111 203 IAAK 206 (598)
T ss_pred HHHH
Confidence 7653
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.42 E-value=4.4e-12 Score=129.39 Aligned_cols=154 Identities=17% Similarity=0.201 Sum_probs=100.9
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-----DVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~l 277 (500)
-..|.+|++++|.+..++.+...+. . +. ..+++||||||||||++|+++|+++.. ++..+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 4568899999999887777654332 1 11 126999999999999999999998843 3556666
Q ss_pred cccCC--------------------------hHHHHHHHHhh-------cCCeEEEecchhchhcccCcchhhhcccchH
Q 041423 278 TAVKD--------------------------NTELRKLLIET-------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDD 324 (500)
Q Consensus 278 ~~~~~--------------------------~~~l~~l~~~~-------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~ 324 (500)
..... ...++.+.... ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 54210 11122222111 2356999999987410
Q ss_pred HHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHH
Q 041423 325 EKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKV 404 (500)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~ 404 (500)
.....|+..++.. +....+|+||+.+..+.++|.+++. .+++..|+.++...
T Consensus 140 ---------------------~~~~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~~---~v~~~~~~~~~~~~ 191 (337)
T PRK12402 140 ---------------------DAQQALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRCL---PLFFRAPTDDELVD 191 (337)
T ss_pred ---------------------HHHHHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCce---EEEecCCCHHHHHH
Confidence 0123355555543 2234566777777788888888543 49999999999988
Q ss_pred HHHHhhcc
Q 041423 405 LAKNYLNV 412 (500)
Q Consensus 405 l~~~~l~~ 412 (500)
+++..+..
T Consensus 192 ~l~~~~~~ 199 (337)
T PRK12402 192 VLESIAEA 199 (337)
T ss_pred HHHHHHHH
Confidence 88887653
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.1e-12 Score=133.54 Aligned_cols=153 Identities=14% Similarity=0.281 Sum_probs=106.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------ 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 271 (500)
-.|.+|++|+|++.+++.|...+. . | ..+..|||+||||+||||+|+++|+.+...
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 358899999999988887655443 1 2 235579999999999999999999988652
Q ss_pred --------------------EEEEeecccCChHHHHHHHHhh---c---CCeEEEecchhchhcccCcchhhhcccchHH
Q 041423 272 --------------------VYDLELTAVKDNTELRKLLIET---T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDE 325 (500)
Q Consensus 272 --------------------i~~l~l~~~~~~~~l~~l~~~~---~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~ 325 (500)
++.++......-++++.+.... + ..-|++|||+|.+-
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------------- 140 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------------- 140 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------------
Confidence 2223222222235566655444 2 45799999998742
Q ss_pred HhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHH
Q 041423 326 KEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVL 405 (500)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l 405 (500)
....+.|+..++.. ++..++|++|+.+..+-+++.+++.+ ++|..++.++....
T Consensus 141 -------------------~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~~~---v~f~~l~~~ei~~~ 194 (397)
T PRK14955 141 -------------------IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRCQR---FNFKRIPLEEIQQQ 194 (397)
T ss_pred -------------------HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHHHH---hhcCCCCHHHHHHH
Confidence 11344566666532 34567778888888999999985554 99999998888777
Q ss_pred HHHhhc
Q 041423 406 AKNYLN 411 (500)
Q Consensus 406 ~~~~l~ 411 (500)
++..+.
T Consensus 195 l~~~~~ 200 (397)
T PRK14955 195 LQGICE 200 (397)
T ss_pred HHHHHH
Confidence 776653
No 103
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6e-12 Score=136.70 Aligned_cols=152 Identities=14% Similarity=0.281 Sum_probs=107.4
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------- 271 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------- 271 (500)
.|.+|++++|++.+++.|...+. . -..+.+|||+|||||||||+|+++|+.+.+.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~----~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLR----M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 58899999999988887654332 1 1345579999999999999999999998652
Q ss_pred -------------------EEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHH
Q 041423 272 -------------------VYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEK 326 (500)
Q Consensus 272 -------------------i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~ 326 (500)
+..++......-++++.+.... ..+-|++|||+|.+-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------------
Confidence 2222222222235666665444 245799999998742
Q ss_pred hhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHH
Q 041423 327 EKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLA 406 (500)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~ 406 (500)
....+.||..|+.. ++..++|++|+.+..|-+++.++|.. ++|..++.++....+
T Consensus 141 ------------------~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc~~---vef~~l~~~ei~~~L 195 (620)
T PRK14954 141 ------------------TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRCQR---FNFKRIPLDEIQSQL 195 (620)
T ss_pred ------------------HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhceE---EecCCCCHHHHHHHH
Confidence 11245677777653 34467788888889999999997766 999999998887777
Q ss_pred HHhhc
Q 041423 407 KNYLN 411 (500)
Q Consensus 407 ~~~l~ 411 (500)
...+.
T Consensus 196 ~~i~~ 200 (620)
T PRK14954 196 QMICR 200 (620)
T ss_pred HHHHH
Confidence 66553
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.41 E-value=1.2e-12 Score=126.82 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=104.8
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------EEEE
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------VYDL 275 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------i~~l 275 (500)
.-..|.+|+++++++.+.+.+...+.. + .-..|||||||||||||.|.++|..++.+ +..+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~--~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR--R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh--c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 355789999999999999888776653 1 12379999999999999999999998763 2222
Q ss_pred eeccc----------CChHHHHHHHH-hh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCC
Q 041423 276 ELTAV----------KDNTELRKLLI-ET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKE 340 (500)
Q Consensus 276 ~l~~~----------~~~~~l~~l~~-~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (500)
+.+.- .+.+.+..... .. +..-|++|||.|.+.
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------------------------- 142 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------------------------- 142 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------------------------
Confidence 33322 11222221111 00 123699999999852
Q ss_pred CCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 341 ~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.-..+.|...||.. .....+|+.||+++.|.+.+.. |. .++.|+....+.....++....
T Consensus 143 ----sdaq~aLrr~mE~~----s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 143 ----SDAQAALRRTMEDF----SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred ----HHHHHHHHHHHhcc----ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHH
Confidence 12456788888874 2447899999999999998988 66 3477777776655555555544
No 105
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=8.1e-12 Score=133.02 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=111.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++.+++.+...+. . | ..++.||||||||+|||++|+++|+.+..
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~----~-------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALD----N-------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c-------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 358899999999999887766553 1 1 24567999999999999999999998732
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhh---c---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIET---T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~---~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++..+-..-..++.+.... + ..-|++|||+|.+-
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------------- 130 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------------- 130 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------------------
Confidence 34444433222345677766542 1 34699999998742
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
....+.||..++.. +....+|++|+.+..|.++++.++. +++|..++.++....++..+..
T Consensus 131 -----------~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc~---~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 131 -----------KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILSRTQ---HFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred -----------HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHhhce---eEEcCCCCHHHHHHHHHHHHHH
Confidence 12456677777754 3446788888888999999999544 4999999998888877766653
No 106
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=1.8e-11 Score=126.40 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=104.1
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---------CCEEEEeeccc
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---------YDVYDLELTAV 280 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~l~~~ 280 (500)
+.+++.++..++|...+...+.+ ..+.+++|+||||||||++++++++.+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 57888888888888777665542 1234799999999999999999998763 45677787654
Q ss_pred CChHHH--------------------------HHHHHh---hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhh
Q 041423 281 KDNTEL--------------------------RKLLIE---TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDK 331 (500)
Q Consensus 281 ~~~~~l--------------------------~~l~~~---~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~ 331 (500)
.+...+ ..++.. ...+.||+|||+|.+.. .
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~------------------ 144 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---D------------------ 144 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---C------------------
Confidence 332111 112222 23467999999998641 0
Q ss_pred hhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC---cccHHHhcCCeee-EEEEccCCCHHHHHHHHH
Q 041423 332 EISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE---KLDPALIRRGRMD-KHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 332 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~---~lD~aLlr~GR~d-~~I~~~~p~~~~~~~l~~ 407 (500)
....+..|+...+ .....+..+.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..++++
T Consensus 145 ------------~~~~L~~l~~~~~-~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~ 209 (365)
T TIGR02928 145 ------------DDDLLYQLSRARS-NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILE 209 (365)
T ss_pred ------------CcHHHHhHhcccc-ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHH
Confidence 0112233332211 1111224578888998875 58888877 553 679999999999999999
Q ss_pred Hhhc
Q 041423 408 NYLN 411 (500)
Q Consensus 408 ~~l~ 411 (500)
..+.
T Consensus 210 ~r~~ 213 (365)
T TIGR02928 210 NRAE 213 (365)
T ss_pred HHHH
Confidence 8874
No 107
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.7e-12 Score=135.01 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=109.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.+...+.. | ..++.||||||||+|||++|+++|+.++.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 3688999999999998887665541 1 23457999999999999999999998864
Q ss_pred -----------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 271 -----------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 271 -----------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.++...-..-+.++.+.... ...-|++|||+|.+-
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------- 132 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------- 132 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------------------
Confidence 23333322212334566655332 245799999999741
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
....+.||..++.. +...++|++|+.+..|.++|.+++.. ++|..++.++....++..+
T Consensus 133 -----------~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~SRc~~---~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 133 -----------NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKSRCQH---FNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred -----------HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHHhceE---EEecCCCHHHHHHHHHHHH
Confidence 12456677777642 45678888888899999999995444 8999999998888777665
No 108
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=1.1e-11 Score=128.38 Aligned_cols=178 Identities=24% Similarity=0.288 Sum_probs=109.7
Q ss_pred ccc-ccCChhhHHHHHHHHHHHhhChHHHHh----hCCCc-ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC
Q 041423 209 FET-MALEPEKKLEIIEDLVTFSKSRDFYAR----IGKAW-KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD 282 (500)
Q Consensus 209 ~~~-l~~~~~~k~~l~~~l~~~~~~~~~~~~----~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~ 282 (500)
++. |+|+++.++.+...+...+++-..... .++.. +.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 444 689999999887766443333111000 11111 347999999999999999999999999998888766421
Q ss_pred --------hHHHHHHHHh------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 283 --------NTELRKLLIE------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 283 --------~~~l~~l~~~------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
...+..++.. ...++||+|||||.+..-.... ... ..-......
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~--s~~--------------------~dvsg~~vq 212 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENP--SIT--------------------RDVSGEGVQ 212 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccc--ccc--------------------ccccchhHH
Confidence 1223344332 2357899999999864210000 000 000111356
Q ss_pred hHHHHHHhhhhhc---cC------CCeEEEEEcCCc---------------------------C----------------
Q 041423 349 SGLLNFIDGLWSA---CG------GERLIVFTTNYV---------------------------E---------------- 376 (500)
Q Consensus 349 s~lL~~ldg~~~~---~~------~~~ivI~TTN~~---------------------------~---------------- 376 (500)
+.||..|||.... .+ .+.++|+|+|-. +
T Consensus 213 ~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 213 QALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 7788888775321 11 245788888861 0
Q ss_pred -------cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 377 -------KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 377 -------~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
-+.|+|+ ||+|..+.|...+.+.+..|+..-+
T Consensus 293 ~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~~ 331 (413)
T TIGR00382 293 PEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTKPK 331 (413)
T ss_pred HHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHHHH
Confidence 0223443 5999999999999999988877644
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2e-11 Score=133.22 Aligned_cols=153 Identities=14% Similarity=0.301 Sum_probs=107.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++|+|++..++.|...+.. | ..+..||||||||+|||++++++|+.++.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 3688999999999988877554431 1 13446899999999999999999998753
Q ss_pred ------------CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 271 ------------DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 271 ------------~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
+++.++.+.....+.++.+.... ...-|+||||+|.+-
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------------------ 133 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------------------ 133 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------------------
Confidence 23334433223344555554332 246799999998742
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
...++.||..++.. ....++|++|+..+.+.+.+.+++. .++|..++..+...++..++.
T Consensus 134 ------------~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~SR~~---~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 134 ------------TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILSRCQ---RFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred ------------HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHhccc---eeeCCCCCHHHHHHHHHHHHH
Confidence 12355677777653 3457888888888889999988543 489999999888877776654
No 110
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=9.8e-12 Score=135.64 Aligned_cols=153 Identities=17% Similarity=0.348 Sum_probs=113.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC--------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN-------------- 269 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-------------- 269 (500)
..|.+|++|+|++.+++.|...+.. | ..++.||||||+|+|||++++++|..+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4588999999999998887665541 1 2455799999999999999999999875
Q ss_pred -----------CCEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 270 -----------YDVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 270 -----------~~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
++++.++..+...-+.++.++.... ..-|++|||+|.+.
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------------------ 134 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------------------ 134 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------------------
Confidence 3455555544334566777775442 35699999998742
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..|+.. ++..++|++|+.+..|-++|+++|.+ ++|..++.++....++..+.
T Consensus 135 ------------~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~SRc~i---v~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 135 ------------QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILSRCQI---FDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred ------------HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHhhhhe---eecCCCCHHHHHHHHHHHHH
Confidence 12355677777754 34568888888889999999996666 99999999888877776554
No 111
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.39 E-value=4.3e-12 Score=136.78 Aligned_cols=181 Identities=20% Similarity=0.229 Sum_probs=104.3
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCE
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDV 272 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (500)
...|.+|++++|.+...+.+...+ . .+.+..+||+||||||||++|+++..++ +.++
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al----~---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAAL----C---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHH----h---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 356789999999998877775432 1 1234579999999999999999998753 3578
Q ss_pred EEEeecccC-ChHHHH-HH--------------HH------------hhcCCeEEEecchhchhcccCcchhhhcccchH
Q 041423 273 YDLELTAVK-DNTELR-KL--------------LI------------ETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDD 324 (500)
Q Consensus 273 ~~l~l~~~~-~~~~l~-~l--------------~~------------~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~ 324 (500)
+.++|+... ++..+. .+ |. ......+|||||||.+-.. .+..
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~----------~q~~ 194 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV----------QMNK 194 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH----------HHHH
Confidence 888886421 111110 11 11 1123589999999985310 0001
Q ss_pred HHhhhhhhhhc-cCCCCCCcchhcHhHHHHHH-hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHH
Q 041423 325 EKEKLDKEISR-KEPKEEGSSKVTLSGLLNFI-DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGF 402 (500)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~ls~lL~~l-dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~ 402 (500)
++..+...... ......+....+.+.+.... .++ ..+-++|++|||.++.|+|++++ |+ ..|.|+.++.+++
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei 268 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL---PADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCc---ccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHH
Confidence 11111100000 00000000000001110000 111 11236777788999999999999 76 4689999999999
Q ss_pred HHHHHHhhcc
Q 041423 403 KVLAKNYLNV 412 (500)
Q Consensus 403 ~~l~~~~l~~ 412 (500)
..|+++++..
T Consensus 269 ~~Il~~~a~k 278 (531)
T TIGR02902 269 KEIAKNAAEK 278 (531)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.38 E-value=2.7e-12 Score=145.77 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=108.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..++.++|.+.....+++.+.. ..+++.+|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 455788999988766655554321 234578999999999999999999976 677888
Q ss_pred EeecccC--------ChHHHHHHHHhh---cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 275 LELTAVK--------DNTELRKLLIET---TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 275 l~l~~~~--------~~~~l~~l~~~~---~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
+++..+. ....++.+|... ..++||||||||.++. .++. .+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~---~g~~------------------------~~- 286 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVG---AGKA------------------------EG- 286 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc---CCCC------------------------cc-
Confidence 8776652 123567777665 3589999999999752 1110 00
Q ss_pred chhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 344 SKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
......+|. .. ...+...+|++|+..+ .+|+||.| ||.. |.++.|+.+++..|++.+..
T Consensus 287 -~~d~~~~Lk---~~--l~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 287 -AMDAGNMLK---PA--LARGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred -hhHHHHHhc---hh--hhcCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHH
Confidence 011111221 11 1235678888888764 47999999 9964 89999999999999887644
No 113
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.38 E-value=5.6e-12 Score=142.79 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=108.0
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEee
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLEL 277 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l 277 (500)
.++.++|.++..+.+++.+.. ..+++++|+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 467888888887777665432 235589999999999999999999976 477888887
Q ss_pred cccC--------ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 278 TAVK--------DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 278 ~~~~--------~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
+.+. ....++.++.... .++||||||||.++. .+. .. ....
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~---~g~------------------------~~--g~~~ 294 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIG---AGA------------------------AE--GAID 294 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhc---CCC------------------------CC--Cccc
Confidence 6542 2346788887653 578999999999753 110 00 1122
Q ss_pred HhHHHH-HHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 348 LSGLLN-FIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 348 ls~lL~-~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.+.+|. .+ ..+++.+|++|+..+ ..||+|.| ||.. |.++.|+.++...|++...
T Consensus 295 ~a~lLkp~l------~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 295 AANILKPAL------ARGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLR 354 (821)
T ss_pred HHHHhHHHH------hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHH
Confidence 333332 22 235678888888764 47999999 8854 8999999999888877543
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.5e-11 Score=134.32 Aligned_cols=153 Identities=18% Similarity=0.311 Sum_probs=108.8
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
..|.+|++++|++..++.|...+.. | ....+|||+||||||||++|+++|+.+++
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 4678999999999888877655532 1 12347999999999999999999999865
Q ss_pred -------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhh
Q 041423 271 -------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDK 331 (500)
Q Consensus 271 -------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~ 331 (500)
+++.++......-+.++.++.... ..-|++|||+|.+-
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt----------------------- 134 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS----------------------- 134 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------------------
Confidence 233444332233456777765442 34699999999741
Q ss_pred hhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 332 EISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 332 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.||..++.- ....++|++|++++.+-++|++++.. ++|..++.++....+.....
T Consensus 135 -------------~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc~~---~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 135 -------------TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIISRCQR---FDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred -------------HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHhheeE---EEecCCCHHHHHHHHHHHHH
Confidence 12456778887743 34578888888999999999985444 89998988777666555443
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.38 E-value=8.7e-12 Score=137.84 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=117.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
.|.+|++++|++...... ..+...+.. + ...+++||||||||||++|+++|+.++.+++.+++... ...
T Consensus 23 RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~ 91 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEG-RLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVK 91 (725)
T ss_pred CCCcHHHhcCcHHHhhhh-HHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhH
Confidence 489999999998776431 122222221 1 11368999999999999999999999998888776532 222
Q ss_pred HHHHHHHh-------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 285 ELRKLLIE-------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 285 ~l~~l~~~-------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
+++..+.. ...+.+|||||||.+.. .....|+..++.
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------------------------~qQdaLL~~lE~ 135 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------------------------AQQDALLPWVEN 135 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------------------------HHHHHHHHHhcC
Confidence 33333322 23467999999998521 012234444432
Q ss_pred hhhccCCCeEEEEEc--CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHH-hhcCCCCHHH
Q 041423 358 LWSACGGERLIVFTT--NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKL-MEDTKITPAD 434 (500)
Q Consensus 358 ~~~~~~~~~ivI~TT--N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l-~~~~~~spa~ 434 (500)
..+++|++| |....+++++++++++ +.|+.++.+++..+++.++.... ... .....++++-
T Consensus 136 ------g~IiLI~aTTenp~~~l~~aL~SR~~v---~~l~pLs~edi~~IL~~~l~~~~-------~~~g~~~v~I~dea 199 (725)
T PRK13341 136 ------GTITLIGATTENPYFEVNKALVSRSRL---FRLKSLSDEDLHQLLKRALQDKE-------RGYGDRKVDLEPEA 199 (725)
T ss_pred ------ceEEEEEecCCChHhhhhhHhhccccc---eecCCCCHHHHHHHHHHHHHHHH-------hhcCCcccCCCHHH
Confidence 235566544 3445789999996655 99999999999999998874210 000 1123455554
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHH
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQAL 459 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l 459 (500)
+. .+...+ ..+.+.++..+-.++
T Consensus 200 L~-~La~~s-~GD~R~lln~Le~a~ 222 (725)
T PRK13341 200 EK-HLVDVA-NGDARSLLNALELAV 222 (725)
T ss_pred HH-HHHHhC-CCCHHHHHHHHHHHH
Confidence 43 333333 456666666655544
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.37 E-value=3.5e-11 Score=125.59 Aligned_cols=157 Identities=21% Similarity=0.237 Sum_probs=101.6
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecccCCh
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAVKDN 283 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~~~ 283 (500)
.+.+++.++..++|...+...+.+ ..+.++++|||||||||++++.+++.+ +..++.+++....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 355677676666666665544432 123468999999999999999999987 466778887654221
Q ss_pred H-----------------------HH-HH---HHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhcc
Q 041423 284 T-----------------------EL-RK---LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRK 336 (500)
Q Consensus 284 ~-----------------------~l-~~---l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 336 (500)
. .+ .. .+.....+.||+|||+|.+.. .
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~---~----------------------- 153 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE---K----------------------- 153 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc---c-----------------------
Confidence 1 11 11 111123458999999998631 0
Q ss_pred CCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCee-eEEEEccCCCHHHHHHHHHHhhc
Q 041423 337 EPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRM-DKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 337 ~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~-d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.....+..|+..++.. .+.++.+|+++|.. +.+++.+.+ |+ ...|.|++++.++..++++..+.
T Consensus 154 ------~~~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 154 ------EGNDVLYSLLRAHEEY---PGARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred ------CCchHHHHHHHhhhcc---CCCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 0112345555554433 22357788888866 357888776 44 35789999999999999888763
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=3.2e-11 Score=116.31 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=97.4
Q ss_pred ecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 201 IVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
++...|.+|++++.... +.++..+..+.. +....++++|+||||||||+|++++++.+ +.++..+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34556778999773321 233344444332 22345679999999999999999999976 567777777
Q ss_pred cccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 278 TAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
..... .+.......+|+|||+|.+- . .....|+..++.
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~---------------------------------~---~~~~~L~~~~~~ 116 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLD---------------------------------D---AQQIALFNLFNR 116 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcC---------------------------------c---hHHHHHHHHHHH
Confidence 55421 12334456799999999741 0 112345555655
Q ss_pred hhhccCCCeEEEEEcCCcC---cccHHHhcCCee--eEEEEccCCCHHHHHHHHHHhh
Q 041423 358 LWSACGGERLIVFTTNYVE---KLDPALIRRGRM--DKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~---~lD~aLlr~GR~--d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.... ...++|+|++.+. .+.+.|.. |+ ...|+++.|+.+....++..+.
T Consensus 117 ~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 117 VRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 4332 2345666665432 35677776 54 5789999999988877776554
No 118
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=7.9e-12 Score=124.87 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=91.1
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHH------------------HH-HhhcCCeEEEecch
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRK------------------LL-IETTSKSIIVIEDI 304 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~------------------l~-~~~~~~~Il~iDdi 304 (500)
++.+||.||||||||++++.+|..++.+++.++++...+..++.. .+ .....++++++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 468999999999999999999999999999998887644332211 01 11135688999999
Q ss_pred hchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---h--hh-----ccCCCeEEEEEcCC
Q 041423 305 DCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---L--WS-----ACGGERLIVFTTNY 374 (500)
Q Consensus 305 D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---~--~~-----~~~~~~ivI~TTN~ 374 (500)
|.+- ..+++.|+..+|. + .. .......||+|+|.
T Consensus 144 n~a~------------------------------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 144 DAGR------------------------------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred hccC------------------------------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 9741 1133333333331 0 00 01235678999998
Q ss_pred cC------------cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 375 VE------------KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 375 ~~------------~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.+ .+++|++. ||-+.+.++||+.+.-.+|+....
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 65 36889999 998888999999999888877654
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.33 E-value=5.7e-11 Score=120.18 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=102.8
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEe
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-----DVYDLE 276 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~ 276 (500)
.-..|.+|+++++.++.++.+...+. . +. ..+++|+||||||||++++++++.+.. +++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 45678999999999887777655442 1 11 125899999999999999999998733 234444
Q ss_pred ecccCChHHHHHHH----Hhh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 277 LTAVKDNTELRKLL----IET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 277 l~~~~~~~~l~~l~----~~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
.+.......++..+ ... ..+.+++|||+|.+.. ...
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------------------------------~~~ 119 (319)
T PRK00440 76 ASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------------------------------DAQ 119 (319)
T ss_pred cccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------------------------------HHH
Confidence 33332222222222 111 1246999999987521 012
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
..|+..++.. .....+|+++|.+..+.+++.+++. .++|+.++.++...+++.++...
T Consensus 120 ~~L~~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~~---~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 120 QALRRTMEMY----SQNTRFILSCNYSSKIIDPIQSRCA---VFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred HHHHHHHhcC----CCCCeEEEEeCCccccchhHHHHhh---eeeeCCCCHHHHHHHHHHHHHHc
Confidence 3455555543 2335777888888888888888443 39999999999988888877543
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=2.5e-11 Score=136.04 Aligned_cols=157 Identities=15% Similarity=0.280 Sum_probs=108.3
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCc---cc-ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAW---KR-GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTE 285 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~---~r-g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~ 285 (500)
+.|+|+++.++.+.+.+... ..|+.. |. .+||+||||||||++|+++|..++.+++.++++.......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 34678888877776665432 222221 22 4899999999999999999999999999999887533222
Q ss_pred HHHHHH------------------hhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 286 LRKLLI------------------ETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 286 l~~l~~------------------~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
+..+++ .....+|++|||||.+- ...
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------------------------------~~~ 569 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------------------------------PDI 569 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------------------------------HHH
Confidence 222221 12346999999999741 124
Q ss_pred HhHHHHHHhhhhh--ccC-----CCeEEEEEcCCcC-------------------------cccHHHhcCCeeeEEEEcc
Q 041423 348 LSGLLNFIDGLWS--ACG-----GERLIVFTTNYVE-------------------------KLDPALIRRGRMDKHIELS 395 (500)
Q Consensus 348 ls~lL~~ldg~~~--~~~-----~~~ivI~TTN~~~-------------------------~lD~aLlr~GR~d~~I~~~ 395 (500)
.+.||+.+|.-.- ..+ .+.+||+|||.-. .+.|.|+. |||..|.|.
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~ 647 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFN 647 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcC
Confidence 5567777764211 111 2468999998631 24567776 999999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 041423 396 YCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 396 ~p~~~~~~~l~~~~l~~ 412 (500)
+.+.++..+|++..+..
T Consensus 648 pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998743
No 121
>PHA02244 ATPase-like protein
Probab=99.32 E-value=8.9e-11 Score=118.59 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=87.5
Q ss_pred CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHH-------
Q 041423 214 LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTEL------- 286 (500)
Q Consensus 214 ~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l------- 286 (500)
+...........+..++.. +..+||+||||||||++|++||..++.+++.++.. .+...+
T Consensus 100 g~sp~~~~~~~ri~r~l~~-----------~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~ 166 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNA-----------NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDAN 166 (383)
T ss_pred CCCHHHHHHHHHHHHHHhc-----------CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhccccccc
Confidence 3333444444555555543 34699999999999999999999999999988632 111111
Q ss_pred -----HHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh-----
Q 041423 287 -----RKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID----- 356 (500)
Q Consensus 287 -----~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld----- 356 (500)
..++.......+++||||+.+.. .++..|...++
T Consensus 167 g~~~dgpLl~A~~~GgvLiLDEId~a~p------------------------------------~vq~~L~~lLd~r~l~ 210 (383)
T PHA02244 167 GKFHETPFYEAFKKGGLFFIDEIDASIP------------------------------------EALIIINSAIANKFFD 210 (383)
T ss_pred ccccchHHHHHhhcCCEEEEeCcCcCCH------------------------------------HHHHHHHHHhccCeEE
Confidence 12333345689999999997421 11222222332
Q ss_pred ---hhhhccCCCeEEEEEcCCc-----------CcccHHHhcCCeeeEEEEccCCCHHH
Q 041423 357 ---GLWSACGGERLIVFTTNYV-----------EKLDPALIRRGRMDKHIELSYCTFQG 401 (500)
Q Consensus 357 ---g~~~~~~~~~ivI~TTN~~-----------~~lD~aLlr~GR~d~~I~~~~p~~~~ 401 (500)
+.. ....++.+|+|+|.+ ..|++|++. || .+|+|+||+..+
T Consensus 211 l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 211 FADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred ecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcHHH
Confidence 111 123467899999973 568999999 88 679999998433
No 122
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=7.9e-11 Score=128.43 Aligned_cols=192 Identities=19% Similarity=0.235 Sum_probs=117.6
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEeecc
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLELTA 279 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l~~ 279 (500)
+.|.+.++..++|...|...+.+ -.+...++++||||||||++++.+..+| .+.++.|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 34555555555555555444432 1222235699999999999999998876 24567888865
Q ss_pred cCChH-----------------------HHHHHHHhhc----CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 280 VKDNT-----------------------ELRKLLIETT----SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 280 ~~~~~-----------------------~l~~l~~~~~----~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
+.+.. .+..+|.... ...||+|||||.+.. .
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k---K------------------- 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT---K------------------- 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc---c-------------------
Confidence 43322 2233443332 246999999999641 0
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC---cCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY---VEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~---~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
.. ..|+++++... ..+..++||+.+|. ++.|+|.+..+... ..|.|++++.+++.+|++..
T Consensus 885 -----------~Q---DVLYnLFR~~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~R 948 (1164)
T PTZ00112 885 -----------TQ---KVLFTLFDWPT-KINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKER 948 (1164)
T ss_pred -----------HH---HHHHHHHHHhh-ccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHH
Confidence 01 22444444322 12345788888885 56788888884333 24889999999999999888
Q ss_pred hccccchhHHHHHHHhhcCCCCHHHHHHHhCCC--CCCCcHHHHHHHHHHHHHH
Q 041423 410 LNVETHTLFETIQKLMEDTKITPADVAENLMPK--SPSDNVEKCLSSLIQALKE 461 (500)
Q Consensus 410 l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~--~~~~~~~~~~~~l~~~l~~ 461 (500)
+.... ..++++- .+++... ....|++.|++.+..++..
T Consensus 949 Ae~A~-------------gVLdDdA-IELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 949 LENCK-------------EIIDHTA-IQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHhCC-------------CCCCHHH-HHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 74311 1233322 2333321 2357888899888887764
No 123
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=3.3e-12 Score=113.45 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=48.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHH---------------hhcCCeEEEecchhch
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLI---------------ETTSKSIIVIEDIDCS 307 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~---------------~~~~~~Il~iDdiD~~ 307 (500)
+++|+||||||||++++.+|..++.+++.+.++...+..+|..... ....++|++||||+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC
Confidence 4799999999999999999999999999999998777766642211 1124799999999973
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.30 E-value=6.8e-11 Score=123.97 Aligned_cols=165 Identities=15% Similarity=0.267 Sum_probs=101.3
Q ss_pred cccCCCccccc-cCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEE
Q 041423 202 VFEHPATFETM-ALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDL 275 (500)
Q Consensus 202 ~~~~~~~~~~l-~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l 275 (500)
++.+..+|++. +|.... .....+..+... .|. ..++++||||||||||+|++++++++ +..++.+
T Consensus 102 ~l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~------~~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNR--LAHAAALAVAEN------PGK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCCcccccccCCcHH--HHHHHHHHHHhC------cCc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 35556689994 454322 122333333322 121 23468999999999999999999987 4567777
Q ss_pred eecccCCh-------HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 276 ELTAVKDN-------TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 276 ~l~~~~~~-------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
++..+... ..+..+........+|+|||||.+. +.. .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~~~-------------------------------~~~ 218 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA---GKE-------------------------------RTQ 218 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc---CCH-------------------------------HHH
Confidence 76543110 0111222223346799999999852 111 123
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhccc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
..|++.++.+... +..+||.++..|.. +++.|.+ ||. ..++++.|+.++|..|++..+...
T Consensus 219 ~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 219 EEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred HHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 4566666665442 22444444445544 5688887 664 689999999999999999887543
No 125
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.30 E-value=2.7e-11 Score=122.54 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=99.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC-------CCEEEE--
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN-------YDVYDL-- 275 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l-- 275 (500)
.|.+|+.++|+++.++.+.-.+.. +-..++||+||||||||++++++|+.+. .++-..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999988877532210 1113799999999999999999999983 221111
Q ss_pred ----eec-----c-------------------cCChHHHHHHHHh-----------hcCCeEEEecchhchhcccCcchh
Q 041423 276 ----ELT-----A-------------------VKDNTELRKLLIE-----------TTSKSIIVIEDIDCSLDLTGQRKK 316 (500)
Q Consensus 276 ----~l~-----~-------------------~~~~~~l~~l~~~-----------~~~~~Il~iDdiD~~~~~~g~~~~ 316 (500)
++. . +-..-++...+.. .....+|++|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 000 0 0000011111100 1234689999998741
Q ss_pred hhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh---------hhccCCCeEEEEEcCCcC-cccHHHhcCC
Q 041423 317 KAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL---------WSACGGERLIVFTTNYVE-KLDPALIRRG 386 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~ivI~TTN~~~-~lD~aLlr~G 386 (500)
..+.+.|++.|+.- ....+...++|+|+|..+ .+.++|+.
T Consensus 142 ----------------------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 142 ----------------------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred ----------------------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 23556667666421 111233467888888655 58999999
Q ss_pred eeeEEEEccCCCH-HHHHHHHHHhhc
Q 041423 387 RMDKHIELSYCTF-QGFKVLAKNYLN 411 (500)
Q Consensus 387 R~d~~I~~~~p~~-~~~~~l~~~~l~ 411 (500)
||..+|.+++|.. +++.+|+++...
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 9999999999987 888999887543
No 126
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=2e-10 Score=111.22 Aligned_cols=156 Identities=20% Similarity=0.296 Sum_probs=98.3
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+.....+|++.+..+.- .+..+..... | .+...++|+||+|||||+|+.|+++.+ +..+..+++.
T Consensus 11 ~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 44556689998765542 1122211111 1 123459999999999999999998775 4555566654
Q ss_pred ccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 279 AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 279 ~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
... ..+...+....+..+|+|||++.+. +. .. ....+++.++..
T Consensus 79 ~~~--~~~~~~~~~l~~~dlLiIDDi~~l~---~~----------------------------~~---~~~~lf~l~n~~ 122 (233)
T PRK08727 79 AAA--GRLRDALEALEGRSLVALDGLESIA---GQ----------------------------RE---DEVALFDFHNRA 122 (233)
T ss_pred Hhh--hhHHHHHHHHhcCCEEEEeCccccc---CC----------------------------hH---HHHHHHHHHHHH
Confidence 432 2345566666677899999999742 11 11 123344555544
Q ss_pred hhccCCCeEEEEEcC-CcCcc---cHHHhcCCee--eEEEEccCCCHHHHHHHHHHhh
Q 041423 359 WSACGGERLIVFTTN-YVEKL---DPALIRRGRM--DKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN-~~~~l---D~aLlr~GR~--d~~I~~~~p~~~~~~~l~~~~l 410 (500)
... +.-+|+|+| .|..+ +|+|.+ |+ ...++++.|+.+++..+++...
T Consensus 123 ~~~---~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 123 RAA---GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred HHc---CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHH
Confidence 321 233555554 66655 789998 53 4569999999999999998764
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.30 E-value=7.6e-11 Score=125.20 Aligned_cols=165 Identities=17% Similarity=0.308 Sum_probs=102.8
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEe
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLE 276 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~ 276 (500)
.+.+..+|++.+..+.-.. ....+..+... .|.. .++++||||||||||+|++++|+++ +..++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~------~~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRL-AHAAALAVAEN------PGKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCCCcccccccCCCcHH-HHHHHHHHHhC------cCcc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556668999553222221 22333333322 1222 2469999999999999999999987 45577777
Q ss_pred ecccCCh-------HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 277 LTAVKDN-------TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 277 l~~~~~~-------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
+..+... .....+........+|+|||||.+. |.+ .+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~---~~~-------------------------------~~~~ 231 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLA---GKE-------------------------------RTQE 231 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhc---CCH-------------------------------HHHH
Confidence 6554110 0111222333457799999999852 111 1334
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhcc
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.|+..++.+... +..+||.++..|.. ++++|.. ||. ..+++..|+.+++..|++..+..
T Consensus 232 ~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 232 EFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 566767666442 22355544445544 6789888 664 68999999999999999988743
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.4e-11 Score=127.93 Aligned_cols=192 Identities=26% Similarity=0.358 Sum_probs=138.5
Q ss_pred hChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc------CChHHHHHHHHhhc--CCeEEEec
Q 041423 231 KSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV------KDNTELRKLLIETT--SKSIIVIE 302 (500)
Q Consensus 231 ~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~------~~~~~l~~l~~~~~--~~~Il~iD 302 (500)
..+..+...+..++++++++||||||||++++++|+. +.....++...+ .....++.+|.... .++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 3466788889999999999999999999999999999 444433333322 23445666665554 57999999
Q ss_pred chhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHH
Q 041423 303 DIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPAL 382 (500)
Q Consensus 303 diD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aL 382 (500)
++|.+...... ..........+.++..+|++. .+. ++++..||.+..+|+++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~ 135 (494)
T COG0464 84 EIDALAPKRSS-------------------------DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAK 135 (494)
T ss_pred hhhhcccCccc-------------------------cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhH
Confidence 99997643222 034455678899999999997 455 88888999999999999
Q ss_pred hcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHh
Q 041423 383 IRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEG 462 (500)
Q Consensus 383 lr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 462 (500)
.+||||+..+.++.|+...+.++............ ..+...++....++...+....|.++...++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~ 204 (494)
T COG0464 136 RRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-----------PGTGKTLAARTVGKSGADLGALAKEAALRELRRA 204 (494)
T ss_pred hCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-----------cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998877665543211110 3344555555555555556666666666666654
No 129
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.28 E-value=1.3e-10 Score=112.68 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=95.2
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecc
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTA 279 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~ 279 (500)
+.+..+|++.+-.. -...+..+..+... +..+.++||||||||||+|+.++++++. ..+..+++..
T Consensus 15 ~~~~~~fd~f~~~~--n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPGD--NDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccCc--cHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44556888877321 12234444443321 1224799999999999999999998764 3455555544
Q ss_pred cCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh
Q 041423 280 VKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW 359 (500)
Q Consensus 280 ~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~ 359 (500)
... ....++....+-.+|+||||+.+. +. ..+-..|.+.++...
T Consensus 84 ~~~--~~~~~~~~~~~~dlliiDdi~~~~---~~-------------------------------~~~~~~lf~l~n~~~ 127 (235)
T PRK08084 84 RAW--FVPEVLEGMEQLSLVCIDNIECIA---GD-------------------------------ELWEMAIFDLYNRIL 127 (235)
T ss_pred Hhh--hhHHHHHHhhhCCEEEEeChhhhc---CC-------------------------------HHHHHHHHHHHHHHH
Confidence 221 122223333334689999999842 11 112233555555543
Q ss_pred hccCCCeEEEEEcCCcCc---ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 360 SACGGERLIVFTTNYVEK---LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 360 ~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.. +...+++.+++.|.. +.|.|.++..-...+++..|+.+++.++++...
T Consensus 128 e~-g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 128 ES-GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred Hc-CCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 31 112355555556555 579999933223779999999999999987643
No 130
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.28 E-value=1.9e-10 Score=117.24 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=92.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHH--HHh----------hcC----C--eEEEecchh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKL--LIE----------TTS----K--SIIVIEDID 305 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l--~~~----------~~~----~--~Il~iDdiD 305 (500)
.+.+||.||||||||++++++|..++.+++.+.|+.-....++... +.. .+. . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3579999999999999999999999999999999977555554211 111 111 1 399999998
Q ss_pred chhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh-------hh-hccCCCeEEEEEcC----
Q 041423 306 CSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG-------LW-SACGGERLIVFTTN---- 373 (500)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg-------~~-~~~~~~~ivI~TTN---- 373 (500)
..- ..+.+.||..|+. .. -.-....++|+|+|
T Consensus 123 ra~------------------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~ 166 (329)
T COG0714 123 RAP------------------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEY 166 (329)
T ss_pred cCC------------------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcccc
Confidence 731 2356667777663 11 11234568888889
Q ss_pred -CcCcccHHHhcCCeeeEEEEccCCC-HHHHHHHHHHhhc
Q 041423 374 -YVEKLDPALIRRGRMDKHIELSYCT-FQGFKVLAKNYLN 411 (500)
Q Consensus 374 -~~~~lD~aLlr~GR~d~~I~~~~p~-~~~~~~l~~~~l~ 411 (500)
....|++|+++ ||-..+.++||. .++...+......
T Consensus 167 ~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 167 EGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 44568999999 999999999994 5555555555443
No 131
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.27 E-value=2.5e-11 Score=119.70 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=99.6
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-EEEEeecccC-C
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD-VYDLELTAVK-D 282 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~l~~~~-~ 282 (500)
.|.++++.+|++....+ --.+..++.. +. -..++|+|||||||||||+.||+....+ +..+.++... .
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~ 202 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK 202 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc-------CC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc
Confidence 47788888887765443 1222222221 11 1269999999999999999999988776 3345555543 3
Q ss_pred hHHHHHHHHhh-------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 283 NTELRKLLIET-------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 283 ~~~l~~l~~~~-------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
..+++.+|..+ ..+.|||||||+.+-.. -...||-.+
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks------------------------------------QQD~fLP~V 246 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS------------------------------------QQDTFLPHV 246 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh------------------------------------hhhccccee
Confidence 45688888665 36899999999985210 001122211
Q ss_pred hhhhhccCCCeEEEE-EcC-CcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 356 DGLWSACGGERLIVF-TTN-YVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 356 dg~~~~~~~~~ivI~-TTN-~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
..+.+++|. ||. ..-.|..||+.++|+ +.+.....+....|+.+-+
T Consensus 247 ------E~G~I~lIGATTENPSFqln~aLlSRC~V---fvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 247 ------ENGDITLIGATTENPSFQLNAALLSRCRV---FVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ------ccCceEEEecccCCCccchhHHHHhccce---eEeccCCHHHHHHHHHHHH
Confidence 123466676 444 445799999998888 8888889888888887743
No 132
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=5.3e-11 Score=120.73 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=100.1
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------CEE-----
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------DVY----- 273 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~i~----- 273 (500)
.-+|+.|+|+++.|..|+..+... .-.|+||.||+|||||+++++++..+.. ++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 347999999999999887655431 2248999999999999999999987732 111
Q ss_pred -----------------------EEeeccc---CChHH------HHHHHHh-----------hcCCeEEEecchhchhcc
Q 041423 274 -----------------------DLELTAV---KDNTE------LRKLLIE-----------TTSKSIIVIEDIDCSLDL 310 (500)
Q Consensus 274 -----------------------~l~l~~~---~~~~~------l~~l~~~-----------~~~~~Il~iDdiD~~~~~ 310 (500)
.+.+..+ .+.+. +.+.|.. .....+|++|||+.+-
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000 01111 1121111 1235789999998742
Q ss_pred cCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---------hhhccCCCeEEEEEcCCcC-cccH
Q 041423 311 TGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---------LWSACGGERLIVFTTNYVE-KLDP 380 (500)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~ivI~TTN~~~-~lD~ 380 (500)
..+.+.|++.|+. .....+...++|+|.|..+ .+.+
T Consensus 158 ----------------------------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~ 203 (350)
T CHL00081 158 ----------------------------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRP 203 (350)
T ss_pred ----------------------------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCH
Confidence 1244456666642 1111223456677777655 6999
Q ss_pred HHhcCCeeeEEEEccCCC-HHHHHHHHHHhhc
Q 041423 381 ALIRRGRMDKHIELSYCT-FQGFKVLAKNYLN 411 (500)
Q Consensus 381 aLlr~GR~d~~I~~~~p~-~~~~~~l~~~~l~ 411 (500)
+|+. ||.++|.+++|+ .+.+.+|++....
T Consensus 204 ~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 204 QLLD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 9999 999999999998 5899999887643
No 133
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.27 E-value=7.6e-11 Score=103.85 Aligned_cols=115 Identities=29% Similarity=0.389 Sum_probs=80.1
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHH-----------HHHHhhcCCeEEEecchhchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELR-----------KLLIETTSKSIIVIEDIDCSLD 309 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~-----------~l~~~~~~~~Il~iDdiD~~~~ 309 (500)
.+.++++||||||||++++.+++.+ +.+++.+++.......... ........+.+|++||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 4579999999999999999999998 8889998887764332222 112223468999999999741
Q ss_pred ccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc--cCCCeEEEEEcCCcC--cccHHHhcC
Q 041423 310 LTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA--CGGERLIVFTTNYVE--KLDPALIRR 385 (500)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~--~~~~~ivI~TTN~~~--~lD~aLlr~ 385 (500)
......++..+...... ...+..+|++||... .+++.+.+
T Consensus 98 -----------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~- 141 (151)
T cd00009 98 -----------------------------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD- 141 (151)
T ss_pred -----------------------------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh-
Confidence 01223444444443211 124578888998877 78888887
Q ss_pred CeeeEEEEccC
Q 041423 386 GRMDKHIELSY 396 (500)
Q Consensus 386 GR~d~~I~~~~ 396 (500)
|++.+|.+++
T Consensus 142 -r~~~~i~~~~ 151 (151)
T cd00009 142 -RLDIRIVIPL 151 (151)
T ss_pred -hhccEeecCC
Confidence 9988888763
No 134
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6e-11 Score=129.58 Aligned_cols=161 Identities=17% Similarity=0.292 Sum_probs=119.6
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~~~~~~~l 286 (500)
..|+|+++..+.+.+.|..-..+ +.....|. ..+||.||.|+|||-||+++|..|. -.++.+++|.......+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaG---L~dp~rPi-gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAG---LGDPNRPI-GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcC---CCCCCCCc-eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 45789998888888877644432 11112222 2588999999999999999999996 77999999999877778
Q ss_pred HHHHHhhc------------------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 287 RKLLIETT------------------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 287 ~~l~~~~~------------------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
.++++.-| ..|||+||||+.. +.-.+
T Consensus 567 SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------------------------HpdV~ 610 (786)
T COG0542 567 SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------------------------HPDVF 610 (786)
T ss_pred HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------------------------------CHHHH
Confidence 87776543 2589999999873 34577
Q ss_pred hHHHHHHhhhhhccC-------CCeEEEEEcCCcC----------------------------cccHHHhcCCeeeEEEE
Q 041423 349 SGLLNFIDGLWSACG-------GERLIVFTTNYVE----------------------------KLDPALIRRGRMDKHIE 393 (500)
Q Consensus 349 s~lL~~ldg~~~~~~-------~~~ivI~TTN~~~----------------------------~lD~aLlr~GR~d~~I~ 393 (500)
+-||+.+|.=.-..+ .+.|||||||--. ...|.++. |+|..|.
T Consensus 611 nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~ 688 (786)
T COG0542 611 NLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIP 688 (786)
T ss_pred HHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEe
Confidence 888999984322222 2458999999210 12456666 9999999
Q ss_pred ccCCCHHHHHHHHHHhhcc
Q 041423 394 LSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 394 ~~~p~~~~~~~l~~~~l~~ 412 (500)
|.+.+.+...+|+...|..
T Consensus 689 F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 689 FNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999998853
No 135
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=5.2e-10 Score=114.98 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=106.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------- 270 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 270 (500)
.+|+++++|+|++..++.+.+.+.. | ..+..+||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5899999999999998888654432 2 24558999999999999999999997732
Q ss_pred ---------------------CEEEEeec--cc-------CChHHHHHHHHhhc------CCeEEEecchhchhcccCcc
Q 041423 271 ---------------------DVYDLELT--AV-------KDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQR 314 (500)
Q Consensus 271 ---------------------~i~~l~l~--~~-------~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~ 314 (500)
+++.+... .. -.-+.++.+..... .+-|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 12222210 00 01233444443321 3568888888763
Q ss_pred hhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEc
Q 041423 315 KKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIEL 394 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~ 394 (500)
+....+.||..++.. +.+.++|++|+.++.+.|.++++++ .|.|
T Consensus 154 -----------------------------~~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc~---~i~l 197 (365)
T PRK07471 154 -----------------------------NANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRCR---KLRL 197 (365)
T ss_pred -----------------------------CHHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccce---EEEC
Confidence 123456677777643 3457899999999999999988444 4999
Q ss_pred cCCCHHHHHHHHHHhhc
Q 041423 395 SYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 395 ~~p~~~~~~~l~~~~l~ 411 (500)
+.++.++..+++.....
T Consensus 198 ~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 198 RPLAPEDVIDALAAAGP 214 (365)
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999998888877653
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.2e-10 Score=116.43 Aligned_cols=214 Identities=18% Similarity=0.224 Sum_probs=138.4
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-----EEEEeecccCChHHH
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD-----VYDLELTAVKDNTEL 286 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-----i~~l~l~~~~~~~~l 286 (500)
+..-++..+++...+..++++ ..|.++++|||||||||.+++.++.++.-+ ++.+||....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 677788888888877777765 223469999999999999999999988554 788999887554433
Q ss_pred -HHHHH------------------------hhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCC
Q 041423 287 -RKLLI------------------------ETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEE 341 (500)
Q Consensus 287 -~~l~~------------------------~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (500)
.+++. ......|+++||+|.++.-
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~------------------------------- 138 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK------------------------------- 138 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccc-------------------------------
Confidence 22222 1224689999999997521
Q ss_pred CcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhH
Q 041423 342 GSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLF 418 (500)
Q Consensus 342 ~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 418 (500)
.. ..+-.|+..-+.. ...+++|+.+|.. +.+||.+.+.-. ..+|.|++.+.+|...|++......
T Consensus 139 ~~--~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~----- 206 (366)
T COG1474 139 DG--EVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEG----- 206 (366)
T ss_pred cc--hHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhh-----
Confidence 00 2233333222221 3346888888876 468888877422 3559999999999999988876421
Q ss_pred HHHHHHhhcCCCCHHHHHHHhCC--CCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 041423 419 ETIQKLMEDTKITPADVAENLMP--KSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESREE 484 (500)
Q Consensus 419 ~~i~~l~~~~~~spa~i~~~l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (500)
+....+++.- .+++.. .....|++.++..+..+...+..+...+.....+++..+..+.
T Consensus 207 ------~~~~~~~~~v-l~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 207 ------FSAGVIDDDV-LKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred ------ccCCCcCccH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 1111222222 122221 0123388999998888888877777666666666666444443
No 137
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.1e-09 Score=110.77 Aligned_cols=148 Identities=15% Similarity=0.227 Sum_probs=105.3
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--------CEEEEeec-
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY--------DVYDLELT- 278 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--------~i~~l~l~- 278 (500)
+|++++|++.+++.+...+. . ...++.|||+||+|+|||++|+++|..+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~-~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------K-NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------c-CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 58999999988888766552 1 134558999999999999999999997632 34444331
Q ss_pred c-cCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 279 A-VKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 279 ~-~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
. .-.-+.++.+..... ..-|++||++|.+- ....+.|
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------------------------------~~a~naL 113 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------------------------------EQAQNAF 113 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------------------------------HHHHHHH
Confidence 1 113345676665332 45799999998741 1234567
Q ss_pred HHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 352 LNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 352 L~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
|..++. .+.+.++|++|++++.|-|+++.+++. ++|+.++.++....+...+
T Consensus 114 LK~LEe----pp~~t~~il~~~~~~~ll~TI~SRc~~---~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 114 LKTIEE----PPKGVFIILLCENLEQILDTIKSRCQI---YKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHhcC----CCCCeEEEEEeCChHhCcHHHHhhcee---eeCCCcCHHHHHHHHHHHh
Confidence 777764 345678888889999999999996655 9999999988877666544
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.22 E-value=7.8e-11 Score=124.19 Aligned_cols=154 Identities=17% Similarity=0.309 Sum_probs=114.4
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-------------
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------------- 271 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------- 271 (500)
.|.+|++|+|++.+.+.|...+..- ....+|||.||.||||||+++.+|..+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4789999999998888886655421 233589999999999999999999988664
Q ss_pred -----------EEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 272 -----------VYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 272 -----------i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
++.++..+-..-+++|.+..... ..-|++|||++.+.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------------------- 132 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------------------- 132 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------------------
Confidence 11122222234456777766653 35799999999852
Q ss_pred ccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
....+.||-.++. .+..+++|++|..+.++++.+++++.. +.|...+.++....+..++..+
T Consensus 133 ----------~~afNALLKTLEE----PP~hV~FIlATTe~~Kip~TIlSRcq~---f~fkri~~~~I~~~L~~i~~~E 194 (515)
T COG2812 133 ----------KQAFNALLKTLEE----PPSHVKFILATTEPQKIPNTILSRCQR---FDFKRLDLEEIAKHLAAILDKE 194 (515)
T ss_pred ----------HHHHHHHhccccc----CccCeEEEEecCCcCcCchhhhhcccc---ccccCCCHHHHHHHHHHHHHhc
Confidence 2356677776653 356799999999999999999995444 8899999999888888888644
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.22 E-value=2.4e-10 Score=125.17 Aligned_cols=178 Identities=16% Similarity=0.242 Sum_probs=101.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|.+|++++|.+...+.++..+. .+.+..++|+|||||||||+|+++++.. +.+++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 48899999999988887654431 1234579999999999999999998866 346788
Q ss_pred EeecccCC-hHHHH----------------HHHHh------------hcCCeEEEecchhchhcccCcchhhhcccchHH
Q 041423 275 LELTAVKD-NTELR----------------KLLIE------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDE 325 (500)
Q Consensus 275 l~l~~~~~-~~~l~----------------~l~~~------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~ 325 (500)
+++..+.. ...+. +.+.. ..+..+|||||++.+-.. .+..+
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~----------~Q~~L 285 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL----------LQNKL 285 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH----------HHHHH
Confidence 88765431 11110 11111 124579999999874210 00111
Q ss_pred HhhhhhhhhccCCCCCCcchhcHhHHH-HHHhhhhhccCCCeEEEE-EcCCcCcccHHHhcCCeeeEEEEccCCCHHHHH
Q 041423 326 KEKLDKEISRKEPKEEGSSKVTLSGLL-NFIDGLWSACGGERLIVF-TTNYVEKLDPALIRRGRMDKHIELSYCTFQGFK 403 (500)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~ls~lL-~~ldg~~~~~~~~~ivI~-TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~ 403 (500)
...+......-..+............+ ..++. .....+++|+ ||+.++.++++|.+ |+. .+.|+.++.++..
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~---~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEE---GAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhccc---CccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 111111000000000000000001111 11111 1122345554 66778899999988 775 4789999999999
Q ss_pred HHHHHhhc
Q 041423 404 VLAKNYLN 411 (500)
Q Consensus 404 ~l~~~~l~ 411 (500)
.|+++++.
T Consensus 360 ~Il~~~a~ 367 (615)
T TIGR02903 360 LIVLNAAE 367 (615)
T ss_pred HHHHHHHH
Confidence 99998764
No 140
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=1.5e-10 Score=122.23 Aligned_cols=166 Identities=17% Similarity=0.318 Sum_probs=99.1
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEe
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLE 276 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~ 276 (500)
++.+..+|++.+..+.-.. ....+..+... .| +.++++||||||||||+|++++|+++ +..++.++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~------~~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKN------PG--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhC------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556668999763332221 22233333322 22 23469999999999999999999986 34566666
Q ss_pred ecccCCh-------HHHHHHHHhh-cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 277 LTAVKDN-------TELRKLLIET-TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 277 l~~~~~~-------~~l~~l~~~~-~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
+..+... ..+....... .++.+|+|||++.+. |.. .+.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~---~~~-------------------------------~~q 213 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI---GKT-------------------------------GVQ 213 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc---CcH-------------------------------HHH
Confidence 5543100 0111111111 257899999999853 111 122
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
..++..++.+... +..+||.+.++|.. +++.|.++......+.+..|+.+.|..|++..+..
T Consensus 214 ~elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 214 TELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HHHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 3455666655442 22344444456654 55678874444567999999999999999988753
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=3.5e-10 Score=119.24 Aligned_cols=129 Identities=20% Similarity=0.342 Sum_probs=85.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCCh-------HHHHHHHHhhcCCeEEEecchhchhcccCcc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDN-------TELRKLLIETTSKSIIVIEDIDCSLDLTGQR 314 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~-------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~ 314 (500)
++++||||||+|||+|++++++++ +..+..++...+... ..+..+-....+..+|+||||+.+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~---~k- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS---GK- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc---CC-
Confidence 579999999999999999999987 567777765443110 0111111113456799999999842 11
Q ss_pred hhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC-c---CcccHHHhcCCee--
Q 041423 315 KKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY-V---EKLDPALIRRGRM-- 388 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~-~---~~lD~aLlr~GR~-- 388 (500)
..+...|+..++.+.. .+..+|+|+|. | ..++++|.+ ||
T Consensus 218 ------------------------------~~~qeelf~l~N~l~~---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~ 262 (445)
T PRK12422 218 ------------------------------GATQEEFFHTFNSLHT---EGKLIVISSTCAPQDLKAMEERLIS--RFEW 262 (445)
T ss_pred ------------------------------hhhHHHHHHHHHHHHH---CCCcEEEecCCCHHHHhhhHHHHHh--hhcC
Confidence 1123345555555433 22456666654 4 356789998 66
Q ss_pred eEEEEccCCCHHHHHHHHHHhhcc
Q 041423 389 DKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 389 d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
...+.++.|+.+.+..|++.....
T Consensus 263 Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 263 GIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHH
Confidence 488999999999999999887644
No 142
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=1.3e-10 Score=119.12 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=50.0
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCC-CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGK-AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.|+|+++.|+.+...+..-++....-..... ..++++||+||||||||+++++||..++.+++.++++.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 3789999999997777543322111111111 12468999999999999999999999999999987753
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=1.2e-10 Score=118.17 Aligned_cols=153 Identities=21% Similarity=0.280 Sum_probs=98.0
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC-------CCEE-------
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN-------YDVY------- 273 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~------- 273 (500)
+|..++|+++.|..++-.+... ...+++|.|||||||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5889999999998875544321 123799999999999999999998872 2111
Q ss_pred ------E------------------Eeecc------cCChHHHHHHHH-----------hhcCCeEEEecchhchhcccC
Q 041423 274 ------D------------------LELTA------VKDNTELRKLLI-----------ETTSKSIIVIEDIDCSLDLTG 312 (500)
Q Consensus 274 ------~------------------l~l~~------~~~~~~l~~l~~-----------~~~~~~Il~iDdiD~~~~~~g 312 (500)
. +++.. +...-++...+. ....+.+|++|||+.+-
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~---- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE---- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC----
Confidence 0 01000 001111222111 11245799999998742
Q ss_pred cchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---------hhhccCCCeEEEEEcCCcC-cccHHH
Q 041423 313 QRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---------LWSACGGERLIVFTTNYVE-KLDPAL 382 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~ivI~TTN~~~-~lD~aL 382 (500)
....+.|++.|+. .........++|+|+|..+ .+.++|
T Consensus 145 --------------------------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~L 192 (337)
T TIGR02030 145 --------------------------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQL 192 (337)
T ss_pred --------------------------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHH
Confidence 1244556666642 1111223457777777655 699999
Q ss_pred hcCCeeeEEEEccCCCH-HHHHHHHHHhhc
Q 041423 383 IRRGRMDKHIELSYCTF-QGFKVLAKNYLN 411 (500)
Q Consensus 383 lr~GR~d~~I~~~~p~~-~~~~~l~~~~l~ 411 (500)
+. ||.+++.+++|.. +++.+|+++...
T Consensus 193 ld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 193 LD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred Hh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 99 9999999999986 888899887543
No 144
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.19 E-value=2.3e-10 Score=117.32 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=50.5
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhh-CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARI-GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-++|+++.|+.+...+..-+++...-... +-..|+++||+||||||||++++++|..++.+++.++.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 36899999999877666543332211111 122357899999999999999999999999999998865
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=1.1e-09 Score=124.38 Aligned_cols=161 Identities=16% Similarity=0.280 Sum_probs=108.5
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHH
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTE 285 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~ 285 (500)
++.|+|++...+.+...+.....+ ....+.| ...+||+||||||||++|++||..+ +.+++.++++.+.....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~g---l~~~~~p-~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAG---LSDPNRP-IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhc---ccCCCCC-CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 556889988888887777654321 0000111 1248999999999999999999987 44688888887644333
Q ss_pred HHHHHH---------------h---hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 286 LRKLLI---------------E---TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 286 l~~l~~---------------~---~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
...+++ . ....++|+||||+.+- ...
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------------------------------~~v 686 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------------------------------PDV 686 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------------------------------HHH
Confidence 333331 1 1234899999998731 224
Q ss_pred HhHHHHHHhhh--hhcc-----CCCeEEEEEcCCc-------------------------CcccHHHhcCCeeeEEEEcc
Q 041423 348 LSGLLNFIDGL--WSAC-----GGERLIVFTTNYV-------------------------EKLDPALIRRGRMDKHIELS 395 (500)
Q Consensus 348 ls~lL~~ldg~--~~~~-----~~~~ivI~TTN~~-------------------------~~lD~aLlr~GR~d~~I~~~ 395 (500)
.+.|++.+|.- .... -.+.+||+|||.. ..+.|+|+. |+|..+.|.
T Consensus 687 ~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~ 764 (857)
T PRK10865 687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFH 764 (857)
T ss_pred HHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecC
Confidence 56677777521 1110 1235899999972 124578887 999999999
Q ss_pred CCCHHHHHHHHHHhhc
Q 041423 396 YCTFQGFKVLAKNYLN 411 (500)
Q Consensus 396 ~p~~~~~~~l~~~~l~ 411 (500)
+++.+....|++.++.
T Consensus 765 PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 765 PLGEQHIASIAQIQLQ 780 (857)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999884
No 146
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=2.8e-10 Score=106.54 Aligned_cols=124 Identities=22% Similarity=0.293 Sum_probs=87.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC------------------------CEEEEeeccc-CChHHHHHHHHhhc---
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY------------------------DVYDLELTAV-KDNTELRKLLIETT--- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~l~~~-~~~~~l~~l~~~~~--- 294 (500)
.+..||||||||+|||++++++|..+.. ++..+..... ..-+.++.++....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4457999999999999999999998743 2333333221 12345655554432
Q ss_pred ---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEE
Q 041423 295 ---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFT 371 (500)
Q Consensus 295 ---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~T 371 (500)
.+.|++|||+|.+- ....+.||..++.. +...++|++
T Consensus 93 ~~~~~kviiide~~~l~------------------------------------~~~~~~Ll~~le~~----~~~~~~il~ 132 (188)
T TIGR00678 93 QESGRRVVIIEDAERMN------------------------------------EAAANALLKTLEEP----PPNTLFILI 132 (188)
T ss_pred ccCCeEEEEEechhhhC------------------------------------HHHHHHHHHHhcCC----CCCeEEEEE
Confidence 46799999999852 11345577777653 345678888
Q ss_pred cCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 372 TNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 372 TN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
||.+..|.+++.+++. .++|+.|+.++...++...
T Consensus 133 ~~~~~~l~~~i~sr~~---~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 133 TPSPEKLLPTIRSRCQ---VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred ECChHhChHHHHhhcE---EeeCCCCCHHHHHHHHHHc
Confidence 8888999999999554 4999999999987777665
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=3.9e-10 Score=121.19 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=88.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecccCCh-------HHHHHHHHhhcCCeEEEecchhchhcccC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAVKDN-------TELRKLLIETTSKSIIVIEDIDCSLDLTG 312 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~~~-------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g 312 (500)
+.++|||++|||||+|+.||++++ +..+..+++..+... ..+..+.....+..+|+||||+.+. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~---g 391 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLE---D 391 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhcccc---C
Confidence 459999999999999999999987 456777776554210 0111122223456899999999853 1
Q ss_pred cchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc----CcccHHHhcCCee
Q 041423 313 QRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV----EKLDPALIRRGRM 388 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~----~~lD~aLlr~GR~ 388 (500)
.. .+...|++.++.+... +.-||+|+|.+ ..+++.|.++...
T Consensus 392 ke-------------------------------~tqeeLF~l~N~l~e~---gk~IIITSd~~P~eL~~l~~rL~SRf~~ 437 (617)
T PRK14086 392 KE-------------------------------STQEEFFHTFNTLHNA---NKQIVLSSDRPPKQLVTLEDRLRNRFEW 437 (617)
T ss_pred CH-------------------------------HHHHHHHHHHHHHHhc---CCCEEEecCCChHhhhhccHHHHhhhhc
Confidence 11 1234566677766442 23455566653 3578899995444
Q ss_pred eEEEEccCCCHHHHHHHHHHhhccc
Q 041423 389 DKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 389 d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
...+++..|+.+.|..|++......
T Consensus 438 GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 438 GLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred CceEEcCCCCHHHHHHHHHHHHHhc
Confidence 7788999999999999998876543
No 148
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=1.9e-09 Score=110.33 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=101.9
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-------E----
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD-------V---- 272 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-------i---- 272 (500)
.||+.|+.|+|+++.++.+...+. .| ..+..+||+||+|+|||+++..+|..+... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 599999999999988887765442 12 234579999999999999999999987541 1
Q ss_pred -------------------EEEeec--c-------cCChHHHHHHH---Hhhc---CCeEEEecchhchhcccCcchhhh
Q 041423 273 -------------------YDLELT--A-------VKDNTELRKLL---IETT---SKSIIVIEDIDCSLDLTGQRKKKA 318 (500)
Q Consensus 273 -------------------~~l~l~--~-------~~~~~~l~~l~---~~~~---~~~Il~iDdiD~~~~~~g~~~~~~ 318 (500)
+.+.-. . .-.-+.++.+. ...+ ..-|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 111100 0 00112333332 2221 3457777777764
Q ss_pred cccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCC
Q 041423 319 EKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCT 398 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~ 398 (500)
+....+.||..++.. +...++|+.|+.++.+.|.++. |. .++.|+.++
T Consensus 154 -------------------------~~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 154 -------------------------NRNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred -------------------------CHHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 123456677777653 3456778888889999999988 55 469999999
Q ss_pred HHHHHHHHHHh
Q 041423 399 FQGFKVLAKNY 409 (500)
Q Consensus 399 ~~~~~~l~~~~ 409 (500)
.++...++...
T Consensus 202 ~~~~~~~L~~~ 212 (351)
T PRK09112 202 DDELKKALSHL 212 (351)
T ss_pred HHHHHHHHHHh
Confidence 99998888763
No 149
>PRK05642 DNA replication initiation factor; Validated
Probab=99.16 E-value=8.5e-10 Score=106.91 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=97.8
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+..+..+|++.+... ....+..+..+... .+-...+.++||||+|||||+|++|+++++ +..+..++..
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~------~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhc------cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 344556888877322 23344444443321 111113578999999999999999999865 4567777765
Q ss_pred ccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 279 AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 279 ~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
.+... ...++....+--+|+|||++.+. |. ..+-..|++.++.+
T Consensus 83 ~~~~~--~~~~~~~~~~~d~LiiDDi~~~~---~~-------------------------------~~~~~~Lf~l~n~~ 126 (234)
T PRK05642 83 ELLDR--GPELLDNLEQYELVCLDDLDVIA---GK-------------------------------ADWEEALFHLFNRL 126 (234)
T ss_pred HHHhh--hHHHHHhhhhCCEEEEechhhhc---CC-------------------------------hHHHHHHHHHHHHH
Confidence 54321 12233333344689999999742 11 11234466666665
Q ss_pred hhccCCCeEEEEEcCCcCc---ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 359 WSACGGERLIVFTTNYVEK---LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
... +..+||.++..|.. +.|.|..+..-...+.+..|+.+.+..+++...
T Consensus 127 ~~~--g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 127 RDS--GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred Hhc--CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 432 23455544444543 368898833225778999999999999988543
No 150
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.16 E-value=9.9e-10 Score=125.02 Aligned_cols=160 Identities=14% Similarity=0.256 Sum_probs=107.8
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
..|+|++...+.+.+.+.....+ ..... .+...+||+||||||||++|++||..+ +.+++.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~-~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPN-RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 45788888888888877654321 00000 122358999999999999999999987 457888888876443333
Q ss_pred HHHHH----------------h--hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 287 RKLLI----------------E--TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 287 ~~l~~----------------~--~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
..+++ . ....+||+||||+.+ +....
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------------------------------~~~v~ 684 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------------------------------HPDVF 684 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------------------------------CHHHH
Confidence 33221 1 123579999999873 12345
Q ss_pred hHHHHHHhhh--hhcc-----CCCeEEEEEcCCcCc-------------------------ccHHHhcCCeeeEEEEccC
Q 041423 349 SGLLNFIDGL--WSAC-----GGERLIVFTTNYVEK-------------------------LDPALIRRGRMDKHIELSY 396 (500)
Q Consensus 349 s~lL~~ldg~--~~~~-----~~~~ivI~TTN~~~~-------------------------lD~aLlr~GR~d~~I~~~~ 396 (500)
+.||+.+|.- .... -.+.+||+|||.... +.|.|+. |+|..+.|.+
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~P 762 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHP 762 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCC
Confidence 6677777521 1111 135689999997211 2355665 9999999999
Q ss_pred CCHHHHHHHHHHhhc
Q 041423 397 CTFQGFKVLAKNYLN 411 (500)
Q Consensus 397 p~~~~~~~l~~~~l~ 411 (500)
++.+....|+..++.
T Consensus 763 L~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 763 LGREQIARIVEIQLG 777 (852)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988874
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=9.2e-10 Score=124.91 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=104.5
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
+.|+|++...+.|...+.....+ +...+.| ...+||+||||||||++|+++|..+ +.+++.++++.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p-~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRP-IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCC-ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 45778888888887766533221 0111111 1248999999999999999999987 356788887765332222
Q ss_pred HHHHH----------------h--hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 287 RKLLI----------------E--TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 287 ~~l~~----------------~--~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
.++++ . ....+|++|||||.+- ....
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~------------------------------------~~v~ 628 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------------------------------PDIF 628 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC------------------------------------HHHH
Confidence 22221 1 1234899999999741 2245
Q ss_pred hHHHHHHhhhh--hcc-----CCCeEEEEEcCCcCc-------------------------------------ccHHHhc
Q 041423 349 SGLLNFIDGLW--SAC-----GGERLIVFTTNYVEK-------------------------------------LDPALIR 384 (500)
Q Consensus 349 s~lL~~ldg~~--~~~-----~~~~ivI~TTN~~~~-------------------------------------lD~aLlr 384 (500)
+.|+..+|.-. ... -.+.+||+|||.... +.|.|+.
T Consensus 629 ~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln 708 (821)
T CHL00095 629 NLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN 708 (821)
T ss_pred HHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc
Confidence 66777776311 111 135789999984311 1245566
Q ss_pred CCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 385 RGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 385 ~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
|+|..|.|.+.+.++..+|+...+.
T Consensus 709 --Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 709 --RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred --cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988874
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.11 E-value=4.4e-10 Score=127.18 Aligned_cols=157 Identities=19% Similarity=0.290 Sum_probs=106.5
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCC-Ccccc-eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGK-AWKRG-YLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNT 284 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~-~~~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~ 284 (500)
+.|+|+++..+.+.+.+.....+ ..- ..|.| +||+||||||||.+|+++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG------LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC------CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 45789999988888887654322 111 12334 8999999999999999999998 4467888887764332
Q ss_pred HHHHH-------------------HHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcch
Q 041423 285 ELRKL-------------------LIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSK 345 (500)
Q Consensus 285 ~l~~l-------------------~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (500)
.+.++ +.. ...+||+|||||.+- .
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~------------------------------------~ 682 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH------------------------------------P 682 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC------------------------------------H
Confidence 22222 222 456999999998631 1
Q ss_pred hcHhHHHHHHhhhh--hccC-----CCeEEEEEcCCcC-----------------------------cccHHHhcCCeee
Q 041423 346 VTLSGLLNFIDGLW--SACG-----GERLIVFTTNYVE-----------------------------KLDPALIRRGRMD 389 (500)
Q Consensus 346 ~~ls~lL~~ldg~~--~~~~-----~~~ivI~TTN~~~-----------------------------~lD~aLlr~GR~d 389 (500)
...+.|++.+|.-. ...| .+.+||+|||... .+.|+|+. |++
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~ 760 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT 760 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee
Confidence 24455666666321 1111 3478999999411 14567777 898
Q ss_pred EEEEccCCCHHHHHHHHHHhhcc
Q 041423 390 KHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 390 ~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.|.|...+.++..+|+...+..
T Consensus 761 -iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 761 -VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999988743
No 153
>PRK06620 hypothetical protein; Validated
Probab=99.11 E-value=1.4e-09 Score=103.75 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=88.6
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCc-ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAW-KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~ 281 (500)
..++-+|++.+..+.- +.....+..+.. ..+..+ .+.++||||||||||+|++++++..+..+. +...
T Consensus 9 ~~~~~tfd~Fvvg~~N-~~a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~-- 77 (214)
T PRK06620 9 TSSKYHPDEFIVSSSN-DQAYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIF-- 77 (214)
T ss_pred CCCCCCchhhEecccH-HHHHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhh--
Confidence 3444578887643321 123333433322 122222 367999999999999999999998875322 2111
Q ss_pred ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc
Q 041423 282 DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA 361 (500)
Q Consensus 282 ~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 361 (500)
... .. .....+++|||||.+- . ..|...++.+..
T Consensus 78 ~~~---~~---~~~~d~lliDdi~~~~------------------------------------~---~~lf~l~N~~~e- 111 (214)
T PRK06620 78 FNE---EI---LEKYNAFIIEDIENWQ------------------------------------E---PALLHIFNIINE- 111 (214)
T ss_pred hch---hH---HhcCCEEEEeccccch------------------------------------H---HHHHHHHHHHHh-
Confidence 011 11 1245789999998520 0 134444444433
Q ss_pred cCCCeEEEEEcCCcCc--ccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhc
Q 041423 362 CGGERLIVFTTNYVEK--LDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 362 ~~~~~ivI~TTN~~~~--lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.+..++|.++..|.. + |+|+. |+. ..+++..|+.+.+..+++....
T Consensus 112 -~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 112 -KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234566666655544 5 88888 553 4699999999999998877753
No 154
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=1e-10 Score=100.61 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=62.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHH--HHhh-------c---CCeEEEecchhchhcccCc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKL--LIET-------T---SKSIIVIEDIDCSLDLTGQ 313 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l--~~~~-------~---~~~Il~iDdiD~~~~~~g~ 313 (500)
.+||.|+||+|||++|+++|..++.++..|.++.-...+++... +... + -..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 37999999999999999999999999999988754444444311 1110 1 1479999999873
Q ss_pred chhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh-------hhhhccCCCeEEEEEcCCcC-----cccHH
Q 041423 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID-------GLWSACGGERLIVFTTNYVE-----KLDPA 381 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld-------g~~~~~~~~~ivI~TTN~~~-----~lD~a 381 (500)
...+.|.||..|. |.....+...+||+|-|..+ .|++|
T Consensus 75 ------------------------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea 124 (131)
T PF07726_consen 75 ------------------------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEA 124 (131)
T ss_dssp -------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HH
T ss_pred ------------------------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHH
Confidence 2347788888885 22233445678999999877 68899
Q ss_pred HhcCCee
Q 041423 382 LIRRGRM 388 (500)
Q Consensus 382 Llr~GR~ 388 (500)
++. ||
T Consensus 125 ~~D--RF 129 (131)
T PF07726_consen 125 QLD--RF 129 (131)
T ss_dssp HHT--TS
T ss_pred Hhc--cc
Confidence 998 76
No 155
>PRK08116 hypothetical protein; Validated
Probab=99.11 E-value=1.3e-09 Score=107.68 Aligned_cols=148 Identities=18% Similarity=0.308 Sum_probs=87.8
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC--
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD-- 282 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~-- 282 (500)
+|++....+.. +.....+..|... +.... ...+|++|+||||||||+|+.|||+++ +.+++.++...+-.
T Consensus 83 tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 83 TFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred chhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 56666543333 3344445555543 11111 223579999999999999999999986 67777777654311
Q ss_pred --------hHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 283 --------NTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 283 --------~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
......++.......+|+|||+... ..+......|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e----------------------------------~~t~~~~~~l~~i 203 (268)
T PRK08116 158 KSTYKSSGKEDENEIIRSLVNADLLILDDLGAE----------------------------------RDTEWAREKVYNI 203 (268)
T ss_pred HHHHhccccccHHHHHHHhcCCCEEEEecccCC----------------------------------CCCHHHHHHHHHH
Confidence 0112234444556679999999641 1122345667777
Q ss_pred HhhhhhccCCCeEEEEEcCCc-Cc----ccHHHhcCCee---eEEEEccCCCH
Q 041423 355 IDGLWSACGGERLIVFTTNYV-EK----LDPALIRRGRM---DKHIELSYCTF 399 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~-~~----lD~aLlr~GR~---d~~I~~~~p~~ 399 (500)
+|.... .+..+|+|||.+ +. +++++.. |+ -..|.+.-++.
T Consensus 204 in~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 204 IDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 776533 335688888865 23 5667776 53 23466665553
No 156
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.10 E-value=1.9e-09 Score=103.38 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=85.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecccCC-------hHHHHHHHHhhcCCeEEEecchhchhcccCc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAVKD-------NTELRKLLIETTSKSIIVIEDIDCSLDLTGQ 313 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~~-------~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~ 313 (500)
.++||||+|+|||.|++|+++++ +..+..++...... ...+..+......--+|+|||++.+. +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~---~- 111 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA---G- 111 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT---T-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc---C-
Confidence 58999999999999999999975 44566766554311 01223344555677899999999853 1
Q ss_pred chhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeeeE
Q 041423 314 RKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMDK 390 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~ 390 (500)
...+...|.+.++.+... +..+||.+...|.. ++|.|..+-.-..
T Consensus 112 ------------------------------~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl 159 (219)
T PF00308_consen 112 ------------------------------KQRTQEELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRSRLSWGL 159 (219)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHHHHHCSE
T ss_pred ------------------------------chHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhhhHhhcc
Confidence 122456677777776543 34565555566654 5678887333346
Q ss_pred EEEccCCCHHHHHHHHHHhhccc
Q 041423 391 HIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 391 ~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
.+++..|+.+.+..|++......
T Consensus 160 ~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 160 VVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp EEEE----HHHHHHHHHHHHHHT
T ss_pred hhhcCCCCHHHHHHHHHHHHHHh
Confidence 79999999999999999887543
No 157
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.10 E-value=7e-10 Score=107.59 Aligned_cols=97 Identities=22% Similarity=0.393 Sum_probs=68.4
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
..++.+|++.....+..+.++..+..|.... .. ...+++|+||||||||+|+.+||+++ +..+..++...
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---DG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---cc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 4456789998766555555667777666431 11 12489999999999999999999998 66777776655
Q ss_pred cCC---------hHHHHHHHHhhcCCeEEEecchhc
Q 041423 280 VKD---------NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 280 ~~~---------~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+.. +.....++.......+|+|||+++
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~ 173 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGV 173 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCC
Confidence 421 112234555566788999999987
No 158
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.09 E-value=3.8e-09 Score=112.62 Aligned_cols=109 Identities=19% Similarity=0.371 Sum_probs=84.8
Q ss_pred cCceeecccCCCccccccCChhhHHHHHHHHHHHhh---C---hHH-----------H----HhhCCCcccceeeeCCCC
Q 041423 196 TMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSK---S---RDF-----------Y----ARIGKAWKRGYLLYGPPG 254 (500)
Q Consensus 196 ~~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~---~---~~~-----------~----~~~g~~~~rg~LL~GPpG 254 (500)
.+|- .-..|..|.+|.+++.+-..++..|+.|-- + ..+ + ...+.|.++-+||+||||
T Consensus 259 kLWV--dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWV--DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceee--cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4664 456789999999999999999988877642 1 111 1 112355666789999999
Q ss_pred CcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhh----------cCCeEEEecchhc
Q 041423 255 TGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIET----------TSKSIIVIEDIDC 306 (500)
Q Consensus 255 tGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~----------~~~~Il~iDdiD~ 306 (500)
-||||||+.||.+.|+.++.++.++-.+...++.-+..+ .+|..|||||||-
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 999999999999999999999999988777776544332 3689999999996
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.4e-09 Score=108.97 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=101.0
Q ss_pred ccccccC-ChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC----------------
Q 041423 208 TFETMAL-EPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY---------------- 270 (500)
Q Consensus 208 ~~~~l~~-~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~---------------- 270 (500)
.|++|+| ++.+++.+...+. . | ..+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~-------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K-------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677787 6666666644432 1 1 24568999999999999999999998632
Q ss_pred --------CEEEEeeccc-CChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhc
Q 041423 271 --------DVYDLELTAV-KDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISR 335 (500)
Q Consensus 271 --------~i~~l~l~~~-~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (500)
++..+....- -.-++++.+....+ .+-|++|||+|.+-
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------------------- 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------------------- 123 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------------------
Confidence 2433332211 12345665554432 35699999998741
Q ss_pred cCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 336 KEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 336 ~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
....+.||..++.. ++..++|++|+.++.|-|+++++++. ++|+.|+.++....+..
T Consensus 124 ---------~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc~~---i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 124 ---------ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILSRCQV---VEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---------HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHhhcee---eeCCCCCHHHHHHHHHH
Confidence 12445677777753 45678889999999999999997777 99999999887766654
No 160
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.05 E-value=2.6e-09 Score=110.82 Aligned_cols=27 Identities=41% Similarity=0.693 Sum_probs=24.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+++++|+||||||||++|+++|..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 458999999999999999999998853
No 161
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.05 E-value=4.1e-09 Score=111.46 Aligned_cols=162 Identities=18% Similarity=0.286 Sum_probs=99.1
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeeccc
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAV 280 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~ 280 (500)
+.+|++.+..+.- +.....+..+... .|.. .++++||||+|||||+|++|+++++ +..++.++...+
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~------~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKN------PGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhC------cCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4678886633322 2222333333222 2322 2479999999999999999999976 345666665543
Q ss_pred CCh---------HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 281 KDN---------TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 281 ~~~---------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
... ..+...........+|+||||+.+. |. ..+...|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~---~k-------------------------------~~~~e~l 228 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS---YK-------------------------------EKTNEIF 228 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc---CC-------------------------------HHHHHHH
Confidence 110 1222222333456799999998742 11 1234456
Q ss_pred HHHHhhhhhccCCCeEEEEEcCC-cC---cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 352 LNFIDGLWSACGGERLIVFTTNY-VE---KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 352 L~~ldg~~~~~~~~~ivI~TTN~-~~---~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
...++.+... +..+|+|+|. |+ .+++.|..+..-...+.+..|+.+++.+++++.+..
T Consensus 229 f~l~N~~~~~---~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 229 FTIFNNFIEN---DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred HHHHHHHHHc---CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 6666655432 2355666664 33 357889883333578999999999999999988753
No 162
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=7.8e-10 Score=101.78 Aligned_cols=109 Identities=21% Similarity=0.404 Sum_probs=74.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC----CEEEEeecccCC----hHHHHHHHHhhc------CCeEEEecchhchhcc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY----DVYDLELTAVKD----NTELRKLLIETT------SKSIIVIEDIDCSLDL 310 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~----~i~~l~l~~~~~----~~~l~~l~~~~~------~~~Il~iDdiD~~~~~ 310 (500)
..+||.||+|||||.+++++|..+.. ++..++++.+.. ...+..++...+ ...||+|||||.+...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 46899999999999999999999996 899999999977 445556665543 3469999999996421
Q ss_pred cCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc--cC-----CCeEEEEEcCCcCcc
Q 041423 311 TGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA--CG-----GERLIVFTTNYVEKL 378 (500)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~--~~-----~~~ivI~TTN~~~~l 378 (500)
.+.. .+-......+.||..+|+-.-. .+ .+.++|+|+|--...
T Consensus 84 ~~~~-------------------------~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 84 NSGG-------------------------ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp TTTC-------------------------SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHH
T ss_pred cccc-------------------------chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccch
Confidence 0000 0111224567788888753221 11 356899999975543
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1.8e-09 Score=94.10 Aligned_cols=64 Identities=27% Similarity=0.452 Sum_probs=46.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC---EEEEeecccCC--------------------hHHHHHHHHhhc--CCeEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD---VYDLELTAVKD--------------------NTELRKLLIETT--SKSII 299 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~l~~~~~--------------------~~~l~~l~~~~~--~~~Il 299 (500)
+.++|+||||||||++++.+|..+... ++.+++..... ......++..+. .+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 478999999999999999999999876 77776665321 122333333333 25999
Q ss_pred Eecchhchh
Q 041423 300 VIEDIDCSL 308 (500)
Q Consensus 300 ~iDdiD~~~ 308 (500)
++||++.+.
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999999853
No 164
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=7.8e-09 Score=104.60 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=50.7
Q ss_pred ccc-cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-------CEEEEee
Q 041423 208 TFE-TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-------DVYDLEL 277 (500)
Q Consensus 208 ~~~-~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~i~~l~l 277 (500)
-|+ ++.|.++.++++++.+.....+ .+ ..++.++|+|||||||||++++||+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g------~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQG------LE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhc------CC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 367 8999999999888777655532 11 23467899999999999999999999977 8999877
No 165
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.02 E-value=1e-09 Score=102.64 Aligned_cols=46 Identities=33% Similarity=0.525 Sum_probs=35.3
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
.|++|+|++..|..+.-.. .| ..++||+||||||||++|+++...|
T Consensus 1 Df~dI~GQe~aKrAL~iAA------------aG---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA------------AG---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH------------HC---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHH------------cC---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3789999999998884322 23 3589999999999999999999876
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=7.7e-09 Score=104.90 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=89.7
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC------------------------CEEEEeecc---cCChHHHHHHHHhhc-
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY------------------------DVYDLELTA---VKDNTELRKLLIETT- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~l~~---~~~~~~l~~l~~~~~- 294 (500)
.+.+|||+||+|+|||++|.++|..+.. +++.+.... .-.-+.++.+.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3558999999999999999999998743 455554321 113355666554432
Q ss_pred -----CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEE
Q 041423 295 -----SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIV 369 (500)
Q Consensus 295 -----~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI 369 (500)
..-|++||++|.+- ....+.||..++.- +++.++|
T Consensus 101 ~~~~~~~kv~iI~~a~~m~------------------------------------~~aaNaLLK~LEEP----p~~~~fi 140 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMN------------------------------------RNAANALLKSLEEP----SGDTVLL 140 (328)
T ss_pred ccccCCCeEEEECChhhCC------------------------------------HHHHHHHHHHHhCC----CCCeEEE
Confidence 35678899999842 23456778777753 4568999
Q ss_pred EEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 370 FTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 370 ~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
++|++++.|.|+++++++. +.|+.|+.++....+...
T Consensus 141 L~t~~~~~ll~TI~SRc~~---~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 141 LISHQPSRLLPTIKSRCQQ---QACPLPSNEESLQWLQQA 177 (328)
T ss_pred EEECChhhCcHHHHhhcee---eeCCCcCHHHHHHHHHHh
Confidence 9999999999999995555 999999988877666554
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.99 E-value=1.2e-08 Score=106.86 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=80.2
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeecccCChHHH------HHH-----HHh-----hcCCeEEEecchh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAVKDNTEL------RKL-----LIE-----TTSKSIIVIEDID 305 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~~~~~~l------~~l-----~~~-----~~~~~Il~iDdiD 305 (500)
...+||+||||||||++|++++..++. ++..+.+.-. +..++ ... |.. .+...++|+|||.
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 457999999999999999999998753 3333322210 11221 111 111 1123489999997
Q ss_pred chhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh-hhhhc-----cCCCeEEEEEcCCcC---
Q 041423 306 CSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID-GLWSA-----CGGERLIVFTTNYVE--- 376 (500)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld-g~~~~-----~~~~~ivI~TTN~~~--- 376 (500)
.+ +..+.+.||..|. +.... .-..+++++|||...
T Consensus 118 ra------------------------------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g 161 (498)
T PRK13531 118 KA------------------------------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEAD 161 (498)
T ss_pred cC------------------------------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccC
Confidence 53 2346777888883 22111 112367788888543
Q ss_pred cccHHHhcCCeeeEEEEccCCC-HHHHHHHHHHh
Q 041423 377 KLDPALIRRGRMDKHIELSYCT-FQGFKVLAKNY 409 (500)
Q Consensus 377 ~lD~aLlr~GR~d~~I~~~~p~-~~~~~~l~~~~ 409 (500)
...+|+.. ||-++|.+|+|+ .+.++.|+...
T Consensus 162 ~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 162 SSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 23459999 998999999997 57778887654
No 168
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.99 E-value=1.3e-09 Score=120.02 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=99.7
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-------------------
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL------------------- 268 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l------------------- 268 (500)
+|..|+|++..|..+.-.+... --.|+||.||||||||+++++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5789999998887664322211 11379999999999999999999988
Q ss_pred ----------------CCCEEEEeecccC----ChHHHHHHHH-----------hhcCCeEEEecchhchhcccCcchhh
Q 041423 269 ----------------NYDVYDLELTAVK----DNTELRKLLI-----------ETTSKSIIVIEDIDCSLDLTGQRKKK 317 (500)
Q Consensus 269 ----------------~~~i~~l~l~~~~----~~~~l~~l~~-----------~~~~~~Il~iDdiD~~~~~~g~~~~~ 317 (500)
..+++.+.++... ..-++...+. ......|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 2455555444321 1111222221 01245799999999852
Q ss_pred hcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh-hh--------hhccCCCeEEEEEcCCc-CcccHHHhcCCe
Q 041423 318 AEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID-GL--------WSACGGERLIVFTTNYV-EKLDPALIRRGR 387 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld-g~--------~~~~~~~~ivI~TTN~~-~~lD~aLlr~GR 387 (500)
....+.|++.|+ |. ........++|+|+|.. ..+.++|+. |
T Consensus 140 ---------------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R 190 (633)
T TIGR02442 140 ---------------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--R 190 (633)
T ss_pred ---------------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--h
Confidence 234556777765 21 11112346888888864 368899999 9
Q ss_pred eeEEEEccCCC-HHHHHHHHHHhhc
Q 041423 388 MDKHIELSYCT-FQGFKVLAKNYLN 411 (500)
Q Consensus 388 ~d~~I~~~~p~-~~~~~~l~~~~l~ 411 (500)
|+++|.++++. .+++.++++..+.
T Consensus 191 ~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 191 FGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred cceEEEccCCCchHHHHHHHHHHHh
Confidence 99999999886 5777788776543
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.1e-08 Score=101.19 Aligned_cols=147 Identities=18% Similarity=0.244 Sum_probs=101.6
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-----------------
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY----------------- 270 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~----------------- 270 (500)
.|++|+|++.+++.+...+.. | ..+..|||+||+|+||+++|.++|..+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999888665532 1 23458999999999999999999998632
Q ss_pred -CEEEEeeccc-C----------------------ChHHHHHHHHhh---c---CCeEEEecchhchhcccCcchhhhcc
Q 041423 271 -DVYDLELTAV-K----------------------DNTELRKLLIET---T---SKSIIVIEDIDCSLDLTGQRKKKAEK 320 (500)
Q Consensus 271 -~i~~l~l~~~-~----------------------~~~~l~~l~~~~---~---~~~Il~iDdiD~~~~~~g~~~~~~~~ 320 (500)
+++.+..... . .-+.++.+.... + ..-|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233322100 0 012344443222 2 35788888887641
Q ss_pred cchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHH
Q 041423 321 SSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQ 400 (500)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~ 400 (500)
....+.||..|+.. + +.++|++|+.++.|-|++++++.. +.|+.++.+
T Consensus 138 ------------------------~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRcq~---i~f~~l~~~ 185 (314)
T PRK07399 138 ------------------------EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRCQI---IPFYRLSDE 185 (314)
T ss_pred ------------------------HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhceE---EecCCCCHH
Confidence 12445677777653 2 457888999999999999996655 999999999
Q ss_pred HHHHHHHHhh
Q 041423 401 GFKVLAKNYL 410 (500)
Q Consensus 401 ~~~~l~~~~l 410 (500)
+..+++....
T Consensus 186 ~~~~~L~~~~ 195 (314)
T PRK07399 186 QLEQVLKRLG 195 (314)
T ss_pred HHHHHHHHhh
Confidence 9888877664
No 170
>PRK09087 hypothetical protein; Validated
Probab=98.97 E-value=9.2e-09 Score=99.07 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=76.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDE 325 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~ 325 (500)
.++|+||+|+|||+|+++++...+..++. .... .. ..+.... ..+|+|||+|.+.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~-~~----~~~~~~~-~~~l~iDDi~~~~----------------- 100 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIH--PNEI-GS----DAANAAA-EGPVLIEDIDAGG----------------- 100 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHc-ch----HHHHhhh-cCeEEEECCCCCC-----------------
Confidence 48999999999999999999887655333 2221 11 1111111 2578899999731
Q ss_pred HhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCee--eEEEEccCCCHH
Q 041423 326 KEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRM--DKHIELSYCTFQ 400 (500)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~--d~~I~~~~p~~~ 400 (500)
.+..+|++.++.+... +..+||.++..+.. ..|.|+. |+ ...+++..|+.+
T Consensus 101 --------------------~~~~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 101 --------------------FDETGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --------------------CCHHHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 0123466666665432 23344444444432 3678887 55 377999999999
Q ss_pred HHHHHHHHhhcc
Q 041423 401 GFKVLAKNYLNV 412 (500)
Q Consensus 401 ~~~~l~~~~l~~ 412 (500)
.+..++++.+..
T Consensus 157 ~~~~iL~~~~~~ 168 (226)
T PRK09087 157 LLSQVIFKLFAD 168 (226)
T ss_pred HHHHHHHHHHHH
Confidence 999999988743
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.1e-09 Score=114.73 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=107.0
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEee
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLEL 277 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l 277 (500)
.++.|+|-++..+++++.+....+ ++-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~K-------------NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTK-------------NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCC-------------CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 478899999888888887764443 478999999999999999999754 666889988
Q ss_pred cccC--------ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 278 TAVK--------DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 278 ~~~~--------~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
..+. -+..|+.++.+.. .+.|||||||+.+. |.... .+. ...
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiV---GAG~~------------------------~G~-a~D 286 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIV---GAGAT------------------------EGG-AMD 286 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhc---CCCcc------------------------ccc-ccc
Confidence 8872 3456777777664 37999999999975 32211 111 222
Q ss_pred HhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 348 LSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 348 ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.+.+|.-. ...++.-+|++|..-+ .=|+||-| || ..|.+..|+.++...|++-.-.
T Consensus 287 AaNiLKPa-----LARGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 287 AANLLKPA-----LARGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred hhhhhHHH-----HhcCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHH
Confidence 33332221 1224455555554222 23899999 99 5599999999999888775543
No 172
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.1e-08 Score=103.60 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=83.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC------------------------CCEEEEeecccCC----hHHHHHHHHhhc---
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN------------------------YDVYDLELTAVKD----NTELRKLLIETT--- 294 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~l~~~~~----~~~l~~l~~~~~--- 294 (500)
.+||+||||||||++|.++|+.+. .+++.++.++... .+.++.+.....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 799999999999999999999987 6788888877654 334454443332
Q ss_pred ---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEE
Q 041423 295 ---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFT 371 (500)
Q Consensus 295 ---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~T 371 (500)
..-|++|||+|.+-. ...+.++-.+.. .+.+..+|++
T Consensus 106 ~~~~~kviiidead~mt~------------------------------------~A~nallk~lEe----p~~~~~~il~ 145 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE------------------------------------DAANALLKTLEE----PPKNTRFILI 145 (325)
T ss_pred CCCCceEEEeCcHHHHhH------------------------------------HHHHHHHHHhcc----CCCCeEEEEE
Confidence 357999999998521 122334444432 2456789999
Q ss_pred cCCcCcccHHHhcCCeeeEEEEccCCCHHHHHH
Q 041423 372 TNYVEKLDPALIRRGRMDKHIELSYCTFQGFKV 404 (500)
Q Consensus 372 TN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~ 404 (500)
||.++.+-|.+.++++. +.|+.|+...+..
T Consensus 146 ~n~~~~il~tI~SRc~~---i~f~~~~~~~~i~ 175 (325)
T COG0470 146 TNDPSKILPTIRSRCQR---IRFKPPSRLEAIA 175 (325)
T ss_pred cCChhhccchhhhccee---eecCCchHHHHHH
Confidence 99999999999996666 8888766544433
No 173
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.96 E-value=3.3e-09 Score=104.89 Aligned_cols=163 Identities=18% Similarity=0.325 Sum_probs=90.9
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCE---EEEeecccC
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV---YDLELTAVK 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i---~~l~l~~~~ 281 (500)
+-.+|.++..+...-.+....+..++.. ++.+||+||+|||||++++..-..+..+- ..++++...
T Consensus 5 ~~~~~~~~~VpT~dt~r~~~ll~~l~~~-----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T 73 (272)
T PF12775_consen 5 PEMPFNEILVPTVDTVRYSYLLDLLLSN-----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT 73 (272)
T ss_dssp --------T---HHHHHHHHHHHHHHHC-----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH
T ss_pred cccccceEEeCcHHHHHHHHHHHHHHHc-----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC
Confidence 3445666666655555555555555544 46799999999999999998777665443 346666655
Q ss_pred ChHHHHHHHHhh-------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 282 DNTELRKLLIET-------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 282 ~~~~l~~l~~~~-------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
+...++.++... ..++|+||||+..... +.-.+...+
T Consensus 74 ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~------------------------------d~ygtq~~i 123 (272)
T PF12775_consen 74 TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQP------------------------------DKYGTQPPI 123 (272)
T ss_dssp HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---------------------------------TTS--HHH
T ss_pred CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCC------------------------------CCCCCcCHH
Confidence 555666554332 1358999999987310 111222334
Q ss_pred hHHHHHHh--hhhhccC------CCeEEEEEcCCcC---cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 349 SGLLNFID--GLWSACG------GERLIVFTTNYVE---KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 349 s~lL~~ld--g~~~~~~------~~~ivI~TTN~~~---~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.-|.+.+| |++.... .++.+|+++|... .|++.|+|..++ +.+++|+.+....|+..++.
T Consensus 124 ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i---~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 124 ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNI---LNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEE---EE----TCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEE---EEecCCChHHHHHHHHHHHh
Confidence 44445555 3333211 3467888887543 489999994444 99999999988888777664
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=1.1e-08 Score=111.49 Aligned_cols=208 Identities=21% Similarity=0.257 Sum_probs=117.5
Q ss_pred CceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEE-E
Q 041423 197 MWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD-L 275 (500)
Q Consensus 197 ~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~-l 275 (500)
.|. .-..|.++++|+++++..+++...+.... .+....+.++|+||||||||++++++|+.++.++.. .
T Consensus 73 pW~--eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 73 PWV--EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred chH--HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 464 46679999999999887776654443221 122334459999999999999999999999876432 1
Q ss_pred e---ecc------------------cCChHHHHHHHHhh------------cCCeEEEecchhchhcccCcchhhhcccc
Q 041423 276 E---LTA------------------VKDNTELRKLLIET------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSS 322 (500)
Q Consensus 276 ~---l~~------------------~~~~~~l~~l~~~~------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~ 322 (500)
+ +.. ......+..++..+ ..+.||||||||.++..
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r------------ 210 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR------------ 210 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh------------
Confidence 1 000 01122333333322 24679999999985420
Q ss_pred hHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC--------------cccHHHhcCCee
Q 041423 323 DDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE--------------KLDPALIRRGRM 388 (500)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~--------------~lD~aLlr~GR~ 388 (500)
.. ..+..+|... .. ..+.-.+|+++|..+. .|.++++...|+
T Consensus 211 --------------------~~-~~lq~lLr~~-~~--e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv 266 (637)
T TIGR00602 211 --------------------DT-RALHEILRWK-YV--SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV 266 (637)
T ss_pred --------------------hH-HHHHHHHHHH-hh--cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce
Confidence 01 1233333311 01 1111123333442221 134788854466
Q ss_pred eEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCC-CHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 041423 389 DKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKI-TPADVAENLMPKSPSDNVEKCLSSLIQALK 460 (500)
Q Consensus 389 d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~-spa~i~~~l~~~~~~~~~~~~~~~l~~~l~ 460 (500)
.+|.|.+.+..+.++.++..+....... .....+ +++.+...+. ....|.+.|+..|--+..
T Consensus 267 -~~I~FnPia~t~l~K~L~rIl~~E~~~~-------~~~~~~p~~~~l~~I~~--~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 267 -SNISFNPIAPTIMKKFLNRIVTIEAKKN-------GEKIKVPKKTSVELLCQ--GCSGDIRSAINSLQFSSS 329 (637)
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHhhhhcc-------ccccccCCHHHHHHHHH--hCCChHHHHHHHHHHHHh
Confidence 4799999999998888888875421110 011112 2344433333 256688888888865543
No 175
>PRK12377 putative replication protein; Provisional
Probab=98.95 E-value=5.9e-09 Score=101.39 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=59.8
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC--
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD-- 282 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~-- 282 (500)
+|++.....+..+.++..+..|... |.. ...+++|+||||||||+|+.|||+.+ +..+..++...+..
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~---~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADE---LMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHH---HHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 5777654433333454555555433 111 13589999999999999999999988 56666666554311
Q ss_pred ------hHHHHHHHHhhcCCeEEEecchhc
Q 041423 283 ------NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 283 ------~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
......++.......+|+|||+..
T Consensus 145 ~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 145 HESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred HHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 112234556667789999999975
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.92 E-value=6.7e-09 Score=104.33 Aligned_cols=96 Identities=23% Similarity=0.435 Sum_probs=66.9
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC-
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK- 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~- 281 (500)
..+|+++...+..+..+......|+.. |.. | +..+|++|+||||||||+|+.|||+++ |.++..+....+-
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 357777776665565666666666653 111 1 245799999999999999999999998 6777777665431
Q ss_pred ------ChHHHHHHHHhhcCCeEEEecchhc
Q 041423 282 ------DNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 282 ------~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
....+...+.......+|+||||..
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~ 228 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGA 228 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCC
Confidence 1112445566667889999999965
No 177
>PRK08181 transposase; Validated
Probab=98.89 E-value=2.5e-08 Score=98.26 Aligned_cols=63 Identities=25% Similarity=0.473 Sum_probs=46.7
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC-------hHHHHHHHHhhcCCeEEEecchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD-------NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~-------~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+.+++|+||||||||+|+.|+|+++ |..++.++...+.. ...+.+.+.......+|+|||++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccc
Confidence 4589999999999999999999865 66677666544311 122344556666788999999986
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.83 E-value=1.1e-08 Score=110.08 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=94.9
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcc--cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE----eecccCChH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWK--RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL----ELTAVKDNT 284 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~--rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l----~l~~~~~~~ 284 (500)
.+.|.+..|..|+-.+ +.+-.....-|...+ -.+||+|+||||||+++++++.......+.. ++..+.. .
T Consensus 204 ~i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-A 279 (509)
T ss_pred cccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-c
Confidence 4667777776664333 222111111122221 2599999999999999999999886554432 1111110 0
Q ss_pred HHHH----------HHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 285 ELRK----------LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 285 ~l~~----------l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
.++. -........+++|||+|.+- ..+.+.|+..
T Consensus 280 ~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~------------------------------------~~~q~~L~e~ 323 (509)
T smart00350 280 VTRDPETREFTLEGGALVLADNGVCCIDEFDKMD------------------------------------DSDRTAIHEA 323 (509)
T ss_pred ceEccCcceEEecCccEEecCCCEEEEechhhCC------------------------------------HHHHHHHHHH
Confidence 0111 00112357899999999842 1233445555
Q ss_pred Hhh---------hhhccCCCeEEEEEcCCcC-------------cccHHHhcCCeeeEEEEc-cCCCHHHHHHHHHHhhc
Q 041423 355 IDG---------LWSACGGERLIVFTTNYVE-------------KLDPALIRRGRMDKHIEL-SYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 355 ldg---------~~~~~~~~~ivI~TTN~~~-------------~lD~aLlr~GR~d~~I~~-~~p~~~~~~~l~~~~l~ 411 (500)
|+. ....-.....||+|+|..+ .|++++++ |||..+.+ ++|+.+....|+++.+.
T Consensus 324 me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 324 MEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred HhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 532 1111123467899999763 58999999 99986554 88999999999888653
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.82 E-value=1.5e-07 Score=85.92 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=77.3
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHh-----------------------CCCEEEEeeccc---CChHHHHHHHHhhc--
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLL-----------------------NYDVYDLELTAV---KDNTELRKLLIETT-- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l-----------------------~~~i~~l~l~~~---~~~~~l~~l~~~~~-- 294 (500)
.+..|||+||+|+||+++|.++|..+ ..+++.++.... -.-++++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 45579999999999999999999865 234555554432 23456666665543
Q ss_pred ----CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEE
Q 041423 295 ----SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF 370 (500)
Q Consensus 295 ----~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~ 370 (500)
..-|++|||+|.+- ....+.||..|+.- +.+.++|+
T Consensus 98 ~~~~~~KviiI~~ad~l~------------------------------------~~a~NaLLK~LEep----p~~~~fiL 137 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT------------------------------------EEAQNALLKTLEEP----PENTYFIL 137 (162)
T ss_dssp -TTSSSEEEEEETGGGS-------------------------------------HHHHHHHHHHHHST----TTTEEEEE
T ss_pred HhcCCceEEEeehHhhhh------------------------------------HHHHHHHHHHhcCC----CCCEEEEE
Confidence 35799999999842 23567788888754 45689999
Q ss_pred EcCCcCcccHHHhcCCeeeEEEEccC
Q 041423 371 TTNYVEKLDPALIRRGRMDKHIELSY 396 (500)
Q Consensus 371 TTN~~~~lD~aLlr~GR~d~~I~~~~ 396 (500)
+|+.++.|-|.++.|+.. +.|+.
T Consensus 138 ~t~~~~~il~TI~SRc~~---i~~~~ 160 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQV---IRFRP 160 (162)
T ss_dssp EES-GGGS-HHHHTTSEE---EEE--
T ss_pred EECChHHChHHHHhhceE---EecCC
Confidence 999999999999995544 66654
No 180
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=8e-08 Score=97.64 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=45.7
Q ss_pred hcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 346 VTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 346 ~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
..-+.||..++. .+.+.++|++|++++.|.|.+++++ ..|.|+.|+.++..+.+...
T Consensus 147 ~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~LLpTI~SRc---q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 147 AAANALLKTLEE----PPPGTVFLLVSARIDRLLPTILSRC---RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHhcC----CCcCcEEEEEECChhhCcHHHHhcC---EEEEecCCCHHHHHHHHHHc
Confidence 355778888874 3567899999999999999999944 45999999998888776553
No 181
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.7e-08 Score=96.66 Aligned_cols=65 Identities=28% Similarity=0.506 Sum_probs=55.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-------C-hHHHHHHHHhh------cCCeEEEecchhchh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-------D-NTELRKLLIET------TSKSIIVIEDIDCSL 308 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-------~-~~~l~~l~~~~------~~~~Il~iDdiD~~~ 308 (500)
+.++||.||.|+|||.|++.||..++.||...+|+.+. + +.-+.+|+..+ .+..|+||||+|.+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 34799999999999999999999999999999999873 2 34467777665 368999999999975
No 182
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.9e-08 Score=102.43 Aligned_cols=134 Identities=24% Similarity=0.317 Sum_probs=90.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE-eeccc------CChHHHHHHHHhhc--CCeEEEecchhchhcccCcch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL-ELTAV------KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRK 315 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l-~l~~~------~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~ 315 (500)
..+||+||||+|||+||..+|...++|++.+ +..++ ..-..+++.|..+. .-+||++|||+.+++....
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 4589999999999999999999999998864 33222 22335677887764 3599999999998864321
Q ss_pred hhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccH-HHhcCCeeeEEEEc
Q 041423 316 KKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP-ALIRRGRMDKHIEL 394 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-aLlr~GR~d~~I~~ 394 (500)
+...++..+-.|+-++..... .+...+|++||...+-|.. .++. .|+..|++
T Consensus 617 ------------------------GPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~V 669 (744)
T KOG0741|consen 617 ------------------------GPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILD--CFSSTIHV 669 (744)
T ss_pred ------------------------CchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHH--hhhheeec
Confidence 234455666666666654422 1223455556666655543 4556 89999999
Q ss_pred cCCCH-HHHHHHHH
Q 041423 395 SYCTF-QGFKVLAK 407 (500)
Q Consensus 395 ~~p~~-~~~~~l~~ 407 (500)
|..+. ++...++.
T Consensus 670 pnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLE 683 (744)
T ss_pred CccCchHHHHHHHH
Confidence 98875 55555544
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=1.1e-07 Score=106.40 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=93.5
Q ss_pred eeeeC--CCCCcHHHHHHHHHHHh-----CCCEEEEeecccCChHHHHHHHHhhc--------CCeEEEecchhchhccc
Q 041423 247 YLLYG--PPGTGKSTMIAAMANLL-----NYDVYDLELTAVKDNTELRKLLIETT--------SKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 247 ~LL~G--PpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~~~~~l~~l~~~~~--------~~~Il~iDdiD~~~~~~ 311 (500)
.+..| |++.||||+|.++|+.+ +.+++.++.++...-+.++.++.... ..-|++|||+|.+-
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--- 643 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--- 643 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC---
Confidence 35668 99999999999999998 56789999998666667777664421 13699999999852
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEE
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKH 391 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~ 391 (500)
....+.|+..|+.. +....+|++||+++.+.++|++++..
T Consensus 644 ---------------------------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC~~--- 683 (846)
T PRK04132 644 ---------------------------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRCAI--- 683 (846)
T ss_pred ---------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhceE---
Confidence 12345677777643 34578999999999999999995544
Q ss_pred EEccCCCHHHHHHHHHHhhc
Q 041423 392 IELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 392 I~~~~p~~~~~~~l~~~~l~ 411 (500)
+.|+.|+.++....++....
T Consensus 684 i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHH
Confidence 99999998888777766553
No 184
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=1.2e-07 Score=96.39 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNT 284 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~ 284 (500)
.|++++|.....+.+++.+...... ...+||+|++||||+++|++|-... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 3678899998888888888776643 3469999999999999999997654 46899999998753 3
Q ss_pred HHH-HHHHh-----------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchh
Q 041423 285 ELR-KLLIE-----------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKV 346 (500)
Q Consensus 285 ~l~-~l~~~-----------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
.+. .+|+. ......|||||||.+-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------------------------~ 115 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------L 115 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------------------------H
Confidence 332 33321 23467899999998521 1
Q ss_pred cHhHHHHHHhhhh-hccC------CCeEEEEEcCCc-------CcccHHHhcCCee-eEEEEccCCC--HHHHHHHHHHh
Q 041423 347 TLSGLLNFIDGLW-SACG------GERLIVFTTNYV-------EKLDPALIRRGRM-DKHIELSYCT--FQGFKVLAKNY 409 (500)
Q Consensus 347 ~ls~lL~~ldg~~-~~~~------~~~ivI~TTN~~-------~~lD~aLlr~GR~-d~~I~~~~p~--~~~~~~l~~~~ 409 (500)
....|+++++.-. ...+ .++-||+||+.. ..+.+.|.. |+ ...|++|+.. .++...|+..|
T Consensus 116 ~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~f 193 (326)
T PRK11608 116 VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHF 193 (326)
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHH
Confidence 2334555554211 0001 135677777642 345667776 77 4578887765 35666677777
Q ss_pred hc
Q 041423 410 LN 411 (500)
Q Consensus 410 l~ 411 (500)
+.
T Consensus 194 l~ 195 (326)
T PRK11608 194 AI 195 (326)
T ss_pred HH
Confidence 63
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7e-08 Score=94.30 Aligned_cols=66 Identities=33% Similarity=0.490 Sum_probs=54.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-------C-hHHHHHHHHhh------cCCeEEEecchhchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-------D-NTELRKLLIET------TSKSIIVIEDIDCSLD 309 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-------~-~~~l~~l~~~~------~~~~Il~iDdiD~~~~ 309 (500)
+.++||.||.|||||.||+.+|..|+.||...+.+.+. + +.-+.+++..+ .++.||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 34699999999999999999999999999998888773 2 23345666554 3689999999999864
No 186
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.76 E-value=3.5e-07 Score=90.76 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=45.6
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeeccc
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAV 280 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~ 280 (500)
+-++|+.+.++.. -.+...++ -|.-..+|+|+.||||||||.||-+||.+||. ||..++.+.+
T Consensus 39 dG~VGQ~~AReAa-GvIv~mik-------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAA-GVIVKMIK-------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhh-hHHHHHHH-------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 5688888887764 22332222 34556789999999999999999999999975 4555555544
No 187
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.75 E-value=5.9e-08 Score=89.03 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=62.2
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHHH
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELRK 288 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~~ 288 (500)
|+|.....+++++.+...... +..+||+|++||||+.+|++|-+.. +.|++.++|+.+..+.--..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 466677777787777766654 3579999999999999999999865 46899999998854443456
Q ss_pred HHHhh-----------------cCCeEEEecchhch
Q 041423 289 LLIET-----------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 289 l~~~~-----------------~~~~Il~iDdiD~~ 307 (500)
+|+.. .....||||||+.+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhh
Confidence 66532 24689999999985
No 188
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=8.4e-08 Score=97.26 Aligned_cols=123 Identities=15% Similarity=0.221 Sum_probs=85.2
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhC-------------------------CCEEEEeeccc----------CChHHH
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLN-------------------------YDVYDLELTAV----------KDNTEL 286 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~-------------------------~~i~~l~l~~~----------~~~~~l 286 (500)
..+.+|||+||+|+|||++|.++|..+. ++++.++...- -.-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3456899999999999999999999763 34555554210 123455
Q ss_pred HHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhh
Q 041423 287 RKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWS 360 (500)
Q Consensus 287 ~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~ 360 (500)
+.+..... ..-|++||+++.+- ....+.++..++..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------------------------------~~a~naLLk~LEep-- 140 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------------------------------LQAANSLLKVLEEP-- 140 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------------------------------HHHHHHHHHHHHhC--
Confidence 55544432 34677888887741 22445567777654
Q ss_pred ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 361 ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 361 ~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
..+.++|++|++++.+.|++.++++. +.|+.|+.++....+.
T Consensus 141 --~~~~~~Ilvth~~~~ll~ti~SRc~~---~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 141 --PPQVVFLLVSHAADKVLPTIKSRCRK---MVLPAPSHEEALAYLR 182 (325)
T ss_pred --cCCCEEEEEeCChHhChHHHHHHhhh---hcCCCCCHHHHHHHHH
Confidence 23467888999999999999996555 9999999888765554
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=8.1e-08 Score=104.94 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeecccC----ChHHHHHHHH-----------hhcCCeEEEecchhchh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAVK----DNTELRKLLI-----------ETTSKSIIVIEDIDCSL 308 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~~----~~~~l~~l~~-----------~~~~~~Il~iDdiD~~~ 308 (500)
++||.|+||||||+++++++..+.. ++..+.+.... ..-++...+. ......+|++|||+.+-
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~ 97 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD 97 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence 7999999999999999999998865 47766643211 0111111111 01245799999999852
Q ss_pred cccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---------hhhccCCCeEEEEEcCCcC---
Q 041423 309 DLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---------LWSACGGERLIVFTTNYVE--- 376 (500)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~ivI~TTN~~~--- 376 (500)
..+.+.|++.|+. ..........||+|+|..+
T Consensus 98 ------------------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g 141 (589)
T TIGR02031 98 ------------------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG 141 (589)
T ss_pred ------------------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC
Confidence 2355667777752 1111223467889999875
Q ss_pred cccHHHhcCCeeeEEEEccCC-CHHHHHHHHHHhh
Q 041423 377 KLDPALIRRGRMDKHIELSYC-TFQGFKVLAKNYL 410 (500)
Q Consensus 377 ~lD~aLlr~GR~d~~I~~~~p-~~~~~~~l~~~~l 410 (500)
.|.++|+. ||+++|.+.++ ..++|.+|+++++
T Consensus 142 ~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 142 GLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 79999999 99999999875 4667889988876
No 190
>PRK06526 transposase; Provisional
Probab=98.73 E-value=4.5e-08 Score=95.80 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=43.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC-------ChHHHHHHHHhhcCCeEEEecchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK-------DNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~-------~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+.+++|+||||||||+|+.+|+..+ |..++..+...+- ....+...+.......+|+|||++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 4589999999999999999999875 5555554443321 1112233444455678999999986
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.72 E-value=1.7e-07 Score=95.36 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=94.4
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH-H
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL-R 287 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l-~ 287 (500)
++|.....+++++.+...... ...+||+|++||||+++|++|-... +.+++.++|..+... .+ .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-LLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-HHHH
Confidence 355566666777766655433 3469999999999999999997755 468999999987532 23 2
Q ss_pred HHHH-----------------hhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhH
Q 041423 288 KLLI-----------------ETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSG 350 (500)
Q Consensus 288 ~l~~-----------------~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 350 (500)
.+|+ .......|||||||.+-. .....
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------------------------~~Q~~ 112 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------------------------LVQEK 112 (329)
T ss_pred HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------------------------HHHHH
Confidence 3432 123568999999998521 12233
Q ss_pred HHHHHhhhh-h------ccCCCeEEEEEcCCc-------CcccHHHhcCCee-eEEEEccCCC--HHHHHHHHHHhhc
Q 041423 351 LLNFIDGLW-S------ACGGERLIVFTTNYV-------EKLDPALIRRGRM-DKHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 351 lL~~ldg~~-~------~~~~~~ivI~TTN~~-------~~lD~aLlr~GR~-d~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
|+.+++.-. . ....++-||+|||.. ..+.+.|.. |+ ...|++|+.. .++...|+..|+.
T Consensus 113 Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 113 LLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 455553211 0 011234677777642 345566776 66 3467777766 4666677777764
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.72 E-value=1.5e-07 Score=88.26 Aligned_cols=93 Identities=23% Similarity=0.394 Sum_probs=63.6
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCC----EEEEe
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYD----VYDLE 276 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~----i~~l~ 276 (500)
.-..|..+.+++|.++..+.+-- +..-|-- .++++.|||||||||-+.++|++| |.. +..++
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~v-----------ia~~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSV-----------IAKEGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHH-----------HHHcCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 56678889999999887766521 2222211 269999999999999999999986 422 44566
Q ss_pred ecccCChHHHH---HHHHhhc------CCeEEEecchhch
Q 041423 277 LTAVKDNTELR---KLLIETT------SKSIIVIEDIDCS 307 (500)
Q Consensus 277 l~~~~~~~~l~---~l~~~~~------~~~Il~iDdiD~~ 307 (500)
.++-..-+-++ +.|.+.. ..-|+++||.|+.
T Consensus 86 ASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 86 ASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred CccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 66544434343 4555542 2469999999984
No 193
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.71 E-value=9.2e-08 Score=96.93 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=44.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC---------hHHHHHHHHhhcCCeEEEecchhc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD---------NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~---------~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
.+++||||||||||+|+.|||+++ +..+..++...+-. .......+......-+|+|||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCC
Confidence 689999999999999999999987 66676666554311 111122244445668999999975
No 194
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.9e-07 Score=96.12 Aligned_cols=168 Identities=17% Similarity=0.221 Sum_probs=95.9
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
...+.-+|++.+..+.-.... .....+- ...|. ....++||||.|+|||.|++|++++. +.+...+.++
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~-aa~~~va------~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAY-AAAKAVA------ENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchHHHH-HHHHHHH------hccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 344555899976443322211 1122111 12222 33468999999999999999999976 3322222222
Q ss_pred ccCC-hHHHHH-------HHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhH
Q 041423 279 AVKD-NTELRK-------LLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSG 350 (500)
Q Consensus 279 ~~~~-~~~l~~-------l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 350 (500)
.-.- +..+.. -|.+.-+--+++||||+.+. |.. .+..+
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~---gk~-------------------------------~~qee 196 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLA---GKE-------------------------------RTQEE 196 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhc---CCh-------------------------------hHHHH
Confidence 2110 011111 11111244589999999853 221 13455
Q ss_pred HHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 351 LLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 351 lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
|.+.+..+... ++.||+.+...|.. ++|.|.++--....+++..|+.+.+..+++......
T Consensus 197 fFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 197 FFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 66666655442 23455555455554 458998843445778999999999999988855433
No 195
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.70 E-value=2.2e-07 Score=103.23 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=68.2
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNT 284 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~ 284 (500)
+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+.. +.+++.++|..+....
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 5788888888888887777766543 3469999999999999999998875 4689999999986433
Q ss_pred HHHHHHHhh--------------cCCeEEEecchhch
Q 041423 285 ELRKLLIET--------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 285 ~l~~l~~~~--------------~~~~Il~iDdiD~~ 307 (500)
--..+|+.. ..++.||||||+.+
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l 428 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL 428 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC
Confidence 234555422 24678999999985
No 196
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=1.9e-07 Score=101.49 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=69.1
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCCh
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDN 283 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~ 283 (500)
.+|+.++|.....+++++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 46899999999999998888766543 3469999999999999999999875 568999999988442
Q ss_pred HHHHHHHHh-----------------hcCCeEEEecchhch
Q 041423 284 TELRKLLIE-----------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 284 ~~l~~l~~~-----------------~~~~~Il~iDdiD~~ 307 (500)
.--..+|+. ...+..|||||||.+
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L 302 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI 302 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC
Confidence 212233331 234678999999985
No 197
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=4.6e-07 Score=92.27 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=88.2
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhC------------------------CCEEEEeecc---cCChHHHHHHHHhh--
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLN------------------------YDVYDLELTA---VKDNTELRKLLIET-- 293 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~l~~---~~~~~~l~~l~~~~-- 293 (500)
.+.+|||+||+|+||+++|.++|..+- ++++.+.... .-.-+.++.+....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 345899999999999999999999772 2344443321 11334555555443
Q ss_pred -c---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEE
Q 041423 294 -T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIV 369 (500)
Q Consensus 294 -~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI 369 (500)
+ ..-|++||++|.+- ...-+.||..|+. .+++.++|
T Consensus 103 ~~~~g~~kV~iI~~ae~m~------------------------------------~~AaNaLLKtLEE----Pp~~t~fi 142 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT------------------------------------DAAANALLKTLEE----PPENTWFF 142 (334)
T ss_pred ccccCCceEEEEcchHhhC------------------------------------HHHHHHHHHHhcC----CCCCeEEE
Confidence 2 35699999998842 2245667777764 35678999
Q ss_pred EEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 370 FTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 370 ~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
++|++++.|-|.+++++.. +.|+.|+.++....+..
T Consensus 143 L~t~~~~~lLpTIrSRCq~---~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 143 LACREPARLLATLRSRCRL---HYLAPPPEQYALTWLSR 178 (334)
T ss_pred EEECChhhChHHHHhcccc---ccCCCCCHHHHHHHHHH
Confidence 9999999999999995554 89999998887766544
No 198
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.69 E-value=2.8e-07 Score=93.90 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=100.9
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee--------
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL-------- 277 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l-------- 277 (500)
.-+|.-++|++..|..|.-...... =.|+|+-|+.||||||+++|||..|..-.....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P~-------------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDPQ-------------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcccc-------------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 3467888999999988865432222 1379999999999999999999988432222121
Q ss_pred ------------------------------cccCChH------HHHHHHHh-----------hcCCeEEEecchhchhcc
Q 041423 278 ------------------------------TAVKDNT------ELRKLLIE-----------TTSKSIIVIEDIDCSLDL 310 (500)
Q Consensus 278 ------------------------------~~~~~~~------~l~~l~~~-----------~~~~~Il~iDdiD~~~~~ 310 (500)
....+.+ ++.+.+.. ..++.|+++||+..+-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 1011111 11222211 1246899999997642
Q ss_pred cCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH---------hhhhhccCCCeEEEEEcCCc-CcccH
Q 041423 311 TGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI---------DGLWSACGGERLIVFTTNYV-EKLDP 380 (500)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l---------dg~~~~~~~~~ivI~TTN~~-~~lD~ 380 (500)
......||+.+ +|+.-..+-++++|+|+|.- ..|-|
T Consensus 158 ----------------------------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrp 203 (423)
T COG1239 158 ----------------------------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRP 203 (423)
T ss_pred ----------------------------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccch
Confidence 12334455444 34433334567999999965 46889
Q ss_pred HHhcCCeeeEEEEccCCC-HHHHHHHHHHhhc
Q 041423 381 ALIRRGRMDKHIELSYCT-FQGFKVLAKNYLN 411 (500)
Q Consensus 381 aLlr~GR~d~~I~~~~p~-~~~~~~l~~~~l~ 411 (500)
-|+. ||..+|...+|. .+++.+|.++-+.
T Consensus 204 qLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 204 QLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred hhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 9999 999999998886 6788888777654
No 199
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.69 E-value=4e-07 Score=97.54 Aligned_cols=69 Identities=30% Similarity=0.446 Sum_probs=51.2
Q ss_pred cCceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 196 TMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 196 ~~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
..|. .-..|.+.++|+......+++...+...+. +...++-+||+|||||||||+++++|+++++.+..
T Consensus 7 ~~W~--~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 7 EPWV--EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred Cccc--hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 3564 456899999999987665555554443221 23344567899999999999999999999998875
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.3e-07 Score=92.55 Aligned_cols=88 Identities=26% Similarity=0.470 Sum_probs=56.5
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC-----
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD----- 282 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~----- 282 (500)
++-+.+...+.....+..+... |. -+.+++||||||+|||.|+.|||+++ |.+++.+...++-.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~---~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEF---FE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHH---hc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 3444455555555555544432 22 34589999999999999999999987 56677776665411
Q ss_pred --hHHH-HHHHHhhcCCeEEEecchhc
Q 041423 283 --NTEL-RKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 283 --~~~l-~~l~~~~~~~~Il~iDdiD~ 306 (500)
.... .++.......-+|+|||+-.
T Consensus 152 ~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 152 FDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred HhcCchHHHHHHHhhcCCEEEEecccC
Confidence 0111 22333356678999999964
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=5.4e-07 Score=90.87 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=83.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC---------------------CEEEEe--eccc-------CChHHHHHHHHh
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY---------------------DVYDLE--LTAV-------KDNTELRKLLIE 292 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~---------------------~i~~l~--l~~~-------~~~~~l~~l~~~ 292 (500)
.+.+|||+||+|+||+++|.++|..+-. +++.+. ...- -.-+.++.+...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 3458999999999999999999986632 233332 1100 012344444433
Q ss_pred hc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCe
Q 041423 293 TT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGER 366 (500)
Q Consensus 293 ~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ 366 (500)
.. ..-|++||++|.+ +...-+.||..++.- +.+.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m------------------------------------~~~AaNaLLKtLEEP----p~~~ 144 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI------------------------------------NRAACNALLKTLEEP----SPGR 144 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh------------------------------------CHHHHHHHHHHhhCC----CCCC
Confidence 22 2357788888774 123456788777753 4567
Q ss_pred EEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 367 LIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 367 ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
++|++|+.++.|-|.++++++. |.|+.|+.++....+..
T Consensus 145 ~fiL~~~~~~~lLpTIrSRCq~---i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 145 YLWLISAQPARLPATIRSRCQR---LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEEEEECChhhCchHHHhhheE---eeCCCcCHHHHHHHHHH
Confidence 8999999999999999996655 99999998877666554
No 202
>PRK06921 hypothetical protein; Provisional
Probab=98.68 E-value=1.5e-07 Score=92.84 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=43.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecccCC-----hHHHHHHHHhhcCCeEEEecchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTAVKD-----NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~~~~-----~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
..+++|+||||||||+|+.|||+++ +..++.++...+-. ...+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4589999999999999999999986 45566665543210 011223334445678999999954
No 203
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.67 E-value=4.8e-07 Score=91.04 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=44.2
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC--CCEEEEeeccc
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN--YDVYDLELTAV 280 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~l~~~ 280 (500)
.+.++|+.+.++.. -.+.+..+. |.--.|++||.||||||||.||-+||.+|| .||..++.+.+
T Consensus 23 ~~GlVGQ~~AReAa-giiv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAA-GIIVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHH-HHHHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHH-HHHHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 46799999988876 334334433 333467999999999999999999999997 55666666655
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=3.3e-07 Score=92.55 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC------------------------CEEEEeecc--cCChHHHHHHHHhhc--
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY------------------------DVYDLELTA--VKDNTELRKLLIETT-- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~i~~l~l~~--~~~~~~l~~l~~~~~-- 294 (500)
.+.+|||+||+|+||+++|.++|..+-. +++.+.... .-.-+.++.+.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3458999999999999999999997632 244443211 113345555544332
Q ss_pred ----CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEE
Q 041423 295 ----SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF 370 (500)
Q Consensus 295 ----~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~ 370 (500)
..-|++||++|.+- ...-+.||..++. .+++.++|+
T Consensus 103 ~~~g~~KV~iI~~a~~m~------------------------------------~~AaNaLLKtLEE----Pp~~~~fiL 142 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT------------------------------------EAAANALLKTLEE----PRPNTYFLL 142 (325)
T ss_pred cccCCceEEEEechhhhC------------------------------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 34688889888741 2345667777764 356789999
Q ss_pred EcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 371 TTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 371 TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
+|++++.|.|.+++++.. +.|+.|+.++..+.+...
T Consensus 143 ~t~~~~~llpTI~SRC~~---~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 143 QADLSAALLPTIYSRCQT---WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EECChHhCchHHHhhceE---EeCCCCCHHHHHHHHHHH
Confidence 999999999999995555 999999988877665543
No 205
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.66 E-value=1e-06 Score=82.37 Aligned_cols=134 Identities=18% Similarity=0.263 Sum_probs=84.2
Q ss_pred CccHHHHHHHHHhcccc-ccccCceEEeecCCCCCe------EEeecC------CCce-ecccCCeeEEEEEee-----e
Q 041423 67 KRSEAYAAVEAYLSVNS-SKSAKRLKAEMGKDSSNL------VLSMDE------YERV-TDEFRGVKVWWVSSK-----V 127 (500)
Q Consensus 67 ~~ne~Y~~~~~yLs~~~-~~~~~~l~v~~~~~s~~~------~~~~~~------~~~v-~d~f~g~~~~W~~~~-----~ 127 (500)
+.|++|+|++.||+.++ ...++++.|.+...+... ..+.+. .-.+ .-...|.++.|++.. +
T Consensus 33 ~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G~h~F~y~G~~~~~~R 112 (187)
T PF08740_consen 33 SDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPGTHWFWYKGRWFWFSR 112 (187)
T ss_pred CCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCCCEEEEECCEEEEEEE
Confidence 37999999999999999 577899999886543210 000000 0000 001245555555542 2
Q ss_pred ccccCccccCCCCcceEEEEEEeccchhHHHHHhHHHHHHHhHHHHHHHhhcc--cccCCCCCCCCCccccCceeecccC
Q 041423 128 VSTTRGMSYYPEQEKRYYRLTFHKRYREIITESYLQHVVKEGKEIRVRNRQRK--LYTNSPGYKWPSYKQTMWSHIVFEH 205 (500)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~ 205 (500)
.......+...+.+.+.++|+...++++. |..++++++....++.+.+ ||...+.+ ..|..+.-.+
T Consensus 113 ~~~~~~~~~~~~~~~e~l~l~~lg~s~~~-----l~~ll~ear~~~~~~~~~~t~Iy~~~~~~-------~~W~~~~~r~ 180 (187)
T PF08740_consen 113 QRESNSYNSWTGAPDETLTLSCLGRSPKP-----LKDLLEEAREYYLKKQKGKTTIYRADGSE-------YRWRRVASRP 180 (187)
T ss_pred EeccccccccCCCCceEEEEEEecCCHHH-----HHHHHHHHHHHHHHhcCCcEEEEeCCCCC-------CCCcCCCCcC
Confidence 22222111111245789999999998875 6788889998887766654 78875432 1588888888
Q ss_pred CCccccc
Q 041423 206 PATFETM 212 (500)
Q Consensus 206 ~~~~~~l 212 (500)
++++++|
T Consensus 181 ~RplsTV 187 (187)
T PF08740_consen 181 KRPLSTV 187 (187)
T ss_pred CCCCCCC
Confidence 9999886
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.65 E-value=3.3e-08 Score=91.68 Aligned_cols=63 Identities=27% Similarity=0.575 Sum_probs=45.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc-------CChHHHHHHHHhhcCCeEEEecchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV-------KDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~-------~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+.|++|+||||||||.||.||++++ +.++..++...+ .......+++.......+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 4689999999999999999999876 777777776654 11223345566666788999999954
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.3e-07 Score=91.47 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=87.9
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhC-----------------------CCEEEEeecc---cCChHHHHHHHHhh---
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLN-----------------------YDVYDLELTA---VKDNTELRKLLIET--- 293 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~-----------------------~~i~~l~l~~---~~~~~~l~~l~~~~--- 293 (500)
.+.+|||+||.|+||+++|.++|..+- ++++.+.... .-.-+.++.+....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 345899999999999999999998762 2455554321 11334555543332
Q ss_pred c---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEE
Q 041423 294 T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF 370 (500)
Q Consensus 294 ~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~ 370 (500)
+ ..-|++||++|.+- ...-+.||..++. .+.+.++|+
T Consensus 104 ~~~~~~kV~iI~~ae~m~------------------------------------~~AaNaLLKtLEE----Pp~~t~fiL 143 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMN------------------------------------ESASNALLKTLEE----PAPNCLFLL 143 (319)
T ss_pred cccCCceEEEecchhhhC------------------------------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 2 24688899998741 2345678888775 356689999
Q ss_pred EcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 371 TTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 371 TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
+|++++.|-|.++++++. +.|+.|+.++..+.+..
T Consensus 144 ~t~~~~~lLpTI~SRCq~---~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHNQKRLLPTIVSRCQQ---WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECChhhChHHHHhccee---EeCCCCCHHHHHHHHHH
Confidence 999999999999996555 99999998887766543
No 208
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=1.5e-07 Score=100.45 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=35.7
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
..|+++.|+...++.+.-.+ .....++|+||||||||++++++++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999887765542211 123469999999999999999999865
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.57 E-value=5.5e-07 Score=96.84 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=69.1
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHH-----------hCCCEEEE
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL-----------LNYDVYDL 275 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~-----------l~~~i~~l 275 (500)
.+|++++|.....+.+.+.+..+-.. ...+||+|++||||+++|++|-+. -+.|++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46899999999888888887766654 347999999999999999999877 46789999
Q ss_pred eecccCChHHHHHHHHh------------------hcCCeEEEecchhch
Q 041423 276 ELTAVKDNTELRKLLIE------------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 276 ~l~~~~~~~~l~~l~~~------------------~~~~~Il~iDdiD~~ 307 (500)
+|..+....--..+|+. ......||||||+.+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 334 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 334 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhC
Confidence 99988543222334431 234578999999985
No 210
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.57 E-value=1.7e-06 Score=83.34 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=54.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhc-CCeEEEecchhch
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETT-SKSIIVIEDIDCS 307 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~-~~~Il~iDdiD~~ 307 (500)
..|-.++||+|||||.+++++|..+|.+++..+|+...+...+.++|..+. ..+-++|||++++
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRL 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhh
Confidence 346789999999999999999999999999999999989999999986665 6899999999985
No 211
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.56 E-value=3e-07 Score=94.41 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=106.9
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHH----hCCCEEEEeecccC
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL----LNYDVYDLELTAVK 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~l~~~~ 281 (500)
...+++|+|....-+++++.++.+-. -...+|++|++||||+.+|+.|... .+.|++.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap-----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP-----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC-----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 44689999999999999898876332 2346999999999999999988753 36689999999998
Q ss_pred ChHHHHHHHHhh-----------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcc
Q 041423 282 DNTELRKLLIET-----------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSS 344 (500)
Q Consensus 282 ~~~~l~~l~~~~-----------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
.+.....+|+.. ....+||+|||..+- ..
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP-~~--------------------------------- 188 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP-PE--------------------------------- 188 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCC-Hh---------------------------------
Confidence 777776677533 236899999998752 11
Q ss_pred hhcHhHHHHHHhh-----hhh--ccCCCeEEEEEcCC-c-CcccH--HHhcCCeeeEEEEccCCC--HHHHHHHHHHhhc
Q 041423 345 KVTLSGLLNFIDG-----LWS--ACGGERLIVFTTNY-V-EKLDP--ALIRRGRMDKHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 345 ~~~ls~lL~~ldg-----~~~--~~~~~~ivI~TTN~-~-~~lD~--aLlr~GR~d~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
....|+.+||. +.+ ....++-+|++||. + +.+-. .|.++ |+...|++|+.. .+++..++..|+.
T Consensus 189 --~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 189 --GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred --HHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHH
Confidence 12336666663 111 11234556666653 2 22222 34433 677888888776 4566677777775
No 212
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.56 E-value=8.5e-07 Score=95.41 Aligned_cols=92 Identities=14% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~ 281 (500)
...+|++++|.....+.+.+.+..+-.. ...+||+|++||||+++|++|-+.. +.|++.++|..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 3457899999999888888888766654 3479999999999999999998754 5689999999885
Q ss_pred ChHHHHHHHH------------------hhcCCeEEEecchhch
Q 041423 282 DNTELRKLLI------------------ETTSKSIIVIEDIDCS 307 (500)
Q Consensus 282 ~~~~l~~l~~------------------~~~~~~Il~iDdiD~~ 307 (500)
...--..+|+ +......||||||+.+
T Consensus 276 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 319 (526)
T TIGR02329 276 ESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM 319 (526)
T ss_pred hhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC
Confidence 4322233443 1234678999999985
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.55 E-value=3.1e-07 Score=81.47 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC---CEEEEeecccCChHHHHHHH
Q 041423 214 LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY---DVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 214 ~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~l~~~~~~~~l~~l~ 290 (500)
|.....+++.+.+...... ...+||+|+|||||+++|++|....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 4455666777777666543 346999999999999999999997754 34445555433 3344
Q ss_pred HhhcCCeEEEecchhch
Q 041423 291 IETTSKSIIVIEDIDCS 307 (500)
Q Consensus 291 ~~~~~~~Il~iDdiD~~ 307 (500)
.. ..+..|+|+|||.+
T Consensus 66 ~~-a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 66 EQ-AKGGTLYLKNIDRL 81 (138)
T ss_dssp HH-CTTSEEEEECGCCS
T ss_pred HH-cCCCEEEECChHHC
Confidence 44 37889999999985
No 214
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.55 E-value=3.2e-07 Score=97.60 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=85.7
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEE--EEeecccC----
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVY--DLELTAVK---- 281 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~--~l~l~~~~---- 281 (500)
.|..+.|+...++.+. +.......++|+||||||||++++.|++.+...-. .++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~---------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLE---------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhh---------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 6777777655544431 11122356999999999999999999997753311 11111110
Q ss_pred -----------------ChHHHHHHHHh----------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh
Q 041423 282 -----------------DNTELRKLLIE----------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS 334 (500)
Q Consensus 282 -----------------~~~~l~~l~~~----------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (500)
.......+++. .....+||+||++.+-
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~-------------------------- 307 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE-------------------------- 307 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------------------------
Confidence 00111223322 2357899999998631
Q ss_pred ccCCCCCCcchhcHhHHHHHHhh-hh--------hccCCCeEEEEEcCCcC---------------------cccHHHhc
Q 041423 335 RKEPKEEGSSKVTLSGLLNFIDG-LW--------SACGGERLIVFTTNYVE---------------------KLDPALIR 384 (500)
Q Consensus 335 ~~~~~~~~~~~~~ls~lL~~ldg-~~--------~~~~~~~ivI~TTN~~~---------------------~lD~aLlr 384 (500)
...+..|++.|+. -. .....+..+|+|+|... +|..+++.
T Consensus 308 ----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD 377 (506)
T PRK09862 308 ----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD 377 (506)
T ss_pred ----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh
Confidence 2345555655531 11 01123568999999753 57789999
Q ss_pred CCeeeEEEEccCCCHH
Q 041423 385 RGRMDKHIELSYCTFQ 400 (500)
Q Consensus 385 ~GR~d~~I~~~~p~~~ 400 (500)
|||.++.+++++.+
T Consensus 378 --RfdL~v~v~~~~~~ 391 (506)
T PRK09862 378 --RFDLSLEIPLPPPG 391 (506)
T ss_pred --hccEEEEeCCCCHH
Confidence 99999999999876
No 215
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.53 E-value=7.6e-06 Score=80.73 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=32.3
Q ss_pred CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 214 LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 214 ~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
......++++..+...+.. .+.-++|+||||+|||++++.+++.+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~----------~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQ----------REGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCCHHHHHHHHHHHHHHhc----------CCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 3444555555555543332 1224789999999999999999999863
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.1e-06 Score=84.68 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=48.5
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhh-CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARI-GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
++|+.+.|+.+.=.+..-+++...-..+ .--.|+++|..||.|.|||-+|+.+|...+.||+-+..+.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 6788999988765555444332211111 1224679999999999999999999999999988775543
No 217
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.6e-08 Score=98.93 Aligned_cols=48 Identities=29% Similarity=0.458 Sum_probs=39.4
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
...|.+|+|++..|+.+.-.. .-.+++|++||||||||++++.+.+.|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 457999999999998874322 235689999999999999999998866
No 218
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.52 E-value=1.1e-07 Score=80.57 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=38.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+.||||||+|||++++.||..+...+.......+-....-.+.+.......++++||+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~ 60 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQ 60 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCc
Confidence 479999999999999999987753331111111101111234455666788999999976
No 219
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=8.5e-07 Score=77.58 Aligned_cols=63 Identities=25% Similarity=0.460 Sum_probs=47.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC--CCEEEEeecccCChH----HHHHHHHhh--cCCeEEEecchhch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN--YDVYDLELTAVKDNT----ELRKLLIET--TSKSIIVIEDIDCS 307 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~l~~~~~~~----~l~~l~~~~--~~~~Il~iDdiD~~ 307 (500)
+.++|+||+|+||||+++.++..+. .++..+++....... ++.+.+.+. +.+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999998887 778888887763321 133444433 36799999999873
No 220
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47 E-value=2.6e-06 Score=92.14 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~ 281 (500)
...+|++++|.....+++++.+...... ...+||+|++||||+++|+++-... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3457899999988888888877655442 3369999999999999999986553 4689999999875
Q ss_pred ChHHHHHHHHh-----------------hcCCeEEEecchhch
Q 041423 282 DNTELRKLLIE-----------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 282 ~~~~l~~l~~~-----------------~~~~~Il~iDdiD~~ 307 (500)
...--..+|+. ......|||||||.+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L 310 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM 310 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC
Confidence 43222334432 134678999999985
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.47 E-value=2.5e-06 Score=95.57 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=67.9
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCCh
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDN 283 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~ 283 (500)
..|++++|.....+.+++.+..+... ...+||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46889999999999998888776543 3479999999999999999998764 568999999987432
Q ss_pred HHHHHHHH-----------------hhcCCeEEEecchhch
Q 041423 284 TELRKLLI-----------------ETTSKSIIVIEDIDCS 307 (500)
Q Consensus 284 ~~l~~l~~-----------------~~~~~~Il~iDdiD~~ 307 (500)
.--..+|+ +...++.||||||+.+
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 11112222 2335689999999985
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=98.46 E-value=4.8e-07 Score=89.02 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC-------hHHHHHHHHh-hcCCeEEEecchhc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD-------NTELRKLLIE-TTSKSIIVIEDIDC 306 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~-------~~~l~~l~~~-~~~~~Il~iDdiD~ 306 (500)
..+++|+||||||||+|+.+++..+ |..+..++...+.. ...+...+.. ...+.+++|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEccccc
Confidence 3579999999999999999998764 66666666544310 1123334433 45678999999975
No 223
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.39 E-value=4e-06 Score=90.53 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=67.6
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNT 284 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~ 284 (500)
.+.+++|.....+++.+.+...-.. ...+||+|++||||+++|++|.... +.+++.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4678999999998888888765543 4479999999999999999998874 5689999999885422
Q ss_pred HHHHHHHh-----------------hcCCeEEEecchhch
Q 041423 285 ELRKLLIE-----------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 285 ~l~~l~~~-----------------~~~~~Il~iDdiD~~ 307 (500)
--..+|+. ...+..|||||||.+
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 11234431 234678999999985
No 224
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.38 E-value=2.3e-05 Score=76.01 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=37.9
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
..++|+...++.. -.+.+.++.+ .-..|++||-||||||||.||-+|+.+||..
T Consensus 38 ~g~vGQ~~AReAa-giivdlik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 38 AGFVGQENAREAA-GIIVDLIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred cccccchhhhhhh-hHHHHHHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCC
Confidence 4567887777653 2333333321 1235789999999999999999999999764
No 225
>PHA02624 large T antigen; Provisional
Probab=98.36 E-value=1.9e-06 Score=92.14 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=79.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAE 319 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~ 319 (500)
|+|.++.++||||||||||+++.+|++.|+-.+..++... +.+.-.++-+...-+.+|||+-.-+- ...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~---~~~---- 495 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPA---DNK---- 495 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeecccccc---ccc----
Confidence 5788889999999999999999999999966665555332 34555566666778999999964210 000
Q ss_pred ccchHHHhhhhhhhhccCCCCCCcchh-cHhHHHHHHhhhhhcc----C-CC-----eEEEEEcCCcCcccHHHhcCCee
Q 041423 320 KSSDDEKEKLDKEISRKEPKEEGSSKV-TLSGLLNFIDGLWSAC----G-GE-----RLIVFTTNYVEKLDPALIRRGRM 388 (500)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ls~lL~~ldg~~~~~----~-~~-----~ivI~TTN~~~~lD~aLlr~GR~ 388 (500)
. -.+.... .+..|.|.+||--.-+ . .. .-.|.|||. ..|+..|.- ||
T Consensus 496 ------------~-------Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf 553 (647)
T PHA02624 496 ------------D-------LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RF 553 (647)
T ss_pred ------------c-------CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HH
Confidence 0 0001111 2566778888751000 0 01 126678887 457888877 88
Q ss_pred eEEEEcc
Q 041423 389 DKHIELS 395 (500)
Q Consensus 389 d~~I~~~ 395 (500)
-..+.|.
T Consensus 554 ~~~~~F~ 560 (647)
T PHA02624 554 AKVLDFK 560 (647)
T ss_pred HHhcccc
Confidence 8878886
No 226
>PHA00729 NTP-binding motif containing protein
Probab=98.33 E-value=1.7e-06 Score=82.46 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
.++|+||||||||+||.+||..++..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 699999999999999999999886433
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.32 E-value=6e-06 Score=78.91 Aligned_cols=134 Identities=27% Similarity=0.358 Sum_probs=69.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCE----EEEeecccC--------------------------------------
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDV----YDLELTAVK-------------------------------------- 281 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i----~~l~l~~~~-------------------------------------- 281 (500)
...++|+||+|+|||+|++.+.+.+...- |...+....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 34799999999999999999999884321 111111100
Q ss_pred --ChHHHHHHHHhh---cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 --DNTELRKLLIET---TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 --~~~~l~~l~~~~---~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....+..++... ..+.||+|||++.+. . + .......+..|.+.++
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~-~----------------------------~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-I-A----------------------------SEEDKDFLKSLRSLLD 149 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-B-C----------------------------TTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-h-c----------------------------ccchHHHHHHHHHHHh
Confidence 011122222222 235899999999864 1 0 0112345566777777
Q ss_pred hhhhccCCCeEEEEEcCCcCcc------cHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 357 GLWSACGGERLIVFTTNYVEKL------DPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~l------D~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.... ..++.+|+++...... ...+. +|+.. +.+++.+.++..+++...+..
T Consensus 150 ~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 150 SLLS--QQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp H------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHC
T ss_pred hccc--cCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHH
Confidence 6433 2334444444332211 11232 47877 999999999999998886543
No 228
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.31 E-value=9.9e-06 Score=78.09 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=102.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCCEE---------
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYDVY--------- 273 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~--------- 273 (500)
..|.+++.+....+....+..... .+ .. ..+++|||+|+||-|.+-++-+++ |.-+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~-----------~~-d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS-----------TG-DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc-----------cC-CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 357778888777666665533211 01 11 279999999999999999999877 21111
Q ss_pred -------------------EEeecccCC--hHHHHHHHHhhcC-----------CeEEEecchhchhcccCcchhhhccc
Q 041423 274 -------------------DLELTAVKD--NTELRKLLIETTS-----------KSIIVIEDIDCSLDLTGQRKKKAEKS 321 (500)
Q Consensus 274 -------------------~l~l~~~~~--~~~l~~l~~~~~~-----------~~Il~iDdiD~~~~~~g~~~~~~~~~ 321 (500)
.++.++.+. .--+++++.+.++ --+++|-|+|.+-
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------------- 140 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------------- 140 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------------
Confidence 112222221 1123455544432 2578889988752
Q ss_pred chHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHH
Q 041423 322 SDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQG 401 (500)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~ 401 (500)
+-...+|...|+.+.+.| -+|+.+|....+-+++..++-+ |.+|.|+.++
T Consensus 141 -----------------------~dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrSRCl~---iRvpaps~ee 190 (351)
T KOG2035|consen 141 -----------------------RDAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRSRCLF---IRVPAPSDEE 190 (351)
T ss_pred -----------------------HHHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhhheeE---EeCCCCCHHH
Confidence 113345666777775554 5788899999999999996666 9999999999
Q ss_pred HHHHHHHhhccccch
Q 041423 402 FKVLAKNYLNVETHT 416 (500)
Q Consensus 402 ~~~l~~~~l~~~~~~ 416 (500)
...++...+..+...
T Consensus 191 I~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 191 ITSVLSKVLKKEGLQ 205 (351)
T ss_pred HHHHHHHHHHHhccc
Confidence 999988888655433
No 229
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.31 E-value=2.2e-05 Score=92.96 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=43.8
Q ss_pred eecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 200 HIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.+...++..++.++|.+...+++...+. .+....+-+.++||+|+||||||+++++.+..+
T Consensus 174 ~l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 174 KLNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred hhccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3445566778899998877777754432 122234568899999999999999999877443
No 230
>PF05729 NACHT: NACHT domain
Probab=98.31 E-value=9.3e-06 Score=73.38 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
|-++|+|+||+|||++++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 347899999999999999999866
No 231
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.2e-06 Score=92.68 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=61.4
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCC-cccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC---
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKA-WKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD--- 282 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~--- 282 (500)
+.|+|+++....|.+.|.....+ .+.+ +.-.++|.||.|+|||-||+|+|.++ .-.++.++++....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 34678888888887777655432 1222 33348999999999999999999987 33478888886321
Q ss_pred ----------hHHHHHHHHhhc--CCeEEEecchhc
Q 041423 283 ----------NTELRKLLIETT--SKSIIVIEDIDC 306 (500)
Q Consensus 283 ----------~~~l~~l~~~~~--~~~Il~iDdiD~ 306 (500)
....-.+..... ..+||+|||||.
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 112223333333 459999999997
No 232
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.26 E-value=2e-06 Score=88.27 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=60.7
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCC-EEEEeeccc-----------C-ChHHHHHHHHhhcCC-eEEEecchh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD-VYDLELTAV-----------K-DNTELRKLLIETTSK-SIIVIEDID 305 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~l~~~-----------~-~~~~l~~l~~~~~~~-~Il~iDdiD 305 (500)
..+.++|++||||+|+|||+|+-...+.+... -..+-.... . ....+..+.....+. .+|+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 34678999999999999999999998877541 001110000 0 111233333344444 499999998
Q ss_pred chhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc
Q 041423 306 CSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV 375 (500)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~ 375 (500)
. .+......+..|+..+ + ..++++|+|+|.+
T Consensus 138 V---------------------------------~DiaDAmil~rLf~~l---~---~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 V---------------------------------TDIADAMILKRLFEAL---F---KRGVVLVATSNRP 168 (362)
T ss_pred c---------------------------------cchhHHHHHHHHHHHH---H---HCCCEEEecCCCC
Confidence 6 3334456667676654 2 2558999999954
No 233
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.25 E-value=5e-06 Score=92.94 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=76.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC-------EEEEeecccCC-hH------HHHHHHHhhcCCeEEEecchhchhccc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD-------VYDLELTAVKD-NT------ELRKLLIETTSKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~-------i~~l~l~~~~~-~~------~l~~l~~~~~~~~Il~iDdiD~~~~~~ 311 (500)
.+||.|+||||||.++++++...... ...++++.... .. .+..-....+...+++|||+|.+-
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms--- 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCH--- 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCC---
Confidence 49999999999999999999865433 23333333210 00 000000112346899999999842
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---------hhhccCCCeEEEEEcCCcC------
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---------LWSACGGERLIVFTTNYVE------ 376 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~ivI~TTN~~~------ 376 (500)
....+.|+..|+. +...-.....||+|+|..+
T Consensus 571 ---------------------------------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~ 617 (915)
T PTZ00111 571 ---------------------------------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKN 617 (915)
T ss_pred ---------------------------------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcc
Confidence 1123445555531 1111123467999999752
Q ss_pred -------cccHHHhcCCeeeEEE-EccCCCHHHHHHHHHHhh
Q 041423 377 -------KLDPALIRRGRMDKHI-ELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 377 -------~lD~aLlr~GR~d~~I-~~~~p~~~~~~~l~~~~l 410 (500)
.|+++|+. |||... -++.|+.+.=+.|+.+.+
T Consensus 618 ~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 618 KAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 36789999 999764 567788766566655544
No 234
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.1e-05 Score=77.96 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=76.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhC----------------CCEEEEeeccc---CChHHHHHHHHhhc------CCe
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLN----------------YDVYDLELTAV---KDNTELRKLLIETT------SKS 297 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~----------------~~i~~l~l~~~---~~~~~l~~l~~~~~------~~~ 297 (500)
.+..|||+||+|+||+++|.++|..+- ++++.+....- -.-+.++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 345899999999999999999998763 33544432211 12334555444432 245
Q ss_pred EEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCc
Q 041423 298 IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEK 377 (500)
Q Consensus 298 Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~ 377 (500)
|++||++|.+- ...-+.||..++.- +++.++|++|+.++.
T Consensus 98 v~ii~~ad~mt------------------------------------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ 137 (290)
T PRK05917 98 IYIIHEADRMT------------------------------------LDAISAFLKVLEDP----PQHGVIILTSAKPQR 137 (290)
T ss_pred EEEEechhhcC------------------------------------HHHHHHHHHHhhcC----CCCeEEEEEeCChhh
Confidence 88889998742 22456688887753 567899999999999
Q ss_pred ccHHHhcCCeeeEEEEccCC
Q 041423 378 LDPALIRRGRMDKHIELSYC 397 (500)
Q Consensus 378 lD~aLlr~GR~d~~I~~~~p 397 (500)
|.|.+++++.. +.|+.+
T Consensus 138 ll~TI~SRcq~---~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSLS---IHIPME 154 (290)
T ss_pred CcHHHHhcceE---EEccch
Confidence 99999985444 777654
No 235
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.23 E-value=3.8e-05 Score=80.43 Aligned_cols=72 Identities=29% Similarity=0.410 Sum_probs=48.6
Q ss_pred cCceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 196 TMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 196 ~~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
..|. .--.|++.++|+.......++ +.|+.. -.... .....+-+||.||+||||||+++.||.++|+.+..-
T Consensus 70 elW~--eKy~P~t~eeLAVHkkKI~eV----k~WL~~-~~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 70 ELWV--EKYKPRTLEELAVHKKKISEV----KQWLKQ-VAEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred chhH--HhcCcccHHHHhhhHHhHHHH----HHHHHH-HHHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 3564 455789999999875554444 444441 00111 112234588999999999999999999999988753
No 236
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.3e-06 Score=83.49 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=85.7
Q ss_pred CCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--Ch-HHHHHHHHhhc-CCeEEEecchhchhcccCc
Q 041423 240 GKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--DN-TELRKLLIETT-SKSIIVIEDIDCSLDLTGQ 313 (500)
Q Consensus 240 g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--~~-~~l~~l~~~~~-~~~Il~iDdiD~~~~~~g~ 313 (500)
......| +.|.||+|||||||.+.||+...+.-..+.+..-. .+ .+..-+|.+.. -|..-++|++-..+...|.
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 3334445 78999999999999999999998887766554421 11 01111111111 1344467777766655553
Q ss_pred chhhhcccchHHHhhhhhhhhccCC-----------------------------CCCCcchhcHhHHHHHHhhhhhccCC
Q 041423 314 RKKKAEKSSDDEKEKLDKEISRKEP-----------------------------KEEGSSKVTLSGLLNFIDGLWSACGG 364 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~ls~lL~~ldg~~~~~~~ 364 (500)
.+.+....+.+.++.++.....+.. +-..-...|-..+.+.+-.+|.. .
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~ 180 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE--T 180 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--h
Confidence 3332333344444444332221110 01223345666677777778875 3
Q ss_pred CeEEEEEcCCcCcccHHHh----------cCCeeeEEEEccCCC
Q 041423 365 ERLIVFTTNYVEKLDPALI----------RRGRMDKHIELSYCT 398 (500)
Q Consensus 365 ~~ivI~TTN~~~~lD~aLl----------r~GR~d~~I~~~~p~ 398 (500)
+..+++.|+++ ++|+. |||++-..+.++.|.
T Consensus 181 ~~TvllVTHdi---~EAv~LsdRivvl~~~P~~i~~~~~i~l~r 221 (248)
T COG1116 181 RKTVLLVTHDV---DEAVYLADRVVVLSNRPGRIGEELEIDLPR 221 (248)
T ss_pred CCEEEEEeCCH---HHHHhhhCEEEEecCCCcceeeEEecCCCC
Confidence 47888889874 45544 667775555555553
No 237
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.22 E-value=1.9e-05 Score=86.74 Aligned_cols=50 Identities=34% Similarity=0.384 Sum_probs=39.4
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
..++.++|+++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 457888998887776644332 12489999999999999999999999765
No 238
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=4.1e-06 Score=72.97 Aligned_cols=39 Identities=33% Similarity=0.566 Sum_probs=30.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh--------CCCEEEEeecccCCh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL--------NYDVYDLELTAVKDN 283 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l--------~~~i~~l~l~~~~~~ 283 (500)
+.++++||||+|||++++.++..+ +.+++.+++....+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTP 51 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCH
Confidence 458899999999999999999987 677888877765433
No 239
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.19 E-value=1.5e-05 Score=85.33 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=95.0
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHH
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTE 285 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~ 285 (500)
+.++++.....+.+.+.+...... ...+++.|++|||||++|+++.... +.+++.++|..+....-
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS-----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc-----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 456777776666666655433322 3469999999999999999999876 46899999998843322
Q ss_pred HHHHHHh-----------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 286 LRKLLIE-----------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 286 l~~l~~~-----------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
-..+|+. ...+..|||||||.+-. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------------------------~~q 249 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------------------------DVQ 249 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------------------------HHH
Confidence 2334432 12357899999998521 122
Q ss_pred hHHHHHHhhhhhcc-C------CCeEEEEEcCCc-------CcccHHHhcCCee-eEEEEccCCC--HHHHHHHHHHhhc
Q 041423 349 SGLLNFIDGLWSAC-G------GERLIVFTTNYV-------EKLDPALIRRGRM-DKHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 349 s~lL~~ldg~~~~~-~------~~~ivI~TTN~~-------~~lD~aLlr~GR~-d~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
..|+.+++.-.-.. + -++-||+||+.. ..+.+.|.. |+ ...|++|+.. .+....|+..|+.
T Consensus 250 ~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 250 TRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred HHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 34555554211000 0 123566666542 235566666 55 4677777765 3566667777764
No 240
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=9e-05 Score=72.09 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=72.9
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC----------------------CEEEEeecc-cCChHHHHHHHHh---hc--
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY----------------------DVYDLELTA-VKDNTELRKLLIE---TT-- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~----------------------~i~~l~l~~-~~~~~~l~~l~~~---~~-- 294 (500)
.+..+||+||+|+||..+|.++|..+-. +++.+.... .-.-++++.+... .+
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 4668999999999999999999987622 223221110 0112333333322 12
Q ss_pred --CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEc
Q 041423 295 --SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTT 372 (500)
Q Consensus 295 --~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TT 372 (500)
..-|++|+++|.+ +....+.||..++. .+.+.++|++|
T Consensus 86 ~~~~KV~II~~ae~m------------------------------------~~~AaNaLLK~LEE----Pp~~t~fiLit 125 (261)
T PRK05818 86 SNGKKIYIIYGIEKL------------------------------------NKQSANSLLKLIEE----PPKNTYGIFTT 125 (261)
T ss_pred cCCCEEEEeccHhhh------------------------------------CHHHHHHHHHhhcC----CCCCeEEEEEE
Confidence 2467777777763 12345667777764 35678999999
Q ss_pred CCcCcccHHHhcCCeeeEEEEccCC
Q 041423 373 NYVEKLDPALIRRGRMDKHIELSYC 397 (500)
Q Consensus 373 N~~~~lD~aLlr~GR~d~~I~~~~p 397 (500)
+.++.|-|.+++ |. ..+.++.+
T Consensus 126 ~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 126 RNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred CChHhCchHhhh--he-eeeecCCh
Confidence 999999999999 54 22666665
No 241
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.17 E-value=4.1e-06 Score=82.29 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=92.1
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC------EEEE
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD------VYDL 275 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------i~~l 275 (500)
+-..|..+++|++.++....+.+ |.. ..+.| ..|+|||||||||+.+.+.|..+-.+ +..+
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~----~~~------~~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENR----YSG------MPGLP---HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHH----hcc------CCCCC---cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 45677888999988766555533 211 12222 79999999999999999999988553 1123
Q ss_pred eecccCC---hHHHHHHHHhhc---------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 276 ELTAVKD---NTELRKLLIETT---------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 276 ~l~~~~~---~~~l~~l~~~~~---------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
+.++-.+ ...-.+.|..+. ..-.+++||.|...
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT----------------------------------- 144 (360)
T KOG0990|consen 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT----------------------------------- 144 (360)
T ss_pred hccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------------------------------
Confidence 3333221 122234454443 34678999999842
Q ss_pred chhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 344 SKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
+...+.|...+..+ ..+.-+..-+|++..+.|++.. |+- .+.|...+..+......+..
T Consensus 145 -~~AQnALRRviek~----t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 145 -RDAQNALRRVIEKY----TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred -HHHHHHHHHHHHHh----ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHH
Confidence 11223333344433 3445666788999999999987 552 24555555444444444444
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.15 E-value=2.9e-05 Score=76.79 Aligned_cols=200 Identities=18% Similarity=0.241 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---------CCCEEEEeecccCChHHHH-HHH
Q 041423 221 EIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---------NYDVYDLELTAVKDNTELR-KLL 290 (500)
Q Consensus 221 ~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~l~~~~~~~~l~-~l~ 290 (500)
++++.+...+..+. ..-..++||+|++|.|||++++..+... ..|++.+......+...+- .++
T Consensus 44 ~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 44 EALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred HHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 34466665555431 1112479999999999999999998744 2356666655443333332 111
Q ss_pred Hh-----------------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 291 IE-----------------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 291 ~~-----------------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
.. .-+.-+|+|||++.++ .|... -
T Consensus 118 ~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL--aGs~~-------------------------------~ 164 (302)
T PF05621_consen 118 EALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL--AGSYR-------------------------------K 164 (302)
T ss_pred HHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh--cccHH-------------------------------H
Confidence 11 1245689999999975 23321 1
Q ss_pred HhHHHHHHhhhhhccCCCeEEEEEcCCc--CcccHHHhcCCeeeEEEEccCCC-HHHHHHHHHHhhccccchhHHHHHHH
Q 041423 348 LSGLLNFIDGLWSACGGERLIVFTTNYV--EKLDPALIRRGRMDKHIELSYCT-FQGFKVLAKNYLNVETHTLFETIQKL 424 (500)
Q Consensus 348 ls~lL~~ldg~~~~~~~~~ivI~TTN~~--~~lD~aLlr~GR~d~~I~~~~p~-~~~~~~l~~~~l~~~~~~l~~~i~~l 424 (500)
...+||.+-.+.+...-..|.|+|-.-. =.-|+-|-+ ||+. +.+|.-. .+++..++..|-...+ +
T Consensus 165 qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LP---------L 232 (302)
T PF05621_consen 165 QREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALP---------L 232 (302)
T ss_pred HHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCC---------C
Confidence 2345566655533222223444333222 234778877 8854 4444322 3455666555532211 1
Q ss_pred hhcCCCCHHHHHHHhCCCCCC---CcHHHHHHHHHHHHHHhHHHHHHHHH
Q 041423 425 MEDTKITPADVAENLMPKSPS---DNVEKCLSSLIQALKEGKEEAERKQA 471 (500)
Q Consensus 425 ~~~~~~spa~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~ 471 (500)
-+..+++..+++..+...+.. +....-..+.+.|++...+.+..+..
T Consensus 233 r~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l 282 (302)
T PF05621_consen 233 RKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERITREIL 282 (302)
T ss_pred CCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 112345555565555443322 22333345666777776665544443
No 243
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=4.6e-05 Score=75.76 Aligned_cols=124 Identities=23% Similarity=0.175 Sum_probs=67.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHH--hCC--C-EEEEeecccCChHH------------------------HHHHHHh-h
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANL--LNY--D-VYDLELTAVKDNTE------------------------LRKLLIE-T 293 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~--l~~--~-i~~l~l~~~~~~~~------------------------l~~l~~~-~ 293 (500)
.+-+.|+|++|+|||+||..+++. ... + ++.++++...+... +...+.. .
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 445889999999999999999977 322 2 33444443322111 1111111 1
Q ss_pred -cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEc
Q 041423 294 -TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTT 372 (500)
Q Consensus 294 -~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TT 372 (500)
..+++|||||++... .+..+...+- ....+.-||+||
T Consensus 99 ~~~~~LlVlDdv~~~~--------------------------------------~~~~l~~~~~----~~~~~~kilvTT 136 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE--------------------------------------DLEELREPLP----SFSSGSKILVTT 136 (287)
T ss_dssp CCTSEEEEEEEE-SHH--------------------------------------HH-------H----CHHSS-EEEEEE
T ss_pred ccccceeeeeeecccc--------------------------------------cccccccccc----cccccccccccc
Confidence 248999999998631 1111111111 111234566677
Q ss_pred CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 373 NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 373 N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
....-. ..+-. -+..++++..+.++-.+++..+.+..
T Consensus 137 R~~~v~-~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 137 RDRSVA-GSLGG---TDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp SCGGGG-TTHHS---CEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred cccccc-ccccc---cccccccccccccccccccccccccc
Confidence 664322 22211 15679999999999999999887643
No 244
>PHA02774 E1; Provisional
Probab=98.13 E-value=1.3e-05 Score=85.45 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=42.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEE-EeecccCChHHHHHHHHhhcCCeEEEecch
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD-LELTAVKDNTELRKLLIETTSKSIIVIEDI 304 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~-l~l~~~~~~~~l~~l~~~~~~~~Il~iDdi 304 (500)
|+|.++.++||||||||||+++.+|++.++..++. ++..+ .-.+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-------ccccchhccCCEEEEecC
Confidence 46666789999999999999999999999766543 55321 112334445569999998
No 245
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=1.5e-05 Score=79.71 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=86.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCC-------------CEEEEeecc-cCChHHHHHHHHhhc-------CCeEEEe
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNY-------------DVYDLELTA-VKDNTELRKLLIETT-------SKSIIVI 301 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------~i~~l~l~~-~~~~~~l~~l~~~~~-------~~~Il~i 301 (500)
.+..|||+|+.|.||++++.++|+.+-+ ++..++... .-.-++++.+....+ .+-|++|
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 3458999999999999999999998711 233333111 112345666655442 4679999
Q ss_pred cchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHH
Q 041423 302 EDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPA 381 (500)
Q Consensus 302 DdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~a 381 (500)
|++|.+- ....+.||..++.. ++..++|++|+.++.|-|+
T Consensus 97 ~~~e~m~------------------------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~T 136 (299)
T PRK07132 97 KNIEKTS------------------------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPT 136 (299)
T ss_pred ecccccC------------------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHH
Confidence 9988731 12445677777753 4567888888899999999
Q ss_pred HhcCCeeeEEEEccCCCHHHHHHHHHH
Q 041423 382 LIRRGRMDKHIELSYCTFQGFKVLAKN 408 (500)
Q Consensus 382 Llr~GR~d~~I~~~~p~~~~~~~l~~~ 408 (500)
+..+|.+ ++|..++.++....+..
T Consensus 137 I~SRc~~---~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 137 IVSRCQV---FNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHhCeEE---EECCCCCHHHHHHHHHH
Confidence 9997777 99999998887765543
No 246
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.13 E-value=2.3e-05 Score=89.98 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=90.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHh--------------------hcCCeEEEecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIE--------------------TTSKSIIVIED 303 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~--------------------~~~~~Il~iDd 303 (500)
.+++||-|.||.|||+|+.|+|+..|..++.|+++... +|..+|+. +....-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQT---dL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQT---DLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccc---hHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 46899999999999999999999999999999998753 34444432 33467788888
Q ss_pred hhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh----------hhccCCCeEEEEEcC
Q 041423 304 IDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL----------WSACGGERLIVFTTN 373 (500)
Q Consensus 304 iD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~----------~~~~~~~~ivI~TTN 373 (500)
+.-. ++..+.+|-..+|.- .-.|..+..|++|-|
T Consensus 1620 iNLa------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqN 1663 (4600)
T COG5271 1620 INLA------------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQN 1663 (4600)
T ss_pred hhhh------------------------------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecC
Confidence 8752 122344444444411 112345566777766
Q ss_pred Cc------CcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 374 YV------EKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 374 ~~------~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
.- ..|+..++. || ..|.+...+.+....|+....+..
T Consensus 1664 Pq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1664 PQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred chhcCCCcccCCHHHhh--hh-heEEecccccchHHHHHHhhCCcc
Confidence 54 358999999 88 458999999988888887776643
No 247
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.12 E-value=4.1e-05 Score=81.33 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=59.5
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHH
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTE 285 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~ 285 (500)
+..+++.....+.+.+.+..... ....++++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 34566666666666555543221 23468999999999999999998765 46799999998843 33
Q ss_pred HH-HHHHh-----------------hcCCeEEEecchhch
Q 041423 286 LR-KLLIE-----------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 286 l~-~l~~~-----------------~~~~~Il~iDdiD~~ 307 (500)
+. .+|+. ...+..||||||+.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC
Confidence 33 33331 134688999999985
No 248
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.05 E-value=5.9e-05 Score=80.37 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=60.1
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
..+++.......+++.+...... ...++++|++||||+++++++.... +.+++.++|..+....--
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 44566655556666665544433 3469999999999999999997764 568999999988533222
Q ss_pred HHHHHhh-----------------cCCeEEEecchhch
Q 041423 287 RKLLIET-----------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 287 ~~l~~~~-----------------~~~~Il~iDdiD~~ 307 (500)
..+|+.. ....+|||||||.+
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l 249 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM 249 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC
Confidence 3344321 23579999999985
No 249
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.03 E-value=7.5e-05 Score=79.71 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=93.7
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
..+++......++.+.+...... ...+++.|.+||||+++++++.... +.+++.++|..+.. ..+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~-----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS-----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc-----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHH
Confidence 34677776667776666543322 3468999999999999999998764 56899999998743 333
Q ss_pred H-HHHHh-----------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 287 R-KLLIE-----------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 287 ~-~l~~~-----------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
. .+|+. ...++.|||||||.+-. ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------------------------~~q 245 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------------------------DAQ 245 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------------------------HHH
Confidence 3 33331 12368899999998521 123
Q ss_pred hHHHHHHhhhh-hccC------CCeEEEEEcCCc-------CcccHHHhcCCeee-EEEEccCCC--HHHHHHHHHHhhc
Q 041423 349 SGLLNFIDGLW-SACG------GERLIVFTTNYV-------EKLDPALIRRGRMD-KHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 349 s~lL~~ldg~~-~~~~------~~~ivI~TTN~~-------~~lD~aLlr~GR~d-~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
..|+.+++.-. ...+ .++-||+||+.. ..+.+.|.. |+. .+|++|+.. .++...|+..|+.
T Consensus 246 ~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 246 TRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 34555554211 0001 123466666543 234445554 443 478888877 6777778887764
No 250
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.02 E-value=0.00024 Score=76.55 Aligned_cols=130 Identities=17% Similarity=0.256 Sum_probs=81.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC----------CCEEEEeecccCChHH----------------------HHHHHH--
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN----------YDVYDLELTAVKDNTE----------------------LRKLLI-- 291 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~----------~~i~~l~l~~~~~~~~----------------------l~~l~~-- 291 (500)
.+.+.|-||||||.++..+-..|. ++++.|+...+....+ |...|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 367889999999999999988763 3344555444433322 223333
Q ss_pred -hhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEE
Q 041423 292 -ETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF 370 (500)
Q Consensus 292 -~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~ 370 (500)
....++||+|||+|.++. + ...-|.|++|-... .+...+||+
T Consensus 504 k~~~~~~VvLiDElD~Lvt---r---------------------------------~QdVlYn~fdWpt~-~~sKLvvi~ 546 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT---R---------------------------------SQDVLYNIFDWPTL-KNSKLVVIA 546 (767)
T ss_pred CCCCCCEEEEeccHHHHhc---c---------------------------------cHHHHHHHhcCCcC-CCCceEEEE
Confidence 112479999999999752 1 22346677775432 334567777
Q ss_pred EcCCcCcccHHHhcC---Ceee-EEEEccCCCHHHHHHHHHHhhccc
Q 041423 371 TTNYVEKLDPALIRR---GRMD-KHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 371 TTN~~~~lD~aLlr~---GR~d-~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
..|..+. ++.++-+ -|++ ..|.|.+.+.+|..+|+..-|...
T Consensus 547 IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 547 IANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 7776653 3333321 1333 458899999999999988887654
No 251
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.02 E-value=2.8e-06 Score=85.07 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=87.4
Q ss_pred hhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---ChHHHHHHHHhhcC-----CeEEEecchhch
Q 041423 238 RIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK---DNTELRKLLIETTS-----KSIIVIEDIDCS 307 (500)
Q Consensus 238 ~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~---~~~~l~~l~~~~~~-----~~Il~iDdiD~~ 307 (500)
++....+.| +.|.||+|+|||||+++|++.+...-..+.+.... ....+++.++..++ +.+-+-|.++.+
T Consensus 23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~ 102 (293)
T COG1131 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFF 102 (293)
T ss_pred ceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHH
Confidence 344444555 89999999999999999999998876666555432 12344444443332 222334444444
Q ss_pred hcccCcchhhhcccchHHHhhhhhhh-----------------------hccCC---CCCCcchhcHhHHHHHHhhhhhc
Q 041423 308 LDLTGQRKKKAEKSSDDEKEKLDKEI-----------------------SRKEP---KEEGSSKVTLSGLLNFIDGLWSA 361 (500)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~---~~~~~~~~~ls~lL~~ldg~~~~ 361 (500)
..+.+..........++..+.++... ..++. .+++.++.+......+++-+...
T Consensus 103 ~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l 182 (293)
T COG1131 103 ARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182 (293)
T ss_pred HHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence 44444321111111122222221111 01111 13666666666666666666555
Q ss_pred cCCC-eEEEEEcCCcCcccH-----HHhcCCeeeEEEEcc
Q 041423 362 CGGE-RLIVFTTNYVEKLDP-----ALIRRGRMDKHIELS 395 (500)
Q Consensus 362 ~~~~-~ivI~TTN~~~~lD~-----aLlr~GR~d~~I~~~ 395 (500)
+.++ +.|++||+.++.+.. .+++.|++ +..+
T Consensus 183 ~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~---~~~g 219 (293)
T COG1131 183 AKEGGVTILLSTHILEEAEELCDRVIILNDGKI---IAEG 219 (293)
T ss_pred HhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE---EEeC
Confidence 5554 899999999887654 56677777 6666
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.0011 Score=66.01 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=79.3
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhC------------------------CCEEEEeeccc-CChHHHHHHHHhhc---
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLN------------------------YDVYDLELTAV-KDNTELRKLLIETT--- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~l~~~-~~~~~l~~l~~~~~--- 294 (500)
.+.+|||+|| +||+++|.++|..+- ++++.+..... -.-+.++.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4558999996 689999999998652 22333332211 12345555544332
Q ss_pred ---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEE
Q 041423 295 ---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFT 371 (500)
Q Consensus 295 ---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~T 371 (500)
..-|++||++|.+- ...-+.||..++.- +.+.++|++
T Consensus 101 ~~~~~kV~II~~ad~m~------------------------------------~~AaNaLLKtLEEP----p~~t~~iL~ 140 (290)
T PRK07276 101 YEGKQQVFIIKDADKMH------------------------------------VNAANSLLKVIEEP----QSEIYIFLL 140 (290)
T ss_pred ccCCcEEEEeehhhhcC------------------------------------HHHHHHHHHHhcCC----CCCeEEEEE
Confidence 34689999998742 23456788887753 456899999
Q ss_pred cCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 372 TNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 372 TN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
|+.++.|-|.++++++. |.|+. +.+...+++.
T Consensus 141 t~~~~~lLpTI~SRcq~---i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 141 TNDENKVLPTIKSRTQI---FHFPK-NEAYLIQLLE 172 (290)
T ss_pred ECChhhCchHHHHccee---eeCCC-cHHHHHHHHH
Confidence 99999999999996655 88876 5555555443
No 253
>PRK15115 response regulator GlrR; Provisional
Probab=97.97 E-value=7.9e-05 Score=79.12 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=46.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHHHHHHh-----------------hcCCeEEEecch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELRKLLIE-----------------TTSKSIIVIEDI 304 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~~l~~~-----------------~~~~~Il~iDdi 304 (500)
..++++|++||||+++|+++.... +.+++.++|..+....--..+|+. ...+..||||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i 237 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEcc
Confidence 468999999999999999998875 468999999987432212233322 124578999999
Q ss_pred hch
Q 041423 305 DCS 307 (500)
Q Consensus 305 D~~ 307 (500)
|.+
T Consensus 238 ~~l 240 (444)
T PRK15115 238 GDM 240 (444)
T ss_pred ccC
Confidence 985
No 254
>PRK07261 topology modulation protein; Provisional
Probab=97.97 E-value=3.8e-05 Score=70.76 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=26.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
+++.||||+|||||++.|+..++.+++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999988866543
No 255
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.00029 Score=72.75 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=98.1
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecccCChH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAVKDNT 284 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~~~~ 284 (500)
.+|.|.+.....+.+.+...+.. .-...+.+.|-||||||.+..-+-..+ ....+.++|.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 56677666655554444333332 223468899999999998888666544 2245778888864433
Q ss_pred HH-HHHHHh------------------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCC
Q 041423 285 EL-RKLLIE------------------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPK 339 (500)
Q Consensus 285 ~l-~~l~~~------------------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (500)
.+ .+++.. ...+-++++||+|.++. ++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t----r~------------------------ 272 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT----RS------------------------ 272 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh----cc------------------------
Confidence 22 222211 12357889999999751 10
Q ss_pred CCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhc----CCeeeEEEEccCCCHHHHHHHHHHhhcccc
Q 041423 340 EEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIR----RGRMDKHIELSYCTFQGFKVLAKNYLNVET 414 (500)
Q Consensus 340 ~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr----~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~ 414 (500)
+.+ |..++.+.......+|+|+-.|..+.-|..|.| .+.-...+.|++++.++..+|++.-+....
T Consensus 273 -----~~v----Ly~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 273 -----QTV----LYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred -----cce----eeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 011 112222222234557888899988876665543 334456699999999999999998886543
No 256
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.96 E-value=5.5e-05 Score=82.38 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=81.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeeccc----CChHHHHHHHHh-----------hcCCeEEEecchhch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAV----KDNTELRKLLIE-----------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~----~~~~~l~~l~~~-----------~~~~~Il~iDdiD~~ 307 (500)
.|++|-|++|||||+++++++..+.. ++..+..+.- -..-+|...+.. ...+.|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 48999999999999999999999865 6665544331 111122222211 124689999999763
Q ss_pred hcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh---------hhhhccCCCeEEEEEcCCc---
Q 041423 308 LDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID---------GLWSACGGERLIVFTTNYV--- 375 (500)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld---------g~~~~~~~~~ivI~TTN~~--- 375 (500)
...+++.|++.|+ |.....+...++|+|-|..
T Consensus 106 ------------------------------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~ 149 (584)
T PRK13406 106 ------------------------------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED 149 (584)
T ss_pred ------------------------------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc
Confidence 2347777887775 2222233456778875533
Q ss_pred CcccHHHhcCCeeeEEEEccCCCHHHH
Q 041423 376 EKLDPALIRRGRMDKHIELSYCTFQGF 402 (500)
Q Consensus 376 ~~lD~aLlr~GR~d~~I~~~~p~~~~~ 402 (500)
+.|.++|+. ||+++|.+++++..+.
T Consensus 150 ~~L~~~lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 150 ERAPAALAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred cCCCHHhHh--heEEEEEcCCCChHHh
Confidence 458999999 9999999999987654
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.92 E-value=6.4e-05 Score=67.42 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=25.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
++|+||||+|||+++..++..+ +.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999999887 445555544
No 258
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=6e-05 Score=79.27 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=70.1
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
+.++-+|+++++......++++.++.+-.. .-.+||+|.+||||..+|++|=+.. +.||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 456668999999998888888777655543 3479999999999999999998765 77899999999
Q ss_pred cCChHHHHHHHHhh------------------cCCeEEEecchhch
Q 041423 280 VKDNTELRKLLIET------------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 280 ~~~~~~l~~l~~~~------------------~~~~Il~iDdiD~~ 307 (500)
+-..--=..+|+.. ++..-||+|||..+
T Consensus 307 iPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 83321113444332 23578999999763
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=97.92 E-value=6.4e-05 Score=68.97 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=28.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++++||||+||||+++.|++.++.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4899999999999999999999999988655
No 260
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.92 E-value=7.7e-06 Score=70.36 Aligned_cols=29 Identities=38% Similarity=0.778 Sum_probs=25.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
|++.|||||||||+++.+|..++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 68999999999999999999998876543
No 261
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.90 E-value=4.4e-05 Score=71.72 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=59.4
Q ss_pred eeeeCCCCCcHHHHHHHH-HH-Hh--CCCEEEEeecccC-----C---------------------hHHHHHHHHhhcCC
Q 041423 247 YLLYGPPGTGKSTMIAAM-AN-LL--NYDVYDLELTAVK-----D---------------------NTELRKLLIETTSK 296 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~ai-A~-~l--~~~i~~l~l~~~~-----~---------------------~~~l~~l~~~~~~~ 296 (500)
++++|.||+|||+.|-.. .. .+ |.+++. ++.++. . ...+. .....+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPD-DWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHH-HHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhh-hhcccCCC
Confidence 578999999999977554 33 22 666665 444221 0 01111 12223468
Q ss_pred eEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC
Q 041423 297 SIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE 376 (500)
Q Consensus 297 ~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~ 376 (500)
++|||||+...++..... .......++++. ..+..+.-||++|.++.
T Consensus 81 ~liviDEa~~~~~~r~~~------------------------------~~~~~~~~~~l~---~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWK------------------------------GKKVPEIIEFLA---QHRHYGWDIILITQSPS 127 (193)
T ss_dssp -EEEETTGGGTSB---T-------------------------------T----HHHHGGG---GCCCTT-EEEEEES-GG
T ss_pred cEEEEECChhhcCCCccc------------------------------cccchHHHHHHH---HhCcCCcEEEEEeCCHH
Confidence 999999999876421110 001112223332 23345678999999999
Q ss_pred cccHHHhcCCeeeEEEEccCC
Q 041423 377 KLDPALIRRGRMDKHIELSYC 397 (500)
Q Consensus 377 ~lD~aLlr~GR~d~~I~~~~p 397 (500)
.||+-+++ .++.++++..+
T Consensus 128 ~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 128 QIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp GB-HHHHC--CEEEEEEEEE-
T ss_pred HHhHHHHH--HHheEEEEEee
Confidence 99998876 88988887654
No 262
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.90 E-value=1.9e-05 Score=76.76 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=92.9
Q ss_pred CCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--C--ChHHHHHHHHhhcC-----CeEEEecchhchh
Q 041423 240 GKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--K--DNTELRKLLIETTS-----KSIIVIEDIDCSL 308 (500)
Q Consensus 240 g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~--~~~~l~~l~~~~~~-----~~Il~iDdiD~~~ 308 (500)
.+..+.| ..|.||+|||||||.++|++.+.+.-..+-+... . ...++.+.+...++ ..+.+.|-+-.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~-- 99 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL-- 99 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhh--
Confidence 3334444 7899999999999999999999877555544443 1 34455555555553 24556665532
Q ss_pred cccCcch---------hhhcccchHHHhhhhhhhh-----------------------ccCC---CCCCcchhcHhHHHH
Q 041423 309 DLTGQRK---------KKAEKSSDDEKEKLDKEIS-----------------------RKEP---KEEGSSKVTLSGLLN 353 (500)
Q Consensus 309 ~~~g~~~---------~~~~~~~~~~~~~~~~~~~-----------------------~~~~---~~~~~~~~~ls~lL~ 353 (500)
|+.. .++.+.+.+.++.++.... .+.+ .+++.+..++..-+.
T Consensus 100 ---GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~e 176 (258)
T COG1120 100 ---GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176 (258)
T ss_pred ---cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHH
Confidence 2221 1111111111222211111 0000 136777777777777
Q ss_pred HHhhhhhcc-CCCeEEEEEcCCcCcc----cH-HHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 354 FIDGLWSAC-GGERLIVFTTNYVEKL----DP-ALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 354 ~ldg~~~~~-~~~~ivI~TTN~~~~l----D~-aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
.|+-+..-. ..+..+|+++++++.. |. .+++.|++ +..+.|..--..++++..++.+
T Consensus 177 vl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i---~a~G~p~evlT~e~l~~Vygv~ 239 (258)
T COG1120 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI---VAQGTPEEVLTEENLREVYGVD 239 (258)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE---EeecCcchhcCHHHHHHHhCCc
Confidence 776665444 3468899999876431 11 34466777 7777776655556666666543
No 263
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.90 E-value=2e-05 Score=72.30 Aligned_cols=150 Identities=13% Similarity=0.196 Sum_probs=87.2
Q ss_pred HHhhChHHHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc-----cC--ChHHHHHHHHhhcC---
Q 041423 228 TFSKSRDFYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA-----VK--DNTELRKLLIETTS--- 295 (500)
Q Consensus 228 ~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~-----~~--~~~~l~~l~~~~~~--- 295 (500)
.|-.++..+.++.+..++| .+|.||+|+||||+++.|.....+.-..+.+.. +. .-..|++-++-..+
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 3444555666777666777 778899999999999999999877755443333 21 12234433333222
Q ss_pred --CeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhh-----------------------ccCC---CCCC---cc
Q 041423 296 --KSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEIS-----------------------RKEP---KEEG---SS 344 (500)
Q Consensus 296 --~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~---~~~~---~~ 344 (500)
+..-+.|++-..+...|.......+++.+.++.++...- ..+. .+++ -.
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLD 169 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169 (223)
T ss_pred ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCC
Confidence 222356677666666777766666666555544433211 0000 0122 23
Q ss_pred hhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccH
Q 041423 345 KVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP 380 (500)
Q Consensus 345 ~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~ 380 (500)
..+-.++++.+..+.. -+..|+++|++.+.++.
T Consensus 170 p~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 170 PDLSWEIMRLFEEINR---LGTTVLMATHDLELVNR 202 (223)
T ss_pred hHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHh
Confidence 3344566666666643 45788889988766554
No 264
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.89 E-value=0.00027 Score=79.72 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
+.++|.||+|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 46899999999999999999876
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.85 E-value=2.2e-05 Score=83.69 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=48.7
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEee
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYDVYDLEL 277 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l 277 (500)
.-|+++.|.++.+++|++.+..-..+- + ..++-++|.||||+|||||+++||..+ .+++|.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 348899999999999988775544431 1 123468899999999999999999977 457777643
No 266
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=7.9e-05 Score=76.62 Aligned_cols=63 Identities=30% Similarity=0.405 Sum_probs=41.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh----C-CCEEEEeeccc----------------------CChHHHHHHHHhhcCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL----N-YDVYDLELTAV----------------------KDNTELRKLLIETTSK 296 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~l~~~----------------------~~~~~l~~l~~~~~~~ 296 (500)
+..++|+||+|+||||++..||..+ + ..+..+..... .+..++...+......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3458999999999999999999864 3 24554544332 1223344445555566
Q ss_pred eEEEecchhc
Q 041423 297 SIIVIEDIDC 306 (500)
Q Consensus 297 ~Il~iDdiD~ 306 (500)
.+|+||....
T Consensus 217 DlVLIDTaG~ 226 (374)
T PRK14722 217 HMVLIDTIGM 226 (374)
T ss_pred CEEEEcCCCC
Confidence 7788887743
No 267
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.84 E-value=0.00069 Score=70.00 Aligned_cols=44 Identities=30% Similarity=0.333 Sum_probs=31.8
Q ss_pred EEEEcCCc---CcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 368 IVFTTNYV---EKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 368 vI~TTN~~---~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
|||.|+.. ..|..|| |.|+-..|.++.++.+.-+..+...|...
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 44444444 3466687 56877889999999998888888877643
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.83 E-value=0.00013 Score=69.29 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=31.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
|++...-++++||||||||+++..+|... +..+..++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66666679999999999999999888643 55677777764
No 269
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.82 E-value=0.00012 Score=82.75 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+.++|.||+++|||++.+.++-
T Consensus 328 ~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHH
Confidence 4689999999999999998874
No 270
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.81 E-value=1.3e-05 Score=80.91 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=27.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+.|.||+|+|||||++.|++.+.++-..+.+.
T Consensus 36 ~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~ 67 (306)
T PRK13537 36 FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67 (306)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 78999999999999999999987765555443
No 271
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.76 E-value=2.5e-05 Score=71.53 Aligned_cols=34 Identities=35% Similarity=0.392 Sum_probs=30.1
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.+..++|+||||||||++++++|..++.++++.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3456799999999999999999999999988863
No 272
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.00011 Score=66.34 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=25.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
.-+.|.||+|+|||||+++|++.+..+-..+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i 56 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEI 56 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 3588999999999999999999886654433
No 273
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=4.3e-05 Score=70.36 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=55.6
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhh
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKK 317 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~ 317 (500)
....-+.+.||+|||||||...+|+...+.-..+.+... +.+..=+.+..+.. -|..-++|++..-+.+.|..+..
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence 333448889999999999999999999887666655543 22221122211111 14455678888777777777655
Q ss_pred hcccchHHHhhhhh
Q 041423 318 AEKSSDDEKEKLDK 331 (500)
Q Consensus 318 ~~~~~~~~~~~~~~ 331 (500)
..+.+......++.
T Consensus 109 R~~~a~q~l~~VgL 122 (259)
T COG4525 109 RREIAHQMLALVGL 122 (259)
T ss_pred HHHHHHHHHHHhCc
Confidence 55444444444433
No 274
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.74 E-value=0.00026 Score=75.02 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=57.6
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHH-
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELR- 287 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~- 287 (500)
+++.......+++++..+.. ....++++|.+||||+++++++.... +.+++.++|..+.. ..+.
T Consensus 141 lig~s~~~~~~~~~i~~~~~-----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~ 208 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLES 208 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHH
Confidence 45555555556555533221 23569999999999999999997654 56899999998753 3333
Q ss_pred HHHHh-----------------hcCCeEEEecchhch
Q 041423 288 KLLIE-----------------TTSKSIIVIEDIDCS 307 (500)
Q Consensus 288 ~l~~~-----------------~~~~~Il~iDdiD~~ 307 (500)
.+|+. ...++.|||||||.+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l 245 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC
Confidence 33331 124688999999985
No 275
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.74 E-value=3.2e-05 Score=77.96 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=27.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 53 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA 53 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 378999999999999999999987765555443
No 276
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.73 E-value=0.00025 Score=76.03 Aligned_cols=160 Identities=23% Similarity=0.290 Sum_probs=90.8
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhC-CCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc-------c-C
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIG-KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA-------V-K 281 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~-------~-~ 281 (500)
+|.+.++.|+-|+- ..|=.....+..-| ..-.-++||+|.||||||-+.+.+++.+-.-+|.-.-.+ . .
T Consensus 430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 34566777776632 22222233333333 111124999999999999999999998877666421111 0 1
Q ss_pred ChHHHHHHHHhh-----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 DNTELRKLLIET-----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ~~~~l~~l~~~~-----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
-+.+-+++..+. ....|-.|||+|.+.+ .+-+.|+..|+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------------------------StrSvLhEvME 551 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------------------------STRSVLHEVME 551 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH------------------------------------HHHHHHHHHHH
Confidence 111222333222 3578889999998521 12233444333
Q ss_pred ---------hhhhccCCCeEEEEEcCCcC-------------cccHHHhcCCeeeEEE-EccCCCHHHHHHHHHHhh
Q 041423 357 ---------GLWSACGGERLIVFTTNYVE-------------KLDPALIRRGRMDKHI-ELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 357 ---------g~~~~~~~~~ivI~TTN~~~-------------~lD~aLlr~GR~d~~I-~~~~p~~~~~~~l~~~~l 410 (500)
|+-..-....-|+++.|..+ .|+|.|++ |||... -+..|++..=+.|..+..
T Consensus 552 QQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 552 QQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred HhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 22222223346888888543 37899999 999765 457777664455555544
No 277
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=0.00024 Score=67.84 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+.++|.||+|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999983
No 278
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.72 E-value=0.00017 Score=68.04 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=41.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHH-----hCCCEE-----------EEeeccc-----------CChHHHHHHHHhhc--
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANL-----LNYDVY-----------DLELTAV-----------KDNTELRKLLIETT-- 294 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~i~-----------~l~l~~~-----------~~~~~l~~l~~~~~-- 294 (500)
.+-++|.||+|+||||+++.|+.. .|.++- ...++.. ....++..++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 356899999999999999999963 344321 0011100 01134566777777
Q ss_pred CCeEEEecchhc
Q 041423 295 SKSIIVIEDIDC 306 (500)
Q Consensus 295 ~~~Il~iDdiD~ 306 (500)
.|.++++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999744
No 279
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.71 E-value=4.2e-05 Score=73.24 Aligned_cols=159 Identities=20% Similarity=0.278 Sum_probs=95.0
Q ss_pred HHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--C--ChHHHHHHHHhhcC-----CeEEEecc
Q 041423 235 FYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--K--DNTELRKLLIETTS-----KSIIVIED 303 (500)
Q Consensus 235 ~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~--~~~~l~~l~~~~~~-----~~Il~iDd 303 (500)
...++......| +.|.||+||||||+.+.|-+.....-..+-+... . +.-+||.-++..-+ |..-+.++
T Consensus 16 av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eN 95 (309)
T COG1125 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAEN 95 (309)
T ss_pred eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHH
Confidence 334444444455 6789999999999999999988887655544432 2 45677777766543 66667888
Q ss_pred hhchhcccCcchhhhcccchHHHhhhhhhh--hccC-----C------------------------CCCCcchhcHhHHH
Q 041423 304 IDCSLDLTGQRKKKAEKSSDDEKEKLDKEI--SRKE-----P------------------------KEEGSSKVTLSGLL 352 (500)
Q Consensus 304 iD~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~-----~------------------------~~~~~~~~~ls~lL 352 (500)
|-....+.|=.+.+...++.++++.++... .... + +-+.-...+-..|.
T Consensus 96 Ia~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ 175 (309)
T COG1125 96 IATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175 (309)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHH
Confidence 887766766666666666666665544321 1000 0 00122334445555
Q ss_pred HHHhhhhhccCCCeEEEEEcCCcCcc----cH-HHhcCCeeeEEEEccCCC
Q 041423 353 NFIDGLWSACGGERLIVFTTNYVEKL----DP-ALIRRGRMDKHIELSYCT 398 (500)
Q Consensus 353 ~~ldg~~~~~~~~~ivI~TTN~~~~l----D~-aLlr~GR~d~~I~~~~p~ 398 (500)
+.+-.+... -+..|||.|++.+.. |. ++++.|++ +.+..|+
T Consensus 176 ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i---~Q~~~P~ 221 (309)
T COG1125 176 EEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEI---VQYDTPD 221 (309)
T ss_pred HHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeE---EEeCCHH
Confidence 555555432 346888889875421 11 44456666 6666655
No 280
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.70 E-value=6.5e-05 Score=64.82 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=42.0
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHh
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (500)
..|.|++-+++.|++.|..++..+ .+++. +-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357899999999999999998763 22333 4599999999999999999986
No 281
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.68 E-value=8e-05 Score=71.14 Aligned_cols=22 Identities=45% Similarity=0.893 Sum_probs=19.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
.-+|+||+||+||||+|+.+++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4599999999999999999974
No 282
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0001 Score=67.56 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=34.9
Q ss_pred HHHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 234 DFYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 234 ~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
..|..+++.+..| +.+.||+|+|||||.+.||+.+.++-..+.+..
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 3444555544445 778899999999999999999988877666553
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00039 Score=67.29 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|+|.+..++++||||||||+++..++... +.+++.+++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 67777779999999999999999986542 5566666553
No 284
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00061 Score=70.66 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=27.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhC-------CCEEEEeecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLN-------YDVYDLELTA 279 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~l~~ 279 (500)
++-++|+||+|+||||++.-+|..+. ..+..+++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 45689999999999999999998763 4555555444
No 285
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.64 E-value=0.00014 Score=71.13 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=59.8
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCE-----E-----EEeec
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDV-----Y-----DLELT 278 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i-----~-----~l~l~ 278 (500)
.|.|+.-+++.|+..+..|+.++. +++. +=|||+|||||+.+++.||+.+-..- + ..++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 478999999999999999988732 2233 45899999999999999999873321 1 11111
Q ss_pred ccCC----hHHHHHHHHhh---cCCeEEEecchhch
Q 041423 279 AVKD----NTELRKLLIET---TSKSIIVIEDIDCS 307 (500)
Q Consensus 279 ~~~~----~~~l~~l~~~~---~~~~Il~iDdiD~~ 307 (500)
.-.. ..+|+..+..+ .+++|.+|||+|.+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1110 12343333333 36899999999984
No 286
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.63 E-value=4.3e-05 Score=78.24 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=28.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.|++.+.+.-..+.+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G 102 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG 102 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECC
Confidence 4889999999999999999999877766555443
No 287
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.62 E-value=2.3e-05 Score=79.90 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=69.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc----c-----CChH----HHHHHHHhhcCCeEEEecchhchhcccC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA----V-----KDNT----ELRKLLIETTSKSIIVIEDIDCSLDLTG 312 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~----~-----~~~~----~l~~l~~~~~~~~Il~iDdiD~~~~~~g 312 (500)
++||+|.||||||.|.+.++......+|.-.-.. + .++. .+..-..-...+.|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 5999999999999999998877666665432111 1 1110 0111111234689999999998421
Q ss_pred cchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh---------hhhccCCCeEEEEEcCCcC-------
Q 041423 313 QRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG---------LWSACGGERLIVFTTNYVE------- 376 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg---------~~~~~~~~~ivI~TTN~~~------- 376 (500)
.....|+..|+. +...-+...-|++++|...
T Consensus 136 ---------------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~ 182 (331)
T PF00493_consen 136 ---------------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNK 182 (331)
T ss_dssp ---------------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS
T ss_pred ---------------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhh
Confidence 123334444441 1111112346888998765
Q ss_pred ------cccHHHhcCCeeeEEEEc-cCCCHHHHHHHHHHhhc
Q 041423 377 ------KLDPALIRRGRMDKHIEL-SYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 377 ------~lD~aLlr~GR~d~~I~~-~~p~~~~~~~l~~~~l~ 411 (500)
.+++.|+. |||..+.+ ..++.+.=..|.++.+.
T Consensus 183 ~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 183 SLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 47789999 99998765 56666655666665554
No 288
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=0.00021 Score=66.19 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=39.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc-----c-----CChHHHHHH---HHhhcCCeEEEecchhc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA-----V-----KDNTELRKL---LIETTSKSIIVIEDIDC 306 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~-----~-----~~~~~l~~l---~~~~~~~~Il~iDdiD~ 306 (500)
.-+.|.||+|+|||||++.|++.+..+-..+.+.. + -+...-+++ ..-...|.++++||--.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 34789999999999999999998765533332221 1 011111111 12234789999999755
No 289
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.58 E-value=0.0015 Score=75.32 Aligned_cols=139 Identities=18% Similarity=0.245 Sum_probs=86.5
Q ss_pred CcccceeeeCCCCCcHHHH-HHHHHHHhCCCEEEEeecccCChH-HHHHHHHhh------------cC----CeEEEecc
Q 041423 242 AWKRGYLLYGPPGTGKSTM-IAAMANLLNYDVYDLELTAVKDNT-ELRKLLIET------------TS----KSIIVIED 303 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsl-a~aiA~~l~~~i~~l~l~~~~~~~-~l~~l~~~~------------~~----~~Il~iDd 303 (500)
.-.|+|+++||||+|||++ .-++-+.+-.++..++.+.-.... .|.-+=..+ |. ..|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 3468999999999999985 458888999999999988775444 444333222 11 36788999
Q ss_pred hhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccC------CCeEEEEEcCCcCc
Q 041423 304 IDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACG------GERLIVFTTNYVEK 377 (500)
Q Consensus 304 iD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~------~~~ivI~TTN~~~~ 377 (500)
|.. + .|.. -.+..-+.+-.-|-.-.|+|+.-. .+.+++.++|.+..
T Consensus 1572 InL--p-~~~~-------------------------y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td 1623 (3164)
T COG5245 1572 INL--P-YGFE-------------------------YYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTD 1623 (3164)
T ss_pred cCC--c-cccc-------------------------cCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCC
Confidence 983 1 1110 011111111111122235665432 24677789987653
Q ss_pred c-----cHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 378 L-----DPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 378 l-----D~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
. ...++|.--| |.+.||.-.....|...++.
T Consensus 1624 ~gRv~~~eRf~r~~v~---vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1624 EGRVKYYERFIRKPVF---VFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred cccCccHHHHhcCceE---EEecCcchhhHHHHHHHHHH
Confidence 2 3577774444 99999998888888776653
No 290
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.58 E-value=0.00052 Score=77.50 Aligned_cols=167 Identities=20% Similarity=0.234 Sum_probs=101.7
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhC-hHHHHhhCCCc-cc-ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKS-RDFYARIGKAW-KR-GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~-~~~~~~~g~~~-~r-g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
..|.....+.+.......+.+.+..+-+. +.-|...+-.. .. .+|++||||.|||+.+.++|..+++.++..+.+..
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 34455566777666665665555555211 11222221111 12 36899999999999999999999999999999887
Q ss_pred CChHHHHHHHHhhc--------------------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCC
Q 041423 281 KDNTELRKLLIETT--------------------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKE 340 (500)
Q Consensus 281 ~~~~~l~~l~~~~~--------------------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (500)
.+...+...+..+. ...||++||+|-.+.
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~------------------------------- 442 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG------------------------------- 442 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-------------------------------
Confidence 66655554443321 124899999997531
Q ss_pred CCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccH-HHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 341 EGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDP-ALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 341 ~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~-aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
..+-.++.+-..+. ...+=+|+|+|....... ++.+- ..-|+|+.|+.++...-+..++..
T Consensus 443 --~dRg~v~~l~~l~~------ks~~Piv~~cndr~~p~sr~~~~~---~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 443 --EDRGGVSKLSSLCK------KSSRPLVCTCNDRNLPKSRALSRA---CSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred --hhhhhHHHHHHHHH------hccCCeEEEecCCCCccccchhhh---cceeeecCCcHHHHHhhhhhhhcc
Confidence 11112222222222 122457888887766555 44443 356899999988877666666543
No 291
>PTZ00202 tuzin; Provisional
Probab=97.57 E-value=0.0057 Score=63.65 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
-|....+.+|-+.....+...+. +.....++-..|.||+|||||++++.++..++...+.+++. ...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr--g~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR--GTED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC--CHHH
Confidence 35556677887777666644442 22333445678999999999999999999999888887777 2344
Q ss_pred HHHHHHHhhc
Q 041423 285 ELRKLLIETT 294 (500)
Q Consensus 285 ~l~~l~~~~~ 294 (500)
-++.++....
T Consensus 325 lLr~LL~ALG 334 (550)
T PTZ00202 325 TLRSVVKALG 334 (550)
T ss_pred HHHHHHHHcC
Confidence 4555554433
No 292
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.57 E-value=0.00039 Score=66.78 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++...-++++||||+|||+++..+|... +.+++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56666668999999999999999998754 6677777766
No 293
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.56 E-value=0.0003 Score=64.20 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
.-+.|.||+|+|||||++.|++.....-..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v 57 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEI 57 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 3488999999999999999999876543333
No 294
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.54 E-value=0.00085 Score=64.07 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++.++-++++||||||||+++..+|..+ +.++..++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56666669999999999999999988765 4566666543
No 295
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.53 E-value=0.00069 Score=69.61 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=24.1
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
|..+| .|++||||+|||+|++.|++....
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 44455 899999999999999999997743
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.52 E-value=8.6e-05 Score=66.54 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=27.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|+||||||||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988654
No 297
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.51 E-value=0.001 Score=66.15 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=92.0
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHH-HHH--HhCCCEEEEeecccC-C----
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAA-MAN--LLNYDVYDLELTAVK-D---- 282 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~a-iA~--~l~~~i~~l~l~~~~-~---- 282 (500)
.+.|..+..+.+-+.++.-.-. .-...+++.||.|+|||.++.. ++. +.|-+++.+.+...- +
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3455555555555544433321 1234699999999999998763 333 678888888776541 1
Q ss_pred ----------------------hHHHHHHHHhhc-------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhh
Q 041423 283 ----------------------NTELRKLLIETT-------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEI 333 (500)
Q Consensus 283 ----------------------~~~l~~l~~~~~-------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (500)
.+.+.+++.... .+.|.++||||-++.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------------ 151 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------------ 151 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------------
Confidence 011222222221 245667789998542
Q ss_pred hccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCeeeEE-EEccC-CCHHHHHHHHHH
Q 041423 334 SRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRMDKH-IELSY-CTFQGFKVLAKN 408 (500)
Q Consensus 334 ~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~d~~-I~~~~-p~~~~~~~l~~~ 408 (500)
.++.+ -|.|.+|-..++ ...+.||+.|.+. |.|...+.. ||-.. |+|.. ....+...+.+.
T Consensus 152 ---------h~rQt--llYnlfDisqs~-r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 152 ---------HSRQT--LLYNLFDISQSA-RAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred ---------chhhH--HHHHHHHHHhhc-CCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHH
Confidence 11222 266777766554 3456677766544 455667777 88654 66654 458899999999
Q ss_pred hhc
Q 041423 409 YLN 411 (500)
Q Consensus 409 ~l~ 411 (500)
.+.
T Consensus 218 ll~ 220 (408)
T KOG2228|consen 218 LLS 220 (408)
T ss_pred Hhc
Confidence 884
No 298
>PRK13947 shikimate kinase; Provisional
Probab=97.50 E-value=8.7e-05 Score=67.96 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|.|+||||||++++.+|..|++++++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999998754
No 299
>PRK03839 putative kinase; Provisional
Probab=97.50 E-value=8.2e-05 Score=68.92 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=27.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
++|.|+||+||||+++.+|..++++++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887643
No 300
>PRK13949 shikimate kinase; Provisional
Probab=97.50 E-value=8.1e-05 Score=68.40 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=28.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|+||||+||||+++.+|+.+++++++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988755
No 301
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.49 E-value=0.00056 Score=67.60 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=24.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
.++++.||||+|||||.+++++.+....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~ 139 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI 139 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC
Confidence 4799999999999999999999986653
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0014 Score=68.67 Aligned_cols=62 Identities=29% Similarity=0.335 Sum_probs=42.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC-EEEEeecccCChHHHHHH---HHhhc--CCeEEEecchhch
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD-VYDLELTAVKDNTELRKL---LIETT--SKSIIVIEDIDCS 307 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~-i~~l~l~~~~~~~~l~~l---~~~~~--~~~Il~iDdiD~~ 307 (500)
-++++||.+|||||+++-+...+.-. +|...+....+...+... +.... .+..||||||++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc
Confidence 78999999999999998888887654 444444444333333222 22222 4589999999884
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.49 E-value=0.00036 Score=62.31 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=40.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc------c--CChHHHHHHH---HhhcCCeEEEecchhch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA------V--KDNTELRKLL---IETTSKSIIVIEDIDCS 307 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~------~--~~~~~l~~l~---~~~~~~~Il~iDdiD~~ 307 (500)
.-+.|.||+|+|||||+++|++.+...-..+.+.. + -+....+++. .-..+|.++++||-..-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 35889999999999999999998765433222211 0 1222233222 22357899999998653
No 304
>PRK00625 shikimate kinase; Provisional
Probab=97.48 E-value=9.3e-05 Score=68.25 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=28.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|.|+||+||||+++.+|..+++++++++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999998765
No 305
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.48 E-value=0.00085 Score=71.62 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=96.4
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcc--cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc----c--
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWK--RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA----V-- 280 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~--rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~----~-- 280 (500)
|.++.|.+.+|.-|+- ..+.+-..+..-|.+.+ -+++++|.||||||-+.++.++.+-..+|.-.-.+ +
T Consensus 344 ~PsIyGhe~VK~GilL---~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL---SLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHH---HHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 5677888888887743 23343333444444443 23899999999999999999999988888642211 1
Q ss_pred ---CChHHHHHHHHh-----hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 281 ---KDNTELRKLLIE-----TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 281 ---~~~~~l~~l~~~-----~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
.+.. --....+ ...+.|-.|||+|..- .+ +. -.++
T Consensus 421 aVvkD~e-sgdf~iEAGALmLADnGICCIDEFDKMd----~~------dq--------------------------vAih 463 (764)
T KOG0480|consen 421 AVVKDEE-SGDFTIEAGALMLADNGICCIDEFDKMD----VK------DQ--------------------------VAIH 463 (764)
T ss_pred EEEecCC-CCceeeecCcEEEccCceEEechhcccC----hH------hH--------------------------HHHH
Confidence 1110 0011111 1357899999999841 10 00 1122
Q ss_pred HHHh---------hhhhccCCCeEEEEEcCCcC-------------cccHHHhcCCeeeEE-EEccCCCHHHHHHHHHHh
Q 041423 353 NFID---------GLWSACGGERLIVFTTNYVE-------------KLDPALIRRGRMDKH-IELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 353 ~~ld---------g~~~~~~~~~ivI~TTN~~~-------------~lD~aLlr~GR~d~~-I~~~~p~~~~~~~l~~~~ 409 (500)
..|+ |+...-+...-|++++|+.. .++++++. |||.. |-+..|++..=..|.++.
T Consensus 464 EAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hI 541 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHI 541 (764)
T ss_pred HHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHH
Confidence 2222 11111111235777888653 36789999 99865 467889988777777777
Q ss_pred hcc
Q 041423 410 LNV 412 (500)
Q Consensus 410 l~~ 412 (500)
+..
T Consensus 542 ld~ 544 (764)
T KOG0480|consen 542 LDL 544 (764)
T ss_pred HHH
Confidence 653
No 306
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00051 Score=65.70 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=33.0
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCE-----EEEeecccCChHHHHHHHHhh
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDV-----YDLELTAVKDNTELRKLLIET 293 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i-----~~l~l~~~~~~~~l~~l~~~~ 293 (500)
+.-...++||+|+|||||++.++++.-..- +--.........++++.++-.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v 111 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence 344589999999999999999999875531 111222223336676665443
No 307
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.47 E-value=0.00083 Score=62.19 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=23.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
+|++||||||||+++..++... |.++..+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998876643 556655554
No 308
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.46 E-value=0.0002 Score=71.78 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=57.5
Q ss_pred CCcccceeeeCCCCCcHHHHHHHHHHHhCCCE-EEEeeccc--CChHHHHHHH----------Hhh-cCCeEEEecchhc
Q 041423 241 KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV-YDLELTAV--KDNTELRKLL----------IET-TSKSIIVIEDIDC 306 (500)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i-~~l~l~~~--~~~~~l~~l~----------~~~-~~~~Il~iDdiD~ 306 (500)
-.+++|+.||||-|+|||.|.-..-..+..+- ..+-.... ..-.++..+- .+. .+--+|+|||+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee
Confidence 44678999999999999999998887764432 11111000 0001111111 111 2346899999975
Q ss_pred hhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC
Q 041423 307 SLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY 374 (500)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~ 374 (500)
.+......++.|++.|= ..++++|+|+|.
T Consensus 142 ---------------------------------tDI~DAMiL~rL~~~Lf------~~GV~lvaTSN~ 170 (367)
T COG1485 142 ---------------------------------TDIADAMILGRLLEALF------ARGVVLVATSNT 170 (367)
T ss_pred ---------------------------------cChHHHHHHHHHHHHHH------HCCcEEEEeCCC
Confidence 33344567777776653 246899999994
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=8.3e-05 Score=65.78 Aligned_cols=24 Identities=46% Similarity=0.791 Sum_probs=22.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+++.|||||||||+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 689999999999999999999993
No 310
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.44 E-value=0.00069 Score=62.36 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=24.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+|+|||||+++|++.+...-..+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 488999999999999999999876553333
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.43 E-value=0.00062 Score=67.88 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=28.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh----C-CCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL----N-YDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~l~~ 279 (500)
+.++|+||+|+||||++..+|.++ + ..+..+++..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 358899999999999999999876 3 5677776654
No 312
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00016 Score=69.32 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++||+.+.+.-..+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 60 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 488999999999999999999887665554443
No 313
>PF14516 AAA_35: AAA-like domain
Probab=97.42 E-value=0.0033 Score=64.16 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV 280 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~ 280 (500)
.-+.++||..+||||++..+...+ ++..+.+++..+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 357899999999999999888766 667777877765
No 314
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00011 Score=67.07 Aligned_cols=32 Identities=38% Similarity=0.443 Sum_probs=29.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
+.+.|.|++|+||||+.+++|..|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46899999999999999999999999999754
No 315
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.41 E-value=0.00016 Score=72.76 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=27.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.|++.+.+.-..+.+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g 63 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG 63 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 4889999999999999999998877755554433
No 316
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.41 E-value=0.0011 Score=69.63 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=67.0
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNT 284 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~ 284 (500)
.+..++|.....+++.+.+...-.. .-.+|++|++||||-.+|++|-..- +.||+.+||..+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3567888888888888777655543 3469999999999999999998866 5599999999984432
Q ss_pred HHHHHHHhh-----------------cCCeEEEecchhch
Q 041423 285 ELRKLLIET-----------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 285 ~l~~l~~~~-----------------~~~~Il~iDdiD~~ 307 (500)
-=..+|+.. .....||||||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 223456532 24689999999763
No 317
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.41 E-value=0.00085 Score=64.33 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---C------CCEEEEeecccCChHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---N------YDVYDLELTAVKDNTELRKL 289 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~------~~i~~l~l~~~~~~~~l~~l 289 (500)
|++...-+.|+||||+|||+++..+|... + ..++.++....-....+.++
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~ 73 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQL 73 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHH
Confidence 56666668999999999999999888653 2 44555555443233344443
No 318
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.41 E-value=0.0013 Score=60.43 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=41.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC-----------------------hHHHHHHHHhhcCCeEEEecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD-----------------------NTELRKLLIETTSKSIIVIED 303 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~-----------------------~~~l~~l~~~~~~~~Il~iDd 303 (500)
+|+.||||+|||+++..++...+.+.+.+.....-+ ..+|.+.+...+.+.+++||.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 588999999999999999988777777665543321 123334443333456788887
Q ss_pred hhchh
Q 041423 304 IDCSL 308 (500)
Q Consensus 304 iD~~~ 308 (500)
+....
T Consensus 82 lt~~~ 86 (169)
T cd00544 82 LTLWV 86 (169)
T ss_pred HhHHH
Confidence 76653
No 319
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00073 Score=62.04 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=25.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
.-+.|.||+|+|||||+++|++.+...-..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 3488999999999999999999876553333
No 320
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.39 E-value=0.00015 Score=73.06 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 64 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 488999999999999999999887665555443
No 321
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.38 E-value=0.00017 Score=68.92 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 38899999999999999999988665444443
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.38 E-value=0.0015 Score=63.19 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHH-HHHh--CCCEEEEe
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAM-ANLL--NYDVYDLE 276 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~ai-A~~l--~~~i~~l~ 276 (500)
|++...-+++.||||||||+++..+ ++.+ +.....++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5666666999999999999997544 4443 44555554
No 323
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00016 Score=68.59 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 478999999999999999999876665555443
No 324
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00015 Score=70.14 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
.-+.|.||+|+|||||+++||+.+...-..+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3488999999999999999999987654444433
No 325
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00014 Score=63.97 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=28.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.++|+.|-|||||||++..+|..++++.+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 34799999999999999999999999987754
No 326
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00033 Score=64.97 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhc
Q 041423 340 EEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIR 384 (500)
Q Consensus 340 ~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr 384 (500)
+++.++.++.....+.|-+.....++++|||+|+..+.+. ||-.
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eve-alCD 201 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVE-ALCD 201 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHH-Hhhh
Confidence 3677788888888888877777778999999999887654 4544
No 327
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00013 Score=68.47 Aligned_cols=97 Identities=22% Similarity=0.340 Sum_probs=53.0
Q ss_pred HHHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc--cCChHHHHHHHHh---hcC-----CeEEEec
Q 041423 235 FYARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA--VKDNTELRKLLIE---TTS-----KSIIVIE 302 (500)
Q Consensus 235 ~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~--~~~~~~l~~l~~~---~~~-----~~Il~iD 302 (500)
.++.+.....+| +.+.||+|||||||+++|...-..+-..|.... +....++.++-.. ..+ |..-++|
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 344444445555 889999999999999999987666655554443 2222233332222 222 5666777
Q ss_pred chhchh-cccCcchhhhcccchHHHhhhhh
Q 041423 303 DIDCSL-DLTGQRKKKAEKSSDDEKEKLDK 331 (500)
Q Consensus 303 diD~~~-~~~g~~~~~~~~~~~~~~~~~~~ 331 (500)
++--.. ...|..+....+.+.+.++.++.
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL 126 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGL 126 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCc
Confidence 774321 12344444444444444444433
No 328
>PRK13948 shikimate kinase; Provisional
Probab=97.35 E-value=0.0002 Score=66.64 Aligned_cols=35 Identities=26% Similarity=0.139 Sum_probs=31.3
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
+.++.++|.|++||||||+++.+|..++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999998765
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0022 Score=72.15 Aligned_cols=148 Identities=19% Similarity=0.297 Sum_probs=88.5
Q ss_pred cccccCC-hhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEee
Q 041423 209 FETMALE-PEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLEL 277 (500)
Q Consensus 209 ~~~l~~~-~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l 277 (500)
++.++|. ++..+.+++.+. ..-+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5666775 444444444332 1223689999999999999999999854 344666776
Q ss_pred cccC--------ChHHHHHHHHh---hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchh
Q 041423 278 TAVK--------DNTELRKLLIE---TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKV 346 (500)
Q Consensus 278 ~~~~--------~~~~l~~l~~~---~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
..+. -...+..+... ...+.||+|||++.+.. ... . ....
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg---~g~-------------------------~-~~~~ 302 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVG---SGS-------------------------N-YGAI 302 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeec---CCC-------------------------c-chHH
Confidence 6441 23455666654 34678999999999752 211 0 1122
Q ss_pred cHhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHH
Q 041423 347 TLSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLA 406 (500)
Q Consensus 347 ~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~ 406 (500)
....+|..+- ..++.-+|.||..-+ .-||||-| ||+. +.++.|+.+....++
T Consensus 303 d~~nlLkp~L-----~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL 359 (898)
T KOG1051|consen 303 DAANLLKPLL-----ARGGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLIL 359 (898)
T ss_pred HHHHhhHHHH-----hcCCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhh
Confidence 2223332221 123366777665322 24899999 8976 678888866544443
No 330
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00023 Score=69.05 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=26.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+.|.||+|+|||||+++|.+.+.+.-..+.+.
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~ 64 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCcceEEEc
Confidence 67999999999999999999887765555543
No 331
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.33 E-value=0.0015 Score=67.75 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL-NYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
.++++.||||||||+++.+++.+. -..-...+...+-.+- -.+.+......-+|+|||+.-
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgy 271 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI-STRQIGLVGRWDVVAFDEVAT 271 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCC
Confidence 489999999999999999988762 1000111111110000 014445556788999999975
No 332
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.33 E-value=0.00017 Score=66.77 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++++|||||||||+++.||..++...+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999875544
No 333
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.32 E-value=0.0014 Score=61.90 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+-++|.||+|+||||+++.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4589999999999999999993
No 334
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.32 E-value=0.0024 Score=65.42 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.++.||||||||+|++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999997743
No 335
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.32 E-value=0.0015 Score=65.93 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
|+|..+-++++||||||||+|+..++... +..+..++.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 56666668999999999999987665433 445555544
No 336
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.0002 Score=66.61 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|.|+||+||||++++|+..++.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3889999999999999999999999876644
No 337
>PRK14531 adenylate kinase; Provisional
Probab=97.31 E-value=0.00021 Score=66.44 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+-++++||||+||||+++.+|..+|.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 358999999999999999999999987654
No 338
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.30 E-value=0.00046 Score=63.48 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
-+|+.||||||||+++..++..++.+++.+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 37899999999999999999998887776655443
No 339
>PRK14532 adenylate kinase; Provisional
Probab=97.30 E-value=0.00019 Score=66.91 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=25.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.|||||||||+++.||..++...++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 37899999999999999999999877654
No 340
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.30 E-value=0.00039 Score=70.28 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 214 LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 214 ~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
++++.++.+.+.++..+.... -+..+..++|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 456666666666665554321 2344557999999999999999999999999998543
No 341
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.30 E-value=0.00019 Score=65.24 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=23.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
++|.|||||||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 342
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.29 E-value=0.0002 Score=64.03 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
++|.||||+||||+++.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 689999999999999999999876554
No 343
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.28 E-value=0.00083 Score=65.61 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=35.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC---EE-EEeecccCChHHHHHHHHhhcCCeEEEecchhc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD---VY-DLELTAVKDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~---i~-~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
-++|.||+|||||+|++.+++.+... ++ .+-... +...++.+++... .+++|....|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~-er~~ev~el~~~I--~~~~v~~~~~~ 79 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID-ERPEEVTDMQRSV--KGEVIASTFDE 79 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEcc-CCCccHHHHHHHh--ccEEEEecCCC
Confidence 38999999999999999999988653 22 111111 1112344444333 55666666654
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.28 E-value=0.00023 Score=63.12 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
+.+.|+|||||||+++.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999988766
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=97.27 E-value=0.0029 Score=61.18 Aligned_cols=39 Identities=21% Similarity=0.034 Sum_probs=29.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++...-+++.|+||+|||+++-.+|... |.+++.+++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 45555668999999999999998776644 6666665554
No 346
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.27 E-value=0.00024 Score=65.46 Aligned_cols=34 Identities=44% Similarity=0.681 Sum_probs=29.7
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
+..++|.||+|+||||+++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3468999999999999999999999999876553
No 347
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.27 E-value=0.0013 Score=62.17 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.4
Q ss_pred cceeeeCCCCCcHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMA 265 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA 265 (500)
+.++|.||+|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 348
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.27 E-value=0.001 Score=66.94 Aligned_cols=138 Identities=23% Similarity=0.306 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCe
Q 041423 218 KKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKS 297 (500)
Q Consensus 218 ~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~ 297 (500)
..+.|.+.|.....+ +|.+|.+||-||-.|||||||+|+-+.++-....+++. .+.|.--++-+-...
T Consensus 137 ~~~~i~~iL~~lv~N--------~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p----~dkl~FELG~AiDQf 204 (417)
T PF06431_consen 137 FDDVILEILKCLVEN--------IPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP----PDKLNFELGCAIDQF 204 (417)
T ss_dssp HHHHHHHHHHHHHHT--------BTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-----TTTHHHHHCCCTT-S
T ss_pred hHHHHHHHHHHHhcC--------CCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCC----hhhcchhhheeeceE
Confidence 344455555555544 67889999999999999999999999998776665554 345666666667788
Q ss_pred EEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc-----cCCCe-----E
Q 041423 298 IIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA-----CGGER-----L 367 (500)
Q Consensus 298 Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~-----~~~~~-----i 367 (500)
.++|||+- |+...+.. . ..+..-..+..|...+||--.- ....+ -
T Consensus 205 mVvFEDVK------Gq~~~~~~-------------L------p~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPP 259 (417)
T PF06431_consen 205 MVVFEDVK------GQPSDNKD-------------L------PPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPP 259 (417)
T ss_dssp EEEEEEE--------SSTTTTT-----------------------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----
T ss_pred EEEEEecC------CCcCCCCC-------------C------CCCCCcccchhhhhhccCceeechhhhhcccccccCCC
Confidence 99999984 33211100 0 1222234556666667764110 00111 2
Q ss_pred EEEEcCCcCcccHHHhcCCeeeEEEEcc
Q 041423 368 IVFTTNYVEKLDPALIRRGRMDKHIELS 395 (500)
Q Consensus 368 vI~TTN~~~~lD~aLlr~GR~d~~I~~~ 395 (500)
-|+|+|.- .|+..+.- ||-..+.|.
T Consensus 260 gIvTmNeY-~iP~Tv~v--Rf~~~~~F~ 284 (417)
T PF06431_consen 260 GIVTMNEY-KIPQTVKV--RFCKVLDFR 284 (417)
T ss_dssp EEEEESS--B--HHHHT--TEEEEEE--
T ss_pred ceEeeccc-cCCcceee--eeEeeEecc
Confidence 46788864 57888877 898888886
No 349
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00023 Score=63.64 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=25.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+-+-|||||||||+++-||.++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999875
No 350
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.27 E-value=0.0011 Score=61.28 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=26.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
.-+.|.||+|+|||||+++|++.....-..+.+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 348899999999999999999987655444433
No 351
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.27 E-value=0.00039 Score=66.30 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 63 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN 63 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 488999999999999999999887665555444
No 352
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.0019 Score=57.90 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+++.||||+||||++.-+|+.|.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 588999999999999999998773
No 353
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.26 E-value=0.0014 Score=62.87 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=40.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHH-Hh----CCCE---------E-EE--eec---ccC--------ChHHHHHHHHhhcCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN-LL----NYDV---------Y-DL--ELT---AVK--------DNTELRKLLIETTSK 296 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~-~l----~~~i---------~-~l--~l~---~~~--------~~~~l~~l~~~~~~~ 296 (500)
+-++|.||+|+|||++.+.++. .+ |..+ + .+ ... ++. .-.++..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 4589999999999999999988 22 2211 1 00 111 010 112455667777889
Q ss_pred eEEEecchhc
Q 041423 297 SIIVIEDIDC 306 (500)
Q Consensus 297 ~Il~iDdiD~ 306 (500)
+++++||+..
T Consensus 112 sLvllDE~~~ 121 (222)
T cd03287 112 SLVILDELGR 121 (222)
T ss_pred eEEEEccCCC
Confidence 9999999864
No 354
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.25 E-value=0.00055 Score=75.31 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=42.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+|..|+.++|+++.++.|...+. . ++.++|+||||||||++++++|..+...
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~----~-----------~~~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAK----Q-----------RRHVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHH----h-----------CCeEEEECCCCCcHHHHHHHHHHHcChH
Confidence 347889999999888876654332 1 2479999999999999999999987643
No 355
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.25 E-value=0.00022 Score=65.80 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=26.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCC---EEEEeeccc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYD---VYDLELTAV 280 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~l~~~ 280 (500)
++.++|+||||+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4679999999999999999988877544 666777665
No 356
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.24 E-value=0.013 Score=67.81 Aligned_cols=33 Identities=33% Similarity=0.355 Sum_probs=27.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+-++++||+|.||||++...+...+ ++.-+++.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 4589999999999999999887777 66666654
No 357
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.24 E-value=0.00024 Score=67.64 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 62 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 388999999999999999999886654444433
No 358
>PRK08233 hypothetical protein; Provisional
Probab=97.22 E-value=0.0029 Score=58.24 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+.+.|+||+||||+++.||..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 366789999999999999999885
No 359
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.0003 Score=67.20 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.||||+||||+++.||..++++.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 58999999999999999999999987664
No 360
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.20 E-value=0.00028 Score=65.88 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=25.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.||||+||||+++.||..++...+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999999877654
No 361
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.00062 Score=74.66 Aligned_cols=93 Identities=25% Similarity=0.314 Sum_probs=53.0
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccc---eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec-c------
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRG---YLLYGPPGTGKSTMIAAMANLLNYDVYDLELT-A------ 279 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg---~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~-~------ 279 (500)
-++.|.+.+|+.|.-.+ +.+......-|. +=|| +||.|.||||||.|.+.+++.+-..+|.---. +
T Consensus 286 PsIyG~e~VKkAilLqL---fgGv~k~~~~g~-~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQL---FGGVKKNLPDGT-RIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHh---cCCCcccCCCCc-ccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCcee
Confidence 35667777777764322 111111111111 1233 89999999999999999999988777742111 1
Q ss_pred --cCChHHHHHHHHhh-----cCCeEEEecchhch
Q 041423 280 --VKDNTELRKLLIET-----TSKSIIVIEDIDCS 307 (500)
Q Consensus 280 --~~~~~~l~~l~~~~-----~~~~Il~iDdiD~~ 307 (500)
..+.. .-.+..+. +.++|..|||+|..
T Consensus 362 av~rd~~-tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 362 AVVRDKV-TGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred EEEEccC-CCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 11111 01111111 35899999999974
No 362
>PRK13946 shikimate kinase; Provisional
Probab=97.19 E-value=0.00029 Score=65.62 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=30.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
++.++|.|+||||||++++.+|..||+++++.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999988755
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.19 E-value=0.0017 Score=63.91 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++...-++++||||||||+++..+|... +.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56666669999999999999999876542 5677777775
No 364
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.19 E-value=0.0015 Score=59.50 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+..++.||+|+|||+++++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999986543
No 365
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0048 Score=65.05 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=27.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~ 279 (500)
+.++|.||+|+||||++..||..+ +..+..+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 458899999999999999998765 34566666654
No 366
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.18 E-value=0.0004 Score=71.17 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||++.|++...++-..+.+.
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~ 65 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVD 65 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 478999999999999999999988775555443
No 367
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.18 E-value=0.00024 Score=73.13 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=27.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||.+.||+....+-..+.+.
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~ 64 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCceEEEEC
Confidence 488999999999999999999987776555443
No 368
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.18 E-value=0.00046 Score=65.66 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||++.||+.+...-..+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVN 61 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 488999999999999999999887665555443
No 369
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.18 E-value=0.00024 Score=73.29 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|||||||+++|++.....-..+-+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i 52 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI 52 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCceEEEE
Confidence 48899999999999999999998776554443
No 370
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.18 E-value=0.0023 Score=61.41 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecccCChHHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTAVKDNTELRKLLIE 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~~~~~~~l~~l~~~ 292 (500)
|+|.+..+|+.||||||||+|+..++... +.+++.+++.. ....+.+-+..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee--~~~~l~~~~~s 69 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE--PPEELIENMKS 69 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS---HHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC--CHHHHHHHHHH
Confidence 66776779999999999999998766432 77887777643 34455544443
No 371
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.18 E-value=0.00024 Score=73.19 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=28.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|||||||+++||+.....-..+.+..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g 65 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG 65 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECC
Confidence 3789999999999999999999877766555443
No 372
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.17 E-value=0.0019 Score=59.87 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=24.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+|+|||||++.|++.+...-..+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v 56 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEI 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 488999999999999999999876553333
No 373
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.17 E-value=0.0024 Score=66.71 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCC
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKD 282 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~ 282 (500)
...+..+||......++++.|..-... .-.+||.|..||||..+|++|=..- +.|++.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 346788999999999998888765554 3479999999999999999998765 67899999998843
Q ss_pred hHHHHHHHHhh-----------------cCCeEEEecchhch
Q 041423 283 NTELRKLLIET-----------------TSKSIIVIEDIDCS 307 (500)
Q Consensus 283 ~~~l~~l~~~~-----------------~~~~Il~iDdiD~~ 307 (500)
.=-=..+|+.. ..++-||+|||.-+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 21113444332 24688999999753
No 374
>PRK06762 hypothetical protein; Provisional
Probab=97.16 E-value=0.00044 Score=63.04 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.-++|.|+|||||||+++.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 35789999999999999999999976665554
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0056 Score=63.17 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc
Q 041423 216 PEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV 280 (500)
Q Consensus 216 ~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~ 280 (500)
.+.++.+.+.+...+.....+ ...++-++|.||+|+||||++..||..+ +..+..+++...
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 345556666665555432111 1123568999999999999999999877 445666655443
No 376
>PF13245 AAA_19: Part of AAA domain
Probab=97.15 E-value=0.00059 Score=53.90 Aligned_cols=32 Identities=47% Similarity=0.750 Sum_probs=21.4
Q ss_pred eeeeCCCCCcHH-HHHHHHHHHh------CCCEEEEeec
Q 041423 247 YLLYGPPGTGKS-TMIAAMANLL------NYDVYDLELT 278 (500)
Q Consensus 247 ~LL~GPpGtGKT-sla~aiA~~l------~~~i~~l~l~ 278 (500)
+++.|||||||| +++..++..+ +..+..+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 455999999999 5555666655 4445555443
No 377
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.15 E-value=0.00042 Score=63.50 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=28.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++|.|+|||||||+++.+|..++.++++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5889999999999999999999999988654
No 378
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.15 E-value=0.00042 Score=66.15 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=25.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 48899999999999999999987655444433
No 379
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.15 E-value=0.0016 Score=67.27 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=24.0
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+.++| +++.||||||||++++.|++.+..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 34444 899999999999999999998643
No 380
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.0083 Score=58.03 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 364 GERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 364 ~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
-+..+|+++...-.|+|.++. -++..+-+. -+......|++++...
T Consensus 127 ~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 127 YNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred cceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 457888899998999999866 788888776 5677788888877543
No 381
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.14 E-value=0.00041 Score=64.33 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+++.||||+||||+++.+|..+|...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999999876543
No 382
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.14 E-value=0.001 Score=62.63 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhch
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCS 307 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~ 307 (500)
|....--++|.|+.|+|||++++.|+... +.-+.....+.+.+. .+....|+.+||++.+
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~~~----~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDFLE----QLQGKWIVELDELDGL 107 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHHHH----HHHHhHheeHHHHhhc
Confidence 55444457899999999999999996652 221222222222222 3344578999999874
No 383
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.13 E-value=0.0034 Score=60.06 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+-++|.||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3578999999999999999975
No 384
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00034 Score=68.04 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=26.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
.-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 348899999999999999999987665444433
No 385
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0029 Score=64.01 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
|+|..+-+.+|||||||||+|+-.++... +.....++.
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 56666668999999999999998766433 555655554
No 386
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00031 Score=69.78 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 62 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS 62 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 488999999999999999999887654444443
No 387
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.12 E-value=0.0016 Score=62.25 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 241 KAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 241 ~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
...++| +.+.||+|||||||...+++...+.-..+
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 334455 78999999999999999999887764443
No 388
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.12 E-value=0.0029 Score=57.81 Aligned_cols=27 Identities=41% Similarity=0.724 Sum_probs=23.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.-+.|.||+|+|||||+++|++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 348999999999999999999987544
No 389
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.12 E-value=0.00052 Score=66.58 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 488999999999999999999886654544443
No 390
>PRK06547 hypothetical protein; Provisional
Probab=97.11 E-value=0.00073 Score=62.25 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.-+++.||+||||||+++.+|..++.+++.+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 44688899999999999999999988776654
No 391
>PRK02496 adk adenylate kinase; Provisional
Probab=97.11 E-value=0.00039 Score=64.58 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=25.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+++.||||+||||+++.||..++.+.+.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 7899999999999999999999987654
No 392
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00071 Score=65.44 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=28.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-++|.||+|+|||||++.+++.+......+-+..
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g 65 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECC
Confidence 34899999999999999999999987765554433
No 393
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.0027 Score=60.18 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+-++|.||+|+|||++++.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999874
No 394
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.09 E-value=0.00076 Score=64.01 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=26.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 38899999999999999999988665444443
No 395
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.09 E-value=0.0013 Score=64.22 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=54.0
Q ss_pred cccceeeeCCCCCcHHHHHHHHHH------HhCCCEEEEeecccCChHHHHHHHHhhc-----------------CCeEE
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMAN------LLNYDVYDLELTAVKDNTELRKLLIETT-----------------SKSII 299 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~------~l~~~i~~l~l~~~~~~~~l~~l~~~~~-----------------~~~Il 299 (500)
.+..+||.||.|.|||.|++.|.. .+.-+++.++|..+..+..+..+|+..+ ...++
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml 286 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML 286 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence 345699999999999999998864 4677899999999998888888886653 35899
Q ss_pred Eecchhch
Q 041423 300 VIEDIDCS 307 (500)
Q Consensus 300 ~iDdiD~~ 307 (500)
|+|||..+
T Consensus 287 fldeigel 294 (531)
T COG4650 287 FLDEIGEL 294 (531)
T ss_pred ehHhhhhc
Confidence 99999764
No 396
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.09 E-value=0.0008 Score=52.01 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=23.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh-CCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL-NYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l-~~~i~~l 275 (500)
+.+.|+||+|||+++++++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5688999999999999999997 3444443
No 397
>PRK14528 adenylate kinase; Provisional
Probab=97.09 E-value=0.00046 Score=64.43 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=26.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.+++.||||+||||+++.+|..++.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 48899999999999999999999987654
No 398
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.09 E-value=0.0021 Score=59.96 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=37.3
Q ss_pred eeeeCCCCCcHHHHHHHHHH-----HhCCCEE--------------EEeeccc-C--------ChHHHHHHHHhhcCCeE
Q 041423 247 YLLYGPPGTGKSTMIAAMAN-----LLNYDVY--------------DLELTAV-K--------DNTELRKLLIETTSKSI 298 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~-----~l~~~i~--------------~l~l~~~-~--------~~~~l~~l~~~~~~~~I 298 (500)
++|.||+|+|||++++.++- ..|..+. .+...+. . .-..+..++.....|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 2333321 1111110 0 01123445555568999
Q ss_pred EEecchhc
Q 041423 299 IVIEDIDC 306 (500)
Q Consensus 299 l~iDdiD~ 306 (500)
+++||.-.
T Consensus 82 lllDEp~~ 89 (185)
T smart00534 82 VLLDELGR 89 (185)
T ss_pred EEEecCCC
Confidence 99999965
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.09 E-value=0.0018 Score=62.51 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=34.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---------CCCEEEEeecccCChHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---------NYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
|++...-+.|+||||||||+++..+|... +..++.++...--....+..++
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 56666668999999999999999988543 1455556655433344555444
No 400
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.08 E-value=0.00097 Score=65.95 Aligned_cols=90 Identities=23% Similarity=0.406 Sum_probs=54.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC---EEEEee-ccc
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD---VYDLEL-TAV 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~l-~~~ 280 (500)
.+.+++++...+...+.+.+.+...++. +..+++.||+||||||+++++..++... ++.+.- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3447888887766666665555443332 4579999999999999999999988554 333321 000
Q ss_pred -------------CChHHHHHHHHhh--cCCeEEEecchh
Q 041423 281 -------------KDNTELRKLLIET--TSKSIIVIEDID 305 (500)
Q Consensus 281 -------------~~~~~l~~l~~~~--~~~~Il~iDdiD 305 (500)
.....+..++..+ ..|.+|++.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1222344444443 357889998884
No 401
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00079 Score=66.62 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~ 69 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYN 69 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 488999999999999999999887655544443
No 402
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00053 Score=68.60 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.|++.+...-..+.+..
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 3889999999999999999998877655554433
No 403
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.07 E-value=0.0032 Score=59.24 Aligned_cols=35 Identities=43% Similarity=0.593 Sum_probs=25.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
+-.++.||||||||++++.++..+ +..++.+..+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 357788999999999999988765 56666665554
No 404
>PF13479 AAA_24: AAA domain
Probab=97.07 E-value=0.0024 Score=60.97 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=38.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---------------CChHHHHHHHHhh----cCCeEEEecchhc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---------------KDNTELRKLLIET----TSKSIIVIEDIDC 306 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---------------~~~~~l~~l~~~~----~~~~Il~iDdiD~ 306 (500)
.++||||||+|||+++..+ .+.+.|++..- .+-.++...+... ..--.||||.++.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~-----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL-----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred EEEEECCCCCCHHHHHHhC-----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 4899999999999999888 22233332221 2344555555432 3457899999988
Q ss_pred hhc
Q 041423 307 SLD 309 (500)
Q Consensus 307 ~~~ 309 (500)
+..
T Consensus 80 ~~~ 82 (213)
T PF13479_consen 80 LED 82 (213)
T ss_pred HHH
Confidence 643
No 405
>PRK04296 thymidine kinase; Provisional
Probab=97.07 E-value=0.0069 Score=56.68 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=23.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 275 (500)
-.+++||||+||||++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36889999999999998887765 4455544
No 406
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.06 E-value=0.0027 Score=67.41 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++...-++|+||||+|||+|+..+|... +.+++.++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56666668999999999999999998765 5566666543
No 407
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.06 E-value=0.00038 Score=67.15 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=25.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 48899999999999999999987665444433
No 408
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.0026 Score=61.76 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 236 YARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 236 ~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
..++.+..|.| +++.||+|.||||+++.+.+.+.+.-..+...+.
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~ 86 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCc
Confidence 34444444445 8899999999999999999988776555544443
No 409
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.04 E-value=0.00046 Score=63.66 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=26.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+-++|.||||+||||++++++..++.+++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 3588999999999999999999988766543
No 410
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00083 Score=66.67 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+...-..+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 66 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG 66 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence 4889999999999999999998876655554443
No 411
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.03 E-value=0.0025 Score=65.97 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
|++...-++|+||||+|||+|+..+|..+ +.+++.++.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666668999999999999999998765 235655544
No 412
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00041 Score=69.19 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+...-..+.+..
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g 67 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG 67 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECC
Confidence 3889999999999999999998876655554443
No 413
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.02 E-value=0.0068 Score=61.37 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=26.1
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
..+..+.|+||=|+||||+++.+-..+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455678999999999999999999988666
No 414
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.02 E-value=0.0013 Score=57.71 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.-++|.|+.|+||||+++++++.++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3458899999999999999999999864
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.02 E-value=0.00055 Score=66.06 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=26.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.||||+||||+++.+|..++.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999999987665
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.0024 Score=58.99 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
-+.|.||+|+|||||.++++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 488999999999999999964
No 417
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00029 Score=73.05 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++||+.+..+-..+.+
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 38899999999999999999988766555443
No 418
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.01 E-value=0.0047 Score=62.03 Aligned_cols=98 Identities=14% Similarity=0.232 Sum_probs=72.4
Q ss_pred ceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHH---hCCCEEE
Q 041423 198 WSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL---LNYDVYD 274 (500)
Q Consensus 198 w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~ 274 (500)
...+.+.+-..|+.+++.....+.++.....+-.- --.+|+.|..||||-.+|++--.. -..|+..
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFla 260 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLA 260 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeE
Confidence 34556777888999999888777777665544432 125899999999999999875432 3678999
Q ss_pred EeecccCChHHHHHHHHhhc------------CCeEEEecchhc
Q 041423 275 LELTAVKDNTELRKLLIETT------------SKSIIVIEDIDC 306 (500)
Q Consensus 275 l~l~~~~~~~~l~~l~~~~~------------~~~Il~iDdiD~ 306 (500)
++|.++-++..=..+|+..+ ...-+|+|+|--
T Consensus 261 lNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgE 304 (511)
T COG3283 261 LNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGE 304 (511)
T ss_pred eecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhh
Confidence 99999976655566776654 356788899865
No 419
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.99 E-value=0.00042 Score=71.51 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=27.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCE--EEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDV--YDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i--~~l~l~ 278 (500)
-+.|.||+|+|||||.+.||+....+- ..+.+.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~ 67 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIA 67 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEEC
Confidence 388999999999999999999887766 555443
No 420
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00037 Score=71.66 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||++.||+....+-..+.+.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~ 66 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 488999999999999999999987775555443
No 421
>PLN02200 adenylate kinase family protein
Probab=96.99 E-value=0.00073 Score=65.48 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
.-+++.|||||||||+++.+|..+|...
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~h 71 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKH 71 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4578999999999999999999998764
No 422
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.02 Score=55.05 Aligned_cols=124 Identities=11% Similarity=0.091 Sum_probs=87.9
Q ss_pred cceeeeCCCC-CcHHHHHHHHHHHh---------CCCEEEEeecc-------cCChHHHHHHHHhh---c---CCeEEEe
Q 041423 245 RGYLLYGPPG-TGKSTMIAAMANLL---------NYDVYDLELTA-------VKDNTELRKLLIET---T---SKSIIVI 301 (500)
Q Consensus 245 rg~LL~GPpG-tGKTsla~aiA~~l---------~~~i~~l~l~~-------~~~~~~l~~l~~~~---~---~~~Il~i 301 (500)
..|||.|..+ +||.-++.-++..+ .++++.+.... .-.-+.+|.+.... + ..-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 4799999998 99999988877765 34566665331 12334555554433 2 3579999
Q ss_pred cchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHH
Q 041423 302 EDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPA 381 (500)
Q Consensus 302 DdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~a 381 (500)
+++|.+- ...-+.||..++. .+.+.++|++|+.++.|.|.
T Consensus 96 ~~ae~mt------------------------------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpT 135 (263)
T PRK06581 96 YSAELMN------------------------------------LNAANSCLKILED----APKNSYIFLITSRAASIIST 135 (263)
T ss_pred echHHhC------------------------------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchh
Confidence 9999852 1244667777764 34568889999999999999
Q ss_pred HhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 382 LIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 382 Llr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
+++|+.. +.|..|....-.++...++.
T Consensus 136 IrSRCq~---i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 136 IRSRCFK---INVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred HhhceEE---EeCCCCCHHHHHHHHHHhcc
Confidence 9995555 99999998777777665553
No 423
>PLN02199 shikimate kinase
Probab=96.97 E-value=0.0014 Score=64.98 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=29.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
+.++|.|++|||||++++.+|+.+++++++.+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 57999999999999999999999999998754
No 424
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.001 Score=63.25 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=26.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 59 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 467999999999999999999886655555443
No 425
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.97 E-value=0.00065 Score=70.99 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||++.|++.+...-..+.+.
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~ 63 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEEC
Confidence 378999999999999999999887665555444
No 426
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.97 E-value=0.0008 Score=69.21 Aligned_cols=57 Identities=28% Similarity=0.452 Sum_probs=42.9
Q ss_pred CceeecccCC--CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 197 MWSHIVFEHP--ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 197 ~w~~~~~~~~--~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.|.-...++- .++++..+++.+++.|.+. .+|+|+-||||.||||+|+|+|.++...
T Consensus 232 ~~EITavRPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~~ 290 (604)
T COG1855 232 RWEITAVRPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYASQ 290 (604)
T ss_pred ceEEEEEeeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHhc
Confidence 4554333332 2678888888888888652 2599999999999999999999988544
No 427
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00049 Score=62.37 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=25.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+++.|.|||||||+++.++ .+|++++.+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 6899999999999999999 999987763
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.97 E-value=0.00064 Score=64.67 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=25.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+++.||||+||||+++.||..+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999877654
No 429
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.96 E-value=0.00039 Score=72.09 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 241 KAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 241 ~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+..++| +.|.||+|+|||||+++|++.+.+.-..+.+.
T Consensus 45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id 84 (382)
T TIGR03415 45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK 84 (382)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 334444 88999999999999999999987765555443
No 430
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00047 Score=69.56 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=26.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||++.|++.+...-..+.+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 38999999999999999999988665444433
No 431
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.0079 Score=58.35 Aligned_cols=49 Identities=24% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH---hCCCEEEEeecccCChHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL---LNYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
|++....+|++||||||||+++..++.. -|.+.+.+++.. +...+.+-+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 6777777999999999999999866543 266677776643 455554433
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.95 E-value=0.0051 Score=58.86 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=40.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHH-----hCCC---------EE---EEeecc---cC--------ChHHHHHHHHhhcC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANL-----LNYD---------VY---DLELTA---VK--------DNTELRKLLIETTS 295 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~---------i~---~l~l~~---~~--------~~~~l~~l~~~~~~ 295 (500)
.+.++|.||+|.|||++.+.++.. .|.. ++ ...+.. +. .-.++..++..+..
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 346899999999999999988863 2322 11 011110 10 11245567777788
Q ss_pred CeEEEecchhc
Q 041423 296 KSIIVIEDIDC 306 (500)
Q Consensus 296 ~~Il~iDdiD~ 306 (500)
+++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999854
No 433
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0021 Score=60.95 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=27.4
Q ss_pred hhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 238 RIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 238 ~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.+....+.| ..|.||+|+|||||+.+|+++-++.+.
T Consensus 22 gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt 59 (251)
T COG0396 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT 59 (251)
T ss_pred CcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe
Confidence 333344445 679999999999999999998877653
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.00074 Score=62.55 Aligned_cols=26 Identities=42% Similarity=0.736 Sum_probs=23.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.+++.||||+||||+|+.||+.++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999996554
No 435
>PRK14529 adenylate kinase; Provisional
Probab=96.95 E-value=0.0012 Score=63.30 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=25.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
++|.||||+||||+++.||..++.+.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999998765
No 436
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00095 Score=66.37 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=27.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIR 64 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 378999999999999999999887765555443
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.94 E-value=0.00071 Score=64.62 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=25.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++++||||+||||+++.||..++...+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 7899999999999999999999977665
No 438
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.0018 Score=63.54 Aligned_cols=32 Identities=38% Similarity=0.447 Sum_probs=26.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+...-..+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 38899999999999999999987665444443
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.92 E-value=0.00064 Score=63.38 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=25.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.||+|+||||+++.|++.++.++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 57899999999999999999998876543
No 440
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0046 Score=58.24 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=31.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC--ChHHHHHHH
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK--DNTELRKLL 290 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~--~~~~l~~l~ 290 (500)
|+-++|+||+|+||||++.-+|.++ +..+..+++.... ..+.|+.+-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a 52 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYA 52 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHH
Confidence 3568999999999999999999866 5556666655442 334444443
No 441
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.03 Score=54.01 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=23.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.-+.|.||+|+|||||++.+++.+...
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 357889999999999999999988654
No 442
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00062 Score=69.84 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||++.|++.+.+.-..+.+.
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~ 65 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 378999999999999999999987665555443
No 443
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.91 E-value=0.00052 Score=71.16 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=27.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||.++||+.....-..+.+.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~ 74 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 388999999999999999999887765555443
No 444
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.90 E-value=0.00063 Score=64.85 Aligned_cols=22 Identities=50% Similarity=0.869 Sum_probs=17.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (500)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998887777666
No 445
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00056 Score=70.99 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||.++||+....+-..+.+.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~ 79 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLD 79 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 478999999999999999999887765554443
No 446
>PRK06696 uridine kinase; Validated
Probab=96.90 E-value=0.0032 Score=60.47 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=32.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
.-+.+.|+|||||||+++.|+..| +.+++.+++.+.-.....
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~ 67 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVI 67 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHH
Confidence 357889999999999999999999 667777777666443333
No 447
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.89 E-value=0.00066 Score=58.47 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (500)
++|.|+|||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998
No 448
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.89 E-value=0.0056 Score=67.50 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=38.2
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----CChHHHHHHHHhhcCCeEE
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV----KDNTELRKLLIETTSKSII 299 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~----~~~~~l~~l~~~~~~~~Il 299 (500)
++.-+.+.||+|+|||||++.+++.+ ++-..+.+.+. -+...+++.+...++...|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL 434 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC
Confidence 34449999999999999999999988 55444433332 1345666666666655444
No 449
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.89 E-value=0.00075 Score=60.58 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.7
Q ss_pred eeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 249 LYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 249 L~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
|.||||+||||+++.||..+++..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 68999999999999999999876443
No 450
>PRK10908 cell division protein FtsE; Provisional
Probab=96.89 E-value=0.0014 Score=62.70 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+...-..+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS 62 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 488999999999999999999887665555443
No 451
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.88 E-value=0.0021 Score=64.99 Aligned_cols=65 Identities=26% Similarity=0.365 Sum_probs=45.9
Q ss_pred cc-cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEeeccc
Q 041423 209 FE-TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYDVYDLELTAV 280 (500)
Q Consensus 209 ~~-~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l~~~ 280 (500)
|+ .+.|.++..+++++.+..--.+ +-.-++-++|.||+|+||||+++.+-+.+ .+++|.+..+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 7889888888887755433322 12234568899999999999999999877 457777644443
No 452
>PRK14527 adenylate kinase; Provisional
Probab=96.87 E-value=0.00079 Score=63.01 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=25.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++++||||+||||+++.+|..++...+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 358999999999999999999999876543
No 453
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.0015 Score=65.05 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
.-+.|.||+|+|||||++.|++.+.+.-..+.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIID 67 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3489999999999999999999987665544443
No 454
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0079 Score=64.30 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=21.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+..+.|+||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999998764
No 455
>PRK04328 hypothetical protein; Provisional
Probab=96.85 E-value=0.011 Score=57.87 Aligned_cols=49 Identities=27% Similarity=0.282 Sum_probs=34.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH-h--CCCEEEEeecccCChHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL-L--NYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~-l--~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
|+|.+..+|++||||||||+|+..++.. + |.+.+.+++.. +...+.+.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~ 70 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNM 70 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHH
Confidence 6777777999999999999999876543 2 56677766654 444555443
No 456
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.011 Score=55.60 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~ 266 (500)
|+|.+.=+++.|+.|||||-|.+.+|-
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHH
Confidence 355544478999999999999998885
No 457
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.85 E-value=0.019 Score=55.61 Aligned_cols=62 Identities=23% Similarity=0.446 Sum_probs=39.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH-----hCCCE----EEEeec-----------ccC--------ChHHHHHHHHhhcCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL-----LNYDV----YDLELT-----------AVK--------DNTELRKLLIETTSK 296 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~-----l~~~i----~~l~l~-----------~~~--------~~~~l~~l~~~~~~~ 296 (500)
+.++|.||+.+|||++++.+|-. +|..+ ..+.+. ++. .-.++..++..+..+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 46899999999999999998853 23321 111111 110 113456777777889
Q ss_pred eEEEecchhc
Q 041423 297 SIIVIEDIDC 306 (500)
Q Consensus 297 ~Il~iDdiD~ 306 (500)
++++|||+-.
T Consensus 124 sLvliDE~g~ 133 (235)
T PF00488_consen 124 SLVLIDELGR 133 (235)
T ss_dssp EEEEEESTTT
T ss_pred eeeecccccC
Confidence 9999999954
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.84 E-value=0.0085 Score=64.44 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH----hCCCEEEEeecccCChHHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL----LNYDVYDLELTAVKDNTELRKLLIE 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~l~~~~~~~~l~~l~~~ 292 (500)
|++..+.+|+.||||||||+|+..++.. .+.+.+.+++. ++..++.+.+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 6777888999999999999999977432 25788877775 456666655444
No 459
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.003 Score=59.87 Aligned_cols=24 Identities=42% Similarity=0.805 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+.|+.|||||||||+.+-+|..+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhh
Confidence 578999999999999999998763
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=61.19 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=25.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.|+|||||||+++.+|..++++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6899999999999999999999988765
No 461
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.82 E-value=0.0042 Score=69.36 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=31.2
Q ss_pred hCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 239 IGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 239 ~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.....+.| +.+.|++|||||||++.|.+.+.+.-..+.+..
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 33444445 999999999999999999998877655544443
No 462
>PRK14526 adenylate kinase; Provisional
Probab=96.81 E-value=0.0012 Score=63.02 Aligned_cols=28 Identities=39% Similarity=0.743 Sum_probs=25.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.|||||||||+++.+|..++.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876543
No 463
>PRK04040 adenylate kinase; Provisional
Probab=96.80 E-value=0.0011 Score=61.91 Aligned_cols=28 Identities=29% Similarity=0.608 Sum_probs=24.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh--CCCE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL--NYDV 272 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l--~~~i 272 (500)
.-++++|+|||||||+++.++..+ +..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 357899999999999999999999 4444
No 464
>PRK01184 hypothetical protein; Provisional
Probab=96.79 E-value=0.0011 Score=61.55 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|||||||||+++ ++..++++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~ 30 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVV 30 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEE
Confidence 46899999999999887 78889887755
No 465
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.79 E-value=0.0015 Score=58.66 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=24.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLE 276 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (500)
+++.|+||+||||+++.++..+ +.+.+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5789999999999999999998 55555443
No 466
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.78 E-value=0.00099 Score=60.57 Aligned_cols=26 Identities=42% Similarity=0.680 Sum_probs=20.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
+.|.|+||||||||+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999998 76644
No 467
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.77 E-value=0.001 Score=81.58 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||++.|++.+.++-..+.+..
T Consensus 959 ~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G 991 (2272)
T TIGR01257 959 TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG 991 (2272)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCceEEEECC
Confidence 789999999999999999999987766554443
No 468
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0017 Score=64.69 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+...-..+.+..
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g 68 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG 68 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3889999999999999999999876655544433
No 469
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.77 E-value=0.00087 Score=68.22 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=43.4
Q ss_pred hCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--CC----hHHHHHHHHhhc-CCeEEEecchhchh
Q 041423 239 IGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--KD----NTELRKLLIETT-SKSIIVIEDIDCSL 308 (500)
Q Consensus 239 ~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~~----~~~l~~l~~~~~-~~~Il~iDdiD~~~ 308 (500)
+.+..+.| +.|.||+||||||+.++||+.-.++-..|.+..- .+ ...+.-+|.... -|..-|.|+|-.-+
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGL 102 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGL 102 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhh
Confidence 33445556 6699999999999999999998887665544432 11 111222232222 26666777776533
No 470
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.77 E-value=0.0074 Score=60.86 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEE----EeecccCChHHHHHHHHhhcCCeEEEecchhc
Q 041423 241 KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD----LELTAVKDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~----l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
.+...-++|+|+.|+|||+++..|...+|..... +.+...... +.-+.....+.+++.+|++.
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---CchhhhhcCCEEEEecCCCC
Confidence 3455678999999999999999999988865422 122222110 11123345678888999874
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.75 E-value=0.0013 Score=59.94 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=25.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+.+.|+||+|||++++.+|..++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 6799999999999999999999988765
No 472
>PRK10646 ADP-binding protein; Provisional
Probab=96.75 E-value=0.0097 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=23.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-++|.|+=|+|||+++++++..++.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999999875
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0018 Score=60.37 Aligned_cols=28 Identities=29% Similarity=0.613 Sum_probs=24.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+..+++.||+|+||||+++++++.+..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4569999999999999999999987643
No 474
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.74 E-value=0.0043 Score=63.18 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=21.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+|+|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 47899999999999999997766433
No 475
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0015 Score=68.36 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||++.|++.+.+.-..+.+
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i 87 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCEEEE
Confidence 38899999999999999999988766444433
No 476
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.73 E-value=0.0025 Score=57.55 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=44.1
Q ss_pred hCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----CChHHHHHHHHhhcCCeEEEecch
Q 041423 239 IGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV----KDNTELRKLLIETTSKSIIVIEDI 304 (500)
Q Consensus 239 ~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~----~~~~~l~~l~~~~~~~~Il~iDdi 304 (500)
......+| +++.||+|||||+|.+++|+...++...+-...- .+...++.-.....+.+-||=|-+
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 33334444 8999999999999999999988877655533321 245566766666666555554433
No 477
>PLN03211 ABC transporter G-25; Provisional
Probab=96.72 E-value=0.00073 Score=75.23 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=23.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||+++||+.+...
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~ 121 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN 121 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 38899999999999999999987653
No 478
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.71 E-value=0.00061 Score=65.04 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcC-----CeEEEecchhchhcccCcchhh
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTS-----KSIIVIEDIDCSLDLTGQRKKK 317 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~-----~~Il~iDdiD~~~~~~g~~~~~ 317 (500)
+.+-+-|.||+|.||||+.+.|.+.+.+.-..|....-.........++..|. |-.-+.|.+--+..+-|..+..
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 33447799999999999999999999998888877776556666666666652 4556777777777777776654
Q ss_pred hccc
Q 041423 318 AEKS 321 (500)
Q Consensus 318 ~~~~ 321 (500)
....
T Consensus 107 ~~~~ 110 (300)
T COG4152 107 IQKK 110 (300)
T ss_pred HHHH
Confidence 4433
No 479
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.70 E-value=0.0029 Score=54.76 Aligned_cols=63 Identities=32% Similarity=0.393 Sum_probs=40.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCC--------------------EEEEeecccCChHHHHHH--HHhhcCCeEEEe
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYD--------------------VYDLELTAVKDNTELRKL--LIETTSKSIIVI 301 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~--------------------i~~l~l~~~~~~~~l~~l--~~~~~~~~Il~i 301 (500)
..-++|+|+=|+|||+++++++..++.+ ++-+|+--+.+..++..+ +......+|.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 3458999999999999999999988653 333455555555554432 233356788888
Q ss_pred cchhc
Q 041423 302 EDIDC 306 (500)
Q Consensus 302 DdiD~ 306 (500)
|=-+.
T Consensus 95 EW~e~ 99 (123)
T PF02367_consen 95 EWPER 99 (123)
T ss_dssp ESGGG
T ss_pred ECccc
Confidence 75554
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.70 E-value=0.0018 Score=61.41 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+.|.||+|+|||||+++|++.++.
T Consensus 9 i~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999998864
No 481
>PHA00350 putative assembly protein
Probab=96.70 E-value=0.0057 Score=63.39 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=63.6
Q ss_pred eeeeCCCCCcHHHHHHH--HHHHh--CCCEEEEeecccCCh--------------------------HHHHHHHHhhcCC
Q 041423 247 YLLYGPPGTGKSTMIAA--MANLL--NYDVYDLELTAVKDN--------------------------TELRKLLIETTSK 296 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~a--iA~~l--~~~i~~l~l~~~~~~--------------------------~~l~~l~~~~~~~ 296 (500)
++++|+||+|||..+-. |-..+ |..++. ++..+.-+ ......+.-.+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p~g 82 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLNLDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRPRG 82 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHhhcccCcccceeEEeccccccchhhhccccccCCCC
Confidence 68899999999987654 33333 655543 44332110 0111112224567
Q ss_pred eEEEecchhchhcccCcchh-hhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc
Q 041423 297 SIIVIEDIDCSLDLTGQRKK-KAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV 375 (500)
Q Consensus 297 ~Il~iDdiD~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~ 375 (500)
++|||||+..+++....-+. +.... -.+............+++++.. .+..+.=||++|-++
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~--------------p~~~~~~~~~~~p~~~i~~l~~---HRH~G~DIiliTQ~~ 145 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKR--------------PFTDFEPHLPEGPENFLEAFMR---HRHYNWDIILLTPNI 145 (399)
T ss_pred CEEEEECchhhcCCCccccccccccc--------------cccccccccccCCHHHHHHHHH---hcccCceEEEEeCCH
Confidence 99999999998753211000 00000 0000000000011223333332 233456788999999
Q ss_pred CcccHHHhcCCeeeEE
Q 041423 376 EKLDPALIRRGRMDKH 391 (500)
Q Consensus 376 ~~lD~aLlr~GR~d~~ 391 (500)
..||..++. ++++.
T Consensus 146 ~~Id~~iR~--lvE~~ 159 (399)
T PHA00350 146 RKIHSDIRA--MIEMT 159 (399)
T ss_pred HHhhHHHHH--hhhhe
Confidence 999998875 66653
No 482
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.68 E-value=0.0015 Score=80.28 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||++.|++.+..+-..+.+.+
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G 2000 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG 2000 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 789999999999999999999987766555443
No 483
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.001 Score=67.39 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=50.4
Q ss_pred CCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--CC-hH---HHHHHHHhhc-CCeEEEecchhchhcc
Q 041423 240 GKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--KD-NT---ELRKLLIETT-SKSIIVIEDIDCSLDL 310 (500)
Q Consensus 240 g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~~-~~---~l~~l~~~~~-~~~Il~iDdiD~~~~~ 310 (500)
.+....| +.|.||+|||||||.+.||+....+-..|.+.+- .+ +. ++--+|.... -|..-|.|+|-.-+.+
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 3344455 7899999999999999999998887665554432 11 10 1111121111 2555677777766655
Q ss_pred cCcchhhhcccchHH
Q 041423 311 TGQRKKKAEKSSDDE 325 (500)
Q Consensus 311 ~g~~~~~~~~~~~~~ 325 (500)
.+..+.....++.+.
T Consensus 103 ~~~~k~ei~~rV~ev 117 (338)
T COG3839 103 RGVPKAEIDKRVKEV 117 (338)
T ss_pred CCCchHHHHHHHHHH
Confidence 555444444444433
No 484
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.026 Score=58.92 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=27.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeeccc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTAV 280 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~~ 280 (500)
.-++|.||+|+||||++..+|..+ |..+..+++...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 348899999999999999999754 445655555443
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.66 E-value=0.0019 Score=48.64 Aligned_cols=24 Identities=42% Similarity=0.702 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
..+|+||+|+||||++-|+.-.|-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999987663
No 486
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.66 E-value=0.0017 Score=60.93 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-++++||+|||||.++-++|+.+|.+++.+|--.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEeccee
Confidence 4789999999999999999999999998876433
No 487
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.00041 Score=66.25 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=32.9
Q ss_pred HhhCCCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 237 ARIGKAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 237 ~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+++.+...+| +-|.||+|||||||++++|+........+.+..
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 3344444444 789999999999999999999888776666554
No 488
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.63 E-value=0.0016 Score=65.38 Aligned_cols=28 Identities=32% Similarity=0.240 Sum_probs=23.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh-CCCEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL-NYDVY 273 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l-~~~i~ 273 (500)
-++|.|||||||||+++.++..+ +..++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 47889999999999999999998 54443
No 489
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.63 E-value=0.014 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+-++|.||+|+||++++..|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999986
No 490
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.62 E-value=0.0021 Score=62.89 Aligned_cols=31 Identities=45% Similarity=0.572 Sum_probs=25.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
++|.|+||+||||+++.+|..+ +.++..++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 5799999999999999999988 455655543
No 491
>PRK09354 recA recombinase A; Provisional
Probab=96.62 E-value=0.011 Score=60.24 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH---hCCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL---LNYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~l~ 278 (500)
|+|..+-+++|||||||||+|+-.++.. .+.....++..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 5666666899999999999999866543 24445544433
No 492
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.62 E-value=0.0034 Score=69.59 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-+.|.||+|+|||||.++|++....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3889999999999999999998754
No 493
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.61 E-value=0.0048 Score=60.70 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELRKLLI 291 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~~l~~ 291 (500)
|+|.++.+|++|+||||||+++..++... |.+++.++... +...+.+.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 56777779999999999999998777643 66788777664 4555655553
No 494
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.60 E-value=0.0028 Score=63.65 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=23.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
++++++.||+|+||||+++++++++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 45899999999999999999999873
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.59 E-value=0.0032 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.+.||+|+||||+++++++.++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 47899999999999999999999874
No 496
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.58 E-value=0.0018 Score=59.80 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=22.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-++|.||||+||||++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998764
No 497
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.58 E-value=0.007 Score=63.85 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc
Q 041423 218 KKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV 280 (500)
Q Consensus 218 ~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~ 280 (500)
..+.+.+.+...+.......... ..|..++|+||||+||||++..+|..+ +..+..+++...
T Consensus 70 ~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 70 VIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 34445555555444321111111 235578999999999999999999877 456666665543
No 498
>PLN02674 adenylate kinase
Probab=96.57 E-value=0.0021 Score=62.46 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=26.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
...++|.||||+||||+++.||..++...+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3468999999999999999999999876543
No 499
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.003 Score=56.14 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=35.2
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHH
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
+.+-.+++.|++||||||++++++.+|+.++++ ..++...++..++-
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~ 56 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMT 56 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHh
Confidence 344457888999999999999999999999875 33444555555443
No 500
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0028 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-++|.|+||+||||+++++++.+..
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999998863
Done!