Query 041423
Match_columns 500
No_of_seqs 406 out of 3279
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.4E-40 8.1E-45 338.8 19.8 241 204-479 142-390 (405)
2 4b4t_I 26S protease regulatory 100.0 2.8E-40 9.5E-45 339.0 19.2 244 204-482 176-427 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.4E-39 4.8E-44 338.0 18.6 245 204-483 175-427 (437)
4 4b4t_M 26S protease regulatory 100.0 8.4E-40 2.9E-44 339.4 16.6 244 202-480 173-424 (434)
5 4b4t_K 26S protease regulatory 100.0 3.4E-39 1.2E-43 334.7 20.2 240 204-478 166-414 (428)
6 4b4t_H 26S protease regulatory 100.0 1.2E-38 4.2E-43 329.9 20.1 243 203-480 202-452 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1.7E-33 5.8E-38 311.4 9.7 226 204-464 471-704 (806)
8 3cf2_A TER ATPase, transitiona 100.0 1.1E-31 3.9E-36 296.8 17.7 221 205-463 199-427 (806)
9 2x8a_A Nuclear valosin-contain 100.0 3.6E-28 1.2E-32 239.7 20.6 207 205-438 5-225 (274)
10 3cf0_A Transitional endoplasmi 100.0 1E-27 3.5E-32 239.7 21.6 186 204-413 9-202 (301)
11 2ce7_A Cell division protein F 99.9 4.3E-27 1.5E-31 247.7 20.1 210 205-439 11-229 (476)
12 3h4m_A Proteasome-activating n 99.9 1.9E-26 6.4E-31 228.0 21.1 241 202-478 9-258 (285)
13 1xwi_A SKD1 protein; VPS4B, AA 99.9 6.2E-26 2.1E-30 228.9 22.7 206 204-438 6-222 (322)
14 1lv7_A FTSH; alpha/beta domain 99.9 4.3E-26 1.5E-30 222.4 18.8 185 203-412 5-197 (257)
15 2qz4_A Paraplegin; AAA+, SPG7, 99.9 8.7E-27 3E-31 227.1 13.6 210 206-439 2-222 (262)
16 3eie_A Vacuolar protein sortin 99.9 1E-25 3.5E-30 227.3 20.4 209 201-438 9-227 (322)
17 2qp9_X Vacuolar protein sortin 99.9 3.7E-25 1.3E-29 226.2 19.9 206 204-438 45-260 (355)
18 3hu3_A Transitional endoplasmi 99.9 5.6E-25 1.9E-29 233.2 19.2 207 205-438 199-414 (489)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 4.4E-25 1.5E-29 233.7 15.4 209 205-438 26-243 (499)
20 1ixz_A ATP-dependent metallopr 99.9 1.9E-24 6.5E-29 210.3 17.5 184 203-411 9-200 (254)
21 2zan_A Vacuolar protein sortin 99.9 2.2E-24 7.5E-29 226.8 17.8 206 204-438 128-344 (444)
22 2r62_A Cell division protease 99.9 3.7E-25 1.3E-29 216.8 6.3 185 205-412 6-198 (268)
23 3t15_A Ribulose bisphosphate c 99.9 4.3E-24 1.5E-28 212.6 13.9 150 238-412 30-200 (293)
24 3vfd_A Spastin; ATPase, microt 99.9 2.8E-23 9.7E-28 214.8 20.4 210 202-439 107-326 (389)
25 1iy2_A ATP-dependent metallopr 99.9 2.2E-23 7.4E-28 205.8 17.8 185 203-412 33-225 (278)
26 3d8b_A Fidgetin-like protein 1 99.9 3.4E-23 1.2E-27 211.8 19.1 207 205-439 79-295 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.9 8E-23 2.7E-27 203.2 20.5 207 204-438 15-232 (297)
28 1ypw_A Transitional endoplasmi 99.9 2.2E-25 7.6E-30 250.0 -5.3 223 205-462 472-702 (806)
29 1ypw_A Transitional endoplasmi 99.9 1.9E-21 6.4E-26 218.2 15.7 181 205-412 199-387 (806)
30 3pfi_A Holliday junction ATP-d 99.8 2E-17 7E-22 167.1 21.9 164 203-412 22-199 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 5.4E-19 1.8E-23 186.4 7.8 182 204-399 31-226 (456)
32 3syl_A Protein CBBX; photosynt 99.8 4.8E-17 1.6E-21 162.1 21.5 168 211-413 32-220 (309)
33 1g41_A Heat shock protein HSLU 99.7 1E-18 3.6E-23 181.5 5.5 162 211-406 16-188 (444)
34 1hqc_A RUVB; extended AAA-ATPa 99.7 1.7E-16 5.8E-21 159.1 17.8 188 205-438 7-210 (324)
35 3u61_B DNA polymerase accessor 99.7 3.6E-16 1.2E-20 157.0 15.9 157 197-410 15-178 (324)
36 1ofh_A ATP-dependent HSL prote 99.7 2.2E-16 7.4E-21 157.0 14.0 174 211-410 16-215 (310)
37 2chg_A Replication factor C sm 99.7 3.6E-15 1.2E-19 139.8 19.3 153 203-411 10-175 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 6.3E-16 2.2E-20 151.5 14.4 167 210-408 33-210 (272)
39 3hws_A ATP-dependent CLP prote 99.6 9E-16 3.1E-20 156.9 14.4 175 212-410 17-269 (363)
40 3m6a_A ATP-dependent protease 99.6 1.8E-15 6.2E-20 162.7 16.6 159 209-410 80-266 (543)
41 4fcw_A Chaperone protein CLPB; 99.6 1.4E-14 4.7E-19 144.3 19.5 161 210-412 17-231 (311)
42 1jbk_A CLPB protein; beta barr 99.6 7.4E-16 2.5E-20 141.1 8.7 152 205-406 17-194 (195)
43 1njg_A DNA polymerase III subu 99.6 3.8E-14 1.3E-18 134.4 19.9 155 203-412 16-200 (250)
44 3uk6_A RUVB-like 2; hexameric 99.6 1.6E-14 5.5E-19 147.3 17.4 158 204-412 38-274 (368)
45 2r44_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 146.0 15.9 152 208-412 25-200 (331)
46 1sxj_A Activator 1 95 kDa subu 99.6 1.9E-14 6.4E-19 154.0 16.8 171 196-411 27-223 (516)
47 3pvs_A Replication-associated 99.6 2E-14 6.8E-19 150.7 16.6 151 203-412 19-180 (447)
48 1um8_A ATP-dependent CLP prote 99.6 1.2E-13 4E-18 141.8 19.6 175 211-409 22-285 (376)
49 2p65_A Hypothetical protein PF 99.5 1.6E-14 5.4E-19 131.9 10.9 145 205-398 17-187 (187)
50 3bos_A Putative DNA replicatio 99.5 5.4E-14 1.8E-18 133.9 14.6 160 202-411 20-188 (242)
51 1sxj_D Activator 1 41 kDa subu 99.5 6.7E-14 2.3E-18 141.6 16.0 153 203-411 30-206 (353)
52 1iqp_A RFCS; clamp loader, ext 99.5 1E-13 3.5E-18 138.5 17.0 153 203-411 18-183 (327)
53 1sxj_B Activator 1 37 kDa subu 99.5 1.5E-13 5.3E-18 137.0 16.9 153 203-411 14-180 (323)
54 1l8q_A Chromosomal replication 99.5 1.5E-13 5.1E-18 138.0 16.7 161 203-411 4-180 (324)
55 2v1u_A Cell division control p 99.5 1.7E-13 5.8E-18 139.9 17.0 162 205-411 14-215 (387)
56 2chq_A Replication factor C sm 99.5 6.8E-14 2.3E-18 139.3 13.6 153 203-411 10-175 (319)
57 1jr3_A DNA polymerase III subu 99.5 4.2E-13 1.4E-17 136.7 19.7 154 203-411 9-192 (373)
58 3te6_A Regulatory protein SIR3 99.5 4.1E-13 1.4E-17 134.0 18.6 129 243-412 44-213 (318)
59 1in4_A RUVB, holliday junction 99.5 9.5E-13 3.2E-17 133.0 21.4 175 203-411 18-194 (334)
60 1g8p_A Magnesium-chelatase 38 99.5 4.1E-13 1.4E-17 135.7 17.8 155 203-410 17-232 (350)
61 2qby_B CDC6 homolog 3, cell di 99.5 2.8E-13 9.7E-18 138.6 15.5 152 210-411 20-211 (384)
62 2qby_A CDC6 homolog 1, cell di 99.5 2.6E-13 8.8E-18 138.4 15.0 163 203-411 13-211 (386)
63 3pxi_A Negative regulator of g 99.5 9.4E-13 3.2E-17 147.2 20.4 159 210-411 491-676 (758)
64 1r6b_X CLPA protein; AAA+, N-t 99.5 5.3E-13 1.8E-17 149.3 17.9 155 210-411 458-667 (758)
65 3pxg_A Negative regulator of g 99.5 5.4E-13 1.9E-17 140.9 16.9 147 204-412 174-340 (468)
66 2bjv_A PSP operon transcriptio 99.5 4.4E-13 1.5E-17 130.6 14.4 155 207-410 3-194 (265)
67 2z4s_A Chromosomal replication 99.5 7.4E-13 2.5E-17 138.7 17.0 160 202-411 97-277 (440)
68 1fnn_A CDC6P, cell division co 99.5 2E-12 6.7E-17 132.3 19.6 159 208-411 15-207 (389)
69 1sxj_E Activator 1 40 kDa subu 99.4 1.7E-12 5.7E-17 131.6 17.0 155 203-412 7-208 (354)
70 1qvr_A CLPB protein; coiled co 99.4 1.7E-12 5.9E-17 146.8 18.2 157 205-411 165-346 (854)
71 1sxj_C Activator 1 40 kDa subu 99.4 3.3E-12 1.1E-16 129.1 18.1 152 203-410 18-182 (340)
72 1r6b_X CLPA protein; AAA+, N-t 99.4 7.8E-13 2.7E-17 147.9 13.8 158 205-411 181-363 (758)
73 3pxi_A Negative regulator of g 99.4 4.4E-12 1.5E-16 141.8 17.2 147 204-412 174-340 (758)
74 3n70_A Transport activator; si 99.4 1.7E-12 5.8E-17 114.9 10.9 84 211-307 2-88 (145)
75 1a5t_A Delta prime, HOLB; zinc 99.4 2.6E-11 8.8E-16 122.4 20.6 125 243-410 23-180 (334)
76 4akg_A Glutathione S-transfera 99.4 4.4E-12 1.5E-16 155.5 17.6 160 208-411 1242-1432(2695)
77 1qvr_A CLPB protein; coiled co 99.3 1.2E-11 3.9E-16 140.1 16.2 160 209-411 557-771 (854)
78 3co5_A Putative two-component 99.3 2.7E-12 9.2E-17 113.4 7.2 132 211-397 5-142 (143)
79 1ojl_A Transcriptional regulat 99.3 1.5E-11 5E-16 122.6 12.6 152 211-411 3-191 (304)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 2.1E-11 7.1E-16 129.2 13.8 146 211-411 23-197 (500)
81 3ec2_A DNA replication protein 99.3 9E-12 3.1E-16 114.0 9.1 93 206-306 6-111 (180)
82 2gno_A DNA polymerase III, gam 99.3 4.6E-11 1.6E-15 118.9 14.1 121 245-410 19-152 (305)
83 3f9v_A Minichromosome maintena 99.2 7.2E-12 2.5E-16 135.9 2.6 128 246-412 329-492 (595)
84 1svm_A Large T antigen; AAA+ f 99.1 1.8E-11 6.1E-16 125.1 4.3 121 239-396 164-284 (377)
85 1w5s_A Origin recognition comp 99.1 2.2E-09 7.5E-14 110.5 18.3 164 208-411 20-229 (412)
86 2w58_A DNAI, primosome compone 99.0 3.2E-10 1.1E-14 105.4 8.5 96 205-306 20-126 (202)
87 1tue_A Replication protein E1; 99.0 6.8E-10 2.3E-14 103.0 8.1 70 223-306 45-114 (212)
88 3vkg_A Dynein heavy chain, cyt 98.9 7.2E-09 2.5E-13 128.1 17.2 161 207-411 1278-1470(3245)
89 2qgz_A Helicase loader, putati 98.9 1.4E-09 4.9E-14 108.4 7.5 95 206-306 120-225 (308)
90 3k1j_A LON protease, ATP-depen 98.9 6.6E-09 2.2E-13 113.1 11.6 53 204-271 35-87 (604)
91 3cmw_A Protein RECA, recombina 98.8 8.8E-09 3E-13 121.7 10.8 147 207-375 1017-1218(1706)
92 2kjq_A DNAA-related protein; s 98.8 1.8E-08 6E-13 89.4 9.5 57 244-307 36-95 (149)
93 4akg_A Glutathione S-transfera 98.8 1.1E-07 3.7E-12 117.1 19.3 125 244-407 645-790 (2695)
94 2r2a_A Uncharacterized protein 98.8 1.8E-08 6E-13 93.9 9.3 118 246-399 7-155 (199)
95 2vhj_A Ntpase P4, P4; non- hyd 98.7 7.7E-09 2.6E-13 102.5 6.1 115 240-381 119-241 (331)
96 1u0j_A DNA replication protein 98.7 8.3E-08 2.8E-12 92.8 13.0 58 242-306 102-159 (267)
97 2fna_A Conserved hypothetical 98.7 1.6E-07 5.4E-12 94.2 15.4 55 208-279 11-65 (357)
98 2qen_A Walker-type ATPase; unk 98.5 3.6E-06 1.2E-10 84.0 18.9 56 206-278 8-63 (350)
99 1ny5_A Transcriptional regulat 98.5 2.1E-06 7.3E-11 88.0 15.2 153 210-411 137-326 (387)
100 1ye8_A Protein THEP1, hypothet 98.4 1.7E-06 5.8E-11 78.9 11.5 28 246-273 2-29 (178)
101 3vkg_A Dynein heavy chain, cyt 98.4 7.3E-06 2.5E-10 101.9 19.7 141 245-424 605-768 (3245)
102 3dzd_A Transcriptional regulat 98.4 5.3E-06 1.8E-10 84.5 15.3 152 211-411 130-317 (368)
103 3f8t_A Predicted ATPase involv 98.2 1.4E-06 4.6E-11 90.4 7.6 139 212-401 215-385 (506)
104 3cmu_A Protein RECA, recombina 98.2 3.1E-06 1.1E-10 101.4 9.4 113 240-375 1423-1563(2050)
105 1jr3_D DNA polymerase III, del 98.0 4.9E-05 1.7E-09 76.3 13.6 123 243-411 17-156 (343)
106 2cvh_A DNA repair and recombin 97.8 0.00014 4.8E-09 67.5 12.4 40 240-279 16-55 (220)
107 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.0002 7E-09 66.7 12.1 38 240-277 19-59 (235)
108 1z6t_A APAF-1, apoptotic prote 97.7 0.00051 1.7E-08 73.9 15.6 63 206-279 120-189 (591)
109 3gfo_A Cobalt import ATP-bindi 97.7 1.6E-05 5.6E-10 77.5 3.2 34 247-280 37-70 (275)
110 1n0w_A DNA repair protein RAD5 97.7 0.00013 4.5E-09 68.8 9.3 28 240-267 20-47 (243)
111 2ehv_A Hypothetical protein PH 97.6 0.00013 4.5E-09 69.1 8.7 27 240-266 26-52 (251)
112 3vaa_A Shikimate kinase, SK; s 97.6 3.3E-05 1.1E-09 71.2 3.5 31 244-274 25-55 (199)
113 3trf_A Shikimate kinase, SK; a 97.5 3.6E-05 1.2E-09 69.8 3.3 32 244-275 5-36 (185)
114 1qhx_A CPT, protein (chloramph 97.5 6.2E-05 2.1E-09 67.7 4.8 34 245-278 4-37 (178)
115 3hr8_A Protein RECA; alpha and 97.5 0.00027 9.3E-09 71.3 10.0 40 240-279 57-99 (356)
116 2olj_A Amino acid ABC transpor 97.5 4.2E-05 1.5E-09 74.0 3.8 34 246-279 52-85 (263)
117 3kb2_A SPBC2 prophage-derived 97.5 8.1E-05 2.8E-09 66.3 5.2 31 246-276 3-33 (173)
118 3tui_C Methionine import ATP-b 97.5 6.5E-05 2.2E-09 75.9 5.0 34 246-279 56-89 (366)
119 1nlf_A Regulatory protein REPA 97.5 0.00051 1.7E-08 66.7 11.0 29 240-268 26-54 (279)
120 2z43_A DNA repair and recombin 97.5 0.00017 5.8E-09 71.9 7.7 40 240-279 103-151 (324)
121 2rhm_A Putative kinase; P-loop 97.5 6.8E-05 2.3E-09 68.2 4.4 34 241-274 2-35 (193)
122 2zr9_A Protein RECA, recombina 97.4 0.00044 1.5E-08 69.7 10.1 69 240-308 57-152 (349)
123 1g6h_A High-affinity branched- 97.4 7.9E-05 2.7E-09 71.9 4.4 33 247-279 36-68 (257)
124 1kag_A SKI, shikimate kinase I 97.4 9E-05 3.1E-09 66.2 4.3 30 245-274 5-34 (173)
125 2orw_A Thymidine kinase; TMTK, 97.4 0.00015 5.3E-09 66.1 5.7 30 246-275 5-37 (184)
126 3rlf_A Maltose/maltodextrin im 97.4 2.4E-05 8.2E-10 79.6 0.0 33 247-279 32-64 (381)
127 1v5w_A DMC1, meiotic recombina 97.4 0.00042 1.4E-08 69.6 9.2 40 240-279 118-166 (343)
128 1pzn_A RAD51, DNA repair and r 97.4 0.0004 1.4E-08 70.0 8.7 29 240-268 127-155 (349)
129 1vpl_A ABC transporter, ATP-bi 97.4 7.2E-05 2.5E-09 72.1 3.0 34 246-279 43-76 (256)
130 3sfz_A APAF-1, apoptotic pepti 97.4 0.0014 4.8E-08 76.3 14.5 65 204-279 118-189 (1249)
131 3fvq_A Fe(3+) IONS import ATP- 97.4 2E-05 6.9E-10 79.6 -1.0 33 247-279 33-65 (359)
132 1via_A Shikimate kinase; struc 97.3 0.00012 4.1E-09 65.8 4.1 29 246-274 6-34 (175)
133 1u94_A RECA protein, recombina 97.3 0.00075 2.6E-08 68.1 10.3 69 240-308 59-154 (356)
134 1b0u_A Histidine permease; ABC 97.3 8.7E-05 3E-09 71.8 3.2 34 246-279 34-67 (262)
135 3iij_A Coilin-interacting nucl 97.3 0.0001 3.5E-09 66.5 3.5 31 244-274 11-41 (180)
136 1xp8_A RECA protein, recombina 97.3 0.00083 2.9E-08 68.0 10.4 69 240-308 70-165 (366)
137 2iyv_A Shikimate kinase, SK; t 97.3 0.00011 3.8E-09 66.4 3.4 29 246-274 4-32 (184)
138 2ze6_A Isopentenyl transferase 97.3 0.00014 4.7E-09 69.9 3.9 32 246-277 3-34 (253)
139 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.8E-09 66.8 3.0 30 245-274 11-41 (184)
140 2pcj_A ABC transporter, lipopr 97.3 0.00011 3.7E-09 69.4 3.0 34 246-279 32-65 (224)
141 2yyz_A Sugar ABC transporter, 97.3 5.2E-05 1.8E-09 76.7 0.8 33 247-279 32-64 (359)
142 1zuh_A Shikimate kinase; alpha 97.3 0.00019 6.4E-09 64.0 4.4 29 246-274 9-37 (168)
143 1v43_A Sugar-binding transport 97.2 5.9E-05 2E-09 76.7 1.0 34 246-279 39-72 (372)
144 1gvn_B Zeta; postsegregational 97.2 0.00033 1.1E-08 68.6 6.3 34 244-277 33-66 (287)
145 1zp6_A Hypothetical protein AT 97.2 0.00015 5E-09 66.0 3.3 34 243-276 8-41 (191)
146 1z47_A CYSA, putative ABC-tran 97.2 4.1E-05 1.4E-09 77.3 -0.5 34 246-279 43-76 (355)
147 2it1_A 362AA long hypothetical 97.2 5.2E-05 1.8E-09 76.7 -0.2 33 247-279 32-64 (362)
148 1e6c_A Shikimate kinase; phosp 97.2 0.00023 7.9E-09 63.5 4.1 29 246-274 4-32 (173)
149 3cmu_A Protein RECA, recombina 97.2 0.00079 2.7E-08 81.0 9.4 69 240-308 1077-1172(2050)
150 3lda_A DNA repair protein RAD5 97.2 0.0015 5E-08 67.0 10.3 28 240-267 174-201 (400)
151 3t61_A Gluconokinase; PSI-biol 97.2 0.00029 1E-08 64.8 4.6 30 245-274 19-48 (202)
152 3lw7_A Adenylate kinase relate 97.2 0.00024 8.3E-09 63.0 3.9 28 246-274 3-30 (179)
153 2cdn_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 64.5 4.7 30 246-275 22-51 (201)
154 2a5y_B CED-4; apoptosis; HET: 97.1 0.018 6.1E-07 61.4 18.9 44 213-266 131-174 (549)
155 1tev_A UMP-CMP kinase; ploop, 97.1 0.00027 9.3E-09 64.1 4.0 30 245-274 4-33 (196)
156 3cm0_A Adenylate kinase; ATP-b 97.1 0.00026 8.8E-09 64.0 3.8 29 246-274 6-34 (186)
157 1knq_A Gluconate kinase; ALFA/ 97.1 0.00028 9.6E-09 63.2 4.0 29 246-274 10-38 (175)
158 2p5t_B PEZT; postsegregational 97.1 0.00037 1.3E-08 66.8 4.9 35 244-278 32-66 (253)
159 4eun_A Thermoresistant glucoki 97.1 0.00033 1.1E-08 64.5 4.3 29 245-273 30-58 (200)
160 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 62.0 4.4 28 247-274 3-30 (168)
161 1kht_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 64.1 3.5 24 246-269 5-28 (192)
162 1oxx_K GLCV, glucose, ABC tran 97.1 3.7E-05 1.3E-09 77.7 -2.5 33 246-278 33-65 (353)
163 2i1q_A DNA repair and recombin 97.1 0.00073 2.5E-08 67.1 7.0 28 240-267 94-121 (322)
164 3dl0_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 64.9 4.2 29 247-275 3-31 (216)
165 2c95_A Adenylate kinase 1; tra 97.1 0.00034 1.2E-08 63.6 4.1 30 245-274 10-39 (196)
166 2pez_A Bifunctional 3'-phospho 97.1 0.00047 1.6E-08 62.0 4.9 31 246-276 7-40 (179)
167 1ly1_A Polynucleotide kinase; 97.0 0.00024 8.2E-09 63.6 2.8 27 245-271 3-30 (181)
168 3fb4_A Adenylate kinase; psych 97.0 0.00038 1.3E-08 64.6 4.3 29 247-275 3-31 (216)
169 1qf9_A UMP/CMP kinase, protein 97.0 0.00037 1.3E-08 63.0 4.1 30 245-274 7-36 (194)
170 1aky_A Adenylate kinase; ATP:A 97.0 0.00037 1.3E-08 65.0 4.1 29 246-274 6-34 (220)
171 2bwj_A Adenylate kinase 5; pho 97.0 0.00036 1.2E-08 63.6 3.9 30 245-274 13-42 (199)
172 2vli_A Antibiotic resistance p 97.0 0.00028 9.6E-09 63.5 3.0 28 246-273 7-34 (183)
173 1zd8_A GTP:AMP phosphotransfer 97.0 0.00036 1.2E-08 65.5 3.7 30 245-274 8-37 (227)
174 3be4_A Adenylate kinase; malar 97.0 0.00039 1.3E-08 64.9 3.9 29 246-274 7-35 (217)
175 3umf_A Adenylate kinase; rossm 97.0 0.00043 1.5E-08 64.9 3.9 31 243-273 28-58 (217)
176 2pbr_A DTMP kinase, thymidylat 97.0 0.00061 2.1E-08 61.7 4.8 30 247-276 3-35 (195)
177 1vt4_I APAF-1 related killer D 97.0 0.01 3.5E-07 67.3 15.3 56 213-280 131-192 (1221)
178 3io5_A Recombination and repai 97.0 0.0029 1E-07 62.4 9.8 68 240-308 25-124 (333)
179 1ak2_A Adenylate kinase isoenz 96.9 0.00051 1.7E-08 64.8 4.2 29 246-274 18-46 (233)
180 1cke_A CK, MSSA, protein (cyti 96.9 0.00051 1.7E-08 64.1 4.1 29 246-274 7-35 (227)
181 2bbw_A Adenylate kinase 4, AK4 96.9 0.00053 1.8E-08 65.2 4.2 29 245-273 28-56 (246)
182 1g5t_A COB(I)alamin adenosyltr 96.9 0.005 1.7E-07 56.5 10.5 109 246-396 30-179 (196)
183 4a74_A DNA repair and recombin 96.9 0.001 3.6E-08 61.9 6.1 31 240-270 21-51 (231)
184 1ukz_A Uridylate kinase; trans 96.9 0.00052 1.8E-08 63.0 3.9 29 246-274 17-45 (203)
185 3sr0_A Adenylate kinase; phosp 96.9 0.00054 1.8E-08 63.7 4.0 27 247-273 3-29 (206)
186 1e4v_A Adenylate kinase; trans 96.9 0.00056 1.9E-08 63.6 3.9 28 247-274 3-30 (214)
187 3cmw_A Protein RECA, recombina 96.9 0.0021 7.2E-08 76.4 9.6 69 240-308 30-125 (1706)
188 2jaq_A Deoxyguanosine kinase; 96.9 0.00059 2E-08 62.3 3.8 27 247-273 3-29 (205)
189 1zak_A Adenylate kinase; ATP:A 96.9 0.00044 1.5E-08 64.6 3.0 29 245-273 6-34 (222)
190 3crm_A TRNA delta(2)-isopenten 96.9 0.00056 1.9E-08 67.9 3.8 33 245-277 6-38 (323)
191 3c8u_A Fructokinase; YP_612366 96.9 0.0013 4.3E-08 60.9 6.1 34 246-279 24-60 (208)
192 3uie_A Adenylyl-sulfate kinase 96.9 0.00093 3.2E-08 61.4 5.1 25 245-269 26-50 (200)
193 3nwj_A ATSK2; P loop, shikimat 96.9 0.00061 2.1E-08 65.3 3.9 30 245-274 49-78 (250)
194 2xb4_A Adenylate kinase; ATP-b 96.8 0.00066 2.2E-08 63.7 4.1 28 247-274 3-30 (223)
195 3tlx_A Adenylate kinase 2; str 96.8 0.00073 2.5E-08 64.3 4.4 32 244-275 29-60 (243)
196 1jjv_A Dephospho-COA kinase; P 96.8 0.0006 2E-08 62.8 3.6 28 246-274 4-31 (206)
197 2z0h_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 60.9 4.6 31 247-277 3-36 (197)
198 2if2_A Dephospho-COA kinase; a 96.8 0.00063 2.1E-08 62.5 3.5 29 246-275 3-31 (204)
199 1htw_A HI0065; nucleotide-bind 96.8 0.00085 2.9E-08 59.6 4.2 23 246-268 35-57 (158)
200 2v54_A DTMP kinase, thymidylat 96.8 0.00083 2.9E-08 61.5 4.2 32 246-277 6-38 (204)
201 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00055 1.9E-08 68.7 3.2 49 216-273 5-53 (359)
202 2b8t_A Thymidine kinase; deoxy 96.8 0.013 4.3E-07 55.0 12.2 29 247-275 15-46 (223)
203 3thx_B DNA mismatch repair pro 96.8 0.0084 2.9E-07 67.6 12.8 23 244-266 673-695 (918)
204 1nks_A Adenylate kinase; therm 96.7 0.00051 1.7E-08 62.1 2.4 24 246-269 3-26 (194)
205 3r20_A Cytidylate kinase; stru 96.7 0.00098 3.4E-08 63.1 4.2 30 245-274 10-39 (233)
206 3ake_A Cytidylate kinase; CMP 96.7 0.001 3.5E-08 61.0 4.3 30 246-275 4-33 (208)
207 2plr_A DTMP kinase, probable t 96.7 0.0013 4.5E-08 60.3 4.8 26 246-271 6-31 (213)
208 4a82_A Cystic fibrosis transme 96.7 0.0028 9.7E-08 68.2 7.9 50 246-295 369-422 (578)
209 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.7E-08 60.1 3.9 25 246-270 4-28 (189)
210 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0013 4.3E-08 63.3 4.5 31 246-276 6-39 (260)
211 1rz3_A Hypothetical protein rb 96.6 0.0031 1.1E-07 57.9 7.0 34 246-279 24-60 (201)
212 1wb9_A DNA mismatch repair pro 96.6 0.0094 3.2E-07 66.4 12.0 23 245-267 608-630 (800)
213 2grj_A Dephospho-COA kinase; T 96.6 0.00082 2.8E-08 61.7 2.9 30 246-275 14-43 (192)
214 1kgd_A CASK, peripheral plasma 96.6 0.001 3.5E-08 60.1 3.5 25 245-269 6-30 (180)
215 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.5E-08 62.9 4.1 29 246-274 29-57 (252)
216 2qor_A Guanylate kinase; phosp 96.6 0.0013 4.3E-08 60.7 3.7 28 242-269 10-37 (204)
217 1z6g_A Guanylate kinase; struc 96.6 0.0011 3.7E-08 62.1 3.3 24 245-268 24-47 (218)
218 2wwf_A Thymidilate kinase, put 96.6 0.00068 2.3E-08 62.5 1.8 29 245-273 11-39 (212)
219 1lvg_A Guanylate kinase, GMP k 96.5 0.0012 4.2E-08 60.6 3.4 26 244-269 4-29 (198)
220 3tr0_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 60.0 3.6 25 245-269 8-32 (205)
221 3e1s_A Exodeoxyribonuclease V, 96.5 0.0019 6.6E-08 69.4 5.0 34 245-278 205-241 (574)
222 2j41_A Guanylate kinase; GMP, 96.5 0.0012 4.2E-08 60.4 3.1 26 245-270 7-32 (207)
223 2zts_A Putative uncharacterize 96.5 0.015 5.1E-07 54.6 10.7 49 240-290 26-78 (251)
224 3asz_A Uridine kinase; cytidin 96.5 0.0017 5.7E-08 59.9 3.9 32 246-277 8-39 (211)
225 3b9q_A Chloroplast SRP recepto 96.5 0.0019 6.3E-08 63.7 4.4 53 217-269 71-125 (302)
226 4f4c_A Multidrug resistance pr 96.5 0.0055 1.9E-07 72.2 9.1 37 243-279 443-479 (1321)
227 3a00_A Guanylate kinase, GMP k 96.4 0.0014 5E-08 59.4 3.3 25 245-269 2-26 (186)
228 2og2_A Putative signal recogni 96.4 0.0028 9.5E-08 64.0 5.6 53 217-269 128-182 (359)
229 3upu_A ATP-dependent DNA helic 96.4 0.0032 1.1E-07 65.7 6.3 64 202-278 16-83 (459)
230 3tau_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 60.0 3.8 26 245-270 9-34 (208)
231 4b3f_X DNA-binding protein smu 96.4 0.0047 1.6E-07 67.3 7.8 53 212-279 188-243 (646)
232 3kw6_A 26S protease regulatory 96.4 0.0017 5.7E-08 50.3 3.0 74 395-479 1-74 (78)
233 3thx_A DNA mismatch repair pro 96.4 0.017 5.7E-07 65.3 12.3 22 245-266 663-684 (934)
234 2yvu_A Probable adenylyl-sulfa 96.4 0.0031 1.1E-07 56.9 5.1 25 245-269 14-38 (186)
235 3tif_A Uncharacterized ABC tra 96.4 0.0018 6E-08 61.4 3.6 34 246-279 33-66 (235)
236 2onk_A Molybdate/tungstate ABC 96.4 0.0021 7.1E-08 61.2 4.0 35 245-279 25-59 (240)
237 1q3t_A Cytidylate kinase; nucl 96.4 0.0023 8E-08 60.3 4.4 29 246-274 18-46 (236)
238 2v9p_A Replication protein E1; 96.4 0.002 6.7E-08 63.6 3.9 33 240-272 122-154 (305)
239 1znw_A Guanylate kinase, GMP k 96.4 0.0018 6E-08 59.9 3.4 25 245-269 21-45 (207)
240 1vht_A Dephospho-COA kinase; s 96.4 0.0022 7.7E-08 59.5 4.1 29 246-275 6-34 (218)
241 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.6E-08 58.8 3.6 29 246-275 10-38 (203)
242 1nn5_A Similar to deoxythymidy 96.4 0.001 3.5E-08 61.4 1.7 26 245-270 10-35 (215)
243 1uj2_A Uridine-cytidine kinase 96.3 0.0026 8.8E-08 60.7 4.5 27 245-271 23-49 (252)
244 1z0j_A RAB-22, RAS-related pro 96.3 0.0091 3.1E-07 52.1 7.8 23 246-268 8-30 (170)
245 2px0_A Flagellar biosynthesis 96.3 0.013 4.3E-07 57.5 9.4 36 244-279 105-144 (296)
246 2h92_A Cytidylate kinase; ross 96.3 0.0027 9.1E-08 58.9 4.3 30 246-275 5-34 (219)
247 2dr3_A UPF0273 protein PH0284; 96.3 0.0029 1E-07 59.4 4.5 40 240-279 19-61 (247)
248 2jeo_A Uridine-cytidine kinase 96.3 0.0022 7.6E-08 60.9 3.6 25 247-271 28-52 (245)
249 1sgw_A Putative ABC transporte 96.3 0.0022 7.4E-08 60.0 3.3 34 246-279 37-70 (214)
250 1m7g_A Adenylylsulfate kinase; 96.2 0.0029 1E-07 58.5 4.2 32 245-276 26-61 (211)
251 2ius_A DNA translocase FTSK; n 96.2 0.04 1.4E-06 58.0 13.3 41 365-407 332-374 (512)
252 1ewq_A DNA mismatch repair pro 96.2 0.0076 2.6E-07 66.8 8.1 25 244-268 576-600 (765)
253 2qt1_A Nicotinamide riboside k 96.2 0.0018 6E-08 59.7 2.5 27 246-272 23-50 (207)
254 1ek0_A Protein (GTP-binding pr 96.2 0.012 4E-07 51.3 7.8 22 246-267 5-26 (170)
255 2iut_A DNA translocase FTSK; n 96.2 0.057 1.9E-06 57.5 14.2 43 363-407 376-420 (574)
256 3a8t_A Adenylate isopentenyltr 96.2 0.0016 5.5E-08 64.9 2.1 33 246-278 42-74 (339)
257 1s96_A Guanylate kinase, GMP k 96.2 0.0026 9E-08 59.6 3.4 29 242-270 14-42 (219)
258 2eyu_A Twitching motility prot 96.2 0.0032 1.1E-07 60.7 4.1 27 244-270 25-51 (261)
259 1kao_A RAP2A; GTP-binding prot 96.1 0.031 1.1E-06 48.2 10.3 22 246-267 5-26 (167)
260 2qi9_C Vitamin B12 import ATP- 96.1 0.0021 7.2E-08 61.5 2.7 32 247-279 29-60 (249)
261 2yhs_A FTSY, cell division pro 96.1 0.003 1E-07 66.1 4.1 24 246-269 295-318 (503)
262 2pze_A Cystic fibrosis transme 96.1 0.0026 8.9E-08 60.0 3.3 32 246-277 36-67 (229)
263 2r8r_A Sensor protein; KDPD, P 96.1 0.0099 3.4E-07 55.8 7.1 34 246-279 8-44 (228)
264 4gp7_A Metallophosphoesterase; 96.1 0.0032 1.1E-07 56.3 3.6 18 246-263 11-28 (171)
265 3zvl_A Bifunctional polynucleo 96.1 0.0046 1.6E-07 63.7 5.2 57 245-303 259-316 (416)
266 3ice_A Transcription terminati 96.1 0.011 3.8E-07 59.8 7.8 22 247-268 177-198 (422)
267 1ji0_A ABC transporter; ATP bi 96.1 0.0027 9.3E-08 60.3 3.2 33 247-279 35-67 (240)
268 1r2q_A RAS-related protein RAB 96.1 0.016 5.6E-07 50.3 8.1 21 246-266 8-28 (170)
269 2ixe_A Antigen peptide transpo 96.1 0.0031 1.1E-07 61.1 3.6 34 246-279 47-80 (271)
270 2cbz_A Multidrug resistance-as 96.1 0.0021 7.3E-08 60.9 2.3 31 246-276 33-63 (237)
271 3bh0_A DNAB-like replicative h 96.1 0.032 1.1E-06 55.1 10.9 39 240-278 64-105 (315)
272 3foz_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 62.1 3.4 33 244-276 10-42 (316)
273 3d3q_A TRNA delta(2)-isopenten 96.0 0.0027 9.3E-08 63.4 3.1 32 245-276 8-39 (340)
274 2i3b_A HCR-ntpase, human cance 96.0 0.0032 1.1E-07 57.6 3.3 23 246-268 3-25 (189)
275 1ex7_A Guanylate kinase; subst 96.0 0.0046 1.6E-07 56.4 4.4 28 245-272 2-29 (186)
276 2ff7_A Alpha-hemolysin translo 96.0 0.0029 1E-07 60.4 3.2 34 246-279 37-70 (247)
277 3tqc_A Pantothenate kinase; bi 96.0 0.0052 1.8E-07 61.0 5.0 35 246-280 94-133 (321)
278 1vma_A Cell division protein F 96.0 0.007 2.4E-07 59.7 5.9 60 218-278 79-141 (306)
279 2krk_A 26S protease regulatory 96.0 0.0022 7.4E-08 50.8 1.8 76 393-479 7-82 (86)
280 4f4c_A Multidrug resistance pr 96.0 0.006 2E-07 71.9 6.3 57 243-299 1104-1164(1321)
281 2oil_A CATX-8, RAS-related pro 96.0 0.016 5.3E-07 52.1 7.8 22 246-267 27-48 (193)
282 2qmh_A HPR kinase/phosphorylas 96.0 0.002 6.9E-08 59.2 1.8 30 244-274 34-63 (205)
283 2ihy_A ABC transporter, ATP-bi 96.0 0.0031 1.1E-07 61.3 3.2 33 247-279 50-82 (279)
284 1ltq_A Polynucleotide kinase; 96.0 0.003 1E-07 61.6 3.2 29 245-273 3-32 (301)
285 2obl_A ESCN; ATPase, hydrolase 96.0 0.0062 2.1E-07 61.2 5.5 37 241-277 66-104 (347)
286 2yz2_A Putative ABC transporte 96.0 0.0036 1.2E-07 60.4 3.6 34 246-279 35-68 (266)
287 2ce2_X GTPase HRAS; signaling 96.0 0.019 6.4E-07 49.5 8.0 22 246-267 5-26 (166)
288 3t1o_A Gliding protein MGLA; G 96.0 0.017 5.9E-07 51.7 7.9 23 246-268 16-38 (198)
289 1g41_A Heat shock protein HSLU 96.0 0.027 9.2E-07 58.3 10.2 94 288-407 243-346 (444)
290 1cr0_A DNA primase/helicase; R 96.0 0.0034 1.2E-07 61.2 3.4 39 240-278 31-73 (296)
291 3fdi_A Uncharacterized protein 96.0 0.0038 1.3E-07 57.6 3.4 29 246-274 8-36 (201)
292 3lnc_A Guanylate kinase, GMP k 95.9 0.0023 7.7E-08 60.1 1.8 24 246-269 29-53 (231)
293 3kl4_A SRP54, signal recogniti 95.9 0.0069 2.4E-07 62.5 5.5 36 244-279 97-135 (433)
294 1g29_1 MALK, maltose transport 95.9 0.0045 1.6E-07 62.7 4.0 33 246-278 31-63 (372)
295 3e70_C DPA, signal recognition 95.9 0.009 3.1E-07 59.5 6.1 26 244-269 129-154 (328)
296 2f6r_A COA synthase, bifunctio 95.9 0.0041 1.4E-07 60.5 3.5 28 246-274 77-104 (281)
297 2o8b_B DNA mismatch repair pro 95.9 0.025 8.6E-07 64.6 10.5 20 245-264 790-809 (1022)
298 3ney_A 55 kDa erythrocyte memb 95.9 0.0048 1.6E-07 56.8 3.8 25 245-269 20-44 (197)
299 2dpy_A FLII, flagellum-specifi 95.9 0.008 2.7E-07 62.3 5.8 38 241-278 152-191 (438)
300 1z0f_A RAB14, member RAS oncog 95.9 0.024 8.2E-07 49.8 8.3 23 245-267 16-38 (179)
301 1sky_E F1-ATPase, F1-ATP synth 95.9 0.055 1.9E-06 56.2 12.1 23 246-268 153-175 (473)
302 1p9r_A General secretion pathw 95.9 0.0094 3.2E-07 61.4 6.2 25 247-271 170-194 (418)
303 3d31_A Sulfate/molybdate ABC t 95.9 0.004 1.4E-07 62.5 3.3 34 246-279 28-61 (348)
304 3nh6_A ATP-binding cassette SU 95.8 0.0024 8.2E-08 63.0 1.6 52 245-296 81-136 (306)
305 2efe_B Small GTP-binding prote 95.8 0.02 6.7E-07 50.6 7.6 22 246-267 14-35 (181)
306 3tkl_A RAS-related protein RAB 95.8 0.017 5.9E-07 51.8 7.2 22 246-267 18-39 (196)
307 4g1u_C Hemin import ATP-bindin 95.8 0.0028 9.5E-08 61.3 1.9 34 246-279 39-72 (266)
308 3gmt_A Adenylate kinase; ssgci 95.8 0.0053 1.8E-07 57.8 3.8 28 247-274 11-38 (230)
309 1w4r_A Thymidine kinase; type 95.8 0.014 4.7E-07 53.5 6.3 31 246-276 22-55 (195)
310 2ewv_A Twitching motility prot 95.8 0.0055 1.9E-07 62.1 4.1 28 242-269 134-161 (372)
311 1mv5_A LMRA, multidrug resista 95.8 0.0027 9.4E-08 60.4 1.7 30 246-275 30-59 (243)
312 3exa_A TRNA delta(2)-isopenten 95.8 0.004 1.4E-07 61.4 2.8 31 246-276 5-35 (322)
313 2nq2_C Hypothetical ABC transp 95.7 0.0041 1.4E-07 59.6 2.7 30 246-275 33-62 (253)
314 3kta_A Chromosome segregation 95.7 0.0052 1.8E-07 55.1 3.3 24 247-270 29-52 (182)
315 2pjz_A Hypothetical protein ST 95.7 0.0051 1.7E-07 59.3 3.4 32 246-278 32-63 (263)
316 3bc1_A RAS-related protein RAB 95.7 0.023 8E-07 50.5 7.6 22 245-266 12-33 (195)
317 2oap_1 GSPE-2, type II secreti 95.7 0.0046 1.6E-07 65.4 3.2 28 244-271 260-287 (511)
318 3jvv_A Twitching mobility prot 95.7 0.005 1.7E-07 62.1 3.3 24 246-269 125-148 (356)
319 1gtv_A TMK, thymidylate kinase 95.7 0.0026 9E-08 58.5 1.2 24 247-270 3-26 (214)
320 1odf_A YGR205W, hypothetical 3 95.7 0.0067 2.3E-07 59.3 4.1 26 245-270 32-57 (290)
321 3dm5_A SRP54, signal recogniti 95.7 0.0093 3.2E-07 61.7 5.4 62 217-279 74-138 (443)
322 1nrj_B SR-beta, signal recogni 95.7 0.011 3.7E-07 54.4 5.3 24 245-268 13-36 (218)
323 4eaq_A DTMP kinase, thymidylat 95.7 0.0069 2.4E-07 57.0 3.9 29 246-274 28-58 (229)
324 3dz8_A RAS-related protein RAB 95.6 0.022 7.4E-07 51.2 7.0 23 246-268 25-47 (191)
325 1zu4_A FTSY; GTPase, signal re 95.6 0.011 3.9E-07 58.5 5.3 36 244-279 105-143 (320)
326 1rj9_A FTSY, signal recognitio 95.6 0.0063 2.1E-07 60.0 3.4 26 245-270 103-128 (304)
327 3b85_A Phosphate starvation-in 95.5 0.0045 1.5E-07 57.5 2.2 22 246-267 24-45 (208)
328 2ghi_A Transport protein; mult 95.5 0.0069 2.4E-07 58.2 3.4 33 246-279 48-80 (260)
329 2fg5_A RAB-22B, RAS-related pr 95.5 0.027 9.3E-07 50.6 7.3 22 246-267 25-46 (192)
330 3sop_A Neuronal-specific septi 95.5 0.0059 2E-07 59.1 2.9 28 246-273 4-31 (270)
331 1sq5_A Pantothenate kinase; P- 95.5 0.0099 3.4E-07 58.5 4.6 36 246-281 82-122 (308)
332 1lw7_A Transcriptional regulat 95.5 0.0063 2.1E-07 61.4 3.2 28 245-272 171-198 (365)
333 2xau_A PRE-mRNA-splicing facto 95.5 0.051 1.7E-06 60.4 10.8 23 245-267 110-132 (773)
334 2p5s_A RAS and EF-hand domain 95.5 0.031 1.1E-06 50.6 7.7 23 245-267 29-51 (199)
335 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0052 1.8E-07 58.7 2.4 33 246-278 31-65 (250)
336 1c1y_A RAS-related protein RAP 95.5 0.042 1.4E-06 47.5 8.3 22 246-267 5-26 (167)
337 2bme_A RAB4A, RAS-related prot 95.5 0.025 8.7E-07 50.2 6.9 23 245-267 11-33 (186)
338 1r8s_A ADP-ribosylation factor 95.5 0.025 8.5E-07 49.0 6.7 21 247-267 3-23 (164)
339 3aez_A Pantothenate kinase; tr 95.5 0.0081 2.8E-07 59.4 3.7 25 246-270 92-116 (312)
340 2fz4_A DNA repair protein RAD2 95.4 0.0091 3.1E-07 56.4 4.0 31 246-276 110-140 (237)
341 2y8e_A RAB-protein 6, GH09086P 95.4 0.023 7.7E-07 49.9 6.4 22 246-267 16-37 (179)
342 2ged_A SR-beta, signal recogni 95.4 0.014 4.9E-07 52.3 5.0 26 243-268 47-72 (193)
343 2bbs_A Cystic fibrosis transme 95.4 0.0054 1.9E-07 60.0 2.3 29 247-275 67-95 (290)
344 1u8z_A RAS-related protein RAL 95.4 0.018 6.3E-07 49.8 5.6 23 245-267 5-27 (168)
345 1x6v_B Bifunctional 3'-phospho 95.4 0.011 3.7E-07 63.9 4.8 32 245-276 53-87 (630)
346 4dsu_A GTPase KRAS, isoform 2B 95.4 0.034 1.2E-06 49.3 7.5 22 246-267 6-27 (189)
347 2v3c_C SRP54, signal recogniti 95.4 0.011 3.8E-07 61.1 4.6 34 245-278 100-136 (432)
348 3eph_A TRNA isopentenyltransfe 95.3 0.0067 2.3E-07 61.8 2.8 31 245-275 3-33 (409)
349 2bov_A RAla, RAS-related prote 95.3 0.059 2E-06 48.6 9.0 22 246-267 16-37 (206)
350 2hup_A RAS-related protein RAB 95.3 0.046 1.6E-06 49.6 8.3 21 246-266 31-51 (201)
351 2qm8_A GTPase/ATPase; G protei 95.3 0.021 7.3E-07 57.0 6.3 30 246-275 57-89 (337)
352 1np6_A Molybdopterin-guanine d 95.3 0.01 3.5E-07 53.4 3.5 33 245-277 7-42 (174)
353 2il1_A RAB12; G-protein, GDP, 95.3 0.041 1.4E-06 49.5 7.7 21 246-266 28-48 (192)
354 2erx_A GTP-binding protein DI- 95.3 0.02 7E-07 49.8 5.5 21 246-266 5-25 (172)
355 2zu0_C Probable ATP-dependent 95.3 0.0071 2.4E-07 58.4 2.6 33 246-278 48-82 (267)
356 1zbd_A Rabphilin-3A; G protein 95.3 0.042 1.4E-06 49.6 7.8 23 245-267 9-31 (203)
357 2h57_A ADP-ribosylation factor 95.2 0.025 8.5E-07 50.7 6.0 23 246-268 23-45 (190)
358 3clv_A RAB5 protein, putative; 95.2 0.04 1.4E-06 49.3 7.4 22 246-267 9-30 (208)
359 1c9k_A COBU, adenosylcobinamid 95.2 0.016 5.4E-07 52.4 4.5 33 247-280 2-34 (180)
360 2ew1_A RAS-related protein RAB 95.2 0.031 1.1E-06 51.0 6.7 22 246-267 28-49 (201)
361 2a9k_A RAS-related protein RAL 95.2 0.025 8.5E-07 50.0 5.9 23 245-267 19-41 (187)
362 3hdt_A Putative kinase; struct 95.2 0.0094 3.2E-07 55.9 3.1 29 246-274 16-44 (223)
363 2gza_A Type IV secretion syste 95.2 0.0058 2E-07 61.7 1.7 29 244-272 175-203 (361)
364 3con_A GTPase NRAS; structural 95.2 0.039 1.3E-06 49.2 7.1 22 246-267 23-44 (190)
365 4dkx_A RAS-related protein RAB 95.1 0.041 1.4E-06 51.2 7.3 21 246-266 15-35 (216)
366 2g6b_A RAS-related protein RAB 95.1 0.048 1.7E-06 47.9 7.5 22 246-267 12-33 (180)
367 2f1r_A Molybdopterin-guanine d 95.1 0.0065 2.2E-07 54.6 1.6 34 246-279 4-40 (171)
368 1zd9_A ADP-ribosylation factor 95.1 0.062 2.1E-06 48.0 8.2 22 246-267 24-45 (188)
369 1xjc_A MOBB protein homolog; s 95.1 0.022 7.4E-07 51.0 4.9 33 246-278 6-41 (169)
370 3tqf_A HPR(Ser) kinase; transf 95.0 0.0097 3.3E-07 53.4 2.5 24 244-267 16-39 (181)
371 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.0075 2.6E-07 60.1 2.0 27 245-271 172-198 (330)
372 2atv_A RERG, RAS-like estrogen 95.0 0.084 2.9E-06 47.4 9.0 23 245-267 29-51 (196)
373 1a7j_A Phosphoribulokinase; tr 95.0 0.0079 2.7E-07 58.8 2.1 36 246-281 7-45 (290)
374 3gd7_A Fusion complex of cysti 95.0 0.0098 3.3E-07 60.6 2.8 33 246-279 49-81 (390)
375 1qhl_A Protein (cell division 95.0 0.0057 1.9E-07 57.6 1.0 25 247-271 30-54 (227)
376 2f9l_A RAB11B, member RAS onco 95.0 0.012 4E-07 53.5 3.0 23 246-268 7-29 (199)
377 2f7s_A C25KG, RAS-related prot 94.9 0.043 1.5E-06 50.2 6.9 22 246-267 27-48 (217)
378 1oix_A RAS-related protein RAB 94.9 0.011 3.7E-07 53.5 2.7 23 246-268 31-53 (191)
379 3q72_A GTP-binding protein RAD 94.9 0.01 3.5E-07 51.6 2.3 21 246-266 4-24 (166)
380 2axn_A 6-phosphofructo-2-kinas 94.9 0.015 5.1E-07 61.6 3.9 32 245-276 36-70 (520)
381 2r6a_A DNAB helicase, replicat 94.8 0.025 8.5E-07 58.8 5.5 39 240-278 199-241 (454)
382 2gf9_A RAS-related protein RAB 94.8 0.03 1E-06 50.1 5.3 22 246-267 24-45 (189)
383 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.015 5.2E-07 50.7 3.1 22 247-268 26-47 (149)
384 2ffh_A Protein (FFH); SRP54, s 94.8 0.04 1.4E-06 56.7 6.6 59 218-278 74-135 (425)
385 1tf7_A KAIC; homohexamer, hexa 94.8 0.016 5.6E-07 61.4 3.9 38 241-278 36-77 (525)
386 2a5j_A RAS-related protein RAB 94.8 0.037 1.3E-06 49.6 5.8 22 246-267 23-44 (191)
387 3kkq_A RAS-related protein M-R 94.8 0.059 2E-06 47.6 7.0 22 246-267 20-41 (183)
388 1fzq_A ADP-ribosylation factor 94.7 0.032 1.1E-06 49.8 5.1 23 245-267 17-39 (181)
389 2j37_W Signal recognition part 94.7 0.026 9E-07 59.4 5.2 35 244-278 101-138 (504)
390 3l0o_A Transcription terminati 94.7 0.043 1.5E-06 55.5 6.3 27 242-268 171-199 (427)
391 2fh5_B SR-beta, signal recogni 94.6 0.032 1.1E-06 51.0 5.1 23 245-267 8-30 (214)
392 2gf0_A GTP-binding protein DI- 94.6 0.05 1.7E-06 48.8 6.3 21 246-266 10-30 (199)
393 1j8m_F SRP54, signal recogniti 94.6 0.024 8.3E-07 55.5 4.4 61 218-280 72-137 (297)
394 2qe7_A ATP synthase subunit al 94.6 0.14 4.9E-06 53.3 10.2 65 242-306 158-230 (502)
395 2fu5_C RAS-related protein RAB 94.5 0.026 8.7E-07 50.1 4.1 22 245-266 9-30 (183)
396 2gk6_A Regulator of nonsense t 94.5 0.017 6E-07 62.5 3.4 33 246-278 197-233 (624)
397 3b5x_A Lipid A export ATP-bind 94.5 0.015 5.2E-07 62.5 2.9 35 245-279 370-404 (582)
398 4i1u_A Dephospho-COA kinase; s 94.5 0.017 5.8E-07 53.6 2.8 31 246-277 11-41 (210)
399 2dyk_A GTP-binding protein; GT 94.5 0.02 6.7E-07 49.4 3.1 22 246-267 3-24 (161)
400 2xxa_A Signal recognition part 94.5 0.033 1.1E-06 57.6 5.2 36 244-279 100-139 (433)
401 2q6t_A DNAB replication FORK h 94.5 0.031 1E-06 58.0 5.0 39 240-278 196-238 (444)
402 1fx0_A ATP synthase alpha chai 94.5 0.13 4.5E-06 53.6 9.7 65 242-306 159-231 (507)
403 1m8p_A Sulfate adenylyltransfe 94.5 0.023 7.8E-07 60.9 4.1 31 246-276 398-432 (573)
404 3qf4_B Uncharacterized ABC tra 94.4 0.014 4.7E-07 63.0 2.4 55 243-297 380-438 (598)
405 1tq4_A IIGP1, interferon-induc 94.4 0.027 9.4E-07 57.7 4.5 23 246-268 71-93 (413)
406 1z2a_A RAS-related protein RAB 94.4 0.019 6.6E-07 49.8 2.9 23 245-267 6-28 (168)
407 1ls1_A Signal recognition part 94.4 0.059 2E-06 52.6 6.7 34 245-278 99-135 (295)
408 2wji_A Ferrous iron transport 94.4 0.016 5.4E-07 50.9 2.2 22 246-267 5-26 (165)
409 3v9p_A DTMP kinase, thymidylat 94.3 0.027 9.3E-07 52.9 3.8 29 247-275 28-63 (227)
410 3fe2_A Probable ATP-dependent 94.3 0.12 4.2E-06 48.3 8.4 17 245-261 67-83 (242)
411 2npi_A Protein CLP1; CLP1-PCF1 94.3 0.018 6.3E-07 59.9 2.8 25 244-268 138-162 (460)
412 3cr8_A Sulfate adenylyltranfer 94.3 0.016 5.6E-07 61.7 2.5 25 246-270 371-395 (552)
413 1u0l_A Probable GTPase ENGC; p 94.2 0.015 5.1E-07 57.1 1.9 31 246-276 171-201 (301)
414 4edh_A DTMP kinase, thymidylat 94.2 0.026 8.9E-07 52.5 3.5 30 246-275 8-40 (213)
415 3p32_A Probable GTPase RV1496/ 94.2 0.039 1.3E-06 55.4 5.0 33 246-278 81-116 (355)
416 1p5z_B DCK, deoxycytidine kina 94.1 0.01 3.6E-07 56.7 0.6 24 246-269 26-49 (263)
417 3tmk_A Thymidylate kinase; pho 94.1 0.037 1.3E-06 51.6 4.3 30 246-275 7-36 (216)
418 2zej_A Dardarin, leucine-rich 94.1 0.016 5.5E-07 51.8 1.8 22 246-267 4-25 (184)
419 2www_A Methylmalonic aciduria 94.1 0.035 1.2E-06 55.6 4.5 23 246-268 76-98 (349)
420 1yqt_A RNAse L inhibitor; ATP- 94.1 0.022 7.5E-07 60.6 3.0 26 246-271 49-74 (538)
421 3euj_A Chromosome partition pr 94.1 0.027 9.3E-07 58.9 3.6 27 245-271 30-56 (483)
422 2ocp_A DGK, deoxyguanosine kin 94.1 0.023 7.9E-07 53.5 2.9 24 246-269 4-27 (241)
423 3b60_A Lipid A export ATP-bind 94.1 0.025 8.6E-07 60.7 3.5 34 246-279 371-404 (582)
424 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.027 9.1E-07 49.5 3.1 22 246-267 9-30 (177)
425 2r9v_A ATP synthase subunit al 94.0 0.13 4.4E-06 53.8 8.5 65 242-306 171-243 (515)
426 2rcn_A Probable GTPase ENGC; Y 94.0 0.016 5.6E-07 58.2 1.7 29 246-274 217-246 (358)
427 1z08_A RAS-related protein RAB 94.0 0.028 9.6E-07 48.9 3.1 22 246-267 8-29 (170)
428 4a1f_A DNAB helicase, replicat 94.0 0.042 1.4E-06 54.8 4.7 39 240-278 42-83 (338)
429 2wjg_A FEOB, ferrous iron tran 93.9 0.023 8E-07 50.6 2.5 22 246-267 9-30 (188)
430 3qf4_A ABC transporter, ATP-bi 93.9 0.018 6.2E-07 61.9 2.0 53 245-297 370-426 (587)
431 2nzj_A GTP-binding protein REM 93.9 0.022 7.7E-07 49.8 2.3 21 246-266 6-26 (175)
432 3llu_A RAS-related GTP-binding 93.9 0.13 4.5E-06 46.2 7.5 22 246-267 22-43 (196)
433 1ky3_A GTP-binding protein YPT 93.9 0.029 1E-06 49.3 3.1 23 245-267 9-31 (182)
434 1tf7_A KAIC; homohexamer, hexa 93.9 0.024 8E-07 60.2 2.8 29 240-268 277-305 (525)
435 1g16_A RAS-related protein SEC 93.9 0.026 8.8E-07 49.1 2.6 22 246-267 5-26 (170)
436 3b1v_A Ferrous iron uptake tra 93.9 0.069 2.4E-06 51.5 5.8 22 246-267 5-26 (272)
437 1bif_A 6-phosphofructo-2-kinas 93.9 0.017 5.8E-07 60.3 1.6 26 245-270 40-65 (469)
438 3qks_A DNA double-strand break 93.8 0.03 1E-06 51.5 3.1 25 246-270 25-49 (203)
439 2qag_B Septin-6, protein NEDD5 93.8 0.023 7.8E-07 58.5 2.5 21 247-267 45-65 (427)
440 1w36_D RECD, exodeoxyribonucle 93.8 0.03 1E-06 60.5 3.4 24 245-268 165-188 (608)
441 3bgw_A DNAB-like replicative h 93.7 0.043 1.5E-06 56.9 4.4 39 240-278 193-234 (444)
442 2wjy_A Regulator of nonsense t 93.7 0.03 1E-06 62.5 3.3 23 246-268 373-395 (800)
443 3mfy_A V-type ATP synthase alp 93.7 0.19 6.6E-06 53.0 9.0 50 242-292 223-274 (588)
444 3ozx_A RNAse L inhibitor; ATP 93.6 0.019 6.4E-07 61.1 1.4 25 247-271 28-52 (538)
445 1q57_A DNA primase/helicase; d 93.6 0.044 1.5E-06 57.6 4.3 39 240-278 238-280 (503)
446 2hxs_A RAB-26, RAS-related pro 93.6 0.031 1.1E-06 49.1 2.6 21 246-266 8-28 (178)
447 3q85_A GTP-binding protein REM 93.6 0.034 1.2E-06 48.4 2.8 21 246-266 4-24 (169)
448 2yl4_A ATP-binding cassette SU 93.5 0.026 9E-07 60.8 2.4 35 245-279 371-405 (595)
449 2gj8_A MNME, tRNA modification 93.5 0.027 9.2E-07 49.9 2.1 22 246-267 6-27 (172)
450 2c9o_A RUVB-like 1; hexameric 93.5 0.14 4.9E-06 53.0 8.0 57 347-411 311-380 (456)
451 1upt_A ARL1, ADP-ribosylation 93.5 0.042 1.4E-06 47.8 3.3 22 245-266 8-29 (171)
452 3lv8_A DTMP kinase, thymidylat 93.5 0.037 1.3E-06 52.3 3.1 24 246-269 29-52 (236)
453 2vp4_A Deoxynucleoside kinase; 93.5 0.033 1.1E-06 52.1 2.8 28 247-275 23-50 (230)
454 3gqb_B V-type ATP synthase bet 93.4 0.22 7.5E-06 51.4 8.9 65 242-306 143-226 (464)
455 2p67_A LAO/AO transport system 93.4 0.084 2.9E-06 52.6 5.8 32 246-277 58-92 (341)
456 4djt_A GTP-binding nuclear pro 93.4 0.026 8.8E-07 51.8 1.8 21 246-266 13-33 (218)
457 2yv5_A YJEQ protein; hydrolase 93.4 0.035 1.2E-06 54.4 2.8 25 246-271 167-191 (302)
458 2fn4_A P23, RAS-related protei 93.4 0.036 1.2E-06 48.7 2.7 22 246-267 11-32 (181)
459 1pui_A ENGB, probable GTP-bind 93.4 0.015 5E-07 53.1 0.0 23 246-268 28-50 (210)
460 2lkc_A Translation initiation 93.3 0.041 1.4E-06 48.3 3.0 22 245-266 9-30 (178)
461 1g8f_A Sulfate adenylyltransfe 93.3 0.039 1.3E-06 58.1 3.3 25 246-270 397-421 (511)
462 1yrb_A ATP(GTP)binding protein 93.3 0.071 2.4E-06 50.4 4.8 34 246-279 16-51 (262)
463 1m7b_A RND3/RHOE small GTP-bin 93.3 0.037 1.3E-06 49.3 2.6 23 245-267 8-30 (184)
464 2xzl_A ATP-dependent helicase 93.2 0.039 1.3E-06 61.6 3.2 34 246-279 377-414 (802)
465 3j16_B RLI1P; ribosome recycli 93.2 0.039 1.3E-06 59.5 3.0 26 246-271 105-130 (608)
466 2ck3_A ATP synthase subunit al 93.2 0.24 8E-06 51.8 8.8 65 242-306 158-238 (510)
467 2wsm_A Hydrogenase expression/ 93.2 0.042 1.4E-06 50.5 2.9 25 245-269 31-55 (221)
468 2c61_A A-type ATP synthase non 93.2 0.2 6.9E-06 51.8 8.2 65 242-306 148-224 (469)
469 4tmk_A Protein (thymidylate ki 93.1 0.043 1.5E-06 51.0 2.9 23 246-268 5-27 (213)
470 3ld9_A DTMP kinase, thymidylat 93.1 0.048 1.6E-06 51.1 3.2 24 247-270 24-47 (223)
471 3vlf_B 26S protease regulatory 93.1 0.033 1.1E-06 44.0 1.8 75 398-483 2-76 (88)
472 3tw8_B RAS-related protein RAB 93.1 0.042 1.5E-06 48.2 2.7 21 246-266 11-31 (181)
473 3vr4_D V-type sodium ATPase su 93.1 0.26 8.8E-06 50.9 8.8 65 242-306 147-223 (465)
474 1mh1_A RAC1; GTP-binding, GTPa 93.1 0.048 1.6E-06 48.2 3.0 22 246-267 7-28 (186)
475 3k53_A Ferrous iron transport 93.1 0.034 1.2E-06 53.4 2.1 23 245-267 4-26 (271)
476 1svi_A GTP-binding protein YSX 93.0 0.033 1.1E-06 49.9 1.9 23 245-267 24-46 (195)
477 1m2o_B GTP-binding protein SAR 93.0 0.042 1.4E-06 49.4 2.6 21 246-266 25-45 (190)
478 3bk7_A ABC transporter ATP-bin 93.0 0.036 1.2E-06 59.8 2.5 26 246-271 119-144 (607)
479 1f6b_A SAR1; gtpases, N-termin 93.0 0.052 1.8E-06 49.2 3.2 21 246-266 27-47 (198)
480 3qf7_A RAD50; ABC-ATPase, ATPa 93.0 0.048 1.6E-06 55.0 3.3 22 247-268 26-47 (365)
481 3t34_A Dynamin-related protein 93.0 0.29 9.9E-06 48.9 9.0 22 246-267 36-57 (360)
482 1t9h_A YLOQ, probable GTPase E 93.0 0.012 4.2E-07 57.9 -1.2 30 246-275 175-204 (307)
483 3ihw_A Centg3; RAS, centaurin, 92.9 0.052 1.8E-06 48.6 3.1 22 246-267 22-43 (184)
484 3c5c_A RAS-like protein 12; GD 92.9 0.052 1.8E-06 48.6 3.1 22 246-267 23-44 (187)
485 3bwd_D RAC-like GTP-binding pr 92.9 0.052 1.8E-06 47.8 3.0 23 245-267 9-31 (182)
486 1z06_A RAS-related protein RAB 92.9 0.053 1.8E-06 48.4 3.1 21 246-266 22-42 (189)
487 2cxx_A Probable GTP-binding pr 92.9 0.034 1.2E-06 49.4 1.7 22 246-267 3-24 (190)
488 1x3s_A RAS-related protein RAB 92.9 0.052 1.8E-06 48.4 3.0 22 246-267 17-38 (195)
489 1vg8_A RAS-related protein RAB 92.9 0.053 1.8E-06 49.0 3.1 23 245-267 9-31 (207)
490 2iwr_A Centaurin gamma 1; ANK 92.9 0.04 1.4E-06 48.5 2.2 22 246-267 9-30 (178)
491 3ozx_A RNAse L inhibitor; ATP 92.8 0.036 1.2E-06 58.9 2.1 25 247-271 297-321 (538)
492 1yqt_A RNAse L inhibitor; ATP- 92.8 0.042 1.5E-06 58.4 2.6 26 246-271 314-339 (538)
493 3lxx_A GTPase IMAP family memb 92.8 0.046 1.6E-06 51.3 2.5 23 245-267 30-52 (239)
494 3bk7_A ABC transporter ATP-bin 92.8 0.043 1.5E-06 59.2 2.6 25 247-271 385-409 (607)
495 3gj0_A GTP-binding nuclear pro 92.7 0.11 3.7E-06 47.7 5.0 23 246-268 17-40 (221)
496 3oaa_A ATP synthase subunit al 92.7 0.15 5E-06 53.2 6.4 33 242-274 158-193 (513)
497 3reg_A RHO-like small GTPase; 92.7 0.058 2E-06 48.4 3.0 22 246-267 25-46 (194)
498 3cph_A RAS-related protein SEC 92.6 0.058 2E-06 49.0 3.0 23 245-267 21-43 (213)
499 4hlc_A DTMP kinase, thymidylat 92.6 0.1 3.6E-06 48.0 4.8 29 247-275 5-35 (205)
500 2bcg_Y Protein YP2, GTP-bindin 92.6 0.052 1.8E-06 49.2 2.6 23 245-267 9-31 (206)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=338.77 Aligned_cols=241 Identities=24% Similarity=0.317 Sum_probs=195.9
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-- 281 (500)
.+..+|++|+|.+++|++|.+.+..++.+++.|.+.|+++++|+|||||||||||++|+|+|++++.+++.++.+.+.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 355699999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 282 ----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 282 ----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+...++.+|..+ .+||||||||||+++..++... .........+++.||+.|
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~----------------------~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS----------------------GGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSS----------------------SGGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCC----------------------CCCcHHHHHHHHHHHHhh
Confidence 456788888776 4799999999999753221110 002234467899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+.+. .+++||+|||+|+.|||||+||||||.+|+|++|+.++|.+|++.++...... .+++..+|
T Consensus 280 Dg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-----------~dvdl~~l 346 (405)
T 4b4t_J 280 DGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-----------RGINLRKV 346 (405)
T ss_dssp HTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-----------SSCCHHHH
T ss_pred hccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-----------ccCCHHHH
Confidence 999653 56999999999999999999999999999999999999999999998653321 13444555
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAE 479 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 479 (500)
++.+.+++++|....|.++.+.++++.+.....++.+.++++..
T Consensus 347 A~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 347 AEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 55555666666666788888888887665556677777776653
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-40 Score=339.02 Aligned_cols=244 Identities=22% Similarity=0.307 Sum_probs=196.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-- 281 (500)
.+..+|++|+|.+++|++|.+.+..++.++++|...|+++++|+|||||||||||++|+|+|++++.+++.++.+.+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 455699999999999999999999999999999999999999999999999999999999999999999999988873
Q ss_pred ----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 282 ----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 282 ----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+...++.+|..+ .+||||||||||+++. .|... ..........+++.||+.+
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---~R~~~-------------------~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT---KRYDS-------------------NSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC---CCSCS-------------------SCSSCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc---cCCCC-------------------CCCccHHHHHHHHHHHHHh
Confidence 345678888766 4799999999999753 22110 0112334567899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+.+ .++++||+|||+++.|||||+||||||++|+|++|+.++|++|++.|+...... .++...+|
T Consensus 314 Dg~~~--~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-----------~dvdl~~L 380 (437)
T 4b4t_I 314 DGFDD--RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-----------EDVNLETL 380 (437)
T ss_dssp HHCCC--SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SCCCHHHH
T ss_pred hCcCC--CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-----------CcCCHHHH
Confidence 99854 456999999999999999999999999999999999999999999998653321 13344455
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESR 482 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (500)
+..+.++++++....|.++.+.++++.+.....++.+.++++...+.
T Consensus 381 A~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 381 VTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 55555555555566688888888887666566677777776664443
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=338.02 Aligned_cols=245 Identities=21% Similarity=0.295 Sum_probs=194.9
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-- 281 (500)
.+..+|++|+|.+++|++|.+.+..++.+++.|...|+++++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 282 ----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 282 ----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+...++.+|..+ .+||||||||||+++. .|... ..........+++.||+.|
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~---~R~~~-------------------~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG---RRFSE-------------------GTSADREIQRTLMELLTQM 312 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC---CCSSS-------------------CCSSTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc---ccccC-------------------CCCcchHHHHHHHHHHHHh
Confidence 345677888765 4799999999999753 22110 0012334567899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|.+|++.|+...... .+++...|
T Consensus 313 Dg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~d~dl~~l 379 (437)
T 4b4t_L 313 DGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-----------GEFDFEAA 379 (437)
T ss_dssp HSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-----------SCCCHHHH
T ss_pred hcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-----------cccCHHHH
Confidence 999653 56999999999999999999999999999999999999999999998643221 12333444
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEESRE 483 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 483 (500)
+..+.++++++....|.++.+.++++.......++.+.++++....++
T Consensus 380 A~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 380 VKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 444444445555556777888888776665666777777776655443
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-40 Score=339.44 Aligned_cols=244 Identities=23% Similarity=0.291 Sum_probs=195.9
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK 281 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~ 281 (500)
.-.++.+|++|+|.+++|++|.+.+..++.+++.|.+.|+++++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ------ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 282 ------DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 282 ------~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
+...++.+|..+ ..||||||||||+++. .|...... .......+++.||+
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~---~R~~~~~~-------------------~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT---KRFDSEKS-------------------GDREVQRTMLELLN 310 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC---CCSSGGGG-------------------TTHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh---ccCCCCCC-------------------CchHHHHHHHHHHH
Confidence 345678888665 4799999999999763 22111000 12234568899999
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHH
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPA 433 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa 433 (500)
.|||+.+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|.+|++.|+...... .+++..
T Consensus 311 ~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-----------~dvdl~ 377 (434)
T 4b4t_M 311 QLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-----------DDINWQ 377 (434)
T ss_dssp HHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-----------SCCCHH
T ss_pred HhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CcCCHH
Confidence 99999653 56999999999999999999999999999999999999999999988543211 134455
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041423 434 DVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEE 480 (500)
Q Consensus 434 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (500)
+|+..+.++++++....|.++.+.++++.+.....++...++++...
T Consensus 378 ~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 378 ELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 56666666666666677888888888776655556666666665533
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-39 Score=334.67 Aligned_cols=240 Identities=22% Similarity=0.270 Sum_probs=193.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-- 281 (500)
.+..+|++|+|.+++|++|.+.+..++.++++|...|+++++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 282 ----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 282 ----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
+...++.+|..+ ..||||||||+|.++..++.. ..........++++||+.|
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~----------------------~~~~~~~~~r~l~~lL~~l 303 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA----------------------QTGSDREVQRILIELLTQM 303 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSS----------------------CSCCCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCC----------------------CCCCChHHHHHHHHHHHHh
Confidence 346788888766 479999999999976322111 0112344567899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEcc-CCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELS-YCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~-~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
||+.+. .+++||+|||+++.|||||+||||||.+|+|| +|+.++|..|++.++...... .++....
T Consensus 304 dg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-----------~~~dl~~ 370 (428)
T 4b4t_K 304 DGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-----------PEADLDS 370 (428)
T ss_dssp HHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-----------TTCCHHH
T ss_pred hCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-----------cccCHHH
Confidence 999764 56999999999999999999999999999996 899999999999998643211 1233444
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
|+..+.++++++....|.++.+.++++.+.....++.++++.+.
T Consensus 371 lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 371 LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 55555555555555667888888888766655666777766553
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-38 Score=329.86 Aligned_cols=243 Identities=21% Similarity=0.249 Sum_probs=195.3
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
-.+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 3455799999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred -----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
+...++.+|..+ .+||||||||||.++..++... .........+++.+|+.
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~----------------------~~~~~~~~~~l~~lL~~ 339 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDG----------------------AGGDNEVQRTMLELITQ 339 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSS----------------------CGGGGHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcC----------------------CCccHHHHHHHHHHHHH
Confidence 345678888766 4799999999999763221110 00123345688999999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPAD 434 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~ 434 (500)
|||+.+ .++++||+|||+++.|||||+||||||.+|+|++|+.++|.+|++.++...... .++....
T Consensus 340 lDg~~~--~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-----------~dvdl~~ 406 (467)
T 4b4t_H 340 LDGFDP--RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-----------RGIRWEL 406 (467)
T ss_dssp HHSSCC--TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-----------SSCCHHH
T ss_pred hhccCC--CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-----------CCCCHHH
Confidence 999854 456999999999999999999999999999999999999999999998653321 1344455
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041423 435 VAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQAEE 480 (500)
Q Consensus 435 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (500)
|+..+.++++++...+|.++.+.++++.+.....++.+.++++...
T Consensus 407 LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 407 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence 5555555555556667888888888876665666777777766543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=1.7e-33 Score=311.35 Aligned_cols=226 Identities=21% Similarity=0.308 Sum_probs=167.6
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.+..+|++++|.++.|++|.+.+..++.+++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
++...++.+|..+. .||||||||||+++..++... ....+...+.+++||+.|
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~----------------------~~~~~~~~rv~~~lL~~m 608 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI----------------------GDGGGAADRVINQILTEM 608 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------------------------CHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCC----------------------CCCchHHHHHHHHHHHHH
Confidence 46778999998874 699999999999764322110 013445678899999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADV 435 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 435 (500)
||+.+. .+++||+|||+|+.|||||+||||||.+|++++|+.++|.+|++.++...... .++....|
T Consensus 609 dg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----------~~~dl~~l 675 (806)
T 3cf2_A 609 DGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----------KDVDLEFL 675 (806)
T ss_dssp HSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----------CC------
T ss_pred hCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----------CCCCHHHH
Confidence 999653 56899999999999999999999999999999999999999999998653221 13445666
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHHhHH
Q 041423 436 AENLMPKSPSDNVEKCLSSLIQALKEGKE 464 (500)
Q Consensus 436 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 464 (500)
++.+.++++++....|.++.+.++++..+
T Consensus 676 a~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 676 AKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888888888876543
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.1e-31 Score=296.82 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=178.5
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++|+|.+++|++|.+.+..++.+++.|...|+.+++|+|||||||||||+||+++|++++.+++.++++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred --CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.+...++.+|..+. +||||||||||.++. .+.. .........++.||..||
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~---~r~~----------------------~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KREK----------------------THGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---TTTT----------------------CCCTTHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhccccc---ccCC----------------------CCChHHHHHHHHHHHHHh
Confidence 24567889998774 699999999999763 2210 023445678999999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
++.+. .+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++....... +++..+|+
T Consensus 334 g~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-----------dvdl~~lA 400 (806)
T 3cf2_A 334 GLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----------DVDLEQVA 400 (806)
T ss_dssp HCCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-----------TCCHHHHH
T ss_pred ccccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-----------ccCHHHHH
Confidence 99664 458999999999999999999999999999999999999999999986543221 23334444
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHhH
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEGK 463 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~~ 463 (500)
..+.+++++|....|.++.+.++++..
T Consensus 401 ~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 401 NETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444556666667766644
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=239.71 Aligned_cols=207 Identities=21% Similarity=0.306 Sum_probs=155.2
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC--
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD-- 282 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~-- 282 (500)
+..+|++|+|.+++|++|.+.+..++.++..|..+|+.+++|++|+||||||||+|+++||+.++.+++.++...+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 346799999999999999999999999999999999999999999999999999999999999999999888776632
Q ss_pred ----hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 283 ----NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 283 ----~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
...+..+|... ..|+|+++||||.++...+.. ........++.++..||
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-------------------------~~~~~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-------------------------ETGASVRVVNQLLTEMD 139 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------------------------CTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-------------------------cchHHHHHHHHHHHhhh
Confidence 23566777764 468999999999864311100 01112346788999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcccc---chhHHHHHHHhh---cCCC
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVET---HTLFETIQKLME---DTKI 430 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~---~~l~~~i~~l~~---~~~~ 430 (500)
|... ...++++++||+|+.||||++||||||.+|++++|+.++|.+|++.++.... ......++.++. ..+|
T Consensus 140 gg~~--~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 140 GLEA--RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp TCCS--TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSC
T ss_pred cccc--cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCc
Confidence 8744 3457889999999999999999999999999999999999999999885321 111111233332 3477
Q ss_pred CHHHHHHH
Q 041423 431 TPADVAEN 438 (500)
Q Consensus 431 spa~i~~~ 438 (500)
|+|||...
T Consensus 218 sgadl~~l 225 (274)
T 2x8a_A 218 TGADLSAL 225 (274)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77777554
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1e-27 Score=239.71 Aligned_cols=186 Identities=21% Similarity=0.347 Sum_probs=156.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.++.+|++|+|.+++++.|.+.+...+..++.|...|+.+++++|||||||||||++|+++|+.++.+++.+++..+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ---CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
.....++.+|..+ ..|+||||||||.+....+.. ...........++.||..+
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~----------------------~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN----------------------IGDGGGAADRVINQILTEM 146 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTT----------------------TCCSSCSCCHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCC----------------------cCCcchHHHHHHHHHHHHh
Confidence 2345567777665 368999999999975322110 0002234456788999999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
|++.. ..+++||+|||.++.||++++|||||+..|+++.|+.++|.+|++.++...
T Consensus 147 ~~~~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 147 DGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp HSSCT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hcccC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence 98753 356899999999999999999999999999999999999999999998643
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=4.3e-27 Score=247.73 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=161.2
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
...+|++|+|.++.|+++.+.+ .++..+..|.+.|...++|+||+||||||||++++++|++++.+++.++++.+.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 4558999999999999997655 568888999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 ---DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ---~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....++.+|..+. .||||||||||.+.. .+... ..........+++.||..+|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---~r~~~-------------------~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---HRGAG-------------------LGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---C----------------------------CHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---hcccc-------------------cCcCcHHHHHHHHHHHHHHh
Confidence 2345677777653 799999999999642 11100 00022334568899999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 435 (500)
++... .+++||+|||.++.|||+++||||||..|.++.|+.++|.+|++.++..........+..+.. ..|++++||
T Consensus 148 ~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL 225 (476)
T 2ce7_A 148 GFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADL 225 (476)
T ss_dssp HSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred ccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHH
Confidence 88543 468999999999999999999999999999999999999999998886432111001222322 346777776
Q ss_pred HHHh
Q 041423 436 AENL 439 (500)
Q Consensus 436 ~~~l 439 (500)
...+
T Consensus 226 ~~lv 229 (476)
T 2ce7_A 226 ENLV 229 (476)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.9e-26 Score=228.02 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=175.0
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK 281 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~ 281 (500)
...++.+|++++|.+++++.|.+.+..++..++.|...|...++++||+||||||||++++++|+.++.+++.+++..+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred C------hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 282 D------NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 282 ~------~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
. ...+..+|... ..|+||||||+|.++.-.... ...........+..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----------------------~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA----------------------LTGGDREVQRTLMQLLA 146 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSS----------------------CCGGGGHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccc----------------------cCCccHHHHHHHHHHHH
Confidence 2 23455666554 367999999999975311100 00012233456777888
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCH
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITP 432 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~sp 432 (500)
.++++.. ..+++||+|||.++.+|++++|+|||+..++++.|+.+++.+|++.++..........+..+.. ..++++
T Consensus 147 ~~~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 147 EMDGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HHHTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCH
T ss_pred HhhCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCH
Confidence 8877643 3568999999999999999999999999999999999999999999876433211111222222 225566
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041423 433 ADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQA 478 (500)
Q Consensus 433 a~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 478 (500)
++|.. .|..+...++.+.......++..+.++..
T Consensus 225 ~~i~~------------l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 225 AELKA------------ICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHH------------HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 66543 34455555555544334444444444443
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.2e-26 Score=228.87 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=162.6
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEeecccC-
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYDVYDLELTAVK- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l~~~~- 281 (500)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34568999999999999999999999999888874 35567899999999999999999999999 8899999987752
Q ss_pred -----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+ .+++||||||||.++. .+.. .........++.||..
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---~~~~----------------------~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRSE----------------------NESEAARRIKTEFLVQ 139 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---CSSS----------------------CCTTHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---cccc----------------------ccchHHHHHHHHHHHH
Confidence 445677777655 4789999999999753 1110 0123345678899999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCCCH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKITP 432 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~sp 432 (500)
+|++.. ...+++||+|||.++.||++++| |||..++++.|+.++|..|++.++......+ ...+..+.+ ..++|+
T Consensus 140 ld~~~~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg 216 (322)
T 1xwi_A 140 MQGVGV-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSG 216 (322)
T ss_dssp HHCSSS-CCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCH
T ss_pred Hhcccc-cCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence 999853 23568999999999999999999 9999999999999999999999987544322 233444544 347788
Q ss_pred HHHHHH
Q 041423 433 ADVAEN 438 (500)
Q Consensus 433 a~i~~~ 438 (500)
+||...
T Consensus 217 adl~~l 222 (322)
T 1xwi_A 217 ADISII 222 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777643
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=4.3e-26 Score=222.36 Aligned_cols=185 Identities=24% Similarity=0.371 Sum_probs=145.4
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
...+.+|++++|.+..++++.+.+ .++..+..|...|...++|+||+||||||||++++++|+.++.+++.+++..+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 345678999999999999997655 567888888899999999999999999999999999999999999999887762
Q ss_pred -----ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+. .++++||||||.+..-.+.. ...........++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~----------------------~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG----------------------LGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTT----------------------SCCTTCHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCC----------------------cCCCchHHHHHHHHHHHH
Confidence 3456777777654 57999999999864211100 000112233578889999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+|++.. ..+++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++..
T Consensus 142 l~~~~~--~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 142 MDGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp HHTCCS--SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhCccc--CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 998753 35689999999999999999999999999999999999999999998754
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=8.7e-27 Score=227.12 Aligned_cols=210 Identities=27% Similarity=0.368 Sum_probs=149.2
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK---- 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~---- 281 (500)
+.+|++++|.++.|+.+.+.+ .++..+..|...|...++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFV-DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHH-HHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 467999999999999996655 568888899999999999999999999999999999999999999999988763
Q ss_pred --ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhh
Q 041423 282 --DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDG 357 (500)
Q Consensus 282 --~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg 357 (500)
....+..+|..+. .++||||||+|.+.. .+.... ...........+..+++.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~---~~~~~~------------------~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGK---KRSTTM------------------SGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------CHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc---cccccc------------------cCccchhHHHHHHHHHHHhhC
Confidence 2345666776553 589999999999742 111000 000122344578888998888
Q ss_pred hhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHH--HHHHhh-cCCCCHHH
Q 041423 358 LWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFET--IQKLME-DTKITPAD 434 (500)
Q Consensus 358 ~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~--i~~l~~-~~~~spa~ 434 (500)
+.. ..+++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.++.......... ...+.. ..++++++
T Consensus 140 ~~~--~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 140 MGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp CCT--TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred cCC--CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 643 3568999999999999999999999999999999999999999999986543222111 233333 34788888
Q ss_pred HHHHh
Q 041423 435 VAENL 439 (500)
Q Consensus 435 i~~~l 439 (500)
|...+
T Consensus 218 l~~l~ 222 (262)
T 2qz4_A 218 IANIC 222 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=1e-25 Score=227.30 Aligned_cols=209 Identities=22% Similarity=0.277 Sum_probs=163.8
Q ss_pred ecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 201 IVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
+.-.++.+|++|+|.+++|+.|.+.+..++..+..+.. +..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34567778999999999999999999999988888876 44556799999999999999999999999999999998765
Q ss_pred C------ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 281 K------DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 281 ~------~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
. ....++.+|..+ ..|+||||||||.+.. .+.. ..........+.++
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~~----------------------~~~~~~~~~~~~ll 142 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRGE----------------------GESEASRRIKTELL 142 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---C----------------------------CCTHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---cCCC----------------------CcchHHHHHHHHHH
Confidence 2 234566677654 4689999999999753 1110 02334556788999
Q ss_pred HHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCC
Q 041423 353 NFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKI 430 (500)
Q Consensus 353 ~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~ 430 (500)
..++++... ..+++||+|||.++.||++|+| ||+..|+++.|+.++|.+|++.++......+ ...+..+.. ..++
T Consensus 143 ~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 143 VQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTC
T ss_pred HHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCC
Confidence 999998542 3568999999999999999999 9999999999999999999999987544322 233444544 3478
Q ss_pred CHHHHHHH
Q 041423 431 TPADVAEN 438 (500)
Q Consensus 431 spa~i~~~ 438 (500)
+++||...
T Consensus 220 sg~di~~l 227 (322)
T 3eie_A 220 SGSDIAVV 227 (322)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88887644
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.93 E-value=3.7e-25 Score=226.18 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=158.4
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc---
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--- 280 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--- 280 (500)
.++.+|++|+|.+++++.|.+.+...+..+..|.. +..+++|+|||||||||||++|+++|++++.+++.+++..+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999888888876 55677899999999999999999999999999999988765
Q ss_pred ---CChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 281 ---KDNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 281 ---~~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
.....++.+|..+ ..++||||||||.+.. .+.. ..........+.||..+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~r~~----------------------~~~~~~~~~~~~ll~~l 178 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---TRGE----------------------GESEASRRIKTELLVQM 178 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------------------------------CTHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---cCCC----------------------CcchHHHHHHHHHHHHh
Confidence 2345567777665 3789999999998652 1110 01233456788899999
Q ss_pred hhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCCCHH
Q 041423 356 DGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKITPA 433 (500)
Q Consensus 356 dg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~spa 433 (500)
|++... ..+++||+|||.++.||++++| ||+..++++.|+.++|..|++.++......+ ...++.+.. ..+++++
T Consensus 179 ~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~ 255 (355)
T 2qp9_X 179 NGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGS 255 (355)
T ss_dssp HHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred hccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHH
Confidence 987532 3568999999999999999999 9999999999999999999999987544322 223444444 3367777
Q ss_pred HHHHH
Q 041423 434 DVAEN 438 (500)
Q Consensus 434 ~i~~~ 438 (500)
||...
T Consensus 256 dl~~l 260 (355)
T 2qp9_X 256 DIAVV 260 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=5.6e-25 Score=233.20 Aligned_cols=207 Identities=24% Similarity=0.326 Sum_probs=164.1
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
.+.+|++|+|.+..+++|.+.+...+..+..|...|.+.++++|||||||||||++|+++|+.++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 ---DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ---~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....++.+|..+. .|+||||||||.+.. .+.. .........++.||..+|
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---~~~~----------------------~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---KREK----------------------THGEVERRIVSQLLTLMD 333 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---CTTS----------------------CCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---cccc----------------------ccchHHHHHHHHHHHHhh
Confidence 2345667776653 679999999999753 1100 012233567889999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 435 (500)
++.. ..+++||+|||.++.||++++|+|||+..|+++.|+.++|.+|++.++..........+..+.. ..++++++|
T Consensus 334 ~~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL 411 (489)
T 3hu3_A 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADL 411 (489)
T ss_dssp HSCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred cccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHH
Confidence 8754 3568999999999999999999999999999999999999999999886432211111222322 336666666
Q ss_pred HHH
Q 041423 436 AEN 438 (500)
Q Consensus 436 ~~~ 438 (500)
...
T Consensus 412 ~~L 414 (489)
T 3hu3_A 412 AAL 414 (489)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=4.4e-25 Score=233.68 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=158.2
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC--
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD-- 282 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~-- 282 (500)
++.+|++|+|.++.|+++.+ +..++..+..|.++|...++|+||+||||||||+|+++||++++.+++.++++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67789999999999999965 456678888899999999999999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 283 ----NTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 283 ----~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
...++.+|.... .|+|+||||||.+....+... .........+++.+|..+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~----------------------~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV----------------------GGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSST----------------------TTSSHHHHHHHHHHHHHGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCc----------------------CCCcHHHHHHHHHHHHHhc
Confidence 235667777664 579999999998642111000 0011223457888999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhh-cCCCCHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLME-DTKITPADV 435 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i 435 (500)
|... ...++++++||.++.||++++||||||.+|+++.|+.++|.+|++.++..........+..+.. ..+++++||
T Consensus 163 g~~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 163 GFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GCCS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred cccc--CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHH
Confidence 8753 3457999999999999999999999999999999999999999998875322110001122222 336777776
Q ss_pred HHH
Q 041423 436 AEN 438 (500)
Q Consensus 436 ~~~ 438 (500)
...
T Consensus 241 ~~l 243 (499)
T 2dhr_A 241 ENL 243 (499)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=1.9e-24 Score=210.25 Aligned_cols=184 Identities=26% Similarity=0.364 Sum_probs=143.1
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
..++.+|++++|.++.+.++.+ +..++..+..+.+.+...++|++|+||||||||+|++++|+.++.+++.++...+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 3455689999999999999865 55567788899999999999999999999999999999999999998888765441
Q ss_pred -----ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....+..+|.... .++++++||||.+....+... ..........++.+++.
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~----------------------~~~~~~~~~~~~~ll~~ 145 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV----------------------GGGNDEREQTLNQLLVE 145 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------------------------CHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccc----------------------cccchHHHHHHHHHHHH
Confidence 1234566777654 579999999998642211000 00111223467788888
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
++|... ....+++++||+|+.||++++|+||||.+|+++.|+.++|.+|++.++.
T Consensus 146 l~g~~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 146 MDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp HHTCCT--TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred HhCCCC--CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 887643 2347888999999999999999999999999999999999999998864
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.92 E-value=2.2e-24 Score=226.82 Aligned_cols=206 Identities=22% Similarity=0.267 Sum_probs=157.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEeecccC-
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYDVYDLELTAVK- 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l~~~~- 281 (500)
.++.+|++|+|.+++++.|.+.+..++..+..|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45678999999999999999999888888877764 34566899999999999999999999999 8899999887752
Q ss_pred -----ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....++.+|..+ ..++||||||||.++. .+.. . ........++.||..
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---~~~~---------------------~-~~~~~~~~~~~lL~~ 261 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---SRSE---------------------N-ESEAARRIKTEFLVQ 261 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---CSSC---------------------C-CCGGGHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---CCCC---------------------c-cccHHHHHHHHHHHH
Confidence 223466677554 4689999999999752 1110 0 223345678889999
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCCCH
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKITP 432 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~sp 432 (500)
+|++.. ...+++||+|||.++.||++|+| ||+..++++.|+.++|..|++.++......+ ...+..+.. ..|+++
T Consensus 262 l~~~~~-~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sg 338 (444)
T 2zan_A 262 MQGVGV-DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSG 338 (444)
T ss_dssp TTCSSC-CCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCH
T ss_pred HhCccc-CCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCH
Confidence 998743 23568999999999999999999 9999999999999999999999986544322 223444443 346777
Q ss_pred HHHHHH
Q 041423 433 ADVAEN 438 (500)
Q Consensus 433 a~i~~~ 438 (500)
+||...
T Consensus 339 adl~~l 344 (444)
T 2zan_A 339 ADISII 344 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777543
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=3.7e-25 Score=216.79 Aligned_cols=185 Identities=30% Similarity=0.417 Sum_probs=143.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
++.+|++++|.++.++.+.+.+ .++..++.|...|...++|+||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 4567999999999999997755 568889999999999999999999999999999999999999999988877652
Q ss_pred ---ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 ---DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ---~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....++.+|..+ ..++||||||+|.+.. .+.... ...........++.|++.++
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~~~~------------------~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK---SRAAGG------------------VVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------------CCCSCSSTTTTTTTTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc---cccccc------------------cCCCchhHHHHHHHHHHHhh
Confidence 122234444443 3679999999999742 110000 00012233456677888888
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+..+ ....++||+|||.++.||++++|+|||+..|+++.|+.++|.++++.++..
T Consensus 144 ~~~~-~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 144 GFGS-ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSSC-SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred Cccc-CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 7643 234589999999999999999999999999999999999999999998864
No 23
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=4.3e-24 Score=212.57 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=110.2
Q ss_pred hhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC------ChHHHHHHHHhh------cCCeEEEecchh
Q 041423 238 RIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK------DNTELRKLLIET------TSKSIIVIEDID 305 (500)
Q Consensus 238 ~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~------~~~~l~~l~~~~------~~~~Il~iDdiD 305 (500)
..+..+++|+|||||||||||++|+++|+.++.+++.++++.+. ....++.+|..+ ..++||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 35677889999999999999999999999999999999988763 234566777665 268999999999
Q ss_pred chhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhh---------hccCCCeEEEEEcCCcC
Q 041423 306 CSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLW---------SACGGERLIVFTTNYVE 376 (500)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~---------~~~~~~~ivI~TTN~~~ 376 (500)
.++. .+.. ............+.|++.+|+.. .....+++||+|||+++
T Consensus 110 ~~~~---~~~~--------------------~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 110 AGAG---RMGG--------------------TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred hhcC---CCCC--------------------CccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 9653 1100 00012234456788999998542 11234689999999999
Q ss_pred cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 377 KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 377 ~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.||++|+||||||.+|++ |+.++|.+|++.++..
T Consensus 167 ~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 167 TLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRT 200 (293)
T ss_dssp C--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGG
T ss_pred cCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccC
Confidence 999999999999999984 6999999999988753
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.91 E-value=2.8e-23 Score=214.81 Aligned_cols=210 Identities=24% Similarity=0.321 Sum_probs=160.9
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK 281 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~ 281 (500)
...+|.+|++++|.+.+++.|.+.+......+..|...+. .++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 4557889999999999999999999998888888877774 467999999999999999999999999999999998763
Q ss_pred ------ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 282 ------DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 282 ------~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
....+..+|... ..++||||||||.++. .+.. .........+..|+.
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---~~~~----------------------~~~~~~~~~~~~ll~ 240 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---ERRE----------------------GEHDASRRLKTEFLI 240 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------------------------CTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---cCCC----------------------ccchHHHHHHHHHHH
Confidence 334456666554 3679999999999752 1110 022334567788999
Q ss_pred HHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhH-HHHHHHhh-cCCCC
Q 041423 354 FIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLF-ETIQKLME-DTKIT 431 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~-~~~~s 431 (500)
.++++.......++||+|||.++.||++++| ||+..|+++.|+.+++..|++.++......+. +.+..+.. ..+++
T Consensus 241 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 241 EFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp HHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC
T ss_pred HhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 9999876555678999999999999999999 99999999999999999999998865433322 23444444 34788
Q ss_pred HHHHHHHh
Q 041423 432 PADVAENL 439 (500)
Q Consensus 432 pa~i~~~l 439 (500)
+++|...+
T Consensus 319 ~~~l~~L~ 326 (389)
T 3vfd_A 319 GSDLTALA 326 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.90 E-value=2.2e-23 Score=205.77 Aligned_cols=185 Identities=26% Similarity=0.360 Sum_probs=143.1
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK- 281 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~- 281 (500)
..++.+|++++|.++.++++.+ +..++..+..+.+.+...++|++|+||||||||+|+++||+.++.+++.++...+.
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467789999999999998855 55567788899999999999999999999999999999999999998888765541
Q ss_pred -----ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 282 -----DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 282 -----~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
....+..+|.... .++++++||||.+....+.. . ..........+..+++.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~---~-------------------~~~~~~~~~~~~~ll~~ 169 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG---V-------------------GGGNDEREQTLNQLLVE 169 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC------------------------------CHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc---c-------------------CCcchHHHHHHHHHHHH
Confidence 1234556676653 57999999999864211100 0 00111223456778888
Q ss_pred HhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 355 IDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
++|... ....+++++||+|+.||++++|+|||+.+|+++.|+.++|.+|++.++..
T Consensus 170 lsgg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 170 MDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225 (278)
T ss_dssp HTTCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred HhCCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence 887643 23478889999999999999999999999999999999999999988743
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.4e-23 Score=211.80 Aligned_cols=207 Identities=25% Similarity=0.333 Sum_probs=157.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC--
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD-- 282 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~-- 282 (500)
+|.+|++++|.+..++.|.+.+..++..+..|...+ ..++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 467899999999999999999998888887777665 45679999999999999999999999999999999987632
Q ss_pred ----hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 283 ----NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 283 ----~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
...++.+|... ..++||||||||.+.. .+.. .........++.+|..++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---~~~~----------------------~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRGD----------------------GEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---C----------------------------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---cCCC----------------------CcchHHHHHHHHHHHHHh
Confidence 23455666554 4689999999999753 1100 012334567888999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCCCHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKITPAD 434 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~spa~ 434 (500)
+........++||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+ .+.+..+.. ..++++++
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 8865555678999999999999999999 9999999999999999999998886433222 223444444 34788888
Q ss_pred HHHHh
Q 041423 435 VAENL 439 (500)
Q Consensus 435 i~~~l 439 (500)
|...+
T Consensus 291 l~~l~ 295 (357)
T 3d8b_A 291 MTQLC 295 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.90 E-value=8e-23 Score=203.20 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=155.1
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC-
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD- 282 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~- 282 (500)
.++.+|++++|.+..++.+.+.+......++.|...+ .+++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3567899999999999999999988888888777665 34679999999999999999999999999999999887631
Q ss_pred -----hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 283 -----NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 283 -----~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
...++.+|... ..++||||||+|.++.-.+.. .........+.|+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-------------------------~~~~~~~~~~~ll~~l 148 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-------------------------EHEASRRLKTEFLVEF 148 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------------------------------CCSHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-------------------------cchHHHHHHHHHHHHH
Confidence 23455555544 468999999999975311100 1223345677889999
Q ss_pred hhhhhc-cCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchh-HHHHHHHhh-cCCCCH
Q 041423 356 DGLWSA-CGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTL-FETIQKLME-DTKITP 432 (500)
Q Consensus 356 dg~~~~-~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~-~~~~sp 432 (500)
|+.... .+..++||+|||.++.+|++++| ||+..++++.|+.+++..|++.++......+ ...+..+.. ..++++
T Consensus 149 ~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 149 DGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp HHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCH
T ss_pred hcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 987543 23468899999999999999999 9999999999999999999999886533222 122344443 347888
Q ss_pred HHHHHH
Q 041423 433 ADVAEN 438 (500)
Q Consensus 433 a~i~~~ 438 (500)
++|...
T Consensus 227 ~~l~~l 232 (297)
T 3b9p_A 227 SDLTAL 232 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777544
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.2e-25 Score=249.98 Aligned_cols=223 Identities=21% Similarity=0.309 Sum_probs=166.0
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc----
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV---- 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~---- 280 (500)
+..+|++++|.+++|+.|.+.+...+..+..|...|+.+++++|||||||||||+||+++|+.++.+++.++++.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 4568999999999999999888877788888888999999999999999999999999999999999999988775
Q ss_pred --CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 281 --KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 281 --~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
.....++.+|..+. .||||||||||.++...+..... ........++.||+.||
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~----------------------~~~~~~~v~~~LL~~ld 609 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD----------------------GGGAADRVINQILTEMD 609 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH----------------------HHHHHHHHHHHHHTTCC
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC----------------------cchhHHHHHHHHHHHHh
Confidence 34466788887653 68999999999975322111000 11234567889999999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHH
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVA 436 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~ 436 (500)
++.. ..+++||+|||+++.||||++||||||.+|++++|+.+++..|++.++....... .+....++
T Consensus 610 ~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-----------~~~l~~la 676 (806)
T 1ypw_A 610 GMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-----------DVDLEFLA 676 (806)
T ss_dssp --------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC---------------CCCCSCSC
T ss_pred cccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCc-----------ccCHHHHH
Confidence 9854 3568999999999999999999999999999999999999999999986432110 11112233
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHHh
Q 041423 437 ENLMPKSPSDNVEKCLSSLIQALKEG 462 (500)
Q Consensus 437 ~~l~~~~~~~~~~~~~~~l~~~l~~~ 462 (500)
....++++++....|.++...++++.
T Consensus 677 ~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 677 KMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666666654
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=1.9e-21 Score=218.17 Aligned_cols=181 Identities=24% Similarity=0.353 Sum_probs=152.4
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC---
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK--- 281 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~--- 281 (500)
++.+|++|+|.++++++|.+.+..++.+++.|..+++..++++||+||||||||+++++||+.++.+++.+++..+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ---ChHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh
Q 041423 282 ---DNTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID 356 (500)
Q Consensus 282 ---~~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld 356 (500)
....+..+|... ..++|+||||||.++...+.. ...........|+..++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-------------------------~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-------------------------HGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-------------------------CSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-------------------------cchHHHHHHHHHHHHhh
Confidence 234566677665 368999999999975321110 12223456788899999
Q ss_pred hhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 357 GLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 357 g~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+... ...+++|+|||+++.+|+++.|+|||+..+.++.|+.++|.++++.++..
T Consensus 334 g~~~--~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp SSCT--TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred hhcc--cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 8854 35689999999999999999999999999999999999999999988754
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.77 E-value=2e-17 Score=167.10 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=130.9
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD 282 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~ 282 (500)
--.|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+++..+..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 346779999999999999988777655331 123457999999999999999999999999999999999888
Q ss_pred hHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhh--
Q 041423 283 NTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWS-- 360 (500)
Q Consensus 283 ~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~-- 360 (500)
...+...+.....+++|||||||.+. ......|+..++...-
T Consensus 94 ~~~~~~~~~~~~~~~vl~lDEi~~l~------------------------------------~~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 94 SGDLAAILTNLSEGDILFIDEIHRLS------------------------------------PAIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp HHHHHHHHHTCCTTCEEEEETGGGCC------------------------------------HHHHHHHHHHHHTSCC--
T ss_pred hhHHHHHHHhccCCCEEEEechhhcC------------------------------------HHHHHHHHHHHHhccchh
Confidence 88888888888899999999999852 1123344444443210
Q ss_pred ------------ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 361 ------------ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 361 ------------~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.....+++|++||....++++|++ ||+..++++.|+.+++..+++.++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 138 IIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp -------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 000137899999999999999999 89999999999999999999988754
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=5.4e-19 Score=186.43 Aligned_cols=182 Identities=11% Similarity=0.020 Sum_probs=116.0
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC--CCEEEEeecccC
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN--YDVYDLELTAVK 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~l~~~~ 281 (500)
.+...|++++|+++.++.+...+..+ ..|..+++|+|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34456899999999999886655432 23556778999999999999999999999999 889999988763
Q ss_pred -----ChHHHHHHHHhh-----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 282 -----DNTELRKLLIET-----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 282 -----~~~~l~~l~~~~-----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
....++..|..+ ..|+||||||||.++.-.+....... ......+-.... ...........+.+
T Consensus 103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~---~~~~~~~~~~l~---~~~~~~~~~~~~~l 176 (456)
T 2c9o_A 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY---GKTISHVIIGLK---TAKGTKQLKLDPSI 176 (456)
T ss_dssp CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-----------------CEEEEEE---ETTEEEEEEECHHH
T ss_pred HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCc---chHHHHHHHHHh---ccccchhHhhhHHH
Confidence 223477888776 46899999999997632211100000 000000000000 00011112233445
Q ss_pred HHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeE--EEEccCCCH
Q 041423 352 LNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDK--HIELSYCTF 399 (500)
Q Consensus 352 L~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~--~I~~~~p~~ 399 (500)
+..++......++.++|++|||+++.+|+++.||||||. .+.++.|+.
T Consensus 177 l~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 177 FESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp HHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred HHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 555553222233335555899999999999999999999 566677743
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=4.8e-17 Score=162.13 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=127.1
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCccc---ceeeeCCCCCcHHHHHHHHHHHhC-------CCEEEEeeccc
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKR---GYLLYGPPGTGKSTMIAAMANLLN-------YDVYDLELTAV 280 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~r---g~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~l~~~ 280 (500)
+++|.+..|+.|.+.+..... +..+...|+..++ ++||+||||||||++|+++|+.++ .+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999887776553 5666677765443 599999999999999999999883 37888888776
Q ss_pred C------ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 281 K------DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 281 ~------~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
. ....+..+|... .++||||||+|.++. .+. ........+..|++.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~---~~~------------------------~~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR---PDN------------------------ERDYGQEAIEILLQV 162 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCC---CC---------------------------CCTHHHHHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhcc---CCC------------------------cccccHHHHHHHHHH
Confidence 3 233455666554 578999999998752 110 112334567778888
Q ss_pred HhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccc
Q 041423 355 IDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVE 413 (500)
Q Consensus 355 ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~ 413 (500)
++.. ..+++||+|||..+ .++|+|++ ||+.+|+|+.|+.+++..|++.++...
T Consensus 163 l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 163 MENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQ 220 (309)
T ss_dssp HHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred HhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHc
Confidence 8753 34578888988654 35799999 999999999999999999999998643
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.73 E-value=1e-18 Score=181.55 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=70.6
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCC-CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC--------
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGK-AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-------- 281 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-------- 281 (500)
.|+|+++.|+.+...+...+++...+...+. .+++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5799999999998888766554444433332 3567999999999999999999999999999999986542
Q ss_pred ChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc
Q 041423 282 DNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA 361 (500)
Q Consensus 282 ~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 361 (500)
....++.+|..... ++.+|++|.... .. ........++.||+.|||+.+.
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~---~~-------------------------~~~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRA---RA-------------------------EDVAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhc---cc-------------------------hhhHHHHHHHHHHHHhhccccc
Confidence 24456666655422 335788776421 10 2334567899999999999653
Q ss_pred cCCCeEEEEE-cCCcCcccHHHhcCCeeeEEEEccCCCHH-HHHHHH
Q 041423 362 CGGERLIVFT-TNYVEKLDPALIRRGRMDKHIELSYCTFQ-GFKVLA 406 (500)
Q Consensus 362 ~~~~~ivI~T-TN~~~~lD~aLlr~GR~d~~I~~~~p~~~-~~~~l~ 406 (500)
. .+ +++ ||+++.||+||+||||||.+|+++.|+.. .+.+|+
T Consensus 146 ~---~v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 146 V---EN-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------
T ss_pred c---cc-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 2 23 454 99999999999999999999999999987 555553
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=1.7e-16 Score=159.11 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=136.9
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChH
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNT 284 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~ 284 (500)
.|.+|++++|.+..++.+...+...... + ..++++||+||||||||++|+++++.++.+++.+++..+....
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChH
Confidence 5678999999999888887766544321 1 2346899999999999999999999999999999999888888
Q ss_pred HHHHHHHh-hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhh---
Q 041423 285 ELRKLLIE-TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWS--- 360 (500)
Q Consensus 285 ~l~~l~~~-~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~--- 360 (500)
.+...+.. ...+++|||||||.+.. .....|+..++...-
T Consensus 79 ~l~~~l~~~~~~~~~l~lDEi~~l~~------------------------------------~~~~~L~~~l~~~~~~~v 122 (324)
T 1hqc_A 79 DLAAILANSLEEGDILFIDEIHRLSR------------------------------------QAEEHLYPAMEDFVMDIV 122 (324)
T ss_dssp HHHHHHTTTCCTTCEEEETTTTSCCH------------------------------------HHHHHHHHHHHHSEEEEC
T ss_pred HHHHHHHHhccCCCEEEEECCccccc------------------------------------chHHHHHHHHHhhhhHHh
Confidence 88888776 67789999999998521 123345555553210
Q ss_pred -----------ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhccccchhH-HHHHHHhhcC
Q 041423 361 -----------ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNVETHTLF-ETIQKLMEDT 428 (500)
Q Consensus 361 -----------~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~ 428 (500)
....++++|++||.++.++++|.+ |++..+.++.|+.+++..++..++......+. +.++.+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 123 IGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRS 200 (324)
T ss_dssp CSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS
T ss_pred ccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 001246899999999999999988 88889999999999999999988754332222 2233344333
Q ss_pred CCCHHHHHHH
Q 041423 429 KITPADVAEN 438 (500)
Q Consensus 429 ~~spa~i~~~ 438 (500)
+=.|.++.+.
T Consensus 201 ~G~~r~l~~~ 210 (324)
T 1hqc_A 201 RGTMRVAKRL 210 (324)
T ss_dssp CSCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3355555443
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=3.6e-16 Score=157.03 Aligned_cols=157 Identities=21% Similarity=0.184 Sum_probs=118.5
Q ss_pred CceeecccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 197 MWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 197 ~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.|. .-..|.+|++++|.++.++.+.+.+. .| ..++.+|++||||||||++++++|+.++.+++.++
T Consensus 15 ~~~--~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILE--QKYRPSTIDECILPAFDKETFKSITS-----------KG-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHH--HHSCCCSTTTSCCCHHHHHHHHHHHH-----------TT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHH--HhhCCCCHHHHhCcHHHHHHHHHHHH-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 454 34568899999999988877765554 12 23457899999999999999999999999999999
Q ss_pred ecccCChHHHHHHHHhh----c---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 277 LTAVKDNTELRKLLIET----T---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 277 l~~~~~~~~l~~l~~~~----~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
++... ...++..+... + .+.||+|||+|.+. + .....
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~---~--------------------------------~~~~~ 124 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG---L--------------------------------AESQR 124 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG---G--------------------------------HHHHH
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC---c--------------------------------HHHHH
Confidence 87754 45555544332 2 57899999999852 0 11344
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.|+..++... .+..+|+|||.+..++++|++ |+. .++|+.|+.+++..|+..++
T Consensus 125 ~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 125 HLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 5777777542 346889999999999999999 664 59999999999887776665
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=2.2e-16 Score=156.98 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=120.5
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhh-CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC-------
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARI-GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD------- 282 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~------- 282 (500)
.++|.++.++.+...+...+......... +...+.++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48899999999988776643321111000 1123568999999999999999999999999999999887632
Q ss_pred -hHHHHHHHHhh-------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHH
Q 041423 283 -NTELRKLLIET-------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNF 354 (500)
Q Consensus 283 -~~~l~~l~~~~-------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ 354 (500)
...+..++... ..++||||||+|.+..-... ...........+.|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~------------------------~~~~~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY------------------------SGADVSREGVQRDLLPL 151 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC------------------------CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc------------------------cccchhHHHHHHHHHHH
Confidence 23466666543 24799999999996421000 00000111235677888
Q ss_pred Hhhhhhc------cCCCeEEEEE----cCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 355 IDGLWSA------CGGERLIVFT----TNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 355 ldg~~~~------~~~~~ivI~T----TN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
+++..-. ....+++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..|++..+
T Consensus 152 le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~ 215 (310)
T 1ofh_A 152 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPH 215 (310)
T ss_dssp HHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred hcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhH
Confidence 8753110 1235678887 5678899999998 999999999999999999998543
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=3.6e-15 Score=139.80 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=113.8
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l 277 (500)
...|.+|++++|.++.++.+.+.+. . + ...+++|+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHH----T-------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHh----C-------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3568889999999888777765443 1 1 12359999999999999999999986 455778887
Q ss_pred cccCChHHHHHHHHhh--------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 278 TAVKDNTELRKLLIET--------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~~--------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
........+...+... ..+.+|+|||+|.+.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------------~~~~ 120 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------------DAQA 120 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------------------------HHHH
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------------------------HHHH
Confidence 7665555554443322 4578999999998521 1234
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.|+..++.. ..+..+|+|||.++.+++++.+ |+. .++++.++.++...++..++.
T Consensus 121 ~l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 121 ALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 466666643 3457889999999999999999 776 799999999999999888764
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=6.3e-16 Score=151.52 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=109.3
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC-------C
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK-------D 282 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~-------~ 282 (500)
+.+++.+...+.++.....+. ..+...+...++++||+||||||||++|+++|+.++.+++.+++...- .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345666666666655422221 223334456677999999999999999999999999999998876421 1
Q ss_pred hHHHHHHHHhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhh
Q 041423 283 NTELRKLLIET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWS 360 (500)
Q Consensus 283 ~~~l~~l~~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~ 360 (500)
...++.+|... ..++||+|||||.++. .+.. ........+..|+..+++...
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~---~~~~-----------------------~~~~~~~~l~~L~~~~~~~~~ 163 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLD---YVPI-----------------------GPRFSNLVLQALLVLLKKAPP 163 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTT---CBTT-----------------------TTBCCHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhc---cCCC-----------------------ChhHHHHHHHHHHHHhcCccC
Confidence 13456677654 3589999999999752 1110 111223344444454444321
Q ss_pred ccCCCeEEEEEcCCcCcccH-HHhcCCeeeEEEEccCCCH-HHHHHHHHH
Q 041423 361 ACGGERLIVFTTNYVEKLDP-ALIRRGRMDKHIELSYCTF-QGFKVLAKN 408 (500)
Q Consensus 361 ~~~~~~ivI~TTN~~~~lD~-aLlr~GR~d~~I~~~~p~~-~~~~~l~~~ 408 (500)
.+..++||+|||.++.+|+ ++.+ ||+..|++|.++. ++...++..
T Consensus 164 -~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 164 -QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp -TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred -CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 2345779999999999998 4544 9999999987765 555555443
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.65 E-value=9e-16 Score=156.91 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=115.9
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHH-HhhCC-CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC-------
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFY-ARIGK-AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD------- 282 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~-~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~------- 282 (500)
|+|++..++.+...+...+...... ...+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6899999999988776544321110 00111 24568999999999999999999999999999999987642
Q ss_pred -hHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 283 -NTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 283 -~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
...+..++... ..++||||||||.+..-.+... ...........+.||..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~----------------------~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPS----------------------ITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccc----------------------cccccchHHHHHHHHHHh
Confidence 23345555543 3578999999998642110000 000111123678888888
Q ss_pred hhhhhc-----------------cCCCeEEEEEcCCc----------Cc-------------------------------
Q 041423 356 DGLWSA-----------------CGGERLIVFTTNYV----------EK------------------------------- 377 (500)
Q Consensus 356 dg~~~~-----------------~~~~~ivI~TTN~~----------~~------------------------------- 377 (500)
||.... ...++++|+|+|.. ..
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 853110 11234555555532 11
Q ss_pred ----ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 378 ----LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 378 ----lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
+.|+|+. |||..+.|++|+.+.+..|+...+
T Consensus 235 ~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 235 IKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp HHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred HHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 6788887 999999999999999999988744
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=1.8e-15 Score=162.66 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=108.1
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCC-cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHH--
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKA-WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTE-- 285 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~-- 285 (500)
.++++|.+++++.+.+.+.... .... .+..+||+||||||||+++++||+.++.+++.+++..+.....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~--------~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQK--------LTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHH--------HSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHH--------hcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4568899988888865443211 1111 3446999999999999999999999999999999887543222
Q ss_pred -------------HHHHHHhhc-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 286 -------------LRKLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 286 -------------l~~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
+...|..+. ...|+||||||.+..- + .....+.|
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~---~-----------------------------~~~~~~~L 199 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD---F-----------------------------RGDPSSAM 199 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------------------------CC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh---h-----------------------------ccCHHHHH
Confidence 223344432 4569999999986421 0 00122334
Q ss_pred HHHHhhhhhc-----------cCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 352 LNFIDGLWSA-----------CGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 352 L~~ldg~~~~-----------~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
|..+|..... .-.+++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 200 L~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 200 LEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp GGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred HHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 4444432110 01457999999999999999999 996 59999999999999999987
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=1.4e-14 Score=144.26 Aligned_cols=161 Identities=15% Similarity=0.258 Sum_probs=115.1
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l 286 (500)
+.++|.+..++.+...+....... .. ...+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 356788888888887776543210 00 01122369999999999999999999998 556999999887554433
Q ss_pred HHHHHh------------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 287 RKLLIE------------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 287 ~~l~~~------------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
..+++. ....+||||||+|.+. ....
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------------------------------~~~~ 136 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------------------------------PDVF 136 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------------------------------HHHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------------------------------HHHH
Confidence 333311 1235899999999842 1245
Q ss_pred hHHHHHHhhhhhccC-------CCeEEEEEcCC--------------------------cCcccHHHhcCCeeeEEEEcc
Q 041423 349 SGLLNFIDGLWSACG-------GERLIVFTTNY--------------------------VEKLDPALIRRGRMDKHIELS 395 (500)
Q Consensus 349 s~lL~~ldg~~~~~~-------~~~ivI~TTN~--------------------------~~~lD~aLlr~GR~d~~I~~~ 395 (500)
+.|+..++.-.-... .+.++|+|||. .+.++|+|++ ||+..+.++
T Consensus 137 ~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~ 214 (311)
T 4fcw_A 137 NILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 214 (311)
T ss_dssp HHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeC
Confidence 667777764321111 25689999998 5678899997 999999999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 041423 396 YCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 396 ~p~~~~~~~l~~~~l~~ 412 (500)
+|+.+++..|++.++..
T Consensus 215 p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 215 PLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CCCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998853
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=7.4e-16 Score=141.08 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=104.2
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 466789999998877777654421 234679999999999999999999987 678888
Q ss_pred EeecccC----C----hHHHHHHHHh---hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 275 LELTAVK----D----NTELRKLLIE---TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 275 l~l~~~~----~----~~~l~~l~~~---~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
+++.... . ...+..++.. ...++||+|||+|.+....+ ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~----------------------------~~~ 135 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK----------------------------ADG 135 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------------------------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCc----------------------------ccc
Confidence 8776542 1 1234445443 34578999999999642100 000
Q ss_pred chhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHH
Q 041423 344 SKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLA 406 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~ 406 (500)
.......+...++ ..++.+|++||.++ .+|+++++ ||+ .|+++.|+.+++.+|+
T Consensus 136 ~~~~~~~l~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 136 AMDAGNMLKPALA------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCCCHHHHHHHHH------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred hHHHHHHHHHhhc------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 1112222333332 24577888888876 78999999 897 6999999999988764
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.61 E-value=3.8e-14 Score=134.36 Aligned_cols=155 Identities=18% Similarity=0.277 Sum_probs=113.0
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC------------
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------ 270 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 270 (500)
-..|.+|++++|.+..++.+...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678899999999888877665532 1 12347999999999999999999998754
Q ss_pred ------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 271 ------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 271 ------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
+++.++.........+..++.... .+.+|+|||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------------ 139 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 139 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------------
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------------
Confidence 334444433233445666666542 47899999999841
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
...+..|+..++.. ..+.++|++||.+..+++++.+ |+ ..++++.++.++..+++..++..
T Consensus 140 ------------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 140 ------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp ------------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHh
Confidence 12345566666532 3467899999999999999998 44 56999999999999999888743
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.60 E-value=1.6e-14 Score=147.33 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=105.3
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeecccC
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAVK 281 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~~ 281 (500)
.+..+|++++|.+..++.+...+. .+. .|..+++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~-~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLE-MIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHH-HHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHH-HHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 334459999999998887643332 222 24445679999999999999999999999975 56666654310
Q ss_pred --------------------------------------------------C-----hHHHHHHHHhhc-----------C
Q 041423 282 --------------------------------------------------D-----NTELRKLLIETT-----------S 295 (500)
Q Consensus 282 --------------------------------------------------~-----~~~l~~l~~~~~-----------~ 295 (500)
. ...++..+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 0 223444432221 1
Q ss_pred CeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEc---
Q 041423 296 KSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTT--- 372 (500)
Q Consensus 296 ~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TT--- 372 (500)
|+||||||+|.+. ....+.|+..++.. ...+++++|.
T Consensus 190 ~~vl~IDEi~~l~------------------------------------~~~~~~L~~~le~~----~~~~~ii~t~~~~ 229 (368)
T 3uk6_A 190 PGVLFIDEVHMLD------------------------------------IESFSFLNRALESD----MAPVLIMATNRGI 229 (368)
T ss_dssp BCEEEEESGGGSB------------------------------------HHHHHHHHHHTTCT----TCCEEEEEESCSE
T ss_pred CceEEEhhccccC------------------------------------hHHHHHHHHHhhCc----CCCeeeeecccce
Confidence 5799999999852 11334455544432 1223333333
Q ss_pred --------CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 373 --------NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 373 --------N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
|.+..++++|++ |+.. ++|++|+.+++..+++.++..
T Consensus 230 ~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 230 TRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp EECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHH
T ss_pred eeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHH
Confidence 357889999999 7766 899999999999999988754
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=1.4e-14 Score=145.99 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=107.9
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELR 287 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~ 287 (500)
.++.++|.++.++.+...+.. ++++||+||||||||++++++|+.++.+++.++++......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356788888888777554431 24899999999999999999999999999999886443333332
Q ss_pred HHH--H-------hhcC---CeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHH
Q 041423 288 KLL--I-------ETTS---KSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFI 355 (500)
Q Consensus 288 ~l~--~-------~~~~---~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~l 355 (500)
... . ..+. .+|+||||+|.+. ....+.|+..+
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~------------------------------------~~~~~~Ll~~l 133 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSP------------------------------------AKVQSALLECM 133 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSC------------------------------------HHHHHHHHHHH
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCC------------------------------------HHHHHHHHHHH
Confidence 100 0 0112 3799999999742 12345556665
Q ss_pred hhh-------hhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 356 DGL-------WSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 356 dg~-------~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+.- ....+...+||+|+|..+ .++++|++ ||+.++++++|+.+++.+|++.++..
T Consensus 134 ~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 134 QEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred hcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 531 111234567888888554 38999999 99999999999999999999988754
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.9e-14 Score=154.01 Aligned_cols=171 Identities=19% Similarity=0.324 Sum_probs=115.4
Q ss_pred cCceeecccCCCccccccCChhhHHHHHHHHHHHhhCh-HHHHhhCC---CcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 196 TMWSHIVFEHPATFETMALEPEKKLEIIEDLVTFSKSR-DFYARIGK---AWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 196 ~~w~~~~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~-~~~~~~g~---~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
..|. .-..|.+|++++|.+..++.+.+.+..+.... ..+...|. +.++++||+||||||||++|+++|++++.+
T Consensus 27 ~lW~--ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWT--VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHH--HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCcc--cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3565 34578899999999999988887776554321 22223333 356789999999999999999999999999
Q ss_pred EEEEeecccCChHHHHHHHH-------------hh-------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhh
Q 041423 272 VYDLELTAVKDNTELRKLLI-------------ET-------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDK 331 (500)
Q Consensus 272 i~~l~l~~~~~~~~l~~l~~-------------~~-------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~ 331 (500)
++.++++.......+...+. .. ..++||+|||+|.+..
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---------------------- 162 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------------- 162 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT----------------------
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch----------------------
Confidence 99999988766544433332 11 4578999999998631
Q ss_pred hhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC--cCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 332 EISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY--VEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 332 ~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~--~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
.....+..|++.++.. . ..||+++|. ...+. .+.| +...|.|+.|+.+++..++...
T Consensus 163 -----------~~~~~l~~L~~~l~~~-----~-~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 163 -----------GDRGGVGQLAQFCRKT-----S-TPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp -----------TSTTHHHHHHHHHHHC-----S-SCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHhc-----C-CCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHH
Confidence 0111345566666532 1 223334443 33444 3544 3457999999999999888776
Q ss_pred hc
Q 041423 410 LN 411 (500)
Q Consensus 410 l~ 411 (500)
+.
T Consensus 222 ~~ 223 (516)
T 1sxj_A 222 AI 223 (516)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.58 E-value=2e-14 Score=150.74 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=109.0
Q ss_pred ccCCCccccccCChhhH---HHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 203 FEHPATFETMALEPEKK---LEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k---~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-.|.+|++++|++..+ +.+...+.. |.. .++||+||||||||+++++||+.++.+++.++...
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GHL--HSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34688999999998877 444443321 111 47999999999999999999999999999988765
Q ss_pred cCChHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHH
Q 041423 280 VKDNTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLN 353 (500)
Q Consensus 280 ~~~~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~ 353 (500)
. ....++.++... ..+.||||||||.+.. .....||.
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------------------------~~q~~LL~ 128 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------------------------SQQDAFLP 128 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------------------------CCHH
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------------------------HHHHHHHH
Confidence 4 345566665543 3689999999998521 12234666
Q ss_pred HHhhhhhccCCCeEEEEEc--CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 354 FIDGLWSACGGERLIVFTT--NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 354 ~ldg~~~~~~~~~ivI~TT--N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.++. +.+++|++| |....++++|++ |+. .+.|+.|+.+++..+++.++..
T Consensus 129 ~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 129 HIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 6653 235666555 455689999999 554 4889999999999999988754
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.56 E-value=1.2e-13 Score=141.83 Aligned_cols=175 Identities=21% Similarity=0.263 Sum_probs=111.7
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHH-----------------hhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYA-----------------RIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~-----------------~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.|+|++.+|+.|...+...+....... ......+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999887754443322100 011234567999999999999999999999999999
Q ss_pred EEeecccCC--------hHHHHHHHHhh------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCC
Q 041423 274 DLELTAVKD--------NTELRKLLIET------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPK 339 (500)
Q Consensus 274 ~l~l~~~~~--------~~~l~~l~~~~------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (500)
.+++..+.. ...+..++... ..++||||||||.+..-.+.... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~----------------------~ 159 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI----------------------T 159 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------------------------
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce----------------------e
Confidence 999887631 22344555433 26799999999986421000000 0
Q ss_pred CCCcchhcHhHHHHHHhhhh----h-------------ccCCCeEEEEEcCC----------------------------
Q 041423 340 EEGSSKVTLSGLLNFIDGLW----S-------------ACGGERLIVFTTNY---------------------------- 374 (500)
Q Consensus 340 ~~~~~~~~ls~lL~~ldg~~----~-------------~~~~~~ivI~TTN~---------------------------- 374 (500)
.........+.|+..+++.. . -...++++|+|||.
T Consensus 160 ~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~ 239 (376)
T 1um8_A 160 RDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQ 239 (376)
T ss_dssp ----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTT
T ss_pred cccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccch
Confidence 11112235777888887531 0 01134577777772
Q ss_pred -------------cCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 375 -------------VEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 375 -------------~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
...+.|+|+. |++..+.|+.++.++...|+...
T Consensus 240 ~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~ 285 (376)
T 1um8_A 240 EAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKP 285 (376)
T ss_dssp TTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred hHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhh
Confidence 1124566766 88888999999999988888753
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.55 E-value=1.6e-14 Score=131.86 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=97.8
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|.+|++++|.+...+.+.+.+. . ..+++++|+||||||||++++++|..+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~----~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS----R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh----C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 46789999999887777665442 1 234579999999999999999999987 777888
Q ss_pred EeecccC----C----hHHHHHHHHhh---cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 275 LELTAVK----D----NTELRKLLIET---TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 275 l~l~~~~----~----~~~l~~l~~~~---~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
+++..+. . ...+..++... ..+.+|+|||+|.+.. .+. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---~~~------------------------~~~~ 136 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---AGA------------------------VAEG 136 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---SSS------------------------SCTT
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---ccc------------------------cccc
Confidence 8766542 1 11244444333 3578999999998642 110 0011
Q ss_pred chhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCC
Q 041423 344 SKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCT 398 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~ 398 (500)
.......|+..++ ...+++|++||.++ .+|+++.+ ||+. |+++.|+
T Consensus 137 ~~~~~~~l~~~~~------~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 137 ALDAGNILKPMLA------RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp SCCTHHHHHHHHH------TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred chHHHHHHHHHHh------cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 1122333333333 24578899998775 68999999 9985 9999885
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=5.4e-14 Score=133.91 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=105.8
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeec
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELT 278 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~ 278 (500)
.+.++.+|+++++.+ ..+.+++.+..+... +.+++++|+||||||||++++++|+.+. .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 455667899999732 223344555544432 1346899999999999999999999875 678888877
Q ss_pred ccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh
Q 041423 279 AVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL 358 (500)
Q Consensus 279 ~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~ 358 (500)
.+... +...+.....+.+|+|||+|.+.. .......|+..++..
T Consensus 90 ~~~~~--~~~~~~~~~~~~vliiDe~~~~~~----------------------------------~~~~~~~l~~~l~~~ 133 (242)
T 3bos_A 90 IHASI--STALLEGLEQFDLICIDDVDAVAG----------------------------------HPLWEEAIFDLYNRV 133 (242)
T ss_dssp GGGGS--CGGGGTTGGGSSEEEEETGGGGTT----------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHhccCCCEEEEeccccccC----------------------------------CHHHHHHHHHHHHHH
Confidence 65321 222333445689999999998521 001134466666655
Q ss_pred hhccCCCeEEEEEcC-CcC---cccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhc
Q 041423 359 WSACGGERLIVFTTN-YVE---KLDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 359 ~~~~~~~~ivI~TTN-~~~---~lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
... ....+|+||| .+. .+++++.+ |++ ..++++.|+.+++.+++..++.
T Consensus 134 ~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 134 AEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 332 2232555554 443 46689998 664 8899999999999999988874
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=6.7e-14 Score=141.61 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=109.9
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC------CCEEEEe
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN------YDVYDLE 276 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------~~i~~l~ 276 (500)
-..|.+|++++|.++.++.+...+ .. |. ..++||+||||||||++++++|+.++ ..+..++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l----~~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTL----KS-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHT----TC-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHH----hc-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 347889999999998887765443 22 11 12499999999999999999999864 3577787
Q ss_pred ecccCChHHHHHHH---Hh---------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCC
Q 041423 277 LTAVKDNTELRKLL---IE---------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEP 338 (500)
Q Consensus 277 l~~~~~~~~l~~l~---~~---------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (500)
++.......++..+ .. .+.+.||+|||+|.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------------- 147 (353)
T 1sxj_D 97 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------------- 147 (353)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------------
T ss_pred cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------------
Confidence 77654444443322 11 12456999999998521
Q ss_pred CCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 339 KEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 339 ~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
...+.|+..++... ....+|++||++..+++++.+ |+. .+.|+.++.++...++...+.
T Consensus 148 -------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 148 -------DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp -------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 13355777776542 345777889999999999999 664 699999999999888887653
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1e-13 Score=138.47 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=109.7
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC-----CCEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN-----YDVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~l 277 (500)
-..|.+|++++|.++.++.+...+.. |. . .++||+||||||||++++++|+.+. .+++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS-M-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC-C-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC-C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 45788899999999888877655432 21 1 2499999999999999999999873 23667776
Q ss_pred cccCChHHHHHHHHh----h----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 278 TAVKDNTELRKLLIE----T----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~----~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
+.......++..+.. . ..+.|++|||+|.+. ....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------------------------------~~~~~ 128 (327)
T 1iqp_A 85 SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT------------------------------------QDAQQ 128 (327)
T ss_dssp TCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC------------------------------------HHHHH
T ss_pred cccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC------------------------------------HHHHH
Confidence 553222222222211 1 357899999999852 11345
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.|+..++.. +.+..+|++||.+..+++++.+ |+. .+.|+.++.++...++..++.
T Consensus 129 ~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 129 ALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp HHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHH
Confidence 566666643 3457888899999999999999 664 699999999999998887764
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1.5e-13 Score=136.95 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=112.3
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l 277 (500)
-..|.+|++++|.+..++.+...+. . | ..+ .+||+||||||||++++++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK----D-------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH----S-------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH----c-------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3568889999999988887765542 1 2 122 39999999999999999999986 345777777
Q ss_pred cccCChHHHHHHHHhh--------c-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 278 TAVKDNTELRKLLIET--------T-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~~--------~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
+.......++.++... . .+.|++|||+|.+.. ...
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------------------------~~~ 124 (323)
T 1sxj_B 81 SDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------------------------------GAQ 124 (323)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------------------------------HHH
T ss_pred ccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------------------------------HHH
Confidence 6654455565554432 2 378999999998521 123
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
..|+..++.. +.+.++|++||.+..+++++.+++. .+.|+.|+.++...++..++.
T Consensus 125 ~~L~~~le~~----~~~~~~il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 125 QALRRTMELY----SNSTRFAFACNQSNKIIEPLQSQCA---ILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HTTHHHHHHT----TTTEEEEEEESCGGGSCHHHHTTSE---EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----CCCceEEEEeCChhhchhHHHhhce---EEeecCCCHHHHHHHHHHHHH
Confidence 4456666543 3457888899999999999999544 599999999999999887764
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=1.5e-13 Score=138.03 Aligned_cols=161 Identities=17% Similarity=0.250 Sum_probs=106.3
Q ss_pred ccCCCcccccc-CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 203 FEHPATFETMA-LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 203 ~~~~~~~~~l~-~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+.+..+|++++ |... ... ...+..+...+ + ...++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HHH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45666899987 4332 221 22233333321 1 234589999999999999999999998 8999999887
Q ss_pred ccCCh--HH-----HHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 279 AVKDN--TE-----LRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 279 ~~~~~--~~-----l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
..... .. +..+......+.+|||||+|.+. +. ......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~---~~-------------------------------~~~~~~l 120 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS---GK-------------------------------ERTQIEF 120 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT---TC-------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc---CC-------------------------------hHHHHHH
Confidence 65210 00 11112223458999999999853 11 0123445
Q ss_pred HHHHhhhhhccCCCeEEEEEcCCcC---cccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhc
Q 041423 352 LNFIDGLWSACGGERLIVFTTNYVE---KLDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 352 L~~ldg~~~~~~~~~ivI~TTN~~~---~lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
+..++.... .+.++|+.+++.+. .++++|.+ |++ ..++++. +.+++..+++.++.
T Consensus 121 ~~~l~~~~~--~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 121 FHIFNTLYL--LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp HHHHHHHHH--TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 666665433 23356666777766 68999999 775 7799999 99999999998874
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=1.7e-13 Score=139.93 Aligned_cols=162 Identities=16% Similarity=0.119 Sum_probs=108.7
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---------CCCEEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---------NYDVYDL 275 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l 275 (500)
+...++.++|.+...+.+...+...+.. ..+++++|+||||||||++++++++.+ +.+++.+
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 3334578999988887776655433221 235689999999999999999999988 7778888
Q ss_pred eecccCCh----------------------HH-HHHHHHh---hcCCeEEEecchhchhcccCcchhhhcccchHHHhhh
Q 041423 276 ELTAVKDN----------------------TE-LRKLLIE---TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKL 329 (500)
Q Consensus 276 ~l~~~~~~----------------------~~-l~~l~~~---~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~ 329 (500)
++....+. .. +..++.. ...+++|+|||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~------------------- 145 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR------------------- 145 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS-------------------
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc-------------------
Confidence 87764332 12 2222222 234779999999986410
Q ss_pred hhhhhccCCCCCCcchhcHhHHHHHHhhhhhcc-CCCeEEEEEcCCc---CcccHHHhcCCeeeE-EEEccCCCHHHHHH
Q 041423 330 DKEISRKEPKEEGSSKVTLSGLLNFIDGLWSAC-GGERLIVFTTNYV---EKLDPALIRRGRMDK-HIELSYCTFQGFKV 404 (500)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~-~~~~ivI~TTN~~---~~lD~aLlr~GR~d~-~I~~~~p~~~~~~~ 404 (500)
...... +...++...... +.++++|++||.+ +.+++++.+ |+.. .++|+.++.++...
T Consensus 146 ------------~~~~~~---l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 146 ------------PGGQDL---LYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRD 208 (387)
T ss_dssp ------------TTHHHH---HHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHH
T ss_pred ------------CCCChH---HHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHH
Confidence 001112 333333222111 3457899999988 789999998 7764 79999999999999
Q ss_pred HHHHhhc
Q 041423 405 LAKNYLN 411 (500)
Q Consensus 405 l~~~~l~ 411 (500)
+++.++.
T Consensus 209 il~~~~~ 215 (387)
T 2v1u_A 209 ILETRAE 215 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988874
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.52 E-value=6.8e-14 Score=139.31 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=107.0
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l 277 (500)
-..|.+|++++|.+..++.+...+. . |. . .++||+||||||||++++++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~-~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN-I-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC-C-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC-C-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 4568889999999888777654332 1 21 1 249999999999999999999987 345777887
Q ss_pred cccCChHHHHHH---HH-hh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 278 TAVKDNTELRKL---LI-ET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 278 ~~~~~~~~l~~l---~~-~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
+.......++.. +. .. ..+.|++|||+|.+.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------------~~~~ 120 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------------DAQA 120 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------------------------------HHHH
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------------------------------HHHH
Confidence 765332222222 22 11 3478999999998521 0122
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.|+..++. .+...++|++||.+..+++++.+ |+. .+.|+.|+.++...++..++.
T Consensus 121 ~L~~~le~----~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 121 ALRRTMEM----YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp TTGGGTSS----SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHH
Confidence 23333332 23457899999999999999999 553 699999999999999887764
No 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.52 E-value=4.2e-13 Score=136.75 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=111.7
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC------------
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------ 270 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 270 (500)
-..|.+|++++|.+..++.+...+.. | ..++.+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34677899999999888877665531 1 22347999999999999999999998864
Q ss_pred ------------CEEEEeecccCChHHHHHHHHhhc------CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 271 ------------DVYDLELTAVKDNTELRKLLIETT------SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 271 ------------~i~~l~l~~~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
+++.++.........++.++.... .+.||+|||+|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------ 132 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 132 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------------------
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------------------
Confidence 344444433222234555555432 36899999999841
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+.|+..++.. +..+++|++||.+..+++++.+++ ..++|+.|+.++...+++.++.
T Consensus 133 ------------~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sr~---~~i~~~~l~~~~~~~~l~~~~~ 192 (373)
T 1jr3_A 133 ------------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILSRC---LQFHLKALDVEQIRHQLEHILN 192 (373)
T ss_dssp ------------HHHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHTTS---EEEECCCCCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHhhe---eEeeCCCCCHHHHHHHHHHHHH
Confidence 12345566666542 456889999999999999999854 4599999999999999988774
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.1e-13 Score=134.04 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=91.7
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEEEeecccCC----------------------hHHHHHHH
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYDLELTAVKD----------------------NTELRKLL 290 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~l~~~~~----------------------~~~l~~l~ 290 (500)
.+.+++|+||||||||++++++++.+ ++.++.++|..+.+ ...+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 45689999999999999999999998 34567788766432 23456666
Q ss_pred Hhh----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCe
Q 041423 291 IET----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGER 366 (500)
Q Consensus 291 ~~~----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ 366 (500)
... ..++|++|||+|.+. + +..+..|++.. .......
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~---~--------------------------------q~~L~~l~~~~----~~~~s~~ 164 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL---S--------------------------------EKILQYFEKWI----SSKNSKL 164 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC---C--------------------------------THHHHHHHHHH----HCSSCCE
T ss_pred HHhhhccCCceEEEEecHHHhh---c--------------------------------chHHHHHHhcc----cccCCcE
Confidence 653 357899999999863 1 11333333322 1233457
Q ss_pred EEEEEcCCcCc----ccHHHhcCCeee-EEEEccCCCHHHHHHHHHHhhcc
Q 041423 367 LIVFTTNYVEK----LDPALIRRGRMD-KHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 367 ivI~TTN~~~~----lD~aLlr~GR~d-~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+||+++|..+. |++++.+ |+. ..|.|+.++.++...|++..+..
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 89999998865 4455566 775 57999999999999999988754
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.51 E-value=9.5e-13 Score=132.96 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=112.7
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCC
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKD 282 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~ 282 (500)
.-.|.+|+.++|.+..++.+...+..-. ..|. .+..++|+||||||||||++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3467789999998766665543332211 1122 2357999999999999999999999999887766665555
Q ss_pred hHHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCC--CCCcchhcHhHHHHHHhhhhh
Q 041423 283 NTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPK--EEGSSKVTLSGLLNFIDGLWS 360 (500)
Q Consensus 283 ~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ls~lL~~ldg~~~ 360 (500)
..++..++.....+.|++|||++.+.. . +.+.+-... .. ..... ..+.....+..
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~----~-------~~e~L~~~~-~~-~~~~i~~~~~~~~~~i~~---------- 146 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK----A-------VEELLYSAI-ED-FQIDIMIGKGPSAKSIRI---------- 146 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH----H-------HHHHHHHHH-HT-SCCCC-----------------------
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH----H-------HHHHHHHHH-Hh-cccceeeccCcccccccc----------
Confidence 666777666656788999999998631 0 001100000 00 00000 00000000000
Q ss_pred ccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 361 ACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 361 ~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.-..+.++.+|+.+..|++++++ ||...+.+++++.+++.++++....
T Consensus 147 -~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 147 -DIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred -cCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHH
Confidence 01235677799999999999999 8988899999999999999987753
No 60
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=4.1e-13 Score=135.73 Aligned_cols=155 Identities=20% Similarity=0.220 Sum_probs=99.7
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC------------
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY------------ 270 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 270 (500)
...|.+|++++|.+..++.+...+ .. +...++||+||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~----~~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTA----VD---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHH----HC---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHh----hC---------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 345678999999988766532211 11 12346999999999999999999999863
Q ss_pred ---------------------CEEEEeecccCChHHH------HHHHHhh-----------cCCeEEEecchhchhcccC
Q 041423 271 ---------------------DVYDLELTAVKDNTEL------RKLLIET-----------TSKSIIVIEDIDCSLDLTG 312 (500)
Q Consensus 271 ---------------------~i~~l~l~~~~~~~~l------~~l~~~~-----------~~~~Il~iDdiD~~~~~~g 312 (500)
+++.+... .+...+ ...+... ..++||||||||.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---- 157 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---- 157 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC----
T ss_pred ccccccchhhhhccccccCCCcccccCCC--cchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC----
Confidence 12211111 112222 1122111 237899999999852
Q ss_pred cchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh----hh-----ccCCCeEEEEEcCCcC-cccHHH
Q 041423 313 QRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL----WS-----ACGGERLIVFTTNYVE-KLDPAL 382 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~----~~-----~~~~~~ivI~TTN~~~-~lD~aL 382 (500)
......|+..++.- .. ..+..+++|+|||..+ .++++|
T Consensus 158 --------------------------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L 205 (350)
T 1g8p_A 158 --------------------------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQL 205 (350)
T ss_dssp --------------------------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHH
T ss_pred --------------------------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHH
Confidence 11344566666531 10 0012578889999755 899999
Q ss_pred hcCCeeeEEEEccCC-CHHHHHHHHHHhh
Q 041423 383 IRRGRMDKHIELSYC-TFQGFKVLAKNYL 410 (500)
Q Consensus 383 lr~GR~d~~I~~~~p-~~~~~~~l~~~~l 410 (500)
++ ||+.++++++| +.+.+..|++..+
T Consensus 206 ~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 206 LD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred Hh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 99 99999999999 5777778887754
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=2.8e-13 Score=138.60 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=108.5
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----------CCCEEEEeec
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----------NYDVYDLELT 278 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----------~~~i~~l~l~ 278 (500)
++++|.++..+.+.+.+..+... ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999888877666543 234589999999999999999999988 8889999876
Q ss_pred ccC-ChH-----------------------H-HHHHHHhhc-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhh
Q 041423 279 AVK-DNT-----------------------E-LRKLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKE 332 (500)
Q Consensus 279 ~~~-~~~-----------------------~-l~~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (500)
... +.. . +..++.... .+.||+|||+|.+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~---------------------- 148 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR---------------------- 148 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC----------------------
Confidence 544 221 1 222222222 2349999999986310
Q ss_pred hhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHh
Q 041423 333 ISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNY 409 (500)
Q Consensus 333 ~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~ 409 (500)
. .... ++..+-... .++.+|+|||.+ +.+++++.+ ||...|+|++++.++...+++.+
T Consensus 149 --------~--~~~~---~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 149 --------R--GGDI---VLYQLLRSD----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp --------T--TSHH---HHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHH
T ss_pred --------C--CCce---eHHHHhcCC----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHH
Confidence 0 0011 122221111 457899999987 789999998 77668999999999999999987
Q ss_pred hc
Q 041423 410 LN 411 (500)
Q Consensus 410 l~ 411 (500)
+.
T Consensus 210 ~~ 211 (384)
T 2qby_B 210 AE 211 (384)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.6e-13 Score=138.41 Aligned_cols=163 Identities=16% Similarity=0.209 Sum_probs=111.1
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh------CCCEEEEe
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL------NYDVYDLE 276 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~ 276 (500)
+.+...++.++|.++..+.+.+.+...+.. ..++.++|+||||||||+|++++++.+ +.+++.++
T Consensus 13 l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 13 LLPDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp GSSSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 333344578899888877776654433221 234579999999999999999999988 88888888
Q ss_pred ecccCC----------------------hHH-HH---HHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhh
Q 041423 277 LTAVKD----------------------NTE-LR---KLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLD 330 (500)
Q Consensus 277 l~~~~~----------------------~~~-l~---~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (500)
+....+ ... +. ..+.....++||+|||+|.+...
T Consensus 84 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-------------------- 143 (386)
T 2qby_A 84 TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK-------------------- 143 (386)
T ss_dssp HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS--------------------
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc--------------------
Confidence 654321 122 12 22222234899999999986421
Q ss_pred hhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCeee-EEEEccCCCHHHHHHHH
Q 041423 331 KEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRMD-KHIELSYCTFQGFKVLA 406 (500)
Q Consensus 331 ~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~d-~~I~~~~p~~~~~~~l~ 406 (500)
.....+..++..++.. .+.++.+|++||.+ +.+++++.+ |+. ..|+++.++.++..+++
T Consensus 144 ------------~~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il 206 (386)
T 2qby_A 144 ------------YNDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp ------------SCSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHH
T ss_pred ------------CcCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHH
Confidence 0122455666666543 23457889999877 567888888 453 47999999999999999
Q ss_pred HHhhc
Q 041423 407 KNYLN 411 (500)
Q Consensus 407 ~~~l~ 411 (500)
..++.
T Consensus 207 ~~~~~ 211 (386)
T 2qby_A 207 TKRAQ 211 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=9.4e-13 Score=147.20 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=112.2
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCCh---
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDN--- 283 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~--- 283 (500)
+.++|++..++.+.+.+....... ...+ .+..++||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~-~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPK-RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTT-SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 457899998888887776544220 0000 111259999999999999999999998 678999999987432
Q ss_pred --HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc
Q 041423 284 --TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA 361 (500)
Q Consensus 284 --~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~ 361 (500)
..+...+. ...++||||||||.+- ....+.|++.+|.-.-.
T Consensus 567 ~~~~l~~~~~-~~~~~vl~lDEi~~~~------------------------------------~~~~~~Ll~~le~g~~~ 609 (758)
T 3pxi_A 567 SGGQLTEKVR-RKPYSVVLLDAIEKAH------------------------------------PDVFNILLQVLEDGRLT 609 (758)
T ss_dssp C---CHHHHH-HCSSSEEEEECGGGSC------------------------------------HHHHHHHHHHHHHSBCC
T ss_pred ccchhhHHHH-hCCCeEEEEeCccccC------------------------------------HHHHHHHHHHhccCeEE
Confidence 22333332 2457899999999741 23566778888752110
Q ss_pred -------cCCCeEEEEEcCCcCc------------ccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 362 -------CGGERLIVFTTNYVEK------------LDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 362 -------~~~~~ivI~TTN~~~~------------lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
...+.+||+|||.+.. +.|+|+. |||..|.|++|+.+++..|++.++.
T Consensus 610 ~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 610 DSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp -----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred cCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1235699999996543 7888888 9999999999999999999999874
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.48 E-value=5.3e-13 Score=149.28 Aligned_cols=155 Identities=15% Similarity=0.250 Sum_probs=112.8
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCC----cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCCh--
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKA----WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDN-- 283 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~-- 283 (500)
+.++|+++.++.+...+.... .|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 346788877777766554322 2322 22259999999999999999999999999999999876321
Q ss_pred -----------------HHHHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchh
Q 041423 284 -----------------TELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKV 346 (500)
Q Consensus 284 -----------------~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
..+...+.. ..++||||||||.+- ..
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------------------------~~ 572 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH------------------------------------PD 572 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC------------------------------------HH
T ss_pred HhhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC------------------------------------HH
Confidence 122333322 457999999999741 23
Q ss_pred cHhHHHHHHhhhhhcc--C-----CCeEEEEEcCCcC-------------------------cccHHHhcCCeeeEEEEc
Q 041423 347 TLSGLLNFIDGLWSAC--G-----GERLIVFTTNYVE-------------------------KLDPALIRRGRMDKHIEL 394 (500)
Q Consensus 347 ~ls~lL~~ldg~~~~~--~-----~~~ivI~TTN~~~-------------------------~lD~aLlr~GR~d~~I~~ 394 (500)
.++.|++.+|.-.-.. + .+.+||+|||... .++|+|++ |||..|.|
T Consensus 573 ~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~ 650 (758)
T 1r6b_X 573 VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWF 650 (758)
T ss_dssp HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEEC
T ss_pred HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceee
Confidence 6677888887421110 1 3468999999743 67899998 99999999
Q ss_pred cCCCHHHHHHHHHHhhc
Q 041423 395 SYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 395 ~~p~~~~~~~l~~~~l~ 411 (500)
++++.+++..|++.++.
T Consensus 651 ~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 651 DHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999999884
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.47 E-value=5.4e-13 Score=140.89 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=103.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEE
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVY 273 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (500)
..|..|+.|+|.++..+.+++.+.. ..+.++||+||||||||++++++|..+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3466899999999888877665532 234579999999999999999999997 77888
Q ss_pred EEeeccc---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 274 DLELTAV---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 274 ~l~l~~~---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
.++++.. .....++.+|.... .++||||| . .. . ..
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---~------~~---------------------------~----a~ 280 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---A------AI---------------------------D----AS 280 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe---C------ch---------------------------h----HH
Confidence 8887621 11234666776554 57899999 1 00 0 00
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+.|+..++ .+++.+|++||..+ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 281 ~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 281 NILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ---CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 11111111 24578999999887 68999999 9975 999999999999999988754
No 66
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=4.4e-13 Score=130.58 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=100.9
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecccCCh
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTAVKDN 283 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~~~~~ 283 (500)
.+|++++|.....+.+++.+...... +.++||+||||||||++|+++++.+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~-----------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS-----------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 36899999999999888877665432 35899999999999999999999875 67999999887422
Q ss_pred HHHHHHHHh-----------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchh
Q 041423 284 TELRKLLIE-----------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKV 346 (500)
Q Consensus 284 ~~l~~l~~~-----------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
.--..+|+. ...+++|||||||.+.. .
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------------------------~ 115 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------M 115 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------------------------H
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------------------------H
Confidence 111223221 13468999999998521 1
Q ss_pred cHhHHHHHHhhhhh-------ccCCCeEEEEEcCCc-------CcccHHHhcCCeee-EEEEccCCCH--HHHHHHHHHh
Q 041423 347 TLSGLLNFIDGLWS-------ACGGERLIVFTTNYV-------EKLDPALIRRGRMD-KHIELSYCTF--QGFKVLAKNY 409 (500)
Q Consensus 347 ~ls~lL~~ldg~~~-------~~~~~~ivI~TTN~~-------~~lD~aLlr~GR~d-~~I~~~~p~~--~~~~~l~~~~ 409 (500)
....|+..++.-.- ....++.||+|||.. ..++++|.+ ||+ ..|.+|..+. ++...+++.+
T Consensus 116 ~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~ 193 (265)
T 2bjv_A 116 VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYF 193 (265)
T ss_dssp HHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHH
Confidence 23456666653210 011246788889874 347789998 885 5677776654 5666777777
Q ss_pred h
Q 041423 410 L 410 (500)
Q Consensus 410 l 410 (500)
+
T Consensus 194 l 194 (265)
T 2bjv_A 194 A 194 (265)
T ss_dssp H
T ss_pred H
Confidence 6
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.46 E-value=7.4e-13 Score=138.75 Aligned_cols=160 Identities=16% Similarity=0.275 Sum_probs=105.2
Q ss_pred cccCCCcccccc-CChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEE
Q 041423 202 VFEHPATFETMA-LEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDL 275 (500)
Q Consensus 202 ~~~~~~~~~~l~-~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l 275 (500)
++.+..+|++++ |..... ....+..+... .+. .++++||||||||||+|++++|+.+ +.+++.+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~------~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKH------PGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH--HHHHHHHHHHS------TTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchHH--HHHHHHHHHhC------CCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 355556899987 544322 22333333332 121 4689999999999999999999998 8888888
Q ss_pred eecccCChHHHH---------HHHHhhc-CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcch
Q 041423 276 ELTAVKDNTELR---------KLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSK 345 (500)
Q Consensus 276 ~l~~~~~~~~l~---------~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (500)
++..+. ..+. .+..... .+.||||||+|.+.. . .
T Consensus 167 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---~-------------------------------~ 210 (440)
T 2z4s_A 167 TSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---K-------------------------------T 210 (440)
T ss_dssp EHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---C-------------------------------H
T ss_pred eHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---C-------------------------------h
Confidence 876642 1121 1222234 689999999998531 1 0
Q ss_pred hcHhHHHHHHhhhhhccCCCeEEEEEcCCcCc---ccHHHhcCCeee--EEEEccCCCHHHHHHHHHHhhc
Q 041423 346 VTLSGLLNFIDGLWSACGGERLIVFTTNYVEK---LDPALIRRGRMD--KHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 346 ~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d--~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.....|+..++.+.. .+..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+.
T Consensus 211 ~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 211 GVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 133456666665532 123455544444554 8899999 665 7799999999999999988864
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=2e-12 Score=132.34 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=111.7
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecccCCh
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTAVKDN 283 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~~~~~ 283 (500)
.++.++|.++..+.+...+.....+ +.+..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 3478999999988888877665543 11112379999999999999999999998 567788887664432
Q ss_pred HHH--------------------------HHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccC
Q 041423 284 TEL--------------------------RKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKE 337 (500)
Q Consensus 284 ~~l--------------------------~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (500)
..+ ...+.....+.||+|||+|.+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------------------------ 137 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------------------------ 137 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------------------------
Confidence 111 112222345789999999974
Q ss_pred CCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc---CcccHHHhcCCeeeE-EEEccCCCHHHHHHHHHHhhc
Q 041423 338 PKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV---EKLDPALIRRGRMDK-HIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 338 ~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~---~~lD~aLlr~GR~d~-~I~~~~p~~~~~~~l~~~~l~ 411 (500)
....+..|+..++........++.+|++||.+ +.+++.+.+ |+.. .|+|++++.++...++...+.
T Consensus 138 ------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 138 ------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp ------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 11244555555544322111357888999988 678899888 7764 799999999999999888764
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.7e-12 Score=131.60 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=103.8
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-CCC----------
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-NYD---------- 271 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~---------- 271 (500)
-..|.+|++++|++..++.+...+. . .| ..+. ++|+|||||||||+++++|+.+ +..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 3468899999999877665543220 1 12 2233 9999999999999999999964 221
Q ss_pred ------------------EEEEeecccC--ChHHHHHHHHhh----------------cCCeEEEecchhchhcccCcch
Q 041423 272 ------------------VYDLELTAVK--DNTELRKLLIET----------------TSKSIIVIEDIDCSLDLTGQRK 315 (500)
Q Consensus 272 ------------------i~~l~l~~~~--~~~~l~~l~~~~----------------~~~~Il~iDdiD~~~~~~g~~~ 315 (500)
++.++.+... ....++..+... ..+.|++|||++.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 2223222211 111244443322 246699999998731
Q ss_pred hhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEcc
Q 041423 316 KKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELS 395 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~ 395 (500)
....+.|+..++.. ..+..+|++||.++.+.+++.+ |+ ..+.|+
T Consensus 148 -----------------------------~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~ 191 (354)
T 1sxj_E 148 -----------------------------KDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCP 191 (354)
T ss_dssp -----------------------------HHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECC
T ss_pred -----------------------------HHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecC
Confidence 12345566666654 2357899999999999999998 55 569999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 041423 396 YCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 396 ~p~~~~~~~l~~~~l~~ 412 (500)
.|+.++...+++..+..
T Consensus 192 ~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 192 APSDSEISTILSDVVTN 208 (354)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999887753
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.43 E-value=1.7e-12 Score=146.85 Aligned_cols=157 Identities=18% Similarity=0.274 Sum_probs=104.3
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..|+.++|.++..+.+++.+. . ..+++++|+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 46789999999877777766442 1 234589999999999999999999988 888999
Q ss_pred EeecccCC--------hHHHHHHHHhhc---CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCc
Q 041423 275 LELTAVKD--------NTELRKLLIETT---SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGS 343 (500)
Q Consensus 275 l~l~~~~~--------~~~l~~l~~~~~---~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (500)
++++.+.. ...+..++.... .++||||||+|.+.. .... ..
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~---~~~~-------------------------~g 283 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---AGKA-------------------------EG 283 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc---cCCc-------------------------cc
Confidence 98877631 234666666553 578999999999642 1100 00
Q ss_pred chhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 344 SKVTLSGLLNFIDGLWSACGGERLIVFTTNYVE----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 344 ~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.....+.|...++ .+++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 284 ~~~~~~~L~~~l~------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 284 AVDAGNMLKPALA------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp --------HHHHH------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 0111222333332 24577888888775 47999999 8986 99999999999999987664
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=3.3e-12 Score=129.11 Aligned_cols=152 Identities=22% Similarity=0.315 Sum_probs=107.2
Q ss_pred ccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEee
Q 041423 203 FEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY-----DVYDLEL 277 (500)
Q Consensus 203 ~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~l 277 (500)
-..|.+|++++|++.+++.|...+. . |. .+ +++|+||||||||++++++|+.+.. .+..++.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVD----E-------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 3578899999998877666544332 2 21 22 3999999999999999999998743 2556666
Q ss_pred cccCChHHHHHHHHhh--------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 278 TAVKDNTELRKLLIET--------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 278 ~~~~~~~~l~~l~~~~--------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
+.......++..+... ..+.|++|||+|.+. ....+
T Consensus 85 ~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~------------------------------------~~~~~ 128 (340)
T 1sxj_C 85 SDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT------------------------------------NAAQN 128 (340)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC------------------------------------HHHHH
T ss_pred cccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC------------------------------------HHHHH
Confidence 5543444555443321 136899999999842 11234
Q ss_pred HHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 350 GLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 350 ~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
.|+..++.. .....+|++||.+..+.+++.+ |+. .+.|+.++.++....+...+
T Consensus 129 ~L~~~le~~----~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 129 ALRRVIERY----TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp HHHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcC----CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHH
Confidence 567777654 2446788899999999999999 553 58999999988888877666
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.42 E-value=7.8e-13 Score=147.89 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=110.0
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEEE
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVYD 274 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (500)
.|..|+.++|.++..+.+++.+. . ..+.++||+||||||||++++++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~----~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC----R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT----S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh----c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 46689999999888777766442 1 245689999999999999999999987 666777
Q ss_pred EeecccC--------ChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcc
Q 041423 275 LELTAVK--------DNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSS 344 (500)
Q Consensus 275 l~l~~~~--------~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
+++..+. ....++.++.... .++||||||+|.++. .+. ....
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---~~~-------------------------~~~~ 299 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---AGA-------------------------ASGG 299 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---SCC-------------------------SSSC
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh---cCC-------------------------CCcc
Confidence 7665542 1345777777665 379999999998752 110 0000
Q ss_pred hhcHhHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 345 KVTLSGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 345 ~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
. ....+.+..+. ..++..+|++||.++ .+|++|.| ||+ .|.|+.|+.+++..|++.++.
T Consensus 300 ~---~~~~~~L~~~l--~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 300 Q---VDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp H---HHHHHHHSSCS--SSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHH--hCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 1 11223333222 134578888888654 57899999 997 699999999999999887653
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.38 E-value=4.4e-12 Score=141.78 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=104.2
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----------CCCEE
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----------NYDVY 273 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (500)
..|..|+.++|.++..+.+++.+.. ..+.++||+||||||||++|+++|..+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3566799999999888887665431 234579999999999999999999997 78888
Q ss_pred EEeeccc---CChHHHHHHHHhhc--CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcH
Q 041423 274 DLELTAV---KDNTELRKLLIETT--SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTL 348 (500)
Q Consensus 274 ~l~l~~~---~~~~~l~~l~~~~~--~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (500)
.+++..- .....++.+|.... .++||||| . .. . ..
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~------~~---------------------------~----~~ 280 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID---A------AI---------------------------D----AS 280 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC---C------------------------------------------
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc---C------ch---------------------------h----HH
Confidence 8777211 12235677776554 58999999 1 00 0 00
Q ss_pred hHHHHHHhhhhhccCCCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhcc
Q 041423 349 SGLLNFIDGLWSACGGERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 349 s~lL~~ldg~~~~~~~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
+.|+..++ .+++.+|+|||..+ .+|++|.| ||. .|.|+.|+.+++..|++.++..
T Consensus 281 ~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 281 NILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ---CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 11111111 34578999999888 79999999 995 5999999999999999987654
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.38 E-value=1.7e-12 Score=114.90 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=64.9
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELR 287 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~ 287 (500)
.++|.....+++.+.+...... ...+||+||||||||++|+++++.. +.+++ +++..+.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 4678888888887777655432 4579999999999999999999987 77888 9999886655555
Q ss_pred HHHHhhcCCeEEEecchhch
Q 041423 288 KLLIETTSKSIIVIEDIDCS 307 (500)
Q Consensus 288 ~l~~~~~~~~Il~iDdiD~~ 307 (500)
.++... .+++|||||||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l 88 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHL 88 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGS
T ss_pred cHHHHc-CCcEEEEcChHHC
Confidence 555544 5689999999985
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=2.6e-11 Score=122.40 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=93.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhC------------------------CCEEEEeec---ccCChHHHHHHHHhhc-
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLN------------------------YDVYDLELT---AVKDNTELRKLLIETT- 294 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~l~---~~~~~~~l~~l~~~~~- 294 (500)
.+++|||+||||||||++|+++|+.+. .+++.++.. .....+.++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 455799999999999999999999875 345666553 2223455666665542
Q ss_pred -----CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEE
Q 041423 295 -----SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIV 369 (500)
Q Consensus 295 -----~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI 369 (500)
.+.|++|||+|.+- ....+.||..++. .+.+.++|
T Consensus 103 ~~~~~~~kvviIdead~l~------------------------------------~~a~naLLk~lEe----p~~~~~~I 142 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLT------------------------------------DAAANALLKTLEE----PPAETWFF 142 (334)
T ss_dssp CCTTSSCEEEEESCGGGBC------------------------------------HHHHHHHHHHHTS----CCTTEEEE
T ss_pred ccccCCcEEEEECchhhcC------------------------------------HHHHHHHHHHhcC----CCCCeEEE
Confidence 46899999999852 1134567777764 23568899
Q ss_pred EEcCCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhh
Q 041423 370 FTTNYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 370 ~TTN~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l 410 (500)
++||.++.+.|+++++++ .+.|+.|+.++...++....
T Consensus 143 l~t~~~~~l~~ti~SRc~---~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 143 LATREPERLLATLRSRCR---LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EEESCGGGSCHHHHTTSE---EEECCCCCHHHHHHHHHHHC
T ss_pred EEeCChHhCcHHHhhcce---eeeCCCCCHHHHHHHHHHhc
Confidence 999999999999999554 49999999999988887776
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.37 E-value=4.4e-12 Score=155.46 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=109.7
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHH-HHHHHHhCCCEEEEeecccCChHHH
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMI-AAMANLLNYDVYDLELTAVKDNTEL 286 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla-~aiA~~l~~~i~~l~l~~~~~~~~l 286 (500)
+|.+++.+..........+...+. .++++||+||||||||++| ++++...+..+..++++...+...+
T Consensus 1242 ~~~~iiVpT~DT~R~~~ll~~~l~-----------~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~ 1310 (2695)
T 4akg_A 1242 MRPDIVIPTIDTIKHEKIFYDLLN-----------SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1310 (2695)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHH-----------HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHH
T ss_pred CccceeEeccchHHHHHHHHHHHH-----------CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHH
Confidence 566666655444444333333332 2468999999999999999 5555555788899999998888888
Q ss_pred HHHHHhh-----------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 287 RKLLIET-----------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 287 ~~l~~~~-----------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
.+.+... ..++|+||||||.... ....++..+.
T Consensus 1311 ~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~------------------------------d~yg~q~~le 1360 (2695)
T 4akg_A 1311 LSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKL------------------------------DKYGSQNVVL 1360 (2695)
T ss_dssp HHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCC------------------------------CSSSCCHHHH
T ss_pred HHHHHHHhhhccccCCccccCCCCCceEEEEecccccccc------------------------------cccCchhHHH
Confidence 7776542 1247999999986310 1111223444
Q ss_pred HHHHHHh--hhhhccC------CCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 350 GLLNFID--GLWSACG------GERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 350 ~lL~~ld--g~~~~~~------~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
.|.+.+| |++.... .++.+|+|||+++ .|+|+|+| || ..|.++.|+.+++..|+..++.
T Consensus 1361 lLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1361 FLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 4444555 3333211 2468999999995 79999999 66 5599999999999999888774
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=1.2e-11 Score=140.08 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=110.9
Q ss_pred cccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHH
Q 041423 209 FETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTE 285 (500)
Q Consensus 209 ~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~ 285 (500)
++.|+|.+..++.+...+.....+. ...+ .+...+||+||||||||++|+++|+.+ +.+++.++++.+.....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~-~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPN-RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSS-SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3567888888888877665433210 0001 112369999999999999999999999 78899999987643211
Q ss_pred -------------------HHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchh
Q 041423 286 -------------------LRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKV 346 (500)
Q Consensus 286 -------------------l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
+...+.. ...+||||||||.+- ..
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~------------------------------------~~ 675 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH------------------------------------PD 675 (854)
T ss_dssp GGGC--------------CHHHHHHH-CSSEEEEESSGGGSC------------------------------------HH
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC------------------------------------HH
Confidence 1111111 346899999998741 23
Q ss_pred cHhHHHHHHhhhhh--cc-----CCCeEEEEEcCC--------------------------cCcccHHHhcCCeeeEEEE
Q 041423 347 TLSGLLNFIDGLWS--AC-----GGERLIVFTTNY--------------------------VEKLDPALIRRGRMDKHIE 393 (500)
Q Consensus 347 ~ls~lL~~ldg~~~--~~-----~~~~ivI~TTN~--------------------------~~~lD~aLlr~GR~d~~I~ 393 (500)
.++.|+..+|.-.- .. -.+.+||+|||. ...+.|+|+. |+|..+.
T Consensus 676 ~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~ 753 (854)
T 1qvr_A 676 VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVV 753 (854)
T ss_dssp HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCB
T ss_pred HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEe
Confidence 56677777773211 00 125689999997 2345677877 9999999
Q ss_pred ccCCCHHHHHHHHHHhhc
Q 041423 394 LSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 394 ~~~p~~~~~~~l~~~~l~ 411 (500)
|.+|+.++...|++.++.
T Consensus 754 ~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 754 FRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.30 E-value=2.7e-12 Score=113.35 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=87.1
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
+++|.+...+++.+.+..+... +.++||+||||||||++|+++++..+ +++.+++..+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 3678888888888887765432 45799999999999999999999988 8888888765321 134444
Q ss_pred HhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEE
Q 041423 291 IETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVF 370 (500)
Q Consensus 291 ~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~ 370 (500)
.. ..+++|||||||.+.. .....|+..++.-. ..++.+|+
T Consensus 72 ~~-a~~~~l~lDei~~l~~------------------------------------~~q~~Ll~~l~~~~---~~~~~iI~ 111 (143)
T 3co5_A 72 QK-AEGGVLYVGDIAQYSR------------------------------------NIQTGITFIIGKAE---RCRVRVIA 111 (143)
T ss_dssp HH-TTTSEEEEEECTTCCH------------------------------------HHHHHHHHHHHHHT---TTTCEEEE
T ss_pred Hh-CCCCeEEEeChHHCCH------------------------------------HHHHHHHHHHHhCC---CCCEEEEE
Confidence 43 4578999999998521 12334566665432 23467788
Q ss_pred EcCCc-Cc----ccHHHhcCCee-eEEEEccCC
Q 041423 371 TTNYV-EK----LDPALIRRGRM-DKHIELSYC 397 (500)
Q Consensus 371 TTN~~-~~----lD~aLlr~GR~-d~~I~~~~p 397 (500)
|||.. +. +++.|.. |+ ...|++|+.
T Consensus 112 ~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 112 SCSYAAGSDGISCEEKLAG--LFSESVVRIPPL 142 (143)
T ss_dssp EEEECTTTC--CHHHHHHH--HSSSEEEEECCC
T ss_pred ecCCCHHHHHhCccHHHHH--HhcCcEEeCCCC
Confidence 88743 33 4556665 53 346777653
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.29 E-value=1.5e-11 Score=122.60 Aligned_cols=152 Identities=15% Similarity=0.174 Sum_probs=100.8
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELR 287 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~ 287 (500)
+++|.....+.+.+.+..... .+.++||+||||||||++|+++++.. +.+++.++|+.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 577888888888777765532 24579999999999999999999976 5789999998874322122
Q ss_pred HHHHh-----------------hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhH
Q 041423 288 KLLIE-----------------TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSG 350 (500)
Q Consensus 288 ~l~~~-----------------~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 350 (500)
.+|+. ...+++|||||||.+.. .....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~------------------------------------~~q~~ 115 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------------------------LMQVR 115 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH------------------------------------HHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH------------------------------------HHHHH
Confidence 33321 12357999999998521 13345
Q ss_pred HHHHHhhhhh-------ccCCCeEEEEEcCCc-------CcccHHHhcCCee-eEEEEccCCC--HHHHHHHHHHhhc
Q 041423 351 LLNFIDGLWS-------ACGGERLIVFTTNYV-------EKLDPALIRRGRM-DKHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 351 lL~~ldg~~~-------~~~~~~ivI~TTN~~-------~~lD~aLlr~GR~-d~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
|+..++...- ....++.||+|||.. ..+++.|.. |+ -..|++|+.. .++...|+..|+.
T Consensus 116 Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 116 LLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred HHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 6666653210 011346788888875 245667777 66 3557777766 4666667777764
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.28 E-value=2.1e-11 Score=129.16 Aligned_cols=146 Identities=17% Similarity=0.104 Sum_probs=93.0
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCC--CEEEEeecccCChHHHH-
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNY--DVYDLELTAVKDNTELR- 287 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~l~~~~~~~~l~- 287 (500)
.++|.++.++.+...+. .+.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 35677776665543321 1247999999999999999999999854 444444432 1222221
Q ss_pred ----------HHHHhh-----cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHH
Q 041423 288 ----------KLLIET-----TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLL 352 (500)
Q Consensus 288 ----------~l~~~~-----~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL 352 (500)
..+... +.++|||||||+.+- ..+.+.|+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~------------------------------------~~~q~~LL 130 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG------------------------------------PAILNTLL 130 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC------------------------------------HHHHHHHH
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc------------------------------------HHHHHHHH
Confidence 112111 135689999998631 23556677
Q ss_pred HHHhh-------hhhccCCCeEEEEEcCCcCc---ccHHHhcCCeeeEEEEccCCCH-HHHHHHHHHhhc
Q 041423 353 NFIDG-------LWSACGGERLIVFTTNYVEK---LDPALIRRGRMDKHIELSYCTF-QGFKVLAKNYLN 411 (500)
Q Consensus 353 ~~ldg-------~~~~~~~~~ivI~TTN~~~~---lD~aLlr~GR~d~~I~~~~p~~-~~~~~l~~~~l~ 411 (500)
..|+. ... .-..+++|+|||.... +.+++++ ||..+|.+++|+. +++..|++....
T Consensus 131 ~~lee~~v~i~G~~~-~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 131 TAINERQFRNGAHVE-KIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp HHHHSSEEECSSSEE-ECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred HHHHHHhccCCCCcC-CcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 77752 111 1123467888886432 4569999 9999999999996 778888887653
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=9e-12 Score=114.01 Aligned_cols=93 Identities=17% Similarity=0.321 Sum_probs=65.1
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecccC
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTAVK 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~~~ 281 (500)
+.+|++++......+.+++.+..|... ...+.+.+++|+||||||||+|++++++.+ +..++.+++..+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 457889887665666666777666653 334446789999999999999999999987 5566666654431
Q ss_pred ChHHHH---------HHHHhhcCCeEEEecchhc
Q 041423 282 DNTELR---------KLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 282 ~~~~l~---------~l~~~~~~~~Il~iDdiD~ 306 (500)
..+. .++.....+.+|+|||++.
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~ 111 (180)
T 3ec2_A 80 --FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180)
T ss_dssp --HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred --HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCC
Confidence 1111 2334445789999999985
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=4.6e-11 Score=118.94 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=93.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh------CCCEEEEeecc-cCChHHHHHHHHhhc------CCeEEEecchhchhccc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL------NYDVYDLELTA-VKDNTELRKLLIETT------SKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~l~~-~~~~~~l~~l~~~~~------~~~Il~iDdiD~~~~~~ 311 (500)
..||||||||+|||++++++|+.+ ..+++.++.++ -..-+.++.++.... ..-|++|||+|.+-
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt--- 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--- 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC---
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhC---
Confidence 479999999999999999999864 46788888764 234455676665542 25799999999852
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEE
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKH 391 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~ 391 (500)
....+.||..|+.. ++..++|++||.+++|.|++++ | .
T Consensus 96 ---------------------------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~ 133 (305)
T 2gno_A 96 ---------------------------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---V 133 (305)
T ss_dssp ---------------------------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---S
T ss_pred ---------------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---e
Confidence 11345677777643 4567888999999999999999 5 5
Q ss_pred EEccCCCHHHHHHHHHHhh
Q 041423 392 IELSYCTFQGFKVLAKNYL 410 (500)
Q Consensus 392 I~~~~p~~~~~~~l~~~~l 410 (500)
++|+.++.++....+...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999998888887765
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=7.2e-12 Score=135.89 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=85.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee----cccC---ChHHHH------HHHHhhcCCeEEEecchhchhcccC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL----TAVK---DNTELR------KLLIETTSKSIIVIEDIDCSLDLTG 312 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l----~~~~---~~~~l~------~l~~~~~~~~Il~iDdiD~~~~~~g 312 (500)
++||+||||||||+||+++|+.++..++.... ..+. ...... .-....+.++|++|||||.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~---- 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMR---- 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCC----
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCC----
Confidence 69999999999999999999999876654221 1110 000000 000111246899999999842
Q ss_pred cchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhh---------hhccCCCeEEEEEcCCcC-------
Q 041423 313 QRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGL---------WSACGGERLIVFTTNYVE------- 376 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~---------~~~~~~~~ivI~TTN~~~------- 376 (500)
....+.|+..|+.- .........||+|||.+.
T Consensus 405 --------------------------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~ 452 (595)
T 3f9v_A 405 --------------------------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER 452 (595)
T ss_dssp --------------------------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS
T ss_pred --------------------------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc
Confidence 12345567776621 111224568999999886
Q ss_pred ------cccHHHhcCCeeeE-EEEccCCCHHHHHHHHHHhhcc
Q 041423 377 ------KLDPALIRRGRMDK-HIELSYCTFQGFKVLAKNYLNV 412 (500)
Q Consensus 377 ------~lD~aLlr~GR~d~-~I~~~~p~~~~~~~l~~~~l~~ 412 (500)
.|++||++ |||. .+..++|+.+ ...|+++.+..
T Consensus 453 ~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 453 PVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 89999999 9984 5667778888 88888887753
No 84
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.13 E-value=1.8e-11 Score=125.13 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=87.2
Q ss_pred hCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhchhcccCcchhhh
Q 041423 239 IGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKA 318 (500)
Q Consensus 239 ~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~ 318 (500)
.+++.++.++|+||||||||||++++++.++..++.++... ......++...+.+++++||++.+..+ .+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~--~r~l-- 235 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGE--SRDL-- 235 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTT--TTTC--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHH--Hhhc--
Confidence 47788888999999999999999999999987765432211 223334667778899999999986431 1100
Q ss_pred cccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHHHhcCCeeeEEEEccC
Q 041423 319 EKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSY 396 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~ 396 (500)
..+....+.+.+.+.+||. +.|+++||+++.+ +++++|||++..+...+
T Consensus 236 ---------------------~~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 236 ---------------------PSGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ---------------------CCCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ---------------------cccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 0001112456777788764 4678899999999 79999999999888866
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.10 E-value=2.2e-09 Score=110.52 Aligned_cols=164 Identities=10% Similarity=0.088 Sum_probs=102.8
Q ss_pred ccccccCChhhHHHHHHHH-HHHhhChHHHHhhCCCcccceee--eCCCCCcHHHHHHHHHHHh---------CCCEEEE
Q 041423 208 TFETMALEPEKKLEIIEDL-VTFSKSRDFYARIGKAWKRGYLL--YGPPGTGKSTMIAAMANLL---------NYDVYDL 275 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l-~~~~~~~~~~~~~g~~~~rg~LL--~GPpGtGKTsla~aiA~~l---------~~~i~~l 275 (500)
..+.++|.+...+.|.+.+ .....+ .+ ..++.++| +||||+|||+|++++++.+ +..++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3467889888888887666 443321 00 12346889 9999999999999999877 4456677
Q ss_pred eecccCChH----------------------H----HHHHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhh
Q 041423 276 ELTAVKDNT----------------------E----LRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKL 329 (500)
Q Consensus 276 ~l~~~~~~~----------------------~----l~~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~ 329 (500)
++....+.. . +...+.....+.+|+|||+|.+...
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~------------------- 153 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS------------------- 153 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC-------------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc-------------------
Confidence 764322211 1 1222222345889999999986310
Q ss_pred hhhhhccCCCCCCcchhcHhHHHHHHhhhhhccC--CCeEEEEEcCCcC---ccc---HHHhcCCeeeEEEEccCCCHHH
Q 041423 330 DKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACG--GERLIVFTTNYVE---KLD---PALIRRGRMDKHIELSYCTFQG 401 (500)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~--~~~ivI~TTN~~~---~lD---~aLlr~GR~d~~I~~~~p~~~~ 401 (500)
.......+..++..++.... .+ ..+.+|+|||.++ .++ +.+.+ ++...+.++.++.++
T Consensus 154 -----------~~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 154 -----------PRIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRE 219 (412)
T ss_dssp -----------TTSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHH
T ss_pred -----------cCcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHH
Confidence 00112344445555544310 02 4577888887665 455 66767 454559999999999
Q ss_pred HHHHHHHhhc
Q 041423 402 FKVLAKNYLN 411 (500)
Q Consensus 402 ~~~l~~~~l~ 411 (500)
..+++...+.
T Consensus 220 ~~~ll~~~~~ 229 (412)
T 1w5s_A 220 LYTILEQRAE 229 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876653
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.05 E-value=3.2e-10 Score=105.42 Aligned_cols=96 Identities=19% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCC-cccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc
Q 041423 205 HPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKA-WKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV 280 (500)
Q Consensus 205 ~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~ 280 (500)
.+.+|+++++.+...+.+++.+..++.. .... .+++++|+||||||||+|++++++.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 3568999988765555666666666543 1111 12689999999999999999999988 667777776543
Q ss_pred CC-------hHHHHHHHHhhcCCeEEEecchhc
Q 041423 281 KD-------NTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 281 ~~-------~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
.. ...+..++.......+|+|||++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~ 126 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGA 126 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 10 001122233333457999999976
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.99 E-value=6.8e-10 Score=102.98 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=47.0
Q ss_pred HHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEec
Q 041423 223 IEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIE 302 (500)
Q Consensus 223 ~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iD 302 (500)
+..+..|++ ++|.++++|||||||||||++|.++|+.++..+... ..-... ..+.......|++||
T Consensus 45 ~~~l~~~~~--------~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f--ans~s~----f~l~~l~~~kIiiLD 110 (212)
T 1tue_A 45 LGALKSFLK--------GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF--VNSTSH----FWLEPLTDTKVAMLD 110 (212)
T ss_dssp HHHHHHHHH--------TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC--CCSSSC----GGGGGGTTCSSEEEE
T ss_pred HHHHHHHHh--------cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE--Eeccch----hhhcccCCCCEEEEE
Confidence 455555554 467777899999999999999999999997654322 111110 112233345699999
Q ss_pred chhc
Q 041423 303 DIDC 306 (500)
Q Consensus 303 diD~ 306 (500)
|+|.
T Consensus 111 Ead~ 114 (212)
T 1tue_A 111 DATT 114 (212)
T ss_dssp EECH
T ss_pred CCCc
Confidence 9985
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.95 E-value=7.2e-09 Score=128.08 Aligned_cols=161 Identities=12% Similarity=0.278 Sum_probs=109.2
Q ss_pred CccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHH-HHHHhCCCEEEEeecccCChHH
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAA-MANLLNYDVYDLELTAVKDNTE 285 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~a-iA~~l~~~i~~l~l~~~~~~~~ 285 (500)
.+|.+++.+.....+....+...+.. ++.+||+||||||||++++. +++..+.+++.++++...+...
T Consensus 1278 ~~~~~ilVPT~DTvR~~~ll~~ll~~-----------~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~ 1346 (3245)
T 3vkg_A 1278 VASPDVVIPTVDTTRHVDVLHAWLSE-----------HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPEL 1346 (3245)
T ss_dssp TTCTTCCCCCHHHHHHHHHHHHHHHT-----------TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHH
T ss_pred CCcccceecchHHHHHHHHHHHHHHC-----------CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHH
Confidence 35666666654444444445444443 45799999999999988765 4444577788999999888888
Q ss_pred HHHHHHhh------------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhc
Q 041423 286 LRKLLIET------------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVT 347 (500)
Q Consensus 286 l~~l~~~~------------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (500)
+...+... ..+.|+|||||+.... +...++..
T Consensus 1347 l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~------------------------------D~yGtQ~~ 1396 (3245)
T 3vkg_A 1347 LLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPST------------------------------DKYGTQRV 1396 (3245)
T ss_dssp HHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCC------------------------------CTTSCCHH
T ss_pred HHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCc------------------------------cccccccH
Confidence 87777531 1136999999986210 12223445
Q ss_pred HhHHHHHHh--hhhhccC------CCeEEEEEcCCcC-----cccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 348 LSGLLNFID--GLWSACG------GERLIVFTTNYVE-----KLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 348 ls~lL~~ld--g~~~~~~------~~~ivI~TTN~~~-----~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
+..|...+| |+..... .+..+|+|+|++. .|+++|+| ||-. +.+++|+.+....|+..++.
T Consensus 1397 ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1397 ITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 566666666 2222111 3467899999884 59999999 6633 99999999999999776653
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.91 E-value=1.4e-09 Score=108.37 Aligned_cols=95 Identities=21% Similarity=0.399 Sum_probs=61.3
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC----CCEEEEeecccC
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN----YDVYDLELTAVK 281 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~l~~~~ 281 (500)
+.+|+++.+.......+++.+..|+.. .+...+.+++|+||||||||+|+.++|+.+. .++..+++..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999987664455565666555542 1111257899999999999999999999765 677766655320
Q ss_pred -------ChHHHHHHHHhhcCCeEEEecchhc
Q 041423 282 -------DNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 282 -------~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
....+...+.......+|+||||+.
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~ 225 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 0111112222334567999999965
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.87 E-value=6.6e-09 Score=113.05 Aligned_cols=53 Identities=32% Similarity=0.340 Sum_probs=41.6
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-.|..|++++|++..++.+...+ .. ...++|+||||||||+++++||+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i----~~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAA----NQ-----------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHH----HT-----------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccccceEECchhhHhhccccc----cC-----------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 45778999999987776554333 21 2479999999999999999999988644
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.81 E-value=8.8e-09 Score=121.71 Aligned_cols=147 Identities=12% Similarity=0.141 Sum_probs=89.8
Q ss_pred CccccccCChhhHHHHHHHHHHHhhC----------hHHHHh------hCCC----------cccc--eeeeCCCCCcHH
Q 041423 207 ATFETMALEPEKKLEIIEDLVTFSKS----------RDFYAR------IGKA----------WKRG--YLLYGPPGTGKS 258 (500)
Q Consensus 207 ~~~~~l~~~~~~k~~l~~~l~~~~~~----------~~~~~~------~g~~----------~~rg--~LL~GPpGtGKT 258 (500)
.+|+++.+.++.|+++++.+...+.. ++.+.. .|+. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 57999999999999999999888843 334444 2222 4455 999999999999
Q ss_pred HHHHHHHHHh---CCCEEEEeecccC----------------------ChHHHHHHHH--hhcCCeEEEecchhchhccc
Q 041423 259 TMIAAMANLL---NYDVYDLELTAVK----------------------DNTELRKLLI--ETTSKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 259 sla~aiA~~l---~~~i~~l~l~~~~----------------------~~~~l~~l~~--~~~~~~Il~iDdiD~~~~~~ 311 (500)
+||+++|.+. +-+...++..... +...|+.++. ....++++++|++|++++..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999866 4445555444311 2334544443 24579999999999976432
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV 375 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~ 375 (500)
+.+. +. .....+...+.++++|..+|++....+ ++|.+||+.
T Consensus 1177 ~~~g----~~---------------~~~~~~~~~r~~~q~l~~~~~~~~~~~---v~v~~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEG----EI---------------GDSHMGLAARMMSQAMRKLAGNLKQSN---TLLIFINQI 1218 (1706)
T ss_dssp HHHS----CT---------------TCCCTTHHHHHHHHHHHHHHHHHHHTT---CEEEEEECE
T ss_pred cccc----cc---------------ccccccHHHHHHHHHHHHHHhhhccCC---eEEEEeccc
Confidence 1110 00 000113344578999999999866433 444477754
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=1.8e-08 Score=89.44 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=44.9
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhch
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCS 307 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~~ 307 (500)
...++|+||+|+|||+|++++++.+ |..++.++...+... .....+.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 4579999999999999999999988 666777777665433 11346789999999873
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=1.1e-07 Score=117.10 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=92.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhc-CCeEEEecchhchhcccCcchhhhcccc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSS 322 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~ 322 (500)
..|.+++||||||||++++++|..+|.+++.++|+...+...+.++|..+. .+++++|||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 357899999999999999999999999999999999988899988887665 479999999998421
Q ss_pred hHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh----hhhh------------ccCCCeEEEEEcC----CcCcccHHH
Q 041423 323 DDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID----GLWS------------ACGGERLIVFTTN----YVEKLDPAL 382 (500)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld----g~~~------------~~~~~~ivI~TTN----~~~~lD~aL 382 (500)
.+++.+-..++ .+.. .......|++|.| ....|+++|
T Consensus 712 -----------------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~L 768 (2695)
T 4akg_A 712 -----------------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENL 768 (2695)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHH
Confidence 12222211111 1100 0112346788888 445799999
Q ss_pred hcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 383 IRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 383 lr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
.+ || +.|.|.+|+.+...+|.-
T Consensus 769 k~--~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 769 KK--SF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HT--TE-EEEECCCCCHHHHHHHHH
T ss_pred Hh--he-EEEEeeCCCHHHHHHHHH
Confidence 99 66 569999999988877743
No 94
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.77 E-value=1.8e-08 Score=93.88 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=74.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh--------C-CCEEEEeecccCC---------------------hHHHHHHHH-hhc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL--------N-YDVYDLELTAVKD---------------------NTELRKLLI-ETT 294 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l--------~-~~i~~l~l~~~~~---------------------~~~l~~l~~-~~~ 294 (500)
-+|++|+||||||+++.+++... | .+++..++.++.. ...+..++. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 47899999999999988865432 3 6676666554321 122333221 123
Q ss_pred CCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCC
Q 041423 295 SKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNY 374 (500)
Q Consensus 295 ~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~ 374 (500)
.++||+|||++.+++..+. ... . ..++..+.. ....+.-||++|++
T Consensus 87 ~~~vliIDEAq~l~~~~~~--------------------------~~e-~----~rll~~l~~---~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA--------------------------GSK-I----PENVQWLNT---HRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT--------------------------TCC-C----CHHHHGGGG---TTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccc--------------------------cch-h----HHHHHHHHh---cCcCCeEEEEECCC
Confidence 4899999999997521100 000 0 123333332 23345678899999
Q ss_pred cCcccHHHhcCCeeeEEEEccCCCH
Q 041423 375 VEKLDPALIRRGRMDKHIELSYCTF 399 (500)
Q Consensus 375 ~~~lD~aLlr~GR~d~~I~~~~p~~ 399 (500)
++.||.++++ |++.+++++.+..
T Consensus 133 ~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 133 PKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGGBCHHHHT--TEEEEEEEEECSS
T ss_pred HHHHhHHHHH--HhheEEEEcCccc
Confidence 9999999887 9999999987653
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.74 E-value=7.7e-09 Score=102.53 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee------cccC-ChHH-HHHHHHhhcCCeEEEecchhchhccc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL------TAVK-DNTE-LRKLLIETTSKSIIVIEDIDCSLDLT 311 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l------~~~~-~~~~-l~~l~~~~~~~~Il~iDdiD~~~~~~ 311 (500)
|++.++.++|+||||||||+|+.++|...+.++..+++ +... +... +..+........+||||+|+.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 34555568999999999999999999876666444444 1111 2222 22233333222299999999863211
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCcCcccHH
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPA 381 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~~~lD~a 381 (500)
... + ..+.....+..++..|+++.... +.++|++|| +...|++
T Consensus 199 ~~~-----------------------s-~~G~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 199 GGN-----------------------T-TSGGISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDK 241 (331)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSS
T ss_pred ccc-----------------------c-ccchHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-Ccccchh
Confidence 000 0 11223456778888888775532 467888888 5555554
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.73 E-value=8.3e-08 Score=92.84 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=40.5
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhcCCeEEEecchhc
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~~~~Il~iDdiD~ 306 (500)
+++++++||||||||||+++.|||+.+.. ...++.+.. ...+.....+.|++.||...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~ 159 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE------NFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS------SCTTGGGSSCSEEEECSCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc------ccccccccccEEEEeccccc
Confidence 45668999999999999999999998765 233333211 11344556677888887765
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=1.6e-07 Score=94.16 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=41.3
Q ss_pred ccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 208 TFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 208 ~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-+.++|-++..+.|.+ + .. +.++++||+|+|||+|++.+++.++.+++.+++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 34567777665555543 3 21 37999999999999999999999887777777664
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.53 E-value=3.6e-06 Score=84.04 Aligned_cols=56 Identities=21% Similarity=0.126 Sum_probs=41.1
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+..-+.++|.+...+.|.+.+.. | +.++++||+|+|||+|++.+++.++ .+.+++.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 33446678887777766554431 2 4799999999999999999999875 5556654
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.46 E-value=2.1e-06 Score=88.03 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=96.2
Q ss_pred ccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecccCChHHH
Q 041423 210 ETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTAVKDNTEL 286 (500)
Q Consensus 210 ~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~~~~~~~l 286 (500)
+.+++.....+++.+.+..... ....+|++|++||||+++++++..... .+++.++|..+....--
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4566666666677666655322 234689999999999999999998764 68999999987543333
Q ss_pred HHHHHhh-----------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHh
Q 041423 287 RKLLIET-----------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLS 349 (500)
Q Consensus 287 ~~l~~~~-----------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 349 (500)
..+|+.. ...++||||||+.+- .....
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------------------------~~~q~ 249 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS------------------------------------LEAQA 249 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCC------------------------------------HHHHH
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCC------------------------------------HHHHH
Confidence 4455421 246799999999852 12344
Q ss_pred HHHHHHhhhh-hcc------CCCeEEEEEcCCc-------CcccHHHhcCCee-eEEEEccCCC--HHHHHHHHHHhhc
Q 041423 350 GLLNFIDGLW-SAC------GGERLIVFTTNYV-------EKLDPALIRRGRM-DKHIELSYCT--FQGFKVLAKNYLN 411 (500)
Q Consensus 350 ~lL~~ldg~~-~~~------~~~~ivI~TTN~~-------~~lD~aLlr~GR~-d~~I~~~~p~--~~~~~~l~~~~l~ 411 (500)
.||..++.-. ... ..++-||+|||.. ..+.+.|.- |+ ...|++|+.. .+....|+..|+.
T Consensus 250 ~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 250 KLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 5666665310 000 1235688888863 233444443 33 3557777665 3677777777764
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.41 E-value=1.7e-06 Score=78.94 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=24.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.+.|.||||+|||||++.|++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999999875543
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=7.3e-06 Score=101.87 Aligned_cols=141 Identities=17% Similarity=0.139 Sum_probs=97.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHhhc-CCeEEEecchhchhcccCcchhhhcccch
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETT-SKSIIVIEDIDCSLDLTGQRKKKAEKSSD 323 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~-~~~Il~iDdiD~~~~~~g~~~~~~~~~~~ 323 (500)
.|..+.||+|||||.+++.+|..+|.+++.++|+.-.+...+.++|.... ..+..+|||++.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~-------------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE-------------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH--------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH--------------
Confidence 46679999999999999999999999999999999888888888887665 588999999998410
Q ss_pred HHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh----hhhh-------------ccCCCeEEEEEcCC----cCcccHHH
Q 041423 324 DEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID----GLWS-------------ACGGERLIVFTTNY----VEKLDPAL 382 (500)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld----g~~~-------------~~~~~~ivI~TTN~----~~~lD~aL 382 (500)
.++|.+...+. .+.. .-..+..||+|.|. ...|+++|
T Consensus 671 ----------------------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nL 728 (3245)
T 3vkg_A 671 ----------------------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNL 728 (3245)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHH
Confidence 11222222111 0100 11123568888883 45799999
Q ss_pred hcCCeeeEEEEccCCCHHHHHHHHHHhhcccc-chhHHHHHHH
Q 041423 383 IRRGRMDKHIELSYCTFQGFKVLAKNYLNVET-HTLFETIQKL 424 (500)
Q Consensus 383 lr~GR~d~~I~~~~p~~~~~~~l~~~~l~~~~-~~l~~~i~~l 424 (500)
.. || +.|.|..|+.+...+|.-.-.|... ..+...+..+
T Consensus 729 k~--lF-r~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~ 768 (3245)
T 3vkg_A 729 KK--LF-RSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPL 768 (3245)
T ss_dssp HT--TE-EEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred Hh--hc-EEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 99 55 4499999999888877544333322 3344444443
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.36 E-value=5.3e-06 Score=84.50 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=95.9
Q ss_pred cccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCC--EEEEeecccCChHHHHH
Q 041423 211 TMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYD--VYDLELTAVKDNTELRK 288 (500)
Q Consensus 211 ~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~l~~~~~~~~l~~ 288 (500)
.+++......++.+.+..... ....+|++|++||||+.+++++....+.. ++.++|..+....--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 466776666666555543332 23469999999999999999999887554 99999999865544455
Q ss_pred HHHhh-----------------cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHH
Q 041423 289 LLIET-----------------TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGL 351 (500)
Q Consensus 289 l~~~~-----------------~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~l 351 (500)
+|+.. .....||||||+.+- ......|
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~------------------------------------~~~Q~~L 242 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELD------------------------------------QRVQAKL 242 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC------------------------------------HHHHHHH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCC------------------------------------HHHHHHH
Confidence 55322 346789999999852 1233456
Q ss_pred HHHHhhhh-hccCC------CeEEEEEcCCc-------CcccHHHhcCCeee-EEEEccCCCH--HHHHHHHHHhhc
Q 041423 352 LNFIDGLW-SACGG------ERLIVFTTNYV-------EKLDPALIRRGRMD-KHIELSYCTF--QGFKVLAKNYLN 411 (500)
Q Consensus 352 L~~ldg~~-~~~~~------~~ivI~TTN~~-------~~lD~aLlr~GR~d-~~I~~~~p~~--~~~~~l~~~~l~ 411 (500)
|..++.-. ...|+ .+-+|+|||.. ..+.+.|.. |+. ..|++|+... +....|+..|+.
T Consensus 243 l~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 243 LRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp HHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 66665211 01111 24577777742 122334444 332 3688887765 777788888874
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.24 E-value=1.4e-06 Score=90.41 Aligned_cols=139 Identities=16% Similarity=0.099 Sum_probs=80.3
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHH-HHHhCCCEEEEeecccCChHHHHHH-
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAM-ANLLNYDVYDLELTAVKDNTELRKL- 289 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~ai-A~~l~~~i~~l~l~~~~~~~~l~~l- 289 (500)
|.|++..|..|.-.+ ..+-.. ..-.-++||.|+||| ||++++++ ++.+...+|..... .+...|...
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHH---cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 678888777664332 111000 011115999999999 99999999 77765555432211 111111100
Q ss_pred -----H------HhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHh--
Q 041423 290 -----L------IETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFID-- 356 (500)
Q Consensus 290 -----~------~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ld-- 356 (500)
+ .......|+++|||+.+- ..+.+.|+..|+
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~------------------------------------~~~qsaLlEaMEe~ 327 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP------------------------------------EPHRWALMEAMDKG 327 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC------------------------------------HHHHHHHHHHHHHS
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC------------------------------------HHHHHHHHHHHhCC
Confidence 0 112347899999998741 234555666654
Q ss_pred -----hhhhccCCCeEEEEEcCCcC-----------cccHHHhcCCeeeEEE-EccCCCHHH
Q 041423 357 -----GLWSACGGERLIVFTTNYVE-----------KLDPALIRRGRMDKHI-ELSYCTFQG 401 (500)
Q Consensus 357 -----g~~~~~~~~~ivI~TTN~~~-----------~lD~aLlr~GR~d~~I-~~~~p~~~~ 401 (500)
|. .-+....||+|+|..+ .|.++++. |||+.+ .+++|+.+.
T Consensus 328 ~VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 328 TVTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred cEEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 22 1124578999999876 78899999 998855 457776543
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.16 E-value=3.1e-06 Score=101.38 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=70.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC---------------------ChHHHHHHHHh---
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK---------------------DNTELRKLLIE--- 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~---------------------~~~~l~~l~~~--- 292 (500)
|++.+++++||||||||||+|+.++|... |..+..++....- ....+...+..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47778889999999999999999998765 4556666555321 11222233322
Q ss_pred hcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCC-cchhcHhHHHHHHhhhhhccCCCeEEEEE
Q 041423 293 TTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEG-SSKVTLSGLLNFIDGLWSACGGERLIVFT 371 (500)
Q Consensus 293 ~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ls~lL~~ldg~~~~~~~~~ivI~T 371 (500)
...+++||||+++.+++....+. ..+++.. .....++.+|..|++.....+ ++|++
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g--------------------~~~~~~~~~~~R~lsqlL~~L~~~~~~~~---v~VI~ 1559 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEG--------------------EIGDSHMGLAARMMSQAMRKLAGNLKQSN---TLLIF 1559 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHS--------------------CTTCCCTTHHHHHHHHHHHHHHHHHHTTT---CEEEE
T ss_pred cCCCCEEEEcChhHhcccccccc--------------------cccccccchHHHHHHHHHHHHHHHHHhCC---cEEEE
Confidence 36799999999998653210000 0000111 134567889999998876543 56666
Q ss_pred cCCc
Q 041423 372 TNYV 375 (500)
Q Consensus 372 TN~~ 375 (500)
||..
T Consensus 1560 tNq~ 1563 (2050)
T 3cmu_A 1560 INQI 1563 (2050)
T ss_dssp EECE
T ss_pred Eccc
Confidence 6643
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.02 E-value=4.9e-05 Score=76.27 Aligned_cols=123 Identities=13% Similarity=0.112 Sum_probs=79.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHh---CC-CEEEEeecccCChHHHHHHHHhh------cCCeEEEecchhc-hhccc
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLL---NY-DVYDLELTAVKDNTELRKLLIET------TSKSIIVIEDIDC-SLDLT 311 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~-~i~~l~l~~~~~~~~l~~l~~~~------~~~~Il~iDdiD~-~~~~~ 311 (500)
....||||||+|+||++.+++++..+ +. +...+.+.. ..+++.++... ..+-|++|||+|. +-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 34589999999999999999998865 32 222333332 22344444332 2578999999976 31
Q ss_pred CcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCCCeEEEEEcCCc------CcccHHHhcC
Q 041423 312 GQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGGERLIVFTTNYV------EKLDPALIRR 385 (500)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~~~ivI~TTN~~------~~lD~aLlr~ 385 (500)
....+.|+..++.. +++.++|++|+.+ ..+-+++..+
T Consensus 91 ---------------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~sr 133 (343)
T 1jr3_D 91 ---------------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALANR 133 (343)
T ss_dssp ---------------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTTT
T ss_pred ---------------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHhC
Confidence 11344566666543 3445666666543 4577888886
Q ss_pred CeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 386 GRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 386 GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
|.+ +.+..++..+....++..+.
T Consensus 134 ~~~---~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 134 SVQ---VTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp CEE---EEECCCCTTHHHHHHHHHHH
T ss_pred ceE---EEeeCCCHHHHHHHHHHHHH
Confidence 665 99999998888877777653
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=0.00014 Score=67.48 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
|++.+.-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555556899999999999999999985566677776554
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.76 E-value=0.0002 Score=66.75 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=28.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
|++.+.-++|+||||+|||+|++.+|..+ +..+..++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34444558999999999999999999764 455655544
No 108
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.69 E-value=0.00051 Score=73.90 Aligned_cols=63 Identities=17% Similarity=0.063 Sum_probs=40.0
Q ss_pred CCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHH-------hCCCEEEEeec
Q 041423 206 PATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANL-------LNYDVYDLELT 278 (500)
Q Consensus 206 ~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~-------l~~~i~~l~l~ 278 (500)
|.....++|-+...++|.+.+. .. ....+-++++||+|+|||+||..+++. +...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~----~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLS----KL-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHT----TS-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHh----cc-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 3344567888777776655442 10 012346899999999999999988642 22235555554
Q ss_pred c
Q 041423 279 A 279 (500)
Q Consensus 279 ~ 279 (500)
.
T Consensus 189 ~ 189 (591)
T 1z6t_A 189 K 189 (591)
T ss_dssp S
T ss_pred C
Confidence 4
No 109
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.68 E-value=1.6e-05 Score=77.51 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=29.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
+.|.||+|+|||||+++|++.+.+.-..+.+...
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~ 70 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCE
Confidence 7899999999999999999999888777666543
No 110
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=0.00013 Score=68.79 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
|++...-++|+||||+|||+|+..+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4555556899999999999999999995
No 111
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00013 Score=69.09 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~ 266 (500)
|++...-++|.||||+|||||++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 444455589999999999999999993
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=3.3e-05 Score=71.24 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=27.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
...++|.|||||||||+++++|..++.+++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 3468999999999999999999999988765
No 113
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.54 E-value=3.6e-05 Score=69.77 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=28.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
++.++|.|||||||||+++.+|..++.++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999999999999988753
No 114
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.54 E-value=6.2e-05 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
.-++|.||||+||||+++++|..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 3588999999999999999999999888776653
No 115
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.54 E-value=0.00027 Score=71.29 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=30.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
|++...-++|+||||+|||+|+..+|..+ +..+..++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45555558999999999999999999875 55666665543
No 116
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.53 E-value=4.2e-05 Score=74.05 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=28.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 3789999999999999999999988766665543
No 117
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=8.1e-05 Score=66.27 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
-++|.|||||||||+++.+|..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999887644
No 118
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.51 E-value=6.5e-05 Score=75.95 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 3789999999999999999999988877665554
No 119
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.49 E-value=0.00051 Score=66.71 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
|++...-++|+||||+|||||+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444558999999999999999999755
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.49 E-value=0.00017 Score=71.92 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---------CCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---------NYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~l~~ 279 (500)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55655668999999999999999999875 44566666654
No 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=6.8e-05 Score=68.18 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCcccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 241 KAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++.+.-++|.||||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3344568899999999999999999999987665
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.45 E-value=0.00044 Score=69.69 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC---------------------ChHHHHHHHH---h
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK---------------------DNTELRKLLI---E 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~---------------------~~~~l~~l~~---~ 292 (500)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45555569999999999999999988654 4566666654321 1122222222 1
Q ss_pred hcCCeEEEecchhchh
Q 041423 293 TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 293 ~~~~~Il~iDdiD~~~ 308 (500)
...+.+||||++..++
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2358899999998864
No 123
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.44 E-value=7.9e-05 Score=71.86 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=28.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 789999999999999999999988777665544
No 124
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=9e-05 Score=66.22 Aligned_cols=30 Identities=47% Similarity=0.747 Sum_probs=26.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
..+.|.|||||||||+++.+|+.++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999976553
No 125
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.40 E-value=0.00015 Score=66.12 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 275 (500)
-++++||||+||||++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999986666543 5554443
No 126
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.39 E-value=2.4e-05 Score=79.63 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=28.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|||||||+++||+.+..+-..+.+..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 64 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 64 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEcCCCchHHHHHHHHHcCCCCCCeEEEECC
Confidence 789999999999999999999988877665543
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.39 E-value=0.00042 Score=69.62 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---------CCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---------NYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~l~~ 279 (500)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 55555558999999999999999999863 44566666554
No 128
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.37 E-value=0.0004 Score=70.02 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
|++...-+.|+||||+|||+|+..+|..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55555568999999999999999999987
No 129
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=7.2e-05 Score=72.12 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=29.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 3789999999999999999999988877665544
No 130
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.36 E-value=0.0014 Score=76.31 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=43.5
Q ss_pred cCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh-------CCCEEEEe
Q 041423 204 EHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL-------NYDVYDLE 276 (500)
Q Consensus 204 ~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~ 276 (500)
..|.....++|.++..++|.+.+...- ...+-+.|+|++|.|||+||+.+++.. ...++.++
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~ 186 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence 345556678898888777766553110 123458899999999999999988752 22355666
Q ss_pred ecc
Q 041423 277 LTA 279 (500)
Q Consensus 277 l~~ 279 (500)
++.
T Consensus 187 ~~~ 189 (1249)
T 3sfz_A 187 IGK 189 (1249)
T ss_dssp CCS
T ss_pred ECC
Confidence 654
No 131
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.36 E-value=2e-05 Score=79.58 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=28.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|||||||+++||+.+.++-..+.+..
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G 65 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEECCCCchHHHHHHHHhcCCCCCCcEEEECC
Confidence 789999999999999999999988866665543
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.34 E-value=0.00012 Score=65.80 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=26.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.|||||||||++++||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58899999999999999999999987764
No 133
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.34 E-value=0.00075 Score=68.14 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=47.3
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC---------------------ChHHHHHHHHh---
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK---------------------DNTELRKLLIE--- 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~---------------------~~~~l~~l~~~--- 292 (500)
|++..+-++|+||||+|||+|+..+|..+ +.++..++..... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56666669999999999999999988764 5677777764321 12233333322
Q ss_pred hcCCeEEEecchhchh
Q 041423 293 TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 293 ~~~~~Il~iDdiD~~~ 308 (500)
...+.+||||.+..+.
T Consensus 139 ~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 139 SGAVDVIVVDSVAALT 154 (356)
T ss_dssp HTCCSEEEEECGGGCC
T ss_pred ccCCCEEEEcCHHHhc
Confidence 2467899999998754
No 134
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.33 E-value=8.7e-05 Score=71.80 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=28.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3789999999999999999999988766665543
No 135
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.0001 Score=66.47 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++.++|.||||+||||+++.+|..++..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3468999999999999999999999987764
No 136
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.31 E-value=0.00083 Score=68.05 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=46.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC---------------------ChHHHHHHHHh---
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK---------------------DNTELRKLLIE--- 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~---------------------~~~~l~~l~~~--- 292 (500)
|++..+-++|+||||+|||+|+..+|..+ +.++..+++.... +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 55555668999999999999999888764 5677777655321 11233333322
Q ss_pred hcCCeEEEecchhchh
Q 041423 293 TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 293 ~~~~~Il~iDdiD~~~ 308 (500)
.....+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2357899999998864
No 137
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.30 E-value=0.00011 Score=66.44 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|+|||||||+++.+|..++.++++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48899999999999999999999998775
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.28 E-value=0.00014 Score=69.91 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=27.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-++|.|||||||||++++||..++.+++..+-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988776543
No 139
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00011 Score=66.81 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH-hCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL-LNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~-l~~~i~~ 274 (500)
..++|.|+|||||||+++.+|.. +++++++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 35899999999999999999999 7877664
No 140
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.27 E-value=0.00011 Score=69.36 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=28.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG 65 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 3789999999999999999999988777665544
No 141
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.26 E-value=5.2e-05 Score=76.68 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=28.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|||||||+++||+.+.++-..+.+..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 789999999999999999999988877665543
No 142
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.26 E-value=0.00019 Score=63.99 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=27.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.|+|||||||+++.+|..++.++++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999999876
No 143
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.25 E-value=5.9e-05 Score=76.65 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=28.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|||||||+++||+.+.+.-..+.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 3789999999999999999999988876665543
No 144
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.00033 Score=68.57 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
+.-++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3458899999999999999999988545555554
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00015 Score=65.97 Aligned_cols=34 Identities=38% Similarity=0.451 Sum_probs=26.4
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.+.-+.|.||||+||||+++.||+.++...+.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 3345889999999999999999998665544443
No 146
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.22 E-value=4.1e-05 Score=77.27 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=28.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|||||||+++||+.+.++-..+.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 76 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 3789999999999999999999988766665543
No 147
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.19 E-value=5.2e-05 Score=76.74 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=28.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|||||||+++||+.+.++-..+.+..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDE 64 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEECCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 789999999999999999999988766665543
No 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.18 E-value=0.00023 Score=63.46 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58899999999999999999999988765
No 149
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.00079 Score=80.99 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=50.3
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccCCh------------------------HHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVKDN------------------------TELRKLLIE 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~~~------------------------~~l~~l~~~ 292 (500)
|++.++.++|+||||||||+|+.+++.+. |.+...+++....+. ..+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 56777789999999999999999988643 677777776653211 122334445
Q ss_pred hcCCeEEEecchhchh
Q 041423 293 TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 293 ~~~~~Il~iDdiD~~~ 308 (500)
...+.+|+||++..+.
T Consensus 1157 ~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HTCCSEEEESCGGGCC
T ss_pred hCCCCEEEECCccccc
Confidence 5679999999999863
No 150
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.16 E-value=0.0015 Score=67.03 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=22.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4555555899999999999999977643
No 151
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00029 Score=64.78 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.||||+||||+++.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 468999999999999999999999877654
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.15 E-value=0.00024 Score=62.97 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=25.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|||||||||+++.+ ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 4789999999999999999 888988665
No 153
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00031 Score=64.51 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-++|.|||||||||+++.+|..++.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 488999999999999999999999887653
No 154
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.13 E-value=0.018 Score=61.43 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.8
Q ss_pred cCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHH
Q 041423 213 ALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 213 ~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+|-+..+++|.+.+..- +-...+.+.++|++|.|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 48888888887766321 111234688999999999999999997
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.12 E-value=0.00027 Score=64.06 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 358899999999999999999999977653
No 156
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.12 E-value=0.00026 Score=64.00 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=25.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|||||||||+++.+|..++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 47899999999999999999999876553
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.00028 Score=63.20 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.||||+||||+++.+++.+|..++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 48899999999999999999998765543
No 158
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00037 Score=66.81 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=28.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
+.-++|.||||+||||+++.++..++...+.++..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 34588999999999999999999998655555443
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.09 E-value=0.00033 Score=64.45 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.-+.|.||||+||||+++.|++.+|..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 35889999999999999999999975443
No 160
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.09 E-value=0.00035 Score=61.96 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=25.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.|+|||||||+++.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999988765
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.09 E-value=0.00026 Score=64.08 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=22.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-++|.|||||||||+++.+|..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987
No 162
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.08 E-value=3.7e-05 Score=77.67 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||+++||+.+.++-..+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 65 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 378999999999999999999988876665444
No 163
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.08 E-value=0.00073 Score=67.07 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.7
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
|++...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5555556899999999999999999875
No 164
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.07 E-value=0.00035 Score=64.93 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=26.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
++|.|||||||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999887653
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.06 E-value=0.00034 Score=63.61 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.|||||||||+++.+|..++.+++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458899999999999999999999987654
No 166
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.05 E-value=0.00047 Score=62.03 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=27.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (500)
-+.|.|++||||||+++.++..+ |.+++.++
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 47899999999999999999998 88887665
No 167
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.05 E-value=0.00024 Score=63.63 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHH-HhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN-LLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~-~l~~~ 271 (500)
.-++|.||||+||||+++.++. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 3588999999999999999998 45543
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.05 E-value=0.00038 Score=64.59 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=26.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
++|.|||||||||+++.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68899999999999999999999887653
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.04 E-value=0.00037 Score=63.01 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.|+|||||||+++.++..++.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 468899999999999999999999977654
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.00037 Score=65.01 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|||||||||+++.||..++.+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 58899999999999999999999987654
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.02 E-value=0.00036 Score=63.59 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=26.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.|||||||||+++.+|..++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458899999999999999999999976654
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00028 Score=63.50 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=22.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
-++|.|+|||||||+++.+|..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5889999999999999999999999876
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.00 E-value=0.00036 Score=65.52 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=26.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-++|.|||||||||+++.||..++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 458999999999999999999999877654
No 174
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00039 Score=64.91 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.|||||||||+++.||..++.+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 47899999999999999999999987665
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.97 E-value=0.00043 Score=64.91 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.6
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.++-++|.||||+||+|.++.||..++.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3456889999999999999999999987644
No 176
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00061 Score=61.71 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=27.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLE 276 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (500)
+.|.|+|||||||+++.++..+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999998 88887765
No 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.95 E-value=0.01 Score=67.31 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.3
Q ss_pred cCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHH------HhCCCEEEEeeccc
Q 041423 213 ALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMAN------LLNYDVYDLELTAV 280 (500)
Q Consensus 213 ~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~------~l~~~i~~l~l~~~ 280 (500)
+|.+...++|.+.+..- ...+-+.++||+|.|||+||+.+++ .+...++.++++..
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 67777777776655310 1134688999999999999999885 34545666666543
No 178
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.95 E-value=0.0029 Score=62.40 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh-----CCCEEEEeecccC---------------------ChHHH-HHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL-----NYDVYDLELTAVK---------------------DNTEL-RKLLIE 292 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~l~~~~---------------------~~~~l-~~l~~~ 292 (500)
|++.. -++++||||+|||+|+..++..+ +..+..++...-- +...+ ..+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45554 47899999999999977665443 4455556544321 11222 222222
Q ss_pred -----hcCCeEEEecchhchh
Q 041423 293 -----TTSKSIIVIEDIDCSL 308 (500)
Q Consensus 293 -----~~~~~Il~iDdiD~~~ 308 (500)
...+.+||||-|..+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 2358899999998864
No 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00051 Score=64.84 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=26.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++|.|+|||||||+++.||..++.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 58999999999999999999999977654
No 180
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00051 Score=64.12 Aligned_cols=29 Identities=38% Similarity=0.633 Sum_probs=26.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.|||||||||+++.+++.+++++++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 58899999999999999999999977654
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00053 Score=65.23 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.-++|.||||+||||+++.||..++....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 46899999999999999999999987644
No 182
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.92 E-value=0.005 Score=56.50 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=67.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecccC---ChH-----------------------------HHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAVK---DNT-----------------------------ELRKLL 290 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~~---~~~-----------------------------~l~~l~ 290 (500)
.+++|+++|.||||.|-++|-.. |..++.+....-. .+. .....+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47899999999999999988654 7888877543210 000 111111
Q ss_pred ----Hhh--cCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhccCC
Q 041423 291 ----IET--TSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSACGG 364 (500)
Q Consensus 291 ----~~~--~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~~~~ 364 (500)
... ...-+|++||+-..+.+ .-.....++..+. .+.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~---------------------------------g~l~~~ev~~~l~----~Rp~ 152 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAY---------------------------------DYLPLEEVISALN----ARPG 152 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHT---------------------------------TSSCHHHHHHHHH----TSCT
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccC---------------------------------CCCCHHHHHHHHH----hCcC
Confidence 111 23567888888653321 1234445666554 3456
Q ss_pred CeEEEEEcCCcCcccHHHhcCCeeeEEEEccC
Q 041423 365 ERLIVFTTNYVEKLDPALIRRGRMDKHIELSY 396 (500)
Q Consensus 365 ~~ivI~TTN~~~~lD~aLlr~GR~d~~I~~~~ 396 (500)
..-||+|+|.+ ++.|+. .-|.+-+|..
T Consensus 153 ~~~vIlTGr~a---p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 153 HQTVIITGRGC---HRDILD--LADTVSELRP 179 (196)
T ss_dssp TCEEEEECSSC---CHHHHH--HCSEEEECCC
T ss_pred CCEEEEECCCC---cHHHHH--hCcceeeecc
Confidence 78899999985 678887 7777777753
No 183
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.92 E-value=0.001 Score=61.88 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
|++...-+.|.||||+|||||++.|++.+-.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4555455899999999999999999996543
No 184
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.92 E-value=0.00052 Score=62.99 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-++|.|||||||||+++.+|..++.+++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 47899999999999999999999876654
No 185
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.91 E-value=0.00054 Score=63.71 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=24.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
++|.||||+||+|.++.||..++.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 678999999999999999999988754
No 186
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.89 E-value=0.00056 Score=63.58 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.|||||||||+++.||..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 7899999999999999999999987765
No 187
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.88 E-value=0.0021 Score=76.43 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH---hCCCEEEEeecccC---------------------ChHHHHHHHHhh--
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL---LNYDVYDLELTAVK---------------------DNTELRKLLIET-- 293 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~l~~~~---------------------~~~~l~~l~~~~-- 293 (500)
|++.++.++|+||||||||+|+.+++.. .+..++.++..... ....+..++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 6777778999999999999999998765 36677777665431 123334444333
Q ss_pred -cCCeEEEecchhchh
Q 041423 294 -TSKSIIVIEDIDCSL 308 (500)
Q Consensus 294 -~~~~Il~iDdiD~~~ 308 (500)
..+.+||||.+..++
T Consensus 110 ~~~~~LVVIDSLt~L~ 125 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALT 125 (1706)
T ss_dssp HTCCSEEEESCSTTCC
T ss_pred ccCCCEEEEcchhhhc
Confidence 568899999999865
No 188
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.86 E-value=0.00059 Score=62.32 Aligned_cols=27 Identities=33% Similarity=0.754 Sum_probs=24.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
+.|.|+|||||||+++.+|..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 689999999999999999999998654
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00044 Score=64.63 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.-++|.|||||||||+++.||..++..++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 45899999999999999999999997544
No 190
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.86 E-value=0.00056 Score=67.94 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=29.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
+.++|.||+|||||+++..+|..++..++.++-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988877753
No 191
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.86 E-value=0.0013 Score=60.91 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.|++.+. .....+....
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 477999999999999999999886 3455555443
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.85 E-value=0.00093 Score=61.37 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
.-+.|.|||||||||++++||+.++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999883
No 193
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.85 E-value=0.00061 Score=65.34 Aligned_cols=30 Identities=40% Similarity=0.605 Sum_probs=27.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
..+.|.||||+||||+++.||+.+++++++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 468999999999999999999999998776
No 194
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.85 E-value=0.00066 Score=63.68 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
++|.|||||||||+++.||..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 6899999999999999999999876544
No 195
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.00073 Score=64.34 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.-++|.||||+||||+++.|+..++.+.+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 34589999999999999999999998776653
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.83 E-value=0.0006 Score=62.79 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.|||||||||+++.+|+ +|.++++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 477999999999999999998 8888765
No 197
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.82 E-value=0.00088 Score=60.88 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=26.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
+.|.|||||||||+++.++..+ |.+++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999999 998876543
No 198
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00063 Score=62.50 Aligned_cols=29 Identities=34% Similarity=0.321 Sum_probs=25.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.|||||||||+++.+|+ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 378999999999999999999 88776654
No 199
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.80 E-value=0.00085 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||+|+|||||+++|++.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999998
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00083 Score=61.46 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=27.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh-CCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL-NYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~l 277 (500)
-+.|.|||||||||+++.++..+ +.+++.++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 47899999999999999999998 577776654
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.79 E-value=0.00055 Score=68.72 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 216 PEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 216 ~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
+.+.+.+++.+..++.. | ....++|.||||+||||++++||+.++.+++
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 44566666666555432 1 1235899999999999999999999988763
No 202
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.013 Score=55.04 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL---NYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 275 (500)
++++||||+||||++..++..+ +..++.+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 6788999999999988887765 5566655
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.76 E-value=0.0084 Score=67.59 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.1
Q ss_pred ccceeeeCCCCCcHHHHHHHHHH
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+.-++|.||+|+||||+++.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34588999999999999999885
No 204
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.74 E-value=0.00051 Score=62.10 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-++|.|||||||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.72 E-value=0.00098 Score=63.14 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=26.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.-+.|.|||||||||+++.||..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999987764
No 206
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.72 E-value=0.001 Score=60.96 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=27.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+||||||+++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 578999999999999999999999888763
No 207
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.69 E-value=0.0013 Score=60.34 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-++|.|||||||||+++.||..++..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 47899999999999999999998773
No 208
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.66 E-value=0.0028 Score=68.16 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----ChHHHHHHHHhhcC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK----DNTELRKLLIETTS 295 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~----~~~~l~~l~~~~~~ 295 (500)
-+.|.||+|+|||||++.+++.+.+.-..+.+.... +...+++.+...++
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 422 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECS
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeC
Confidence 488999999999999999999998887776655431 23344444444444
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.66 E-value=0.0011 Score=60.15 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-++|.||||+||||+++.|++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 210
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.65 E-value=0.0013 Score=63.32 Aligned_cols=31 Identities=42% Similarity=0.522 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH---hCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL---LNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~ 276 (500)
-++|.|+||+||||+++.++.. +|.+++.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5889999999999999999998 677776444
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0031 Score=57.94 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
-+.|.||+|+||||+++.+++.+ +.++..++...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 47899999999999999999986 56666655443
No 212
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.64 E-value=0.0094 Score=66.38 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
+-++|.||+|+||||+++.+++.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45889999999999999999975
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.63 E-value=0.00082 Score=61.74 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=26.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.|++||||||+++.++..+|.++++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 367999999999999999999999887663
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.001 Score=60.08 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+-+.|.||+|+|||||++.|++.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999875
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.57 E-value=0.0013 Score=62.89 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.||+||||||+++.||..||+.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 47899999999999999999999987664
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.0013 Score=60.66 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.3
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
..++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4455688999999999999999999885
No 217
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.56 E-value=0.0011 Score=62.05 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
.-+.|.||+|+|||||++.|++.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999999987
No 218
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.56 E-value=0.00068 Score=62.47 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.-++|.|+|||||||+++.++..++...+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999998765433
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.53 E-value=0.0012 Score=60.63 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.7
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999999774
No 220
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.50 E-value=0.0014 Score=60.04 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
.-+.|.||+|+|||||++.|++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999863
No 221
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.48 E-value=0.0019 Score=69.36 Aligned_cols=34 Identities=44% Similarity=0.455 Sum_probs=26.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+.+++.||||||||+++.+++..+ +..+..+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 468899999999999999998865 5666655433
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.48 E-value=0.0012 Score=60.38 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-+.|.||||+||||+++.|++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34789999999999999999998743
No 223
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.015 Score=54.55 Aligned_cols=49 Identities=27% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHH----hCCCEEEEeecccCChHHHHHHH
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANL----LNYDVYDLELTAVKDNTELRKLL 290 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~l~~~~~~~~l~~l~ 290 (500)
|++.+.-++++|+||+|||+++..+|.. .+.+++.+++.. +...+...+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 4555555899999999999999876643 366777766553 344444333
No 224
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.47 E-value=0.0017 Score=59.94 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||++.|++.++..+..++.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47899999999999999999998843444433
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0019 Score=63.73 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHhhChHHHHhhCC--CcccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 217 EKKLEIIEDLVTFSKSRDFYARIGK--AWKRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 217 ~~k~~l~~~l~~~~~~~~~~~~~g~--~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
..++.+.+.+...+........+.+ ..+.-+.|.||+|+||||+++.||+.+.
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4555666666666644210012222 2333478999999999999999999874
No 226
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.45 E-value=0.0055 Score=72.18 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.5
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
++.-+.|+||+|+|||||++.|.+++.+.-..+.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 3344889999999999999999999988877665544
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.45 E-value=0.0014 Score=59.36 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+-+.|.||+|+|||||++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999875
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0028 Score=63.96 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhhChHHHHhhCCC--cccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 217 EKKLEIIEDLVTFSKSRDFYARIGKA--WKRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 217 ~~k~~l~~~l~~~~~~~~~~~~~g~~--~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
..++.+.+.+...+........+.+. .+.-++|.||+|+||||+++.||+.+.
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 34555555555555432211122222 333488999999999999999999873
No 229
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.43 E-value=0.0032 Score=65.67 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=38.6
Q ss_pred cccCCCccccccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CC-CEEEEee
Q 041423 202 VFEHPATFETMALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NY-DVYDLEL 277 (500)
Q Consensus 202 ~~~~~~~~~~l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~-~i~~l~l 277 (500)
+-..|.+|++| .+++++.+ ..+..++.. ..+.++|.||||||||+++.+++..+ +. .++.+..
T Consensus 16 ~~~~p~~~~~L--n~~Q~~av-~~~~~~i~~----------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 16 PRGSHMTFDDL--TEGQKNAF-NIVMKAIKE----------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp -----CCSSCC--CHHHHHHH-HHHHHHHHS----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCCCccccC--CHHHHHHH-HHHHHHHhc----------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 44556777776 34555444 444444433 12268999999999999999999877 33 4555443
Q ss_pred c
Q 041423 278 T 278 (500)
Q Consensus 278 ~ 278 (500)
+
T Consensus 83 T 83 (459)
T 3upu_A 83 T 83 (459)
T ss_dssp S
T ss_pred c
Confidence 3
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.43 E-value=0.0018 Score=59.96 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-+.|.||+|+||||+++.|+..+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34789999999999999999998864
No 231
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.42 E-value=0.0047 Score=67.33 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=34.1
Q ss_pred ccCChhhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 212 MALEPEKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 212 l~~~~~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
-.+++.+++.+...+. . +.-.|++||||||||+++..+...+ +..+..+..+.
T Consensus 188 ~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp TTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 3467888877754432 1 1136899999999998766555433 55666655544
No 232
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=96.41 E-value=0.0017 Score=50.33 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=49.0
Q ss_pred cCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041423 395 SYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEE 474 (500)
Q Consensus 395 ~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 474 (500)
|.|+.++|.+|++.++...... .++....|++.+.++++++....|.++.+.++++.......++.+.+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-----------~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~A 69 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-----------RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMA 69 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-----------TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-----------CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 6899999999999998754321 13344455555555555555566777888888776555556666666
Q ss_pred HHHHH
Q 041423 475 RKQAE 479 (500)
Q Consensus 475 ~~~~~ 479 (500)
+++..
T Consensus 70 l~~v~ 74 (78)
T 3kw6_A 70 VAKVM 74 (78)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 233
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.41 E-value=0.017 Score=65.33 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
+-++|.||+|+||||+++.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999954
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0031 Score=56.93 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
.-++|.|+||+||||+++.+|..++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999874
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.38 E-value=0.0018 Score=61.43 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=29.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN 66 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence 4889999999999999999999988877776654
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.37 E-value=0.0021 Score=61.16 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=29.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 59 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 45789999999999999999999988766665543
No 237
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0023 Score=60.30 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.|||||||||+++.+|..+|.++++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999987765
No 238
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.37 E-value=0.002 Score=63.57 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=26.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
.++.+.-+.|+||+|+|||||++.|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 445555589999999999999999999984333
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.36 E-value=0.0018 Score=59.86 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
.-+.|.||+|+|||||+++|++.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999884
No 240
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.36 E-value=0.0022 Score=59.48 Aligned_cols=29 Identities=41% Similarity=0.478 Sum_probs=25.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.|++||||||+++.++. +|.+++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 578999999999999999998 88776653
No 241
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.35 E-value=0.0019 Score=58.84 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=25.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.|++||||||+++.+|.. |.+++..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 4789999999999999999998 8777653
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.35 E-value=0.001 Score=61.37 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=22.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-++|.|+|||||||+++.++..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34789999999999999999998753
No 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.34 E-value=0.0026 Score=60.72 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.-+.|.|||||||||+++.|+..++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 358899999999999999999999876
No 244
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.33 E-value=0.0091 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
.+++.|++|+|||||+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.31 E-value=0.013 Score=57.54 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=28.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTA 279 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~ 279 (500)
++-++|.||+|+||||++..||..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3458899999999999999999876 44666666544
No 246
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.31 E-value=0.0027 Score=58.89 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.|+|||||||+++.+|..+|.+++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 588999999999999999999999887653
No 247
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0029 Score=59.44 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
|++.+.-++|+||||+|||+|+..+|..+ +..+..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45555568999999999999988777643 55666666543
No 248
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.27 E-value=0.0022 Score=60.89 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.|.||+|+||||+++.|++.+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 6799999999999999999988754
No 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.25 E-value=0.0022 Score=59.95 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 4789999999999999999999887766665543
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.25 E-value=0.0029 Score=58.49 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=25.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN----YDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~ 276 (500)
.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3578999999999999999999875 4455544
No 251
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.24 E-value=0.04 Score=57.98 Aligned_cols=41 Identities=7% Similarity=0.080 Sum_probs=33.7
Q ss_pred CeEEEEEcCCcC--cccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 365 ERLIVFTTNYVE--KLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 365 ~~ivI~TTN~~~--~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
++-+|++|.++. .++..+.. .+...|.|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 578889999887 58887777 788889999999888887764
No 252
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.24 E-value=0.0076 Score=66.78 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+.-++|.||+|+||||+++.+|+..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3458899999999999999999853
No 253
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.22 E-value=0.0018 Score=59.68 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh-CCCE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL-NYDV 272 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l-~~~i 272 (500)
-+.|.||||+||||+++.+++.+ +..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 37799999999999999999987 4433
No 254
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.012 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 255
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.20 E-value=0.057 Score=57.45 Aligned_cols=43 Identities=5% Similarity=0.072 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCcC--cccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 363 GGERLIVFTTNYVE--KLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 363 ~~~~ivI~TTN~~~--~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
.-++-+|++|.++. .|+..++. -+...|.|...+..+-+.++.
T Consensus 376 a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 376 AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 34688999999987 78888877 788889999999888777763
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.18 E-value=0.0016 Score=64.90 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-++|.||+|||||+|+..||..++..++..|--
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 588999999999999999999999877765543
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.16 E-value=0.0026 Score=59.55 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=24.1
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+.+.-+.|.||+|+|||||+++|++.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34445889999999999999999998864
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.16 E-value=0.0032 Score=60.66 Aligned_cols=27 Identities=44% Similarity=0.627 Sum_probs=23.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
..-++|.||+|+||||+++++++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 334889999999999999999998743
No 259
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.15 E-value=0.031 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|+||+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.14 E-value=0.0021 Score=61.50 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=28.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||+++|++.+... ..+.+..
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g 60 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG 60 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC
Confidence 7899999999999999999999888 8776654
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.14 E-value=0.003 Score=66.11 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-++|.||+|+|||||++.||+.+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhh
Confidence 378999999999999999999874
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.13 E-value=0.0026 Score=59.99 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 47899999999999999999998776555443
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.13 E-value=0.0099 Score=55.77 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
.+++.|+||+|||+++-.+|..+ |.++..+++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 48899999999999999998875 77777666643
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.10 E-value=0.0032 Score=56.28 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.4
Q ss_pred ceeeeCCCCCcHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAA 263 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~a 263 (500)
-+.|.||||+|||||+++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999994
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.10 E-value=0.0046 Score=63.71 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=36.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHh-hcCCeEEEecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIE-TTSKSIIVIED 303 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~-~~~~~Il~iDd 303 (500)
.-++|.||||+||||+++.++..+++.++ +...+..-..+...... ......+++|.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTLGSWQRCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGSCSHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchHHHHHHHHHHHHHHHhcCCcEEEeC
Confidence 44789999999999999999999876544 44444444344333322 22333344554
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.09 E-value=0.011 Score=59.80 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (500)
++|.||||||||+|++.||+..
T Consensus 177 ~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 177 GLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHH
Confidence 8999999999999999999865
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.09 E-value=0.0027 Score=60.30 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 789999999999999999999988877766554
No 268
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.08 E-value=0.016 Score=50.31 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.07 E-value=0.0031 Score=61.08 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.|++.+.+.-..+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g 80 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 3889999999999999999999988877665544
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.07 E-value=0.0021 Score=60.93 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=25.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4889999999999999999998865544443
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.06 E-value=0.032 Score=55.06 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=29.8
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|++...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 55555568999999999999999998654 3456666654
No 272
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.06 E-value=0.003 Score=62.15 Aligned_cols=33 Identities=18% Similarity=0.543 Sum_probs=27.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
++-++|.||+|+|||+|+..+|..++..++..|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 345789999999999999999999987766543
No 273
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.05 E-value=0.0027 Score=63.38 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=26.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.-++|.||+|+|||+++..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 35789999999999999999999986555443
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.04 E-value=0.0032 Score=57.60 Aligned_cols=23 Identities=43% Similarity=0.819 Sum_probs=21.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||+|+|||||++.|++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.04 E-value=0.0046 Score=56.38 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=23.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
|-++|.||+|+|||||++.|.....-.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4589999999999999999988764443
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.04 E-value=0.0029 Score=60.37 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=29.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 3789999999999999999999988877665544
No 277
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.03 E-value=0.0052 Score=60.97 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEeeccc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY-----DVYDLELTAV 280 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~l~~~ 280 (500)
-+.|.||+||||||+++.|++.++. .+..+.....
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4779999999999999999998863 3444554443
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.03 E-value=0.007 Score=59.65 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 218 KKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 218 ~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
.++.+.+.+...+.....+ ......+.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 5555566666655432100 1112233458899999999999999999977 4556655554
No 279
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.03 E-value=0.0022 Score=50.81 Aligned_cols=76 Identities=16% Similarity=0.027 Sum_probs=51.3
Q ss_pred EccCCCHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041423 393 ELSYCTFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAE 472 (500)
Q Consensus 393 ~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 472 (500)
+-++|+.++|.+|++.++...... .++...+|++.+.++|++|...+|.++.+.++++.......++.+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-----------~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~ 75 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-----------RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFE 75 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-----------TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-----------cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346899999999999999754321 133445555555566666666678888888888765555566666
Q ss_pred HHHHHHH
Q 041423 473 EERKQAE 479 (500)
Q Consensus 473 ~~~~~~~ 479 (500)
.+++...
T Consensus 76 ~Al~~v~ 82 (86)
T 2krk_A 76 MAVAKVM 82 (86)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6666553
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.02 E-value=0.006 Score=71.88 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=37.8
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc--C--ChHHHHHHHHhhcCCeEE
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV--K--DNTELRKLLIETTSKSII 299 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~--~--~~~~l~~l~~~~~~~~Il 299 (500)
++.-+.|+||+|+|||||++.|.+.+.+.-..|.+.+. . +...+|+.+.-.++...|
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L 1164 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL 1164 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe
Confidence 33348899999999999999999988776444433332 1 344555555555554444
No 281
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.02 E-value=0.016 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 282
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.02 E-value=0.002 Score=59.24 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.4
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
.++++|.||+|+|||+|+..++...+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 35799999999999999999998876 5443
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.01 E-value=0.0031 Score=61.34 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=28.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 789999999999999999999988877766554
No 284
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.01 E-value=0.003 Score=61.62 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-CCCEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL-NYDVY 273 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-~~~i~ 273 (500)
.-++|.||||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358899999999999999999964 65444
No 285
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.00 E-value=0.0062 Score=61.17 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 241 KAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 241 ~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
++..+| +.|.||+|+|||||++.|++.+..+...+.+
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 444555 8899999999999999999999888765544
No 286
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.99 E-value=0.0036 Score=60.44 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=29.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.+.-..+.+..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g 68 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 3789999999999999999999988777666554
No 287
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.99 E-value=0.019 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 288
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.98 E-value=0.017 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
.++|.|+||+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999888754
No 289
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.97 E-value=0.027 Score=58.25 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=59.9
Q ss_pred HHHHhhcCCeEEEecchhchhcccCcchhhhcccchHHHhhhhhhhhccCCCCCCcchhcHhHHHHHHhhhhhc------
Q 041423 288 KLLIETTSKSIIVIEDIDCSLDLTGQRKKKAEKSSDDEKEKLDKEISRKEPKEEGSSKVTLSGLLNFIDGLWSA------ 361 (500)
Q Consensus 288 ~l~~~~~~~~Il~iDdiD~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~lL~~ldg~~~~------ 361 (500)
..+..+...+|+++||||.+....+.. . ......-....||..+|+-...
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~--~----------------------~D~s~egvq~aLL~~le~~~~~~~~~~~ 298 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYS--G----------------------ADVSREGVQRDLLPLVEGSTVSTKHGMV 298 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCS--S----------------------SHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCC--C----------------------CCchHHHHHHHHHHHhccccccccccee
Confidence 334444467899999999975311100 0 0001111334678888863211
Q ss_pred cCCCeEEEEEc----CCcCcccHHHhcCCeeeEEEEccCCCHHHHHHHHH
Q 041423 362 CGGERLIVFTT----NYVEKLDPALIRRGRMDKHIELSYCTFQGFKVLAK 407 (500)
Q Consensus 362 ~~~~~ivI~TT----N~~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~ 407 (500)
...++++|+|. +.+..+-|.|+. ||+.+|+|+.++.+++..|+.
T Consensus 299 d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 299 KTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp ECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred cCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 23567888886 244445588987 999999999999999999983
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.97 E-value=0.0034 Score=61.24 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=29.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~ 278 (500)
|++...-++|.||||+|||||++.+|..+ |.++..++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 45555558999999999999999999876 3356555543
No 291
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.95 E-value=0.0038 Score=57.61 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.||+|||||++++.+|..||+++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 47899999999999999999999999884
No 292
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.94 E-value=0.0023 Score=60.13 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=14.8
Q ss_pred ceeeeCCCCCcHHHHHHHHH-HHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMA-NLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA-~~l~ 269 (500)
-+.|.||+|+||||+++.|+ +.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 37899999999999999999 8764
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.0069 Score=62.54 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.8
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
++-+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4458899999999999999999877 66666666543
No 294
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.90 E-value=0.0045 Score=62.73 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=27.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|||||||+++||+.+.++-..+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEEC
Confidence 378999999999999999999988776655443
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.90 E-value=0.009 Score=59.46 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=22.7
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+.-+.|.||+|+||||+++.||+.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999873
No 296
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.89 E-value=0.0041 Score=60.49 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.|.|+|||||||+++.++ .+|.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 47899999999999999999 67876654
No 297
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.89 E-value=0.025 Score=64.65 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.5
Q ss_pred cceeeeCCCCCcHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAM 264 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~ai 264 (500)
+-++|.||+|+||||+++.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 45889999999999999998
No 298
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.89 E-value=0.0048 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+-+.|.||+|+|||||+++|++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998865
No 299
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.88 E-value=0.008 Score=62.32 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=31.0
Q ss_pred CCcccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 241 KAWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 241 ~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
++.++| +.|.||+|||||||++.||+....+...+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~ 191 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI 191 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence 455556 78999999999999999999998886655443
No 300
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.88 E-value=0.024 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 301
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.88 E-value=0.055 Score=56.18 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
..+|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38899999999999999998765
No 302
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.87 E-value=0.0094 Score=61.37 Aligned_cols=25 Identities=44% Similarity=0.562 Sum_probs=22.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+++.||+|+|||||+++|++.+..+
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCC
Confidence 7899999999999999999998653
No 303
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.85 E-value=0.004 Score=62.52 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=28.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|||||||+++||+...++-..+.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g 61 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECC
Confidence 3789999999999999999999988766665543
No 304
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.84 E-value=0.0024 Score=63.01 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=37.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----ChHHHHHHHHhhcCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK----DNTELRKLLIETTSK 296 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~----~~~~l~~l~~~~~~~ 296 (500)
.-+.|.||+|+|||||++.|++.+.+.-..|.+.... ....+++.+...++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 3488999999999999999999998887766555431 234455544444543
No 305
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.83 E-value=0.02 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 306
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.82 E-value=0.017 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.82 E-value=0.0028 Score=61.27 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+...-..+.+..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3789999999999999999999877755554443
No 308
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.81 E-value=0.0053 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=25.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
+-|.||||+||||+++.||..++.+.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 6789999999999999999999987654
No 309
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.79 E-value=0.014 Score=53.49 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=24.9
Q ss_pred ceeeeCCCCCcHH-HHHHHHHHHh--CCCEEEEe
Q 041423 246 GYLLYGPPGTGKS-TMIAAMANLL--NYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKT-sla~aiA~~l--~~~i~~l~ 276 (500)
=+++|||+|+||| .|++++.++. +..++.+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3789999999999 8999988865 56666664
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.79 E-value=0.0055 Score=62.13 Aligned_cols=28 Identities=43% Similarity=0.577 Sum_probs=23.7
Q ss_pred CcccceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 242 AWKRGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
..+..++|.||+|+||||++++|++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3344589999999999999999999874
No 311
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.78 E-value=0.0027 Score=60.38 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=25.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+|+|||||+++|++.+.+.-..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 488999999999999999999887653333
No 312
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.76 E-value=0.004 Score=61.38 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
-+++.||+|+|||+|+..+|..++..++..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 4788999999999999999999886665443
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.73 E-value=0.0041 Score=59.59 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+|+|||||+++|++.+.+.-..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 378999999999999999999987765544
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.73 E-value=0.0052 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.+|+||+|+||||++.||+..++.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 579999999999999999998864
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.73 E-value=0.0051 Score=59.29 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=27.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++.+ +.-..+.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 47899999999999999999998 776666544
No 316
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.72 E-value=0.023 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
-.++|.|++|+|||||+.++.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999987
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.71 E-value=0.0046 Score=65.41 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.++++.||+|+||||+++++++.+..+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 3469999999999999999999988654
No 318
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.70 E-value=0.005 Score=62.07 Aligned_cols=24 Identities=54% Similarity=0.769 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+++.||+|+|||||++++++.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 478999999999999999999874
No 319
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.70 E-value=0.0026 Score=58.51 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+.|.||+|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999999854
No 320
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.70 E-value=0.0067 Score=59.35 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-+.|.||+|+|||||++.|+..++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34789999999999999999998864
No 321
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0093 Score=61.66 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 217 EKKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 217 ~~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
..++.+.+.+...+.......... ..+.-+++.||||+||||++..+|..+ |..+..+++..
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345556666666655311110010 124568899999999999999999877 56666666543
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.011 Score=54.40 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
..++|.|++|+|||||+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999854
No 323
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.66 E-value=0.0069 Score=57.01 Aligned_cols=29 Identities=38% Similarity=0.522 Sum_probs=24.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC--CCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN--YDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~--~~i~~ 274 (500)
-+.|.||||+||||+++.|+..++ .+++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 367889999999999999999997 45543
No 324
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.022 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
.++|.|++|+|||||+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.57 E-value=0.011 Score=58.49 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=28.6
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTA 279 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~ 279 (500)
++-+++.||+|+||||++..||..+ +..+..+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3458899999999999999999876 55666666543
No 326
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.56 E-value=0.0063 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-+.|.||+|+||||+++.||+.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 34789999999999999999998854
No 327
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.55 E-value=0.0045 Score=57.46 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-+.|.||+|+|||||+++|++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999997
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.52 E-value=0.0069 Score=58.21 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=26.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||+++|++.+.. -..+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g 80 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGG 80 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECC
Confidence 4889999999999999999998863 55565543
No 329
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.027 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 330
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.51 E-value=0.0059 Score=59.08 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVY 273 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (500)
.+.|.||+|+|||||+++|++...+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4789999999999999999998866543
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.50 E-value=0.0099 Score=58.52 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC--C---CEEEEeecccC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN--Y---DVYDLELTAVK 281 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~--~---~i~~l~l~~~~ 281 (500)
-+.|.||+|+|||||++.|++.++ . .+..+++....
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 377999999999999999999887 3 25555555543
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.50 E-value=0.0063 Score=61.44 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
.-+.|.||+|||||||++.|++.+..+-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4588999999999999999999987653
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.50 E-value=0.051 Score=60.40 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999987777554
No 334
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.031 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 335
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.49 E-value=0.0052 Score=58.74 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=25.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH--hCCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL--LNYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~--l~~~i~~l~l~ 278 (500)
-+.|.||+|+|||||+++|++. +.+.-..+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 3789999999999999999997 44444444443
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.49 E-value=0.042 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999873
No 337
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.48 E-value=0.025 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
-.+++.|++|+|||||+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 338
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.47 E-value=0.025 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHH
Q 041423 247 YLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (500)
+++.|++|+|||||+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.45 E-value=0.0081 Score=59.38 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-+.|.||+|+|||||++.|++.+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 3779999999999999999998854
No 340
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.45 E-value=0.0091 Score=56.42 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
.++++||+|+|||.++.+++..++..++.+-
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4899999999999999999888877766553
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.45 E-value=0.023 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.014 Score=52.31 Aligned_cols=26 Identities=15% Similarity=0.505 Sum_probs=22.1
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
....+++.|++|+|||||+.++.+.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998753
No 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.41 E-value=0.0054 Score=59.98 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=24.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.|.||+|+|||||+++|++.+.+.-..+
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 88999999999999999999886554444
No 344
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.41 E-value=0.018 Score=49.79 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999873
No 345
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.40 E-value=0.011 Score=63.85 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=28.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (500)
.-++|.|+||+||||++++++..| +.+++.++
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 347899999999999999999999 99988875
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.40 E-value=0.034 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.38 E-value=0.011 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=27.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+.+++.||||+||||++..+|..+ |..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 468899999999999999999976 4666666554
No 348
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.35 E-value=0.0067 Score=61.84 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=26.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
.-++|.||+|+|||+|+..+|..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 3578999999999999999999998766543
No 349
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.34 E-value=0.059 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 350
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.33 E-value=0.046 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.++|.|++|+|||||+..+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 589999999999999999976
No 351
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.31 E-value=0.021 Score=56.96 Aligned_cols=30 Identities=43% Similarity=0.519 Sum_probs=24.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 275 (500)
-+.|.||||+|||||++++++.+ +..+..+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 37899999999999999999876 4444433
No 352
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.29 E-value=0.01 Score=53.45 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=26.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
.-+.|.||+|+|||||+..++..+ +..+..+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 468899999999999999999875 455555544
No 353
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.041 Score=49.46 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=19.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999874
No 354
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.02 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999986
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.28 E-value=0.0071 Score=58.38 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=25.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC--CCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN--YDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~l~ 278 (500)
-+.|.||+|+|||||++.|++.+. +.-..+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 378999999999999999999742 333444443
No 356
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.27 E-value=0.042 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..++|.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 357
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.24 E-value=0.025 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
.+++.|++|+|||||+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 358
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.23 E-value=0.04 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999985
No 359
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.21 E-value=0.016 Score=52.44 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=28.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeeccc
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAV 280 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~ 280 (500)
+|++|++|+|||++|..+|.. +.+.+.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 878777766543
No 360
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.031 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.20 E-value=0.025 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35899999999999999999863
No 362
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.20 E-value=0.0094 Score=55.94 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (500)
-+.+.|++|||||++++.+|..+|+++++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47889999999999999999999999875
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.17 E-value=0.0058 Score=61.70 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=25.0
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHhCCCE
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLLNYDV 272 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (500)
+..++|.||+|+|||||+++|++.+...-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 34689999999999999999999887653
No 364
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.16 E-value=0.039 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 365
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.14 E-value=0.041 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
-++|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 389999999999999998875
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.048 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.0065 Score=54.59 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=26.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC---EEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD---VYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~l~~ 279 (500)
.+.|.||+|+|||||++.|++.+... ...+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 57899999999999999999998654 65555443
No 368
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.08 E-value=0.062 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.06 E-value=0.022 Score=51.02 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
-+.+.|++|+||||++..++..+ ++.+..+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 57899999999999999999876 4666666543
No 370
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.04 E-value=0.0097 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHH
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+|+||.||+|+||||++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999998873
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.04 E-value=0.0075 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=24.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
..+++.||+|+|||||+++|++.+..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 468999999999999999999988665
No 372
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.02 E-value=0.084 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
-.+++.|++|+|||||+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 373
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.02 E-value=0.0079 Score=58.78 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC---CCEEEEeecccC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN---YDVYDLELTAVK 281 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~l~~~~ 281 (500)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 477999999999999999999776 456666766654
No 374
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.01 E-value=0.0098 Score=60.63 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|||||||+++||+.+. +-..+.+..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G 81 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDG 81 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESS
T ss_pred EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECC
Confidence 388999999999999999999876 555555544
No 375
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.01 E-value=0.0057 Score=57.60 Aligned_cols=25 Identities=44% Similarity=0.470 Sum_probs=22.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.|.||+|+|||||+++|+..+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 4688999999999999999998654
No 376
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.98 E-value=0.012 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-++|.||+|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 377
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.94 E-value=0.043 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 378
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.93 E-value=0.011 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 379
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.87 E-value=0.01 Score=51.63 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|+||+|||||+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 380
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.86 E-value=0.015 Score=61.63 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=25.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLE 276 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (500)
.-++|.|+||+||||+++.+|..+ +.+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 358899999999999999999988 44444444
No 381
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.85 E-value=0.025 Score=58.83 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~ 278 (500)
|++.+.-++|.||||+|||+|+..+|..+ +.++..+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45555558999999999999999988754 4577776654
No 382
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.82 E-value=0.03 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.78 E-value=0.015 Score=50.74 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (500)
.+|+||+|+|||+++.||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999998765
No 384
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.77 E-value=0.04 Score=56.74 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhChHHHHhhCCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 218 KKLEIIEDLVTFSKSRDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 218 ~k~~l~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
..+.+.+.+...+.... ..+....++.+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 74 ~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 74 ILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 44455555655554321 12222233457888999999999999999987 4556666654
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.77 E-value=0.016 Score=61.39 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCcccceeeeCCCCCcHHHHHHH--HHHHhC--CCEEEEeec
Q 041423 241 KAWKRGYLLYGPPGTGKSTMIAA--MANLLN--YDVYDLELT 278 (500)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~a--iA~~l~--~~i~~l~l~ 278 (500)
++...-++|.||||||||||++. +++.+. ...+.++..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 44445589999999999999999 567664 334444443
No 386
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.76 E-value=0.037 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 387
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.75 E-value=0.059 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 388
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.70 E-value=0.032 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.70 E-value=0.026 Score=59.38 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
++.++|.|+||+||||++..||..+ |..+..+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3468899999999999999999876 6777777664
No 390
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.66 E-value=0.043 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=22.7
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHh
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (500)
|..+| .++.||||||||+|+..||+..
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 44455 8999999999999999999864
No 391
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.65 E-value=0.032 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 392
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.05 Score=48.78 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=19.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999987
No 393
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.61 E-value=0.024 Score=55.51 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhhChHHHHh-hCCCc-ccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeeccc
Q 041423 218 KKLEIIEDLVTFSKSRDFYAR-IGKAW-KRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELTAV 280 (500)
Q Consensus 218 ~k~~l~~~l~~~~~~~~~~~~-~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~~~ 280 (500)
.++.+.+.+...+.... .. +.... +.-+++.||+|+||||++..+|..+ +..+..+++...
T Consensus 72 ~~~~~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 72 FIKIVYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45556666666665321 11 11111 3447788999999999999999877 667777766543
No 394
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.55 E-value=0.14 Score=53.32 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=45.2
Q ss_pred Ccccc--eeeeCCCCCcHHHH-HHHHHHHhCCCEEEEeecccCChHHHHHHHHhh-----cCCeEEEecchhc
Q 041423 242 AWKRG--YLLYGPPGTGKSTM-IAAMANLLNYDVYDLELTAVKDNTELRKLLIET-----TSKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~-----~~~~Il~iDdiD~ 306 (500)
|..+| .++.|++|||||+| +..|++..+.+++.+-+.--+...++..+.... -.++++|.--.|.
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 230 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASE 230 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTS
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCC
Confidence 45555 89999999999999 679999998887655444444455555444333 2578888766654
No 395
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.54 E-value=0.026 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=9.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
..+++.|++|+|||||+.++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999875
No 396
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.51 E-value=0.017 Score=62.55 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=24.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~ 278 (500)
.+++.||||||||+++..++..+ +..+..+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999988777654 3345554443
No 397
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.50 E-value=0.015 Score=62.50 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-+.|.||+|+|||||++.+++.+.+.-..+.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 34889999999999999999999877655554433
No 398
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.48 E-value=0.017 Score=53.61 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=27.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l 277 (500)
.+.|.|..||||||+++.++. +|.++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 478999999999999999998 9999887554
No 399
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.46 E-value=0.02 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 400
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.46 E-value=0.033 Score=57.57 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=29.9
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecc
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTA 279 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~ 279 (500)
++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4568889999999999999999776 67777777764
No 401
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.46 E-value=0.031 Score=57.95 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~ 278 (500)
|++...-++|.|+||+|||+++..+|... +.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45555558999999999999999888753 4567766654
No 402
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.46 E-value=0.13 Score=53.64 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=45.9
Q ss_pred Ccccc--eeeeCCCCCcHHHH-HHHHHHHhCCCEEEEeecccCChHHHHHHHHhhc-----CCeEEEecchhc
Q 041423 242 AWKRG--YLLYGPPGTGKSTM-IAAMANLLNYDVYDLELTAVKDNTELRKLLIETT-----SKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~-----~~~Il~iDdiD~ 306 (500)
|..+| .++.|++|||||+| +..|++..+.+++.+-+.--+...++..+..... .++++|.--.|.
T Consensus 159 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~ 231 (507)
T 1fx0_A 159 PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADS 231 (507)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTS
T ss_pred ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCC
Confidence 44555 89999999999999 6799999888865554444445556665554443 467888766654
No 403
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.46 E-value=0.023 Score=60.92 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=27.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN----YDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~ 276 (500)
-++|.|+||+||||++++++..|+ .+++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 378899999999999999999986 6777766
No 404
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.44 E-value=0.014 Score=63.04 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=39.1
Q ss_pred cccceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----ChHHHHHHHHhhcCCe
Q 041423 243 WKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK----DNTELRKLLIETTSKS 297 (500)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~----~~~~l~~l~~~~~~~~ 297 (500)
.+.-+.|.||+|+|||||++.+++.+.+.-..+.+.+.. +...+++.+...++..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 334488999999999999999999999887776555431 3345555555555433
No 405
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.43 E-value=0.027 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||||+|||||+++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37799999999999999999954
No 406
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.41 E-value=0.019 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
-.+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 407
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.40 E-value=0.059 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=26.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
+-+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 347788999999999999999876 4556666554
No 408
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.36 E-value=0.016 Score=50.87 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.30 E-value=0.027 Score=52.91 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=21.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh-------CCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL-------NYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l 275 (500)
+.|.||+|+||||+++.++..+ +.++...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 6788999999999999999987 6666544
No 410
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.28 E-value=0.12 Score=48.32 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.7
Q ss_pred cceeeeCCCCCcHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMI 261 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla 261 (500)
+.+++.+|+|+|||...
T Consensus 67 ~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCEEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHH
Confidence 57999999999999763
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.018 Score=59.94 Aligned_cols=25 Identities=16% Similarity=0.309 Sum_probs=22.3
Q ss_pred ccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 244 KRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
..-+.|.||+|+|||||++.|++.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3348999999999999999999976
No 412
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.27 E-value=0.016 Score=61.70 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.+.|.||+||||||++++||+.++.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 3789999999999999999999863
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.24 E-value=0.015 Score=57.08 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=23.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLE 276 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (500)
-+.|.||||+|||||+++|++...+....+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred eEEEECCCCCcHHHHHHHhccccccccccee
Confidence 4789999999999999999998876654443
No 414
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.24 E-value=0.026 Score=52.46 Aligned_cols=30 Identities=37% Similarity=0.319 Sum_probs=24.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC---CCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN---YDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~---~~i~~l 275 (500)
-+.|.||+|+||||+++.++..++ .++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 367889999999999999999884 555444
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.21 E-value=0.039 Score=55.35 Aligned_cols=33 Identities=36% Similarity=0.393 Sum_probs=27.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
-+.|.|+||+||||++.+++..+ +..+..+++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 58899999999999999999876 6666666554
No 416
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.14 E-value=0.01 Score=56.73 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+.|.|++|+||||+++.|+..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999999984
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.14 E-value=0.037 Score=51.55 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=25.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||+|+||||+++.++..++.+...+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 367889999999999999999998754433
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.13 E-value=0.016 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=19.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-++|.|+||+|||||+..+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 419
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.12 E-value=0.035 Score=55.59 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=20.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||||+|||||+.++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 420
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.11 E-value=0.022 Score=60.62 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||+++|++.+.++
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 48899999999999999999987544
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.09 E-value=0.027 Score=58.87 Aligned_cols=27 Identities=37% Similarity=0.345 Sum_probs=23.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
.-+.|.||+|+|||||+++|++.+.++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 357899999999999999999988664
No 422
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.08 E-value=0.023 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+.|.|++|+||||+++.++..++
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999994
No 423
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.07 E-value=0.025 Score=60.75 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=29.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
-+.|.||+|+|||||++.+++.+.+.-..+.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 4889999999999999999999988877665554
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.04 E-value=0.027 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 425
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.04 E-value=0.13 Score=53.77 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=44.9
Q ss_pred Ccccc--eeeeCCCCCcHHHH-HHHHHHHhCCCEEEEeecccCChHHHHHHHHhhc-----CCeEEEecchhc
Q 041423 242 AWKRG--YLLYGPPGTGKSTM-IAAMANLLNYDVYDLELTAVKDNTELRKLLIETT-----SKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~~~-----~~~Il~iDdiD~ 306 (500)
|..+| .++.|++|||||+| +..|++..+.+++.+-+.--+...++..+..... .++++|.--.|.
T Consensus 171 PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~ 243 (515)
T 2r9v_A 171 PIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASD 243 (515)
T ss_dssp CEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTS
T ss_pred ccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCC
Confidence 44455 89999999999999 6799999988876554444444555555443332 467888766654
No 426
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.01 E-value=0.016 Score=58.21 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=23.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC-CCEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN-YDVYD 274 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~-~~i~~ 274 (500)
-+.|.||||+|||||+++|++.+. .....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCC
Confidence 478999999999999999998776 54333
No 427
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.98 E-value=0.028 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 428
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.98 E-value=0.042 Score=54.76 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|+.+..-++|.|+||+|||+|+..+|..+ +.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45554458999999999999999998764 5666666654
No 429
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.94 E-value=0.023 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-++|.|++|+|||||+.++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
No 430
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.92 E-value=0.018 Score=61.95 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=38.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccC----ChHHHHHHHHhhcCCe
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVK----DNTELRKLLIETTSKS 297 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~----~~~~l~~l~~~~~~~~ 297 (500)
.-+.|.||+|+|||||++.+++.+.+.-..+.+.... +...+++.+...++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 3488999999999999999999999887776655432 3345565555555543
No 431
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.91 E-value=0.022 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|+||+|||||+.++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999999875
No 432
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.90 E-value=0.13 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999988764
No 433
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.90 E-value=0.029 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.90 E-value=0.024 Score=60.17 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
|++...-++|.||||+|||||++.+|+.+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555558999999999999999999876
No 435
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.89 E-value=0.026 Score=49.07 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 436
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.87 E-value=0.069 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+.|.|+||+|||||+.++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999873
No 437
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.86 E-value=0.017 Score=60.34 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.-++|.|.||+||||+++.+|..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35899999999999999999998753
No 438
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.85 E-value=0.03 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
-.+|+||+|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3689999999999999999887754
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.85 E-value=0.023 Score=58.46 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHH
Q 041423 247 YLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (500)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 679999999999999999985
No 440
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.78 E-value=0.03 Score=60.47 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (500)
+-+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999998877655
No 441
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.73 E-value=0.043 Score=56.88 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL---NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l~ 278 (500)
|+....-++|.|+||+|||+++..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 55555558999999999999999888765 5667666654
No 442
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.71 E-value=0.03 Score=62.46 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888777654
No 443
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.65 E-value=0.19 Score=52.96 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=33.8
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecccCChHHHHHHHHh
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIE 292 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~~~~~~~l~~l~~~ 292 (500)
|..+| .++.|++|||||+|+..||+..+.+++.+-+-. +...++..++..
T Consensus 223 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iG-ER~~Ev~e~~~~ 274 (588)
T 3mfy_A 223 PQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIYIGCG-ERGNEMTDVLEE 274 (588)
T ss_dssp CEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEEEECC-SSSSHHHHHHHH
T ss_pred CcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEEEEec-ccHHHHHHHHHH
Confidence 44455 899999999999999999998877754332222 233345555544
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.65 E-value=0.019 Score=61.15 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.|.||+|+|||||+++|++.+.++
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 7899999999999999999988665
No 445
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.62 E-value=0.044 Score=57.64 Aligned_cols=39 Identities=18% Similarity=0.000 Sum_probs=29.9
Q ss_pred CCCcccceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeec
Q 041423 240 GKAWKRGYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELT 278 (500)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~ 278 (500)
|++...-++|.|+||+|||+|+..+|..+ +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45555558999999999999999988765 4567766654
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.59 E-value=0.031 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 447
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.58 E-value=0.034 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|+||+|||||+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 448
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.54 E-value=0.026 Score=60.79 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=29.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCCEEEEeecc
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTA 279 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~l~~ 279 (500)
.-+.|.||+|+|||||++.|++.+.+.-..+.+.+
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 34889999999999999999999988877666554
No 449
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.54 E-value=0.027 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-++|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 450
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.53 E-value=0.14 Score=53.03 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=40.9
Q ss_pred cHhHHHHHHhhhhhccCCCeEEEEEcCC-------------cCcccHHHhcCCeeeEEEEccCCCHHHHHHHHHHhhc
Q 041423 347 TLSGLLNFIDGLWSACGGERLIVFTTNY-------------VEKLDPALIRRGRMDKHIELSYCTFQGFKVLAKNYLN 411 (500)
Q Consensus 347 ~ls~lL~~ldg~~~~~~~~~ivI~TTN~-------------~~~lD~aLlr~GR~d~~I~~~~p~~~~~~~l~~~~l~ 411 (500)
..+.|+..++.- ... ++|++||. ++.|+|.+++ |+.. +.|++++.++..++++..+.
T Consensus 311 a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 311 CFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp HHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 455666666532 233 56655533 7789999999 7755 79999999999999887763
No 451
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.52 E-value=0.042 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
..+++.|++|+|||||+.++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999976
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.51 E-value=0.037 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
-+.|.||+|+||||+++.++..++
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 477889999999999999998873
No 453
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.50 E-value=0.033 Score=52.06 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=23.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
+.|.||+|+||||+++.|++. +..+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 678999999999999999998 5555443
No 454
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.43 E-value=0.22 Score=51.38 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=41.0
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCC------------CEEEEeecccCChHHHHHHHHhh-----cCCeEEEec
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNY------------DVYDLELTAVKDNTELRKLLIET-----TSKSIIVIE 302 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~------------~i~~l~l~~~~~~~~l~~l~~~~-----~~~~Il~iD 302 (500)
|..+| .+|.|++|+|||+|+..||+.... +++.+-+.--+...++..+.... -.++++|.-
T Consensus 143 pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~ 222 (464)
T 3gqb_B 143 TLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLN 222 (464)
T ss_dssp CCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEE
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEE
Confidence 44455 889999999999999999998754 23333333233444444444332 246777776
Q ss_pred chhc
Q 041423 303 DIDC 306 (500)
Q Consensus 303 diD~ 306 (500)
-.|.
T Consensus 223 t~d~ 226 (464)
T 3gqb_B 223 KADD 226 (464)
T ss_dssp ETTS
T ss_pred CCCC
Confidence 5554
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.42 E-value=0.084 Score=52.58 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=25.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh---CCCEEEEee
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL---NYDVYDLEL 277 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~l 277 (500)
-+.|.||||+||||++.++++.+ +..+..++.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 47889999999999999999876 555554443
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.41 E-value=0.026 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.++|.|++|+|||||+.++.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999874
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.39 E-value=0.035 Score=54.44 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||+++|+ .+...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 47899999999999999999 66554
No 458
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.37 E-value=0.036 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 459
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.36 E-value=0.015 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.||||+|||||++++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.34 E-value=0.041 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (500)
..+++.|++|+|||||+.++.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999976
No 461
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.34 E-value=0.039 Score=58.09 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=23.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
.+.|.|++||||||++++||..|+.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999985
No 462
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.33 E-value=0.071 Score=50.43 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=27.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh--CCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL--NYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l--~~~i~~l~l~~ 279 (500)
.+++.|++|+||||++..+|..+ +..+..+++..
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36788999999999999999877 66666666543
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.28 E-value=0.037 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
-.+++.|++|+|||||+..+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 464
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.039 Score=61.56 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=24.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh----CCCEEEEeecc
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL----NYDVYDLELTA 279 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~l~~ 279 (500)
-+++.||||||||+++..++..+ +..+..+..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 47899999999999887766543 45666655544
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.039 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||++.|++.+.++
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC
Confidence 37899999999999999999988654
No 466
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.19 E-value=0.24 Score=51.80 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=41.4
Q ss_pred Ccccc--eeeeCCCCCcHHHH-HHHHHHHhC--------CCEEEEeecccCChHHHHHHHHhhc-----CCeEEEecchh
Q 041423 242 AWKRG--YLLYGPPGTGKSTM-IAAMANLLN--------YDVYDLELTAVKDNTELRKLLIETT-----SKSIIVIEDID 305 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~--------~~i~~l~l~~~~~~~~l~~l~~~~~-----~~~Il~iDdiD 305 (500)
|..+| .++.|++|||||+| +..|++..+ .+++.+-+.--+...++..+..... .++++|.--.|
T Consensus 158 PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad 237 (510)
T 2ck3_A 158 PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATAS 237 (510)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTT
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCC
Confidence 44555 89999999999999 678888765 5554443333344445544443332 46787776655
Q ss_pred c
Q 041423 306 C 306 (500)
Q Consensus 306 ~ 306 (500)
.
T Consensus 238 ~ 238 (510)
T 2ck3_A 238 D 238 (510)
T ss_dssp S
T ss_pred C
Confidence 4
No 467
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.17 E-value=0.042 Score=50.50 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANLLN 269 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (500)
+.+++.|++|+|||||+..+++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999998864
No 468
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.17 E-value=0.2 Score=51.84 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=41.2
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCC-----CEEEEeecccCChHHHHHHHHhh-----cCCeEEEecchhc
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNY-----DVYDLELTAVKDNTELRKLLIET-----TSKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~l~~~~~~~~l~~l~~~~-----~~~~Il~iDdiD~ 306 (500)
|..+| ++|.|++|+|||+|+..||+.... +.+.+-+.--+...++..++... -.++++|.--.|.
T Consensus 148 pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~ 224 (469)
T 2c61_A 148 TLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADD 224 (469)
T ss_dssp CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTS
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCC
Confidence 44455 788999999999999999998865 23333222223444444444332 2577887766554
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.14 E-value=0.043 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (500)
-+.|.|++|+||||.++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999987
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.14 E-value=0.048 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNY 270 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (500)
+.|.|++|+||||+++.++..++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 678899999999999999998755
No 471
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=93.12 E-value=0.033 Score=44.02 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHhhccccchhHHHHHHHhhcCCCCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041423 398 TFQGFKVLAKNYLNVETHTLFETIQKLMEDTKITPADVAENLMPKSPSDNVEKCLSSLIQALKEGKEEAERKQAEEERKQ 477 (500)
Q Consensus 398 ~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 477 (500)
+.++|.+|++.++...... .++....|++.+.+++++|....|.++.+.++++.......++.+.+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~-----------~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-----------RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-----------SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-----------CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 5678999999888654322 13445556666666666666677888888888887666677777777777
Q ss_pred HHhhhh
Q 041423 478 AEESRE 483 (500)
Q Consensus 478 ~~~~~~ 483 (500)
.....+
T Consensus 71 v~~~~~ 76 (88)
T 3vlf_B 71 VISGYK 76 (88)
T ss_dssp HTC---
T ss_pred HhcCcc
Confidence 654443
No 472
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.12 E-value=0.042 Score=48.20 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|++|+|||||+.++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 473
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.09 E-value=0.26 Score=50.87 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=40.7
Q ss_pred Ccccc--eeeeCCCCCcHHHHHHHHHHHhCC--C---EEEEeecccCChHHHHHHHHhh-----cCCeEEEecchhc
Q 041423 242 AWKRG--YLLYGPPGTGKSTMIAAMANLLNY--D---VYDLELTAVKDNTELRKLLIET-----TSKSIIVIEDIDC 306 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~--~---i~~l~l~~~~~~~~l~~l~~~~-----~~~~Il~iDdiD~ 306 (500)
|..+| .+|.|++|+|||+|+..||+.... + ++.+-+.--+...++..++... -.++++|.--.|.
T Consensus 147 pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~ 223 (465)
T 3vr4_D 147 TLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLAND 223 (465)
T ss_dssp CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTS
T ss_pred ccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCC
Confidence 44455 889999999999999999998754 3 3333222223344444443332 2467887766554
No 474
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.06 E-value=0.048 Score=48.16 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 475
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.06 E-value=0.034 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 476
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.05 E-value=0.033 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999763
No 477
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.04 E-value=0.042 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|+||+|||||+.++.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.04 E-value=0.036 Score=59.76 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||+++|++.+.++
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC
Confidence 37899999999999999999987554
No 479
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.03 E-value=0.052 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.+++.|+||+|||||+.++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999874
No 480
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.01 E-value=0.048 Score=54.96 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL 268 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (500)
.+|+||+|+||||+..||+-.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999765
No 481
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.00 E-value=0.29 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999983
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.99 E-value=0.012 Score=57.88 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCCEEEE
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYDVYDL 275 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (500)
-+.|.||||+|||||+++|++.+......+
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I 204 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEI 204 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC---------
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccce
Confidence 478999999999999999998776554443
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.94 E-value=0.052 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 484
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.93 E-value=0.052 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998864
No 485
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.91 E-value=0.052 Score=47.80 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
-.+++.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 486
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.91 E-value=0.053 Score=48.43 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMAN 266 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (500)
.++|.|++|+|||||+.++.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 487
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.89 E-value=0.034 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 488
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.88 E-value=0.052 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 489
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.88 E-value=0.053 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 490
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.86 E-value=0.04 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.+++.|++|+|||||+..+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.82 E-value=0.036 Score=58.93 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.|.||+|+|||||+++|++.+.+.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 7899999999999999999987654
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.79 E-value=0.042 Score=58.39 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 246 GYLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
-+.|.||+|+|||||+++|++.+.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 37899999999999999999987543
No 493
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.78 E-value=0.046 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..++|.|++|+|||||+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35899999999999999999874
No 494
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.77 E-value=0.043 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCC
Q 041423 247 YLLYGPPGTGKSTMIAAMANLLNYD 271 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (500)
+.|.||+|+|||||+++|++.+.+.
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7899999999999999999987543
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.73 E-value=0.11 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.4
Q ss_pred ceeeeCCCCCcHHHHHHH-HHHHh
Q 041423 246 GYLLYGPPGTGKSTMIAA-MANLL 268 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~a-iA~~l 268 (500)
.+++.|++|+|||||+.. +.+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999998 54543
No 496
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.69 E-value=0.15 Score=53.19 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=26.4
Q ss_pred Ccccc--eeeeCCCCCcHHHH-HHHHHHHhCCCEEE
Q 041423 242 AWKRG--YLLYGPPGTGKSTM-IAAMANLLNYDVYD 274 (500)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~ 274 (500)
|..+| .++.|++|||||++ +..|++.-+.+++.
T Consensus 158 PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~ 193 (513)
T 3oaa_A 158 PIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKC 193 (513)
T ss_dssp CCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEE
T ss_pred ccccCCEEEeecCCCCCcchHHHHHHHhhccCCceE
Confidence 44555 89999999999999 57999887777543
No 497
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.68 E-value=0.058 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHH
Q 041423 246 GYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (500)
.++|.|++|+|||||+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 498
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.65 E-value=0.058 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..+++.|++|+|||||+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.65 E-value=0.1 Score=47.96 Aligned_cols=29 Identities=38% Similarity=0.618 Sum_probs=23.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh--CCCEEEE
Q 041423 247 YLLYGPPGTGKSTMIAAMANLL--NYDVYDL 275 (500)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l--~~~i~~l 275 (500)
+.|-|+.|+||||.++.++..| +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 5688999999999999999998 4455443
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.62 E-value=0.052 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHH
Q 041423 245 RGYLLYGPPGTGKSTMIAAMANL 267 (500)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (500)
..++|.|++|+|||||+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999873
Done!