Query 041424
Match_columns 148
No_of_seqs 208 out of 1849
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u30_A Ubiquitin, linear DI-ub 100.0 3.4E-30 1.2E-34 190.4 12.2 121 2-145 31-168 (172)
2 3rt3_B Ubiquitin-like protein 100.0 4.1E-30 1.4E-34 187.4 11.8 122 2-145 13-153 (159)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 2.9E-28 9.9E-33 175.3 12.8 121 2-145 11-148 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.8 2E-19 7E-24 124.8 5.1 84 2-108 20-106 (114)
5 3plu_A Ubiquitin-like modifier 99.7 5.9E-18 2E-22 113.1 7.9 61 2-69 32-92 (93)
6 3phx_B Ubiquitin-like protein 99.7 5.7E-18 2E-22 109.5 7.6 62 2-70 15-76 (79)
7 4fbj_B NEDD8; effector-HOST ta 99.7 8.6E-18 3E-22 111.2 7.4 62 2-70 11-72 (88)
8 1yx5_B Ubiquitin; proteasome, 99.7 7.3E-18 2.5E-22 113.5 7.1 81 2-105 11-91 (98)
9 3dbh_I NEDD8; cell cycle, acti 99.7 2E-17 6.9E-22 108.6 6.4 62 2-70 23-84 (88)
10 4ajy_B Transcription elongatio 99.7 4.5E-17 1.5E-21 113.2 8.2 64 2-72 12-82 (118)
11 1ndd_A NEDD8, protein (ubiquit 99.7 4.3E-17 1.5E-21 103.9 7.2 62 2-70 11-72 (76)
12 2kk8_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 107.9 6.7 62 2-70 21-83 (84)
13 1wju_A NEDD8 ultimate buster-1 99.7 1.6E-17 5.5E-22 112.7 5.2 61 2-70 30-90 (100)
14 3n3k_B Ubiquitin; hydrolase, p 99.7 6.2E-17 2.1E-21 105.5 7.5 62 2-70 14-75 (85)
15 4hcn_B Polyubiquitin, ubiquiti 99.7 5E-17 1.7E-21 109.5 6.7 62 2-70 33-94 (98)
16 1sif_A Ubiquitin; hydrophobic 99.7 7.5E-17 2.6E-21 106.7 7.1 62 2-70 20-81 (88)
17 2uyz_B Small ubiquitin-related 99.7 4E-17 1.4E-21 105.5 5.4 62 2-70 14-75 (79)
18 2fnj_B Transcription elongatio 99.7 5.9E-17 2E-21 112.9 6.5 62 3-71 13-81 (118)
19 2kan_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 109.1 5.9 61 3-70 26-87 (94)
20 3a9j_A Ubiquitin; protein comp 99.7 1.1E-16 3.8E-21 101.9 7.2 62 2-70 11-72 (76)
21 4eew_A Large proline-rich prot 99.7 1.2E-16 4.1E-21 105.3 7.5 61 2-70 28-88 (88)
22 2l7r_A Ubiquitin-like protein 99.7 4.3E-17 1.5E-21 109.0 5.4 62 2-70 28-89 (93)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.2E-16 4.1E-21 104.0 7.2 62 2-70 14-75 (85)
24 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.1E-16 3.8E-21 106.9 7.1 62 2-70 12-73 (96)
25 3v6c_B Ubiquitin; structural g 99.7 1.2E-16 4.3E-21 106.0 7.2 62 2-70 28-89 (91)
26 1uh6_A Ubiquitin-like 5; beta- 99.7 5.3E-17 1.8E-21 110.1 5.3 61 2-69 39-99 (100)
27 2faz_A Ubiquitin-like containi 99.7 2E-16 6.8E-21 101.8 7.8 60 4-70 16-76 (78)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 9.7E-17 3.3E-21 105.3 6.4 62 2-70 18-79 (87)
29 2hj8_A Interferon-induced 17 k 99.7 5.3E-17 1.8E-21 107.4 5.0 62 2-70 15-76 (88)
30 3m62_B UV excision repair prot 99.7 1.1E-16 3.8E-21 109.5 6.7 65 2-73 12-76 (106)
31 3vdz_A Ubiquitin-40S ribosomal 99.7 2E-16 7E-21 109.0 8.1 62 2-70 46-107 (111)
32 4dwf_A HLA-B-associated transc 99.7 2.3E-16 8E-21 104.3 7.5 62 2-71 16-77 (90)
33 3q3f_A Ribonuclease/ubiquitin 99.7 9.5E-17 3.2E-21 120.3 6.1 72 2-96 116-187 (189)
34 2bwf_A Ubiquitin-like protein 99.7 3.6E-16 1.2E-20 100.1 8.0 62 2-70 14-75 (77)
35 1wyw_B Ubiquitin-like protein 99.7 1.1E-16 3.6E-21 107.9 5.7 62 2-70 32-93 (97)
36 1wy8_A NP95-like ring finger p 99.7 1.7E-16 5.8E-21 104.7 6.3 62 2-70 19-81 (89)
37 2wyq_A HHR23A, UV excision rep 99.6 4.1E-16 1.4E-20 101.8 7.9 62 2-70 16-80 (85)
38 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.7E-16 1.3E-20 106.8 7.9 62 2-70 37-99 (105)
39 2dzi_A Ubiquitin-like protein 99.6 4.4E-16 1.5E-20 100.6 7.7 62 2-70 18-79 (81)
40 2lxa_A Ubiquitin-like protein 99.6 9.3E-17 3.2E-21 106.5 4.4 62 2-70 12-77 (87)
41 3l0w_B Monoubiquitinated proli 99.6 3.5E-16 1.2E-20 115.3 7.8 63 2-71 11-73 (169)
42 4a20_A Ubiquitin-like protein 99.6 5.2E-16 1.8E-20 105.0 7.7 60 4-70 34-95 (98)
43 2kd0_A LRR repeats and ubiquit 99.6 7.3E-16 2.5E-20 101.4 8.1 62 2-70 22-83 (85)
44 3rt3_B Ubiquitin-like protein 99.6 4.5E-16 1.6E-20 112.8 7.6 62 2-70 92-153 (159)
45 4b6w_A Tubulin-specific chaper 99.6 3.5E-16 1.2E-20 103.4 6.4 61 3-70 16-83 (86)
46 1we7_A SF3A1 protein; structur 99.6 2.8E-16 9.6E-21 108.8 5.9 62 2-70 46-107 (115)
47 1wgd_A Homocysteine-responsive 99.6 1.9E-16 6.6E-21 105.6 4.7 61 3-70 21-85 (93)
48 1we6_A Splicing factor, putati 99.6 4.1E-16 1.4E-20 107.3 6.3 62 2-70 41-103 (111)
49 2ojr_A Ubiquitin; lanthide-bin 99.6 1.4E-15 4.9E-20 104.6 8.3 62 2-70 46-107 (111)
50 1uel_A HHR23B, UV excision rep 99.6 1.5E-15 5.1E-20 101.7 7.6 62 2-70 11-75 (95)
51 3b1l_X E3 ubiquitin-protein li 99.4 4.9E-17 1.7E-21 104.1 0.0 62 2-70 11-72 (76)
52 3u30_A Ubiquitin, linear DI-ub 99.6 9.1E-16 3.1E-20 112.8 6.7 62 2-70 107-168 (172)
53 1wx8_A Riken cDNA 4931431F19; 99.6 3.7E-16 1.3E-20 104.6 4.0 62 2-70 27-88 (96)
54 2klc_A Ubiquilin-1; ubiquitin- 99.6 2.1E-15 7.2E-20 102.3 7.7 62 2-70 35-96 (101)
55 1v5o_A 1700011N24RIK protein; 99.6 9.6E-16 3.3E-20 104.0 5.8 64 2-72 22-86 (102)
56 2kjr_A CG11242; UBL, ubiquitin 99.6 1.5E-15 5.1E-20 102.1 6.6 60 2-68 28-93 (95)
57 3m63_B Ubiquitin domain-contai 99.6 4.2E-16 1.4E-20 105.8 3.9 62 2-70 38-99 (101)
58 1j8c_A Ubiquitin-like protein 99.6 3.1E-15 1.1E-19 105.2 8.0 62 2-70 42-103 (125)
59 1ttn_A DC-UBP, dendritic cell- 99.6 1.7E-15 5.9E-20 103.5 6.4 62 2-70 34-95 (106)
60 1yqb_A Ubiquilin 3; structural 99.6 1.8E-15 6.3E-20 102.4 6.2 61 3-70 33-93 (100)
61 2kj6_A Tubulin folding cofacto 99.6 1.2E-15 4E-20 103.1 4.8 61 3-70 28-95 (97)
62 1wgh_A Ubiquitin-like 3, HCG-1 99.6 6.8E-15 2.3E-19 102.3 7.8 62 2-70 27-98 (116)
63 1se9_A Ubiquitin family; ubiqu 99.6 4.1E-15 1.4E-19 104.6 6.6 61 3-70 28-102 (126)
64 3u5e_m 60S ribosomal protein L 99.6 2.2E-16 7.7E-21 111.3 0.0 62 2-70 11-72 (128)
65 1v5t_A 8430435I17RIK protein; 99.6 3.6E-15 1.2E-19 99.0 5.2 62 2-70 17-82 (90)
66 3b08_A Polyubiquitin-C, ubiqui 99.6 8.5E-15 2.9E-19 104.6 7.6 62 2-70 87-148 (152)
67 2daf_A FLJ35834 protein; hypot 99.6 6.4E-15 2.2E-19 102.1 6.6 64 3-73 28-91 (118)
68 2kdb_A Homocysteine-responsive 99.6 3.1E-15 1.1E-19 101.3 4.8 59 3-68 37-99 (99)
69 1wx7_A Ubiquilin 3; ubiquitin- 99.5 6.6E-15 2.2E-19 100.4 6.2 63 3-72 28-90 (106)
70 3u5c_f 40S ribosomal protein S 99.5 5.1E-16 1.8E-20 112.7 0.0 62 2-70 11-72 (152)
71 2dzm_A FAS-associated factor 1 99.5 4.4E-15 1.5E-19 100.7 4.2 61 2-70 19-81 (100)
72 2gow_A HCG-1 protein, ubiquiti 99.5 7.8E-15 2.7E-19 103.2 5.4 63 2-71 28-100 (125)
73 1wxv_A BAG-family molecular ch 99.5 1.3E-14 4.3E-19 96.4 5.9 62 2-70 17-84 (92)
74 1v6e_A Cytoskeleton-associated 99.5 2.2E-14 7.5E-19 96.1 6.6 61 3-70 20-87 (95)
75 1wgg_A Ubiquitin carboxyl-term 99.5 2.2E-14 7.6E-19 96.4 6.2 63 2-72 17-80 (96)
76 1v86_A DNA segment, CHR 7, way 99.5 6.9E-15 2.4E-19 98.7 3.4 61 2-70 27-87 (95)
77 1v2y_A 3300001G02RIK protein; 99.5 3.6E-15 1.2E-19 102.0 2.0 62 2-70 18-95 (105)
78 1wia_A Hypothetical ubiquitin- 99.5 6.2E-14 2.1E-18 93.6 7.3 61 2-72 18-79 (95)
79 1x1m_A Ubiquitin-like protein 99.5 3E-14 1E-18 97.4 5.0 62 2-70 26-99 (107)
80 1t0y_A Tubulin folding cofacto 99.5 1.1E-13 3.9E-18 96.7 7.6 61 3-70 19-86 (122)
81 2dzj_A Synaptic glycoprotein S 99.4 1.3E-13 4.5E-18 91.3 5.3 56 5-67 26-85 (88)
82 3ai5_A Yeast enhanced green fl 99.4 4.4E-13 1.5E-17 107.0 7.5 62 2-70 244-305 (307)
83 4eew_A Large proline-rich prot 99.4 3E-13 1E-17 88.8 4.6 70 59-145 2-88 (88)
84 2xzm_9 RPS31E; ribosome, trans 99.4 3.8E-14 1.3E-18 106.0 0.0 57 2-70 11-67 (189)
85 3shq_A UBLCP1; phosphatase, hy 99.4 5.4E-13 1.8E-17 107.2 5.7 65 2-73 15-82 (320)
86 1wf9_A NPL4 family protein; be 99.3 8.7E-13 3E-17 90.2 3.9 61 3-70 18-94 (107)
87 3plu_A Ubiquitin-like modifier 99.3 1.6E-12 5.5E-17 86.7 4.5 55 89-143 20-91 (93)
88 3phx_B Ubiquitin-like protein 99.3 2.3E-12 7.8E-17 82.8 5.1 57 89-145 3-76 (79)
89 1oqy_A HHR23A, UV excision rep 99.3 2E-12 7E-17 105.5 5.8 63 2-71 18-84 (368)
90 3v6c_B Ubiquitin; structural g 99.3 2.2E-12 7.5E-17 85.3 4.1 59 87-145 14-89 (91)
91 2io1_B Small ubiquitin-related 99.3 1.4E-11 4.7E-16 82.5 7.4 62 2-70 18-79 (94)
92 2faz_A Ubiquitin-like containi 99.3 4.6E-12 1.6E-16 81.1 4.8 57 89-145 1-76 (78)
93 4fbj_B NEDD8; effector-HOST ta 99.2 9.2E-12 3.1E-16 82.0 4.7 55 91-145 1-72 (88)
94 1uh6_A Ubiquitin-like 5; beta- 99.2 6.8E-12 2.3E-16 84.9 4.1 56 89-144 27-99 (100)
95 2kk8_A Uncharacterized protein 99.2 8.4E-12 2.9E-16 81.7 4.4 56 90-145 10-83 (84)
96 2uyz_B Small ubiquitin-related 99.2 1.2E-11 4.1E-16 79.4 4.3 55 91-145 4-75 (79)
97 3k9o_B Ubiquitin, UBB+1; E2-25 99.2 1.7E-11 5.8E-16 81.5 5.1 56 90-145 1-73 (96)
98 1wyw_B Ubiquitin-like protein 99.2 1.4E-11 4.8E-16 82.6 4.6 58 88-145 19-93 (97)
99 3m62_B UV excision repair prot 99.2 1.4E-11 4.8E-16 83.9 4.4 56 91-146 2-74 (106)
100 1sif_A Ubiquitin; hydrophobic 99.2 1.8E-11 6.1E-16 80.6 4.7 58 89-146 8-82 (88)
101 4dwf_A HLA-B-associated transc 99.2 1.8E-11 6.3E-16 80.4 4.7 56 90-146 5-77 (90)
102 3dbh_I NEDD8; cell cycle, acti 99.2 1.9E-11 6.3E-16 79.8 4.2 57 89-145 11-84 (88)
103 4a20_A Ubiquitin-like protein 99.2 2.8E-11 9.5E-16 81.6 5.1 59 87-145 16-95 (98)
104 1wjn_A Tubulin-folding protein 99.2 6.2E-11 2.1E-15 79.3 6.8 61 3-70 24-92 (97)
105 1ndd_A NEDD8, protein (ubiquit 99.2 3.2E-11 1.1E-15 76.2 5.0 56 91-146 1-73 (76)
106 2lxa_A Ubiquitin-like protein 99.2 2.1E-11 7.3E-16 80.5 4.1 55 91-145 2-77 (87)
107 4hcn_B Polyubiquitin, ubiquiti 99.2 2.6E-11 8.8E-16 81.3 4.5 58 88-145 20-94 (98)
108 2kzr_A Ubiquitin thioesterase 99.1 4.3E-11 1.5E-15 78.4 5.3 60 4-70 12-77 (86)
109 3m63_B Ubiquitin domain-contai 99.1 1.8E-11 6.1E-16 82.8 3.3 55 91-146 29-100 (101)
110 2io0_B Small ubiquitin-related 99.1 1.5E-10 5E-15 77.0 7.5 62 2-70 16-77 (91)
111 2hj8_A Interferon-induced 17 k 99.1 2.8E-11 9.6E-16 79.6 3.6 56 90-145 4-76 (88)
112 2d07_B Ubiquitin-like protein 99.1 2.3E-10 7.9E-15 76.3 8.0 62 2-70 28-89 (93)
113 3n3k_B Ubiquitin; hydrolase, p 99.1 5.6E-11 1.9E-15 76.9 4.8 55 91-145 4-75 (85)
114 3a9j_A Ubiquitin; protein comp 99.1 7.9E-11 2.7E-15 74.4 5.1 55 91-145 1-72 (76)
115 1wm3_A Ubiquitin-like protein 99.1 2.9E-10 1E-14 72.2 7.7 60 2-68 12-71 (72)
116 2wyq_A HHR23A, UV excision rep 99.1 8.8E-11 3E-15 76.1 5.2 59 88-146 3-81 (85)
117 1wh3_A 59 kDa 2'-5'-oligoadeny 99.1 6.3E-11 2.2E-15 77.2 4.4 58 89-146 6-80 (87)
118 2dzi_A Ubiquitin-like protein 99.1 6.1E-11 2.1E-15 76.1 3.8 57 89-145 6-79 (81)
119 3b1l_X E3 ubiquitin-protein li 98.7 9.9E-12 3.4E-16 79.1 0.0 55 91-145 1-72 (76)
120 2l7r_A Ubiquitin-like protein 99.1 7.9E-11 2.7E-15 78.3 4.4 60 84-145 13-89 (93)
121 1v2y_A 3300001G02RIK protein; 99.1 7.1E-11 2.4E-15 80.6 4.2 56 90-145 7-95 (105)
122 2bwf_A Ubiquitin-like protein 99.1 1.4E-10 4.8E-15 73.7 5.4 54 91-145 5-75 (77)
123 3mtn_B UBA80, ubcep1, ubiquiti 99.1 1E-10 3.5E-15 75.6 4.7 55 91-145 4-75 (85)
124 1ttn_A DC-UBP, dendritic cell- 99.1 8.1E-11 2.8E-15 80.0 4.4 58 89-146 22-96 (106)
125 1wy8_A NP95-like ring finger p 99.1 1.4E-10 4.6E-15 76.0 4.8 58 89-146 6-82 (89)
126 2kan_A Uncharacterized protein 99.1 1.3E-10 4.3E-15 77.6 4.7 57 88-145 13-87 (94)
127 2fnj_B Transcription elongatio 99.1 1.2E-10 4E-15 81.0 4.6 55 91-145 1-80 (118)
128 1yx5_B Ubiquitin; proteasome, 99.1 1.9E-10 6.4E-15 76.9 5.1 56 91-146 1-73 (98)
129 1wia_A Hypothetical ubiquitin- 99.0 1.6E-10 5.5E-15 76.8 4.6 58 89-146 6-78 (95)
130 3vdz_A Ubiquitin-40S ribosomal 99.0 3.1E-10 1.1E-14 77.8 6.1 57 89-145 34-107 (111)
131 1uel_A HHR23B, UV excision rep 99.0 2.3E-10 7.7E-15 76.3 5.1 56 91-146 1-76 (95)
132 3l0w_B Monoubiquitinated proli 99.0 2.2E-10 7.4E-15 84.2 5.1 55 91-145 1-72 (169)
133 4ajy_B Transcription elongatio 99.0 1.9E-10 6.7E-15 79.7 4.5 55 92-146 2-81 (118)
134 1wgh_A Ubiquitin-like 3, HCG-1 99.0 2.2E-10 7.5E-15 79.4 4.7 58 89-146 15-99 (116)
135 2kdb_A Homocysteine-responsive 99.0 1E-10 3.5E-15 78.9 2.9 55 89-143 22-99 (99)
136 2eke_C Ubiquitin-like protein 99.0 8.2E-10 2.8E-14 75.4 7.4 62 2-70 41-102 (106)
137 2kdi_A Ubiquitin, vacuolar pro 99.0 2.8E-10 9.6E-15 78.5 4.9 58 89-146 8-82 (114)
138 1wz0_A Ubiquitin-like protein 99.0 4.4E-10 1.5E-14 76.5 5.7 62 2-70 35-96 (104)
139 1se9_A Ubiquitin family; ubiqu 99.0 3.6E-10 1.2E-14 79.3 5.0 57 89-145 15-102 (126)
140 3a4r_A Nfatc2-interacting prot 99.0 9.4E-10 3.2E-14 71.1 6.6 59 3-68 20-78 (79)
141 1wx7_A Ubiquilin 3; ubiquitin- 99.0 3.3E-10 1.1E-14 76.9 4.3 57 88-145 15-88 (106)
142 1yqb_A Ubiquilin 3; structural 99.0 4.1E-10 1.4E-14 75.9 4.6 58 87-145 19-93 (100)
143 1wju_A NEDD8 ultimate buster-1 99.0 3.4E-10 1.2E-14 76.5 3.6 44 100-143 29-89 (100)
144 1wx8_A Riken cDNA 4931431F19; 99.0 2.7E-10 9.1E-15 75.8 2.9 56 89-145 16-88 (96)
145 3q3f_A Ribonuclease/ubiquitin 98.9 5.1E-10 1.7E-14 83.7 4.3 56 90-145 105-177 (189)
146 2gow_A HCG-1 protein, ubiquiti 98.9 6.9E-10 2.4E-14 77.8 4.7 58 89-146 16-100 (125)
147 3u5e_m 60S ribosomal protein L 98.9 8.7E-11 3E-15 82.5 0.0 56 91-146 1-73 (128)
148 2klc_A Ubiquilin-1; ubiquitin- 98.9 1E-09 3.6E-14 74.0 5.3 55 90-145 25-96 (101)
149 1j8c_A Ubiquitin-like protein 98.9 8.3E-10 2.8E-14 77.3 4.9 57 89-146 31-104 (125)
150 2ojr_A Ubiquitin; lanthide-bin 98.9 9.2E-10 3.1E-14 75.3 5.0 57 89-145 34-107 (111)
151 1wgd_A Homocysteine-responsive 98.9 6.4E-10 2.2E-14 73.6 3.8 56 90-145 7-85 (93)
152 2k8h_A Small ubiquitin protein 98.9 5.4E-10 1.8E-14 76.8 3.3 62 2-70 37-98 (110)
153 2daf_A FLJ35834 protein; hypot 98.9 1.6E-09 5.4E-14 75.0 4.7 56 91-146 16-89 (118)
154 3u5c_f 40S ribosomal protein S 98.9 1.9E-10 6.5E-15 83.3 0.0 55 91-145 1-72 (152)
155 1we6_A Splicing factor, putati 98.9 9.7E-10 3.3E-14 75.2 3.6 57 89-145 26-103 (111)
156 1we7_A SF3A1 protein; structur 98.9 2.9E-09 9.9E-14 73.3 5.3 47 99-145 44-107 (115)
157 1v5o_A 1700011N24RIK protein; 98.9 1.9E-09 6.6E-14 72.6 4.3 57 90-146 7-85 (102)
158 4dbg_A Ranbp-type and C3HC4-ty 98.8 3.7E-09 1.3E-13 71.9 5.3 56 91-146 25-100 (105)
159 2kd0_A LRR repeats and ubiquit 98.8 4.4E-09 1.5E-13 68.7 4.4 53 93-145 14-83 (85)
160 2dzm_A FAS-associated factor 1 98.8 2.8E-09 9.6E-14 72.0 2.9 57 90-147 8-83 (100)
161 1v5t_A 8430435I17RIK protein; 98.7 7.7E-09 2.6E-13 68.2 4.3 55 90-145 7-82 (90)
162 3ai5_A Yeast enhanced green fl 98.7 1.1E-08 3.9E-13 81.5 4.6 58 88-145 231-305 (307)
163 4efo_A Serine/threonine-protei 98.7 3.4E-08 1.2E-12 65.8 6.1 62 2-70 24-88 (94)
164 1wgg_A Ubiquitin carboxyl-term 98.7 7.4E-09 2.5E-13 69.2 2.9 54 90-145 7-78 (96)
165 1oqy_A HHR23A, UV excision rep 98.6 2.1E-08 7E-13 81.9 4.1 57 89-145 6-83 (368)
166 2io1_B Small ubiquitin-related 98.6 4.2E-08 1.4E-12 65.4 4.7 57 89-145 6-79 (94)
167 1x1m_A Ubiquitin-like protein 98.6 4.3E-08 1.5E-12 66.6 4.6 32 115-146 69-100 (107)
168 2dzj_A Synaptic glycoprotein S 98.6 2.3E-08 8E-13 65.8 2.8 53 90-142 10-85 (88)
169 1v86_A DNA segment, CHR 7, way 98.5 3.4E-08 1.2E-12 65.7 3.0 54 90-145 17-87 (95)
170 3pge_A SUMO-modified prolifera 98.5 3.7E-07 1.3E-11 68.6 8.5 64 2-72 39-102 (200)
171 2xzm_9 RPS31E; ribosome, trans 98.5 1.2E-08 3.9E-13 76.2 0.0 50 91-145 1-67 (189)
172 3kyd_D Small ubiquitin-related 98.5 6.1E-07 2.1E-11 61.8 8.0 62 2-70 51-112 (115)
173 4b6w_A Tubulin-specific chaper 98.5 9.4E-08 3.2E-12 62.6 3.8 38 109-146 30-84 (86)
174 2kjr_A CG11242; UBL, ubiquitin 98.5 1.3E-07 4.4E-12 63.1 4.5 54 91-144 16-94 (95)
175 1wxv_A BAG-family molecular ch 98.5 1.3E-07 4.4E-12 62.2 4.2 37 109-145 37-84 (92)
176 1wm3_A Ubiquitin-like protein 98.4 2.4E-07 8.1E-12 58.5 4.1 54 91-144 2-72 (72)
177 2pjh_A Protein NPL4, nuclear p 98.4 2.2E-07 7.4E-12 60.1 3.6 59 3-68 15-78 (80)
178 2io0_B Small ubiquitin-related 98.4 3E-07 1E-11 60.9 4.3 56 90-145 5-77 (91)
179 3tix_A Ubiquitin-like protein 98.3 8.1E-07 2.8E-11 66.3 5.9 63 2-71 67-129 (207)
180 2d07_B Ubiquitin-like protein 98.3 6.2E-07 2.1E-11 59.5 4.3 56 90-145 17-89 (93)
181 2kj6_A Tubulin folding cofacto 98.3 3.8E-07 1.3E-11 61.0 3.2 38 109-146 42-96 (97)
182 3a4r_A Nfatc2-interacting prot 98.2 9.4E-07 3.2E-11 56.8 4.1 55 89-143 6-78 (79)
183 1wz0_A Ubiquitin-like protein 98.2 6.1E-07 2.1E-11 60.8 3.1 57 89-145 23-96 (104)
184 2eke_C Ubiquitin-like protein 98.2 1.2E-06 4.3E-11 59.5 4.6 56 89-145 30-102 (106)
185 1wf9_A NPL4 family protein; be 98.2 5.2E-07 1.8E-11 61.2 2.6 55 91-145 8-94 (107)
186 2k8h_A Small ubiquitin protein 98.1 8.7E-07 3E-11 60.6 2.1 56 90-145 26-98 (110)
187 3goe_A DNA repair protein RAD6 98.1 1.7E-05 5.7E-10 50.8 7.7 60 3-69 21-81 (82)
188 1v6e_A Cytoskeleton-associated 98.1 1.8E-06 6.2E-11 57.1 3.3 38 109-146 34-88 (95)
189 3shq_A UBLCP1; phosphatase, hy 98.1 1.9E-06 6.7E-11 68.9 3.7 53 91-144 6-78 (320)
190 1t0y_A Tubulin folding cofacto 98.0 4E-06 1.4E-10 58.1 4.3 38 109-146 33-87 (122)
191 2kzr_A Ubiquitin thioesterase 98.0 3.1E-06 1.1E-10 54.9 3.4 54 91-145 1-77 (86)
192 3v7o_A Minor nucleoprotein VP3 98.0 7.1E-07 2.4E-11 67.4 0.0 62 2-70 31-92 (227)
193 3uf8_A Ubiquitin-like protein 97.6 0.00017 5.7E-09 54.3 7.4 64 3-73 32-95 (209)
194 3kyd_D Small ubiquitin-related 97.6 8.3E-05 2.8E-09 51.1 4.7 57 90-146 40-113 (115)
195 3ix6_A TS, tsase, thymidylate 97.6 1E-05 3.4E-10 65.7 -0.0 65 3-74 32-96 (360)
196 2jxx_A Nfatc2-interacting prot 97.5 0.00023 8E-09 47.4 6.3 59 3-68 38-96 (97)
197 1wjn_A Tubulin-folding protein 97.3 0.00026 8.9E-09 46.6 4.4 38 109-146 38-93 (97)
198 4da1_A Protein phosphatase 1K, 97.3 3.7E-05 1.3E-09 62.7 0.0 65 3-74 41-105 (389)
199 3pge_A SUMO-modified prolifera 97.2 0.00044 1.5E-08 51.8 4.6 57 90-147 29-102 (200)
200 3tix_A Ubiquitin-like protein 97.0 0.00053 1.8E-08 51.2 3.7 56 89-145 56-128 (207)
201 2l76_A Nfatc2-interacting prot 96.9 0.0025 8.4E-08 42.2 6.0 61 3-70 32-92 (95)
202 2bps_A YUKD protein; ubiquitin 96.7 0.0016 5.5E-08 41.9 4.1 59 2-67 17-80 (81)
203 2al3_A TUG long isoform; TUG U 96.6 0.0038 1.3E-07 40.9 5.2 62 2-70 20-81 (90)
204 2kc2_A Talin-1, F1; FERM, adhe 96.6 0.0016 5.5E-08 45.4 3.6 61 2-69 22-121 (128)
205 3v7o_A Minor nucleoprotein VP3 96.3 0.0006 2.1E-08 51.5 0.0 56 89-145 20-92 (227)
206 3ivf_A Talin-1; FERM domain, c 96.1 0.093 3.2E-06 42.0 11.9 115 3-143 14-165 (371)
207 2bps_A YUKD protein; ubiquitin 95.8 0.0055 1.9E-07 39.4 2.7 27 116-142 54-80 (81)
208 2jxx_A Nfatc2-interacting prot 95.7 0.013 4.3E-07 38.9 4.3 28 116-143 69-96 (97)
209 3goe_A DNA repair protein RAD6 95.6 0.022 7.6E-07 36.3 4.8 29 116-144 53-81 (82)
210 2al3_A TUG long isoform; TUG U 94.9 0.036 1.2E-06 36.2 4.4 58 88-145 7-81 (90)
211 3jyu_A Ubiquitin carboxyl-term 94.5 0.19 6.3E-06 38.0 8.1 60 4-70 154-220 (231)
212 3qx1_A FAS-associated factor 1 94.3 0.23 7.9E-06 31.4 7.1 59 3-69 19-82 (84)
213 4e71_A Plexin-B2, MM1; transme 94.2 0.18 6.1E-06 34.1 6.6 66 4-70 26-110 (111)
214 2l76_A Nfatc2-interacting prot 94.1 0.077 2.6E-06 34.9 4.6 29 116-144 63-91 (95)
215 3ix6_A TS, tsase, thymidylate 94.0 0.0094 3.2E-07 48.3 0.0 56 89-145 20-92 (360)
216 2juo_A GA-binding protein alph 93.7 0.3 1E-05 31.4 6.5 60 4-70 5-64 (89)
217 3h6n_A Plexin-D1; structural g 93.7 0.6 2.1E-05 32.2 8.6 66 4-70 19-104 (127)
218 4a3p_A Ubiquitin carboxyl-term 93.6 0.14 4.9E-06 38.2 6.0 60 4-70 142-208 (217)
219 2kvr_A Ubiquitin carboxyl-term 93.4 0.077 2.6E-06 36.8 3.9 34 4-37 58-91 (130)
220 2pjh_A Protein NPL4, nuclear p 92.8 0.059 2E-06 34.1 2.3 21 124-144 59-79 (80)
221 2kc2_A Talin-1, F1; FERM, adhe 92.3 0.14 4.7E-06 35.5 3.8 24 121-144 98-121 (128)
222 1oey_A P67-PHOX, neutrophil cy 92.1 0.28 9.6E-06 31.4 4.8 37 3-39 15-51 (83)
223 4e74_A Plexin-A4; RBD, structu 91.9 0.49 1.7E-05 32.2 6.1 67 4-70 29-114 (117)
224 3uf8_A Ubiquitin-like protein 91.6 0.2 6.9E-06 37.2 4.3 55 90-145 21-92 (209)
225 4da1_A Protein phosphatase 1K, 91.5 0.035 1.2E-06 44.9 0.0 56 90-146 30-102 (389)
226 3kuz_A Plexin-C1; structural g 91.1 1.3 4.3E-05 30.5 7.5 66 3-68 40-124 (126)
227 2r2o_A Plexin-B1; effector dom 90.9 0.59 2E-05 32.7 5.8 67 3-70 42-128 (138)
228 2dzk_A UBX domain-containing p 90.0 1.2 4E-05 29.6 6.6 61 3-70 25-90 (109)
229 1wj4_A KIAA0794 protein; UBX d 88.9 1.5 5.2E-05 29.8 6.6 60 3-70 55-119 (124)
230 4eut_A Serine/threonine-protei 88.4 1.3 4.3E-05 35.1 6.8 38 3-40 323-360 (396)
231 2ylm_A Ubiquitin carboxyl-term 84.7 0.88 3E-05 38.4 4.2 32 4-35 38-69 (530)
232 3ig3_A Plxna3 protein; plexin 81.8 6.9 0.00023 33.7 8.4 68 3-71 248-335 (627)
233 3qa8_A MGC80376 protein; kinas 79.7 1.2 4.1E-05 38.8 3.2 42 4-45 324-366 (676)
234 4e71_A Plexin-B2, MM1; transme 79.6 1.2 4.1E-05 30.0 2.5 19 127-145 92-110 (111)
235 3hm6_X Plexin-B1; structural g 79.5 8.6 0.00029 33.2 8.3 67 4-71 276-362 (644)
236 1tyg_B YJBS; alpha beta barrel 79.3 4.6 0.00016 25.7 5.2 53 6-70 30-83 (87)
237 2daj_A KIAA0977 protein, COBL- 78.9 1.8 6.2E-05 27.9 3.1 52 3-61 22-76 (91)
238 3h6n_A Plexin-D1; structural g 78.7 1.4 4.8E-05 30.4 2.7 20 127-146 86-105 (127)
239 4e74_A Plexin-A4; RBD, structu 78.2 1.4 4.8E-05 29.9 2.5 20 127-146 96-115 (117)
240 1ryj_A Unknown; beta/alpha pro 74.5 11 0.00039 22.5 7.2 51 4-70 16-66 (70)
241 3onh_A Ubiquitin-activating en 73.8 10 0.00035 26.0 6.0 53 11-70 19-79 (127)
242 2cu3_A Unknown function protei 73.0 7.2 0.00025 22.9 4.6 52 6-70 9-60 (64)
243 1f0z_A THis protein; ubiquitin 72.1 4.9 0.00017 23.7 3.7 53 6-70 10-62 (66)
244 2cr5_A Reproduction 8; UBX dom 68.3 10 0.00035 24.8 5.0 60 3-70 35-98 (109)
245 2r2o_A Plexin-B1; effector dom 67.7 3.5 0.00012 28.8 2.5 20 127-146 110-129 (138)
246 1s3s_G P47 protein; AAA ATPase 67.7 5.4 0.00018 27.1 3.5 56 3-65 64-123 (127)
247 3kuz_A Plexin-C1; structural g 67.7 3.7 0.00013 28.2 2.6 17 127-143 108-124 (126)
248 3qx1_A FAS-associated factor 1 67.5 4.6 0.00016 25.1 3.0 28 118-145 53-83 (84)
249 3rpf_C Molybdopterin convertin 63.9 18 0.00062 21.6 5.2 53 6-70 16-70 (74)
250 1fm0_D Molybdopterin convertin 61.2 17 0.00057 21.9 4.7 54 4-70 19-77 (81)
251 2kl0_A Putative thiamin biosyn 60.3 12 0.00043 22.7 3.9 52 6-70 10-61 (73)
252 2k5p_A THis protein, thiamine- 60.2 11 0.00036 23.3 3.6 53 6-70 10-65 (78)
253 2l32_A Small archaeal modifier 58.1 21 0.00073 21.6 4.8 49 4-69 13-61 (74)
254 1pqs_A Cell division control p 57.8 10 0.00035 23.6 3.2 37 2-38 2-43 (77)
255 2kmc_A Fermitin family homolog 57.6 37 0.0013 22.2 6.2 61 3-70 34-99 (102)
256 2cr5_A Reproduction 8; UBX dom 56.2 15 0.00052 24.0 4.1 29 118-146 69-99 (109)
257 3po0_A Small archaeal modifier 55.5 33 0.0011 21.0 6.6 57 2-70 18-85 (89)
258 2c7h_A RBBP6, retinoblastoma-b 53.4 20 0.00068 22.8 4.1 31 5-35 21-52 (86)
259 3r8s_T 50S ribosomal protein L 52.4 21 0.00071 23.0 4.1 38 2-39 28-66 (93)
260 1vq8_S 50S ribosomal protein L 51.5 22 0.00074 22.5 4.0 33 2-34 23-55 (85)
261 1wgy_A RAP guanine nucleotide 51.4 39 0.0014 22.2 5.4 61 3-70 21-86 (104)
262 1ip9_A BEM1 protein; ubiquitin 49.8 39 0.0013 21.4 5.0 32 3-36 23-54 (85)
263 1vjk_A Molybdopterin convertin 49.4 46 0.0016 20.9 6.9 55 3-69 28-93 (98)
264 3tve_T 50S ribosomal protein L 45.8 27 0.00092 22.4 3.9 38 2-39 22-60 (92)
265 1rws_A Hypothetical protein PF 45.7 8.7 0.0003 23.4 1.4 48 6-69 25-72 (77)
266 2q5w_D Molybdopterin convertin 45.7 23 0.00079 21.0 3.4 53 4-69 18-72 (77)
267 1wj4_A KIAA0794 protein; UBX d 45.4 17 0.00059 24.4 3.0 29 118-146 89-120 (124)
268 1vd2_A Protein kinase C, IOTA 44.2 59 0.002 20.6 6.0 36 3-38 17-53 (89)
269 3j21_T 50S ribosomal protein L 43.4 34 0.0012 21.7 4.0 33 2-34 24-56 (86)
270 1wgk_A Riken cDNA 2900073H19 p 43.1 15 0.00052 24.3 2.4 23 3-25 31-56 (114)
271 1q1o_A Cell division control p 42.8 22 0.00077 23.1 3.1 26 3-28 24-49 (98)
272 2g1e_A Hypothetical protein TA 40.3 60 0.0021 19.6 6.2 57 6-70 19-86 (90)
273 2eel_A Cell death activator CI 39.9 66 0.0023 20.6 5.0 49 12-70 28-78 (91)
274 2cx6_A Hypothetical protein YH 39.1 38 0.0013 21.3 3.8 29 1-29 1-29 (90)
275 2ylm_A Ubiquitin carboxyl-term 38.2 22 0.00076 29.8 3.2 57 6-69 151-216 (530)
276 2juo_A GA-binding protein alph 35.5 62 0.0021 20.6 4.2 29 116-144 35-63 (89)
277 2zjr_Q 50S ribosomal protein L 35.0 44 0.0015 21.5 3.6 31 3-33 24-54 (95)
278 3ivf_A Talin-1; FERM domain, c 33.6 36 0.0012 26.7 3.7 26 120-145 59-84 (371)
279 3hm6_X Plexin-B1; structural g 32.3 26 0.00088 30.3 2.6 20 127-146 343-362 (644)
280 3ge3_C Toluene-4-monooxygenase 31.9 97 0.0033 19.5 5.2 59 5-70 18-83 (84)
281 3e19_A FEOA; transcriptional r 31.4 35 0.0012 20.3 2.6 18 53-70 30-47 (77)
282 3ig3_A Plxna3 protein; plexin 31.0 28 0.00095 30.0 2.6 20 127-146 316-335 (627)
283 2za4_B Barstar; protein-protei 30.4 59 0.002 20.2 3.6 29 1-29 1-29 (90)
284 2zkr_s 60S ribosomal protein L 30.2 64 0.0022 22.7 4.0 32 2-33 94-125 (156)
285 2qjl_A URM1, ubiquitin-related 29.7 1E+02 0.0036 19.2 7.3 23 3-25 21-45 (99)
286 1wgr_A Growth factor receptor- 28.4 73 0.0025 20.6 3.8 30 2-31 20-49 (100)
287 2lgx_A Fermitin family homolog 28.4 43 0.0015 22.3 2.7 61 3-70 37-102 (112)
288 4gdk_A Ubiquitin-like protein 27.8 83 0.0028 19.9 4.0 35 5-39 23-57 (91)
289 3h9d_A ATG8, microtubule-assoc 27.7 95 0.0033 20.7 4.4 40 6-45 52-92 (119)
290 2zjd_A Microtubule-associated 27.5 1.1E+02 0.0038 20.7 4.8 58 6-70 57-119 (130)
291 1f2r_I Inhibitor of caspase-ac 25.6 1.4E+02 0.0046 19.4 4.7 49 12-70 37-89 (100)
292 3u5e_X 60S ribosomal protein L 25.1 90 0.0031 21.6 4.0 32 2-33 80-111 (142)
293 4a17_R RPL23A, 60S ribosomal p 24.6 92 0.0032 21.8 4.0 32 2-33 88-119 (150)
294 2l66_A SSO7C4, transcriptional 23.5 56 0.0019 18.2 2.3 19 128-146 20-38 (53)
295 2v1y_A Phosphatidylinositol-4, 23.3 84 0.0029 20.7 3.4 22 3-24 31-52 (108)
296 3u52_E Phenol hydroxylase comp 22.4 1.8E+02 0.0062 19.5 7.1 58 4-68 40-107 (119)
297 1dd4_C 50S ribosomal protein L 22.1 75 0.0025 17.0 2.5 16 15-30 19-34 (40)
298 2r2q_A Gamma-aminobutyric acid 21.8 1.4E+02 0.0048 19.4 4.3 34 6-39 48-81 (110)
299 1ef1_A Moesin; membrane, FERM 21.8 2.5E+02 0.0084 20.8 8.4 61 3-70 12-78 (294)
300 1y8x_B Ubiquitin-activating en 21.3 1.1E+02 0.0036 19.7 3.6 58 4-68 7-82 (98)
301 3m95_A Autophagy related prote 21.3 1.1E+02 0.0039 20.5 3.9 34 6-39 57-90 (125)
302 3rui_B Autophagy-related prote 21.1 1.4E+02 0.0049 19.7 4.3 33 6-38 51-83 (118)
No 1
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=190.36 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=115.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccccC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISVKA 81 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~~~ 81 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||+++++++++.+
T Consensus 31 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~-------tL~~~~i~~~~~l~l~~~----------- 92 (172)
T 3u30_A 31 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR----------- 92 (172)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTC-------BTGGGTCCTTCEEEEEEC-----------
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccC-------CHhHcCCcccceeeeeec-----------
Confidence 57899999999999999999999999999999999999999999 999999999999999999
Q ss_pred Cchhhhhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 82 PSDDILKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 82 p~~~~~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
+++|+.++|+..+|++++++++ +|++|++ |+|+|+.|+|+++|++|+|++|++|||++
T Consensus 93 -----~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 93 -----LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp -----CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred -----ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 8899999999999999998887 8998886 99999999999999999999999999987
Q ss_pred e
Q 041424 145 S 145 (148)
Q Consensus 145 ~ 145 (148)
+
T Consensus 168 r 168 (172)
T 3u30_A 168 R 168 (172)
T ss_dssp -
T ss_pred e
Confidence 6
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.97 E-value=4.1e-30 Score=187.36 Aligned_cols=122 Identities=22% Similarity=0.230 Sum_probs=114.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE-E-cCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccc
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF-F-AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISV 79 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~-~-~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~ 79 (148)
++++++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+. +|++|||++|++++++.+.
T Consensus 13 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~-------tL~~y~i~~~~~l~l~~~~-------- 77 (159)
T 3rt3_B 13 NEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRV-------PLASQGLGPGSTVLLVVDK-------- 77 (159)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTS-------CGGGGTCCTTCEEEEEECC--------
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCC-------CHHHcCCCCCCEEEEEccC--------
Confidence 5789999999999999999999999999999999 9 799999999 9999999999999999981
Q ss_pred cCCchhhhhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEE
Q 041424 80 KAPSDDILKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVAC 142 (148)
Q Consensus 80 ~~p~~~~~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l 142 (148)
++++|+|+|+..+|++++++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+|
T Consensus 78 -------~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l 150 (159)
T 3rt3_B 78 -------SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFM 150 (159)
T ss_dssp -------CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred -------CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEE
Confidence 2577999999999999998887 8998875 999999999999999999999999999
Q ss_pred Eee
Q 041424 143 FIS 145 (148)
Q Consensus 143 ~l~ 145 (148)
+++
T Consensus 151 ~~r 153 (159)
T 3rt3_B 151 NLR 153 (159)
T ss_dssp EEC
T ss_pred EEe
Confidence 986
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.96 E-value=2.9e-28 Score=175.33 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=114.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccccC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISVKA 81 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~~~ 81 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++||++++++++++.+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~-------tL~~~~i~~~~~l~l~~~----------- 72 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR----------- 72 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEEC-----------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcc-------cHHHhccCCCCeeEEEee-----------
Confidence 47899999999999999999999999999999999999999999 999999999999999998
Q ss_pred Cchhhhhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 82 PSDDILKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 82 p~~~~~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
..+++.|+|+..+|+.+.++++ +|.+|++ |+|+|+.|+|+++|++|+|++|++|++++
T Consensus 73 -----~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 73 -----LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp -----CTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred -----cccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 7788999999999999888777 8888875 99999999999999999999999999998
Q ss_pred e
Q 041424 145 S 145 (148)
Q Consensus 145 ~ 145 (148)
+
T Consensus 148 r 148 (152)
T 3b08_A 148 R 148 (152)
T ss_dssp C
T ss_pred e
Confidence 6
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2e-19 Score=124.78 Aligned_cols=84 Identities=39% Similarity=0.562 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccccC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISVKA 81 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~~~ 81 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+.+
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~ygI~~gstI~l~~~----------- 81 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR-------TLSDYNIQRESTLHLVLR----------- 81 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTC-------BTTTTTCCSSCEEEEEEC-----------
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEE-----------
Confidence 57899999999999999999999999999999999999999999 999999999999999999
Q ss_pred Cchhhhhheeeeeee---eeeeeeeehhhh
Q 041424 82 PSDDILKLKVKIFVK---MLTEEIVKLKVK 108 (148)
Q Consensus 82 p~~~~~~~~i~I~Vk---~~~gk~~~l~v~ 108 (148)
++||++++++ ..+|++++++|+
T Consensus 82 -----~~GG~~~~~~~~~~~~g~~~~~~v~ 106 (114)
T 2kdi_A 82 -----LRGGSMGGAADEEELIRKAIELSLK 106 (114)
T ss_dssp -----CCSSCCCSSCSSSHHHHHHHHSSSH
T ss_pred -----cCCCceeeccccccccCceEEEEec
Confidence 8888888887 567888887765
No 5
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.74 E-value=5.9e-18 Score=113.11 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
++++++++|++||.+||++|++++|+||++|||+|+|+.|+|+. +|++|+|++|++++|..
T Consensus 32 kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~-------TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 32 KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHI-------SLEDYEVHDQTNLELYY 92 (93)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcC-------CHHHcCCCCCCEEEEEe
Confidence 68899999999999999999999999999999999999999999 99999999999999864
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=109.47 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++++++++
T Consensus 15 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~-------tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL-------PLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 7
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.73 E-value=8.6e-18 Score=111.25 Aligned_cols=62 Identities=23% Similarity=0.481 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|++|++|+++++
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK-------TAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS-------BTTTTTCCTTCEEEEECB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCC-------cHHHcCCCCCCEEEEEEE
Confidence 57899999999999999999999999999999999999999999 999999999999999999
No 8
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=7.3e-18 Score=113.49 Aligned_cols=81 Identities=38% Similarity=0.550 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccccC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISVKA 81 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~~~ 81 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||++++++|+++.+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~-------tL~~~gi~~g~~i~l~~~----------- 72 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR----------- 72 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEEC-----------
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCC-------CHHHcCCCCCCEEEEEEe-----------
Confidence 46889999999999999999999999999999999999999999 999999999999999999
Q ss_pred Cchhhhhheeeeeeeeeeeeeeeh
Q 041424 82 PSDDILKLKVKIFVKMLTEEIVKL 105 (148)
Q Consensus 82 p~~~~~~~~i~I~Vk~~~gk~~~l 105 (148)
.+||.+++.++.+|+.-.+
T Consensus 73 -----~~gG~~i~~~~v~~~~~~~ 91 (98)
T 1yx5_B 73 -----LRGGRDPNSSSVDKLAAAL 91 (98)
T ss_dssp -----CCCC---------------
T ss_pred -----CCCCCcCccccCCCchhhh
Confidence 7888889988888776544
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.70 E-value=2e-17 Score=108.65 Aligned_cols=62 Identities=23% Similarity=0.467 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 23 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~-------tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 23 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK-------TAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTS-------BGGGGTCCTTCEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 10
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.70 E-value=4.5e-17 Score=113.24 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=61.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCccc-------ccceeEEEeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKR-------ESTMQLLFCAI 72 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~-------~s~i~l~~~~~ 72 (148)
.|+++++++++||.+||++|+.++|+||++|||+|+|+.|+|++ +|++|||++ +++|||++|+.
T Consensus 12 tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~k-------TL~dy~I~~~ta~~q~~atl~Lvlr~~ 82 (118)
T 4ajy_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGK-------TLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTTTTTCCGGGSBTTBCEEEEEEECCS
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcC-------CHHHcCCCcCcccCCCCCEEEEEEecC
Confidence 37899999999999999999999999999999999999999999 999999999 99999999954
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=4.3e-17 Score=103.87 Aligned_cols=62 Identities=23% Similarity=0.481 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||++++++++++.+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~-------tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEK-------TAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 46889999999999999999999999999999999999999999 999999999999999998
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=3.2e-17 Score=107.86 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=59.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCee-cCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDR-LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~-L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+. +|++|||++|++|+++++
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~-------tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDL-------TVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSS-------BHHHHTCCTTSCEEEEEC
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcC-------CHHHcCCCCCCEEEEEEc
Confidence 578999999999999999999999999999999999999 99999 999999999999999886
No 13
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.6e-17 Score=112.67 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|+|++||.+||++|++++|+||++|+|+|+|+.|+|+. +|++|+|+++++| ++++
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~-------TL~~y~I~~gsti-~vl~ 90 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGK-------TLEEQGVAHNVKA-MVLE 90 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTS-------BHHHHTCCSSEEE-EEEC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCC-------cHHHcCCCCCCEE-EEEE
Confidence 46899999999999999999999999999999999999999999 9999999999999 4554
No 14
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=6.2e-17 Score=105.53 Aligned_cols=62 Identities=42% Similarity=0.674 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~-------tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTC-------BTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCC-------CHHHCCCCCCCEEEEEEe
Confidence 47899999999999999999999999999999999999999999 999999999999999999
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5e-17 Score=109.54 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 33 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 33 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTC-------BSGGGTCCTTEEEEEECB
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 16
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=7.5e-17 Score=106.69 Aligned_cols=62 Identities=45% Similarity=0.719 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||++++++|+++.+
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~-------tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS-------BSGGGTCCTTCEEEEEC-
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.68 E-value=4e-17 Score=105.47 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||+++++++|+|+++|+|+|+|+.|+|+. +|++|+++++++|+++.+
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~-------tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH-------TPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC-------CHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 18
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.68 E-value=5.9e-17 Score=112.85 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=60.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcc-------cccceeEEEee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVK-------RESTMQLLFCA 71 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~-------~~s~i~l~~~~ 71 (148)
+++++|++++||.+||++|+.++|+|+++|||+|+|+.|+|++ +|++|||+ .+++|+|++|.
T Consensus 13 ti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~-------TLsdy~I~~~~a~~q~~stL~L~lr~ 81 (118)
T 2fnj_B 13 TIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGK-------TLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BHHHHTCCTTTSBTTBCEEEEEEEBS
T ss_pred EEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCC-------CHHHcCcccccccCCCCCEEEEEecC
Confidence 6899999999999999999999999999999999999999999 99999999 79999999994
No 19
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=4.7e-17 Score=109.15 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=59.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCC-cccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNG-RLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~-~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ . +|++|||+++++|+|+.+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~-------tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYR-------NLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTS-------BHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcc-------cHHHCCCCCCCEEEEEEe
Confidence 688999999999999999999999999999999999999999 9 999999999999999998
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=1.1e-16 Score=101.94 Aligned_cols=62 Identities=48% Similarity=0.756 Sum_probs=59.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++|+++.+
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~-------tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTC-------BTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 46889999999999999999999999999999999999999999 999999999999999998
No 21
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=105.29 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=58.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+ +|+++|++.|
T Consensus 28 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 28 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK-------KLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BGGGGTC-TTEEEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCC-------cHHHcCC-CCcEEEEEEC
Confidence 57889999999999999999999999999999999999999999 9999999 8999999875
No 22
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=109.01 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEA-------TLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTS-------BHHHHTCCSSCEEEEECC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEe
Confidence 57889999999999999999999999999999999999999999 999999999999999998
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.2e-16 Score=104.05 Aligned_cols=62 Identities=47% Similarity=0.694 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~-------tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS-------BTGGGTCCTTCEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCC-------CHHHcCCCCCCEEEEEEE
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.67 E-value=1.1e-16 Score=106.94 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|.++++|+++++
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~-------tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEE
Confidence 57899999999999999999999999999999999999999999 999999999999999999
No 25
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.67 E-value=1.2e-16 Score=106.04 Aligned_cols=62 Identities=44% Similarity=0.714 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++|++++|
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~-------tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 28 THITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTC-------BTGGGTCCTTCEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcC-------cHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999987
No 26
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=5.3e-17 Score=110.11 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
++++++|+|++||.+||++|++++|+|+++|||+|+|+.|+|+. +|++|||+++++|+|..
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~-------TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHV-------SLGDYEIHDGMNLELYY 99 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSC-------BHHHHTCCTTEEEEEEC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCC-------CHHHcCCCCCCEEEEEe
Confidence 56899999999999999999999999999999999999999999 99999999999999864
No 27
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2e-16 Score=101.83 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=58.2
Q ss_pred EEEE-EcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLN-VEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~-v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++ +++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++++++.+
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~-------tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGH-------TLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTC-------BTTTTTCCTTCEEEEEEC
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 4898 99999999999999999999999999999999999999 999999999999999987
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.7e-17 Score=105.32 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+++++++|+++.+
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~-------tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWL-------GLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSS-------BHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCC-------CHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999999
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=107.36 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++|+++.+
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~-------tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL-------PLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTS-------BHHHHHCSTTCEEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEE
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 30
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-16 Score=109.48 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIK 73 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~ 73 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++|+++++...
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 12 EKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSK-------TVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTS-------BTTTTTCCTTCEEEEECCC--
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcC-------CHHHcCCCCCCEEEEEEcCCC
Confidence 57899999999999999999999999999999999999999999 999999999999999998543
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.66 E-value=2e-16 Score=109.00 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+. +|++|+|+++++|+++++
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 32
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.66 E-value=2.3e-16 Score=104.27 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCA 71 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~ 71 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+| +|++|||+.+.
T Consensus 16 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~-------tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 16 QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDK-------KLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BGGGGTC-TTEEEEEEECC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCC-------CHHHcCC-CCcEEEEEecC
Confidence 57899999999999999999999999999999999999999999 9999999 89999999983
No 33
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=9.5e-17 Score=120.33 Aligned_cols=72 Identities=44% Similarity=0.684 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeeeccccccC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKVLSISVKA 81 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~~~~~~~~ 81 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+++
T Consensus 116 kt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~-------tL~dygI~~gstI~Lvlr----------- 177 (189)
T 3q3f_A 116 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR----------- 177 (189)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTC-------BGGGGTCCTTCEEEECCC-----------
T ss_pred CEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCC-------CHHHCCCCCCCEEEEEEE-----------
Confidence 57899999999999999999999999999999999999999999 999999999999999999
Q ss_pred Cchhhhhheeeeeee
Q 041424 82 PSDDILKLKVKIFVK 96 (148)
Q Consensus 82 p~~~~~~~~i~I~Vk 96 (148)
++||..+|||
T Consensus 178 -----lrGG~~~fvk 187 (189)
T 3q3f_A 178 -----LRGGGQTFTK 187 (189)
T ss_dssp -----CCCCCCCCCC
T ss_pred -----cCCCCcceEe
Confidence 8888888775
No 34
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.66 E-value=3.6e-16 Score=100.08 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++|+++.+
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~-------tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQ-------TVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCC-------CHHHcCCCCCCEEEEEEc
Confidence 57899999999999999999999999999999999999999999 999999999999999876
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.66 E-value=1.1e-16 Score=107.88 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++++++.|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+++++
T Consensus 32 ~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~-------tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH-------TPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC-------CHHHHTCCTTCEEEEEES
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCC-------CHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999998
No 36
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.7e-16 Score=104.66 Aligned_cols=62 Identities=32% Similarity=0.437 Sum_probs=59.9
Q ss_pred eEEEE-EEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTL-NVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++ +|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|.++++|+++.+
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~-------tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY-------TLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSS-------BHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCC-------CHHHCCCCCCCEEEEEEe
Confidence 47899 599999999999999999999999999999999999999 999999999999999998
No 37
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.65 E-value=4.1e-16 Score=101.78 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhh---hCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEK---EGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+. +|++|||++|++|+++.+
T Consensus 16 ~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-------PIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTS-------BGGGGCCCTTSEEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCC-------CHHHcCCCCCCEEEEEEc
Confidence 46889999999999999999998 899999999999999999999 999999999999999987
No 38
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=3.7e-16 Score=106.78 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCc-ccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNV-KRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i-~~~s~i~l~~~ 70 (148)
.+++++|+|++||++||++|++++|+||++|||+|+|+.++|++ +|++||| ++|+++||++.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~-------TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQE-------TLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTC-------BTGGGTCCSTTCEEEEEEC
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcC-------cHHHcCCCCCCCEEEEEEE
Confidence 47999999999999999999999999999999999999999999 9999999 59999999986
No 39
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=100.58 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++|+++.+
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~-------tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGK-------RLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTS-------BGGGGTCCSSBCCEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 46889999999999999999999999999999999999999999 999999999999999987
No 40
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.3e-17 Score=106.45 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=57.6
Q ss_pred eEEEEEEc--CCCcHHHHHHHH-HhhhCCCCcccEEEEcCeecCCCcccccccccccCCCc-ccccceeEEEe
Q 041424 2 KTVTLNVE--KSETIKNLKGMV-HEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNV-KRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i-~~~s~i~l~~~ 70 (148)
++++++|+ +++||.+||++| ++.+|+|+++|||+|+|+.|+|+. +|++|+| ++|++|+++.+
T Consensus 12 ~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 12 PKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNL-------FLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp SCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTC-------BHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcC-------CHHHcCCCCCCCEEEEEcC
Confidence 34677655 999999999999 999999999999999999999999 9999999 79999999998
No 41
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=3.5e-16 Score=115.33 Aligned_cols=63 Identities=46% Similarity=0.727 Sum_probs=61.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCA 71 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~ 71 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|++|++||++.+.
T Consensus 11 k~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTS-------BGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcC-------cHHHcCCCCCCEEEEEEEe
Confidence 57899999999999999999999999999999999999999999 9999999999999999993
No 42
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=5.2e-16 Score=104.97 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHH-HhhhCCCCcccEEEEcCeecCCCcccccccccccCCCc-ccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMV-HEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNV-KRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i-~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i-~~~s~i~l~~~ 70 (148)
+++++++++||++||++| ++.+|+|+++|||+|+|+.|+|+. +|++|+| ++|++|+++++
T Consensus 34 i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~-------tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 34 IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNL-------FLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTC-------BGGGSCCBTTBCEEEEEEC
T ss_pred EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcC-------CHHHcCcCCCCCEEEEEEe
Confidence 444677999999999999 889999999999999999999999 9999999 99999999987
No 43
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=7.3e-16 Score=101.43 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=59.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++|+++..
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~-------tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETS-------TLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTC-------BTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcC-------CHHHCCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999998865
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=4.5e-16 Score=112.81 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|++|+++|++++
T Consensus 92 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~-------tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 92 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL-------PLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999999
No 45
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.64 E-value=3.5e-16 Score=103.42 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=56.9
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEE-------cCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFF-------AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~-------~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+...+++++||.+||++|+.++|+||++|||+| .|+.|+|++ +|++|||++|++|||+-+
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~-------tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDK-------QLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTS-------BGGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCC-------CHHHCCCCCCCEEEEEeC
Confidence 4678899999999999999999999999999996 478899999 999999999999999876
No 46
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.63 E-value=2.8e-16 Score=108.85 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|||+++
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~-------tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSN-------SLAYYNMASGAVIHLALK 107 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTS-------BHHHHTCCSSCEEEEEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCC-------CHHHCCCCCCCEEEEEEE
Confidence 47899999999999999999999999999999999999999999 999999999999999999
No 47
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.9e-16 Score=105.58 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=58.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhh--CCCCcccEEEEcCeecCCCcccccccccccCC--CcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKE--GTSEDIQDLFFAGDRLMNGRLIDYEDMALASP--NVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~--gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~--~i~~~s~i~l~~~ 70 (148)
++++++++++||.+||++|++.+ |+|+++|||+|+|+.|+|+. +|++| +|+++++|||+.+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~-------tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ-------CLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSS-------CHHHHSCSSSCSEEEEEECC
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcC-------CHHHHhcCCCCCCEEEEEeC
Confidence 57778889999999999999999 99999999999999999999 99999 9999999999988
No 48
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=4.1e-16 Score=107.32 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=59.9
Q ss_pred eEEEEEEcC-CCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEK-SETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+++
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~-------tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNM-------SLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTS-------BTTTTTCSSSCEEEEECS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCC-------cHHHCCCCCCCEEEEEEE
Confidence 468899998 99999999999999999999999999999999999 999999999999999998
No 49
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=104.64 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+++++++|+++.+
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSC-------BTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 46889999999999999999999999999999999999999999 999999999999999998
No 50
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.5e-15 Score=101.71 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhh---hCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEK---EGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+. +|++|||++|++|+++.+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-------ALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTS-------BGGGGTCCSSSEEEEEES
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcC-------cHHHCCCCCCCEEEEEEe
Confidence 46899999999999999999999 899999999999999999999 999999999999999987
No 51
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=4.9e-17 Score=104.10 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++||+++|++++++.+
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~-------tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHL-------TVQNCDLEQQSIVHIVQR 72 (76)
Confidence 46789999999999999999999999999999999999999999 999999999999999998
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.61 E-value=9.1e-16 Score=112.78 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+. +|++|+|++|++|||+++
T Consensus 107 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~-------tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 107 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTS-------BSGGGTCCTTCEEEECC-
T ss_pred cceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCC-------cHHHhCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999999
No 53
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.7e-16 Score=104.63 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|||+.+
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~-------tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQD-------ILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTS-------CHHHHTCCTTEEEECCBC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcC-------CHHHCCCCCCCEEEEEEe
Confidence 57889999999999999999999999999999999999999999 999999999999999988
No 54
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=102.27 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++|+|+.+
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQD-------TLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTC-------CTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcC-------cHHHcCCCCCCEEEEEEc
Confidence 46889999999999999999999999999999999999999999 999999999999999987
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=9.6e-16 Score=104.04 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCC-cccccccccccCCCcccccceeEEEeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNG-RLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~-~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ . +|++|+|+++++|+|+.+..
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~-------tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC-------SLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSS-------BHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcc-------cHHHCCCCCCCEEEEEECCC
Confidence 5788999999999999999999999999999999999999887 7 89999999999999998844
No 56
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.5e-15 Score=102.15 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEc--Ce---ec-CCCcccccccccccCCCcccccceeEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFA--GD---RL-MNGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~--g~---~L-~d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
+++++++++++||++||++|+.++|+||++|||+|. |+ .| +|++ +|++|||++|++|+|+
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~-------tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDA-------QLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTS-------BHHHHCCSSSCEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCC-------CHhHCCcCCCCEEEEE
Confidence 368999999999999999999999999999999998 44 45 8889 9999999999999986
No 57
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.2e-16 Score=105.81 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||++|++|+|+.+
T Consensus 38 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 38 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQ-------TVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTS-------BTTTTTCCTTEEEEECCC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcC-------cHHHCCCCCCCEEEEEeC
Confidence 35678899999999999999999999999999999999999999 999999999999999876
No 58
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.1e-15 Score=105.22 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+.+
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQD-------TLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTS-------CGGGTTCSSSEEEEEEEC
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEec
Confidence 56889999999999999999999999999999999999999999 999999999999999998
No 59
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.7e-15 Score=103.45 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+. +|++|||++|++|||+.+
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKM-------KFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTS-------HHHHCCCSSSCEEEEECC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCC-------cHHHcCCCCCCEEEEEEe
Confidence 57889999999999999999999999999999999999999999 999999999999999988
No 60
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.8e-15 Score=102.43 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=59.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||+++++|+++.+
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD-------SLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTS-------BHHHHTCCTTCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcC-------cHHHCCCCCCCEEEEEEc
Confidence 3689999999999999999999999999999999999999999 999999999999999998
No 61
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.2e-15 Score=103.06 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=55.7
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe---e----cCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD---R----LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~---~----L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.++++++|++||++||++|+.++|+||++|||+|.|+ . ++|++ +|++|+|++|++|+|+-.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~-------tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSR-------PLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGS-------CHHHHCCCSCCEEEEEEC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcC-------CHHHCCCCCCCEEEEEeC
Confidence 5889999999999999999999999999999999883 3 47888 999999999999998754
No 62
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=6.8e-15 Score=102.29 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=57.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHh------hhCC--CCcccEEEEcCeecCCCcccccccccccCCCcccc--cceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHE------KEGT--SEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRE--STMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~--s~i~l~~~ 70 (148)
++++++|++++||.+||++|++ ++|+ |+++|||+|+|+.|+|+. +|++|+|+.+ +++||+++
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~-------TL~~y~I~~~~~~tlhLvlr 98 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNV-------TLGALKLPFGKTTVMHLVAR 98 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSC-------BTTTTTCCSSCEEEEEEEEC
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCC-------cHHHcCCCCCCceEEEEEcc
Confidence 5799999999999999999999 6785 699999999999999999 9999999866 67898888
No 63
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=4.1e-15 Score=104.59 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=56.2
Q ss_pred EE-EEEEcCCCcHHHHHHHH-----HhhhCCCC--cccEEEEcCeecCCCcccccccccccCCCcccc------cceeEE
Q 041424 3 TV-TLNVEKSETIKNLKGMV-----HEKEGTSE--DIQDLFFAGDRLMNGRLIDYEDMALASPNVKRE------STMQLL 68 (148)
Q Consensus 3 ~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~------s~i~l~ 68 (148)
++ +++++|++||.+||++| ++.+|+|+ ++|||+|+|+.|+|+. +|++|+|+.+ +++||+
T Consensus 28 ~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~-------TLsdy~I~~~~~~~~v~tmhlV 100 (126)
T 1se9_A 28 DIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSK-------TVKDYRSPVSNLAGAVTTMHVI 100 (126)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTS-------BGGGGSCCTTSCTTCCEEEEEE
T ss_pred EEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCC-------cHHHcCCCcCCccCCcEEEEEE
Confidence 45 79999999999999999 56789997 8999999999999999 9999999998 679999
Q ss_pred Ee
Q 041424 69 FC 70 (148)
Q Consensus 69 ~~ 70 (148)
++
T Consensus 101 lr 102 (126)
T 1se9_A 101 IQ 102 (126)
T ss_dssp EC
T ss_pred ec
Confidence 88
No 64
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.56 E-value=2.2e-16 Score=111.32 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+. +|++|||.+|++|+|+++
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCC-------chhhhccCCCCEEEEEEE
Confidence 46889999999999999999999999999999999999999999 999999999999999999
No 65
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.55 E-value=3.6e-15 Score=99.00 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=59.4
Q ss_pred eEEEE-EEcCCCcHHHHHHHHHhhhCCCCcccEEE---EcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTL-NVEKSETIKNLKGMVHEKEGTSEDIQDLF---FAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~Q~L~---~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+. +|++|+|+++++|+|+..
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~-------~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDV-------KLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTS-------BHHHHTCCTTEEEEEECC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCC-------CHHHcCCCCCCEEEEEec
Confidence 56888 99999999999999999999999999999 9999999999 999999999999999887
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.55 E-value=8.5e-15 Score=104.63 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++||++++++|+++.+
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~-------tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTS-------BTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 47899999999999999999999999999999999999999999 999999999999999998
No 67
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=102.05 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=61.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIK 73 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~ 73 (148)
.++++++++.||++||++++...++|+++|+|+|+|+.|.|+. +|++|||++|.+|||+.++..
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~e-------TL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNE-------TLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSC-------CHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcc-------hHHHcCCCCCCEEEEEEecCC
Confidence 5889999999999999999999999999999999999999999 999999999999999999543
No 68
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=101.30 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhh-hCCCC-cccEEEEcCeecCCCcccccccccccCC--CcccccceeEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEK-EGTSE-DIQDLFFAGDRLMNGRLIDYEDMALASP--NVKRESTMQLL 68 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~-~gip~-~~Q~L~~~g~~L~d~~~~~~~~~~L~~~--~i~~~s~i~l~ 68 (148)
++++++++++||.+||++|++. +|+|| ++|||+|+|+.|+|+. +|++| +|+++++|||+
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~-------tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHL-------QLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTS-------BTHHHHTTTCSEEEEEEC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCC-------CHHHHhcCCCCCCEEEeC
Confidence 5789999999999999999996 57664 9999999999999999 99999 99999999974
No 69
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=6.6e-15 Score=100.42 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=59.9
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+.+..
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~-------tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD-------SLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTS-------CHHHHTCCTTEEEEEEECCC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcC-------cHHHcCCCCCCEEEEEEcCC
Confidence 3689999999999999999999999999999999999999999 99999999999999999844
No 70
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.54 E-value=5.1e-16 Score=112.70 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|+++
T Consensus 11 ~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~-------tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccC-------cHHHcCCCCCCEEEEEee
Confidence 46889999999999999999999999999999999999999999 999999999999999999
No 71
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=100.73 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=57.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEE--cCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFF--AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~--~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++++||||++|+|+| .|+ |+|+. +|++|+|++|+++||+++
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~-------tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDST-------VLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTS-------BHHHHCCCSEEEEEECCS
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcC-------CHHHcCCCCCCEEEEEec
Confidence 57899999999999999999999999999999986 555 99999 999999999999999887
No 72
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.53 E-value=7.8e-15 Score=103.21 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=57.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHh------hhCCC--CcccEEEEcCeecCCCcccccccccccCCCccccc--ceeEEEee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHE------KEGTS--EDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRES--TMQLLFCA 71 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s--~i~l~~~~ 71 (148)
++++++|+|++||++||++|++ ++|+| +++|||+|+|+.|+|+. +|++|+|+.++ ++||++++
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~-------TL~~y~I~~~~~~tlhlv~r~ 100 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNV-------TLGALKLPFGKTTVMHLVARE 100 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSC-------BTGGGCCCTTSEEEEEEEECS
T ss_pred CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCC-------cHHHcCCCCCCceEEEEEecC
Confidence 5789999999999999999999 78984 89999999999999999 99999999766 78888883
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=1.3e-14 Score=96.44 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=57.9
Q ss_pred eEEEEEEcCC-----CcHHHHHHHHHhhhCCCCcccEEEEcCeecCC-CcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKS-----ETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMN-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +. +|++|+|+++++|+|+.+
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~-------~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMET-------PLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSS-------BHHHHTCCSSEEEEEESC
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcc-------cHHHCCCCCCCEEEEEec
Confidence 4678999995 99999999999999999999999999999988 66 899999999999999887
No 74
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=2.2e-14 Score=96.08 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=55.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcC---ee----cCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAG---DR----LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g---~~----L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++++++++||++||++|+.++|+|+++|||+|.| +. ++|+. +|++|||++|++||++-.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~-------tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDA-------LLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSS-------BTTSSSCCTTCEEEEBCC
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcC-------CHhHCCCCCCCEEEEEEC
Confidence 478899999999999999999999999999999987 43 57888 999999999999998764
No 75
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=2.2e-14 Score=96.41 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=58.3
Q ss_pred eEE-EEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeee
Q 041424 2 KTV-TLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 2 ~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
+++ ++++++++||.+||++|++.+|+|+++|+|+|.|+.|.|+ +|++|||+++++|+|+..+.
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~--------tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--------DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--------CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC--------CHHHCCCCCCCEEEEEecch
Confidence 567 5999999999999999999999999999999999999875 89999999999999998743
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=6.9e-15 Score=98.66 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=57.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++++++++++||.+||++|++.+|+|+++|+|+|.|+.| |+. +|++|+|+++++|+|+..
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~-------tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDK-------TLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSS-------BHHHHCCCTTEEEEECCS
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcC-------cHHHCCCCCCCEEEEEec
Confidence 5788999999999999999999999999999999999999 677 999999999999999876
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=3.6e-15 Score=102.00 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=57.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCc---------------ccEEEEcCeecC-CCcccccccccccCCCcccccce
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSED---------------IQDLFFAGDRLM-NGRLIDYEDMALASPNVKRESTM 65 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---------------~Q~L~~~g~~L~-d~~~~~~~~~~L~~~~i~~~s~i 65 (148)
++++++|++++||.+||++|++++|+|+. +|+|+|+|+.|. |+. +|++|||+++++|
T Consensus 18 ~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~-------tL~dygI~~g~~l 90 (105)
T 1v2y_A 18 EVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK-------KLRDYGIRNRDEV 90 (105)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS-------BHHHHTCCSSEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcC-------CHHHcCCCCCCEE
Confidence 57999999999999999999999999984 569999999996 568 9999999999999
Q ss_pred eEEEe
Q 041424 66 QLLFC 70 (148)
Q Consensus 66 ~l~~~ 70 (148)
|++.+
T Consensus 91 ~lv~~ 95 (105)
T 1v2y_A 91 SFIKK 95 (105)
T ss_dssp EEEEC
T ss_pred EEEeh
Confidence 99998
No 78
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=6.2e-14 Score=93.58 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCC-cccccccccccCCCcccccceeEEEeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNG-RLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~-~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
++++++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ . +|++|+|+++++|||+.+..
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~-------tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPAR-------TLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSC-------BTTTTTCCTTEEEEEECCCC
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcC-------CHHHcCCCCCCEEEEEECCC
Confidence 468899999999999999999998 8999999999999999 9 99999999999999999843
No 79
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=3e-14 Score=97.43 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=56.9
Q ss_pred eEEEEE--------EcCC-CcHHHHHHHHHhhh--CCCCcc-cEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 2 KTVTLN--------VEKS-ETIKNLKGMVHEKE--GTSEDI-QDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 2 ~~~~l~--------v~~~-~tV~~lK~~i~~~~--gip~~~-Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
++++++ |+++ +||.+||++|++.+ |+|+++ |+|+|+|+.|+|+. +|++|+++++++|||+.
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~-------tL~~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQ-------TLDFYGIQPGSTVHVLR 98 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTC-------BHHHHTCCTTCEEEEEE
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCC-------cHHHcCCCCCCEEEEEe
Confidence 356777 4454 99999999999999 999999 99999999999999 99999999999999998
Q ss_pred e
Q 041424 70 C 70 (148)
Q Consensus 70 ~ 70 (148)
+
T Consensus 99 ~ 99 (107)
T 1x1m_A 99 K 99 (107)
T ss_dssp S
T ss_pred C
Confidence 8
No 80
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=96.72 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=55.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcC---e---e-cCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAG---D---R-LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g---~---~-L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++++++++||++||++|+..+|+||++|||+|.| + . ++|+. +|++|||++|++|||+..
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~-------tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAK-------SLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSS-------BTTTTTCCSSEEEEEEEC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcC-------CHHHCCCCCCCEEEEEeC
Confidence 478899999999999999999999999999999987 3 3 47888 999999999999999875
No 81
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=91.29 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=52.1
Q ss_pred EE-EEcCCCcHHHHHHHHHhh-hCCCCcccEEEEc--CeecCCCcccccccccccCCCcccccceeE
Q 041424 5 TL-NVEKSETIKNLKGMVHEK-EGTSEDIQDLFFA--GDRLMNGRLIDYEDMALASPNVKRESTMQL 67 (148)
Q Consensus 5 ~l-~v~~~~tV~~lK~~i~~~-~gip~~~Q~L~~~--g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l 67 (148)
++ +|+|++||.+||++|++. .|+||++|||+|. |+.|+|+. +|++|+|.++++|++
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~-------tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDED-------VLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTC-------BTTTSSCCSEEEEEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCC-------CHHHcCCCCCCEEEE
Confidence 57 899999999999999994 8999999999976 89999999 999999999998764
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.40 E-value=4.4e-13 Score=106.96 Aligned_cols=62 Identities=47% Similarity=0.745 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+. +|++|+|+++++|+|++|
T Consensus 244 k~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~-------TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 244 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-------TLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTS-------BTGGGTCCTTCEEEEEC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 57899999999999999999999999999999999999999999 999999999999999987
No 83
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=88.77 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=51.7
Q ss_pred cccccceeEEEeeeeeccccccCCchhhhhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCe
Q 041424 59 VKRESTMQLLFCAIKVLSISVKAPSDDILKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGM 121 (148)
Q Consensus 59 i~~~s~i~l~~~~~~~~~~~~~~p~~~~~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~ 121 (148)
..++++++++.+ ....|+|+||..+|+.+.++|+ +|++|++ |+|+|+
T Consensus 2 ~~~~~~~~~~~~----------------~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk 65 (88)
T 4eew_A 2 MEPNDSTSTAVE----------------EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR 65 (88)
T ss_dssp -----------------------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCCCCceEEeec----------------CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE
Confidence 345666666665 4456899999999999888777 8888885 999999
Q ss_pred eeCCCCchhhhCCCCCCEEEEEee
Q 041424 122 KLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 122 ~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+.+|++||| +|++|||++|
T Consensus 66 ~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 66 VLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp ECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred ECCCCCcHHHcCC-CCcEEEEEEC
Confidence 9999999999999 8999999986
No 84
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.38 E-value=3.8e-14 Score=105.96 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++|+|++++||.+||++|++.+|+|+++|+|+|+|++|+|+. +|+ ++++|||+++
T Consensus 11 ktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~-------TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 11 ETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTE-------LVT-----DDVTYYLSLK 67 (189)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCC-------ccc-----CCCEEEEEEe
Confidence 47899999999999999999999999999999999999999999 998 8999999999
No 85
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.36 E-value=5.4e-13 Score=107.17 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE---EcCeecCCCcccccccccccCCCcccccceeEEEeeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF---FAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIK 73 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~---~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~ 73 (148)
+++++++++++||++||++|++.+||||++|+|+ |+|+.|.|+. +|++|||++|++|+|+..+..
T Consensus 15 ~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~-------~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 15 KEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNV-------KISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTS-------BTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccc-------cHHHcCCCCCCEEEEEccchh
Confidence 5789999999999999999999999999999999 8999999999 999999999999999987543
No 86
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.32 E-value=8.7e-13 Score=90.17 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred EEEEEEc-CCCcHHHHHHHHHhhhCCCCcccEEEEcCe-----------e----cCCCcccccccccccCCCccccccee
Q 041424 3 TVTLNVE-KSETIKNLKGMVHEKEGTSEDIQDLFFAGD-----------R----LMNGRLIDYEDMALASPNVKRESTMQ 66 (148)
Q Consensus 3 ~~~l~v~-~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~-----------~----L~d~~~~~~~~~~L~~~~i~~~s~i~ 66 (148)
+.+++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+. +|++|||++|++||
T Consensus 18 ~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~-------tL~~~gi~~G~~L~ 90 (107)
T 1wf9_A 18 LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNL-------RISSLNLAHGSMVY 90 (107)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTC-------BGGGTCCCTTCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCC-------CHHHCCCCCCCEEE
Confidence 3578999 999999999999999999999999998888 4 47888 99999999999999
Q ss_pred EEEe
Q 041424 67 LLFC 70 (148)
Q Consensus 67 l~~~ 70 (148)
|...
T Consensus 91 l~~~ 94 (107)
T 1wf9_A 91 LAYE 94 (107)
T ss_dssp CCCS
T ss_pred EEeC
Confidence 9876
No 87
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.30 E-value=1.6e-12 Score=86.69 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=51.4
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEE
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACF 143 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~ 143 (148)
..|+|+||+.+|++++++++ +|++|++ |+|+|++|+|+.||++|+|++|++|+|.
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 45899999999999999988 9999986 9999999999999999999999999985
No 88
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=82.83 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=51.9
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+||..+|+++.++|+ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++++
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 34889999999999988877 8888875 999999999999999999999999999986
No 89
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.30 E-value=2e-12 Score=105.52 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHh---hhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccce-eEEEee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHE---KEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTM-QLLFCA 71 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i-~l~~~~ 71 (148)
++++++|++++||.+||++|+. ++|+|+++|||+|+|+.|+|+. +|++|+|+++++| +|+.+.
T Consensus 18 k~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~-------tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 18 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-------PIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp EEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSS-------BTTTTCCCTTSCEEEEEECC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcC-------CHHHcCCCCCCEEEEEEecC
Confidence 5789999999999999999999 6789999999999999999999 9999999999999 555554
No 90
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.28 E-value=2.2e-12 Score=85.33 Aligned_cols=59 Identities=29% Similarity=0.475 Sum_probs=53.4
Q ss_pred hhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 87 LKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 87 ~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
....|+|+||..+|+++.++|+ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++++
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 3456999999999999988877 8988886 999999999999999999999999999986
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.4e-11 Score=82.48 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++.+.|.+++++..|+++.+++.|+|+++||++|.|++|.++. |.++|++.++++|+++.+
T Consensus 18 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~-------Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 18 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD-------TPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC-------CTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 46899999999999999999999999999999999999999999 999999999999999998
No 92
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=4.6e-12 Score=81.11 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred heeeeeeeeeeeeee-ehh-hh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIV-KLK-VK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~-~l~-v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+|+..+|+.+ .++ |+ +|++|++ |+|+|+.|+|+++|++|||++|++|+++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 468899999989885 777 66 8888886 999999999999999999999999999986
No 93
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.22 E-value=9.2e-12 Score=81.97 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=50.4
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+||..+|+++.++|+ +|++|++ |+|+|+.|+|+.+|++|+|++|++|+|+++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 578999999999988877 8888885 999999999999999999999999999986
No 94
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.22 E-value=6.8e-12 Score=84.89 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=51.3
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
..|+|+||+.+|+++.++|+ ||++|++ |+|+|+.|+|++||.+|+|++|++|+|+-
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 34899999999999998887 9999986 99999999999999999999999999873
No 95
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.22 E-value=8.4e-12 Score=81.70 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=51.6
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCee-eCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMK-LKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~-L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
-|+|+|+..+|+++.++|+ +|++|++ |+|+|+. |+|+++|++|||++|++|+|+++
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 4889999999999988877 9999886 9999999 99999999999999999999875
No 96
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.20 E-value=1.2e-11 Score=79.39 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=50.2
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|++.+|+.+.++|+ +|+.+++ |+|+|+.|+|++||++|+|++||+|+++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 678999989998888877 8888875 999999999999999999999999999986
No 97
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.20 E-value=1.7e-11 Score=81.47 Aligned_cols=56 Identities=32% Similarity=0.549 Sum_probs=50.9
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
||+|+|+..+|+.+.++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 5889999999999888877 8888886 999999999999999999999999999986
No 98
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.19 E-value=1.4e-11 Score=82.57 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=52.9
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
...|+|+|++.+|+.+.++|+ ||+.|++ |+|+|+.|+|++||++|+|++|++|+++++
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 346999999999999988887 8888876 999999999999999999999999999986
No 99
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.4e-11 Score=83.94 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=50.5
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|+|+||..+|+.+.++|+ ||++|++ |+|+|+.|+|+++|++|||++|++|+|+++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 678999999999988887 8988886 9999999999999999999999999999863
No 100
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=1.8e-11 Score=80.58 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=50.7
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
.||+|+|+..+|+++.++++ +|++|++ |+|+|+.|+|+.+|++|+|++|++|+++++-
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 57999999999999988877 8888876 9999999999999999999999999999863
No 101
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.18 E-value=1.8e-11 Score=80.45 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=51.1
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
.|+|+||..+|+++.++|+ ||++|++ |+|+|+.|+|+++|++|+| +|++|||+++.
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 4889999999999988877 8888886 9999999999999999999 89999999874
No 102
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.17 E-value=1.9e-11 Score=79.81 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=52.0
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+|+..+|+.+.++|+ +|++|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 45899999999999888877 8888886 999999999999999999999999999876
No 103
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.17 E-value=2.8e-11 Score=81.60 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=50.6
Q ss_pred hhheeeeeeeeeeeeeeehhh--h-------Hhhhh-he----------eeecCeeeCCCCchhhhCC-CCCCEEEEEee
Q 041424 87 LKLKVKIFVKMLTEEIVKLKV--K-------VLLTI-RD----------LFCTGMKLKDCKTLACYGV-KDDRGVACFIS 145 (148)
Q Consensus 87 ~~~~i~I~Vk~~~gk~~~l~v--~-------lK~~i-~e----------L~f~g~~L~d~~tL~~y~I-~~gstI~l~l~ 145 (148)
..+.|+|+||+.+|+++++++ . +|++| ++ |+|+|+.|+|+.+|++|+| ++|++|+|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 446699999999999877744 2 99998 53 9999999999999999999 99999999986
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=6.2e-11 Score=79.35 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=52.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcC-------eec-CCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAG-------DRL-MNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g-------~~L-~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+...+++++||++||.+|+..+|+|+..|+|+|.+ ..| +|.. +|++|++.+|++||+...
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~-------~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQ-------PLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSS-------BSGGGTCCTTCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcc-------cHhhcCCCCCCEEEEEec
Confidence 456778899999999999999999999999999873 225 4556 999999999999998865
No 105
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.16 E-value=3.2e-11 Score=76.24 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=49.4
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|+|+|+..+|+.+.++++ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++++-
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 568888888888877776 8888875 9999999999999999999999999999874
No 106
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.1e-11 Score=80.45 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=49.3
Q ss_pred eeeeeeeeeeeeeehhhh---------Hhhhh-he----------eeecCeeeCCCCchhhhCC-CCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK---------VLLTI-RD----------LFCTGMKLKDCKTLACYGV-KDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~---------lK~~i-~e----------L~f~g~~L~d~~tL~~y~I-~~gstI~l~l~ 145 (148)
|+|+||+.+|++++++|+ +|++| ++ |+|+|+.|+|+.+|++|+| ++|++|++.++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 679999999998887643 99999 64 9999999999999999999 79999999876
No 107
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.6e-11 Score=81.33 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=51.9
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
...|+|+||..+|+.+.++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+|+++
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 345899999999999988887 8888886 999999999999999999999999999986
No 108
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.15 E-value=4.3e-11 Score=78.42 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=52.9
Q ss_pred EEEE-EcCCCcHHHHHHHHHhhhCCCCcccEEEEc--CeecC---CCcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLN-VEKSETIKNLKGMVHEKEGTSEDIQDLFFA--GDRLM---NGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~-v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~--g~~L~---d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
..++ +++++||.+||++|++.+|+|+++|+|+|+ ++.|. ++. +|++|||.+|++|++...
T Consensus 12 ~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~-------tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 12 HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDI-------TLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSC-------BTTTSSCCTTCEEECCCC
T ss_pred EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCC-------CHHHcCCCCCCEEEEEeC
Confidence 3466 899999999999999999999999999987 46764 577 999999999999998765
No 109
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.8e-11 Score=82.80 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=48.8
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
+.|+|+. +|+.+.++|+ +|++|++ |+|+|+.|+|+.+|++|||++|++|+|+.++
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5667776 8888888877 8988886 9999999999999999999999999999874
No 110
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=1.5e-10 Score=77.05 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|+++++++|.|++|.++. |.++|++.+|++|+++..
T Consensus 16 ~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~-------Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 16 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD-------TPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTC-------CTTTTTCCTTEEEEEEEC
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 46899999999999999999999999999999999999999999 999999999999999988
No 111
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=79.57 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=50.8
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+|+..+|+.+.++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+++++
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 5789999988888888777 8988886 999999999999999999999999999876
No 112
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.12 E-value=2.3e-10 Score=76.30 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|+++++++|.|++|.++. |.++|++.++++|+++..
T Consensus 28 ~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~-------Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 28 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD-------TPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTC-------CTTTTTCCTTEEEEEEEC
T ss_pred CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEee
Confidence 45889999999999999999999999999999999999999999 999999999999999987
No 113
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.12 E-value=5.6e-11 Score=76.91 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=49.9
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+..+|+++.++++ +|++|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 778899888888888777 8888875 999999999999999999999999999986
No 114
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.11 E-value=7.9e-11 Score=74.39 Aligned_cols=55 Identities=33% Similarity=0.561 Sum_probs=48.6
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+..+|+.+.++++ +|+.|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 568888888888777766 8888875 999999999999999999999999999886
No 115
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.11 E-value=2.9e-10 Score=72.20 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
+.+.+.|.+++++..|+.+.+++.|+|+++++++|.|++|.++. |.++|++.+|++|+++
T Consensus 12 ~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~-------Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 12 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD-------TPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTC-------CTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEE
Confidence 46899999999999999999999999999999999999999999 9999999999999985
No 116
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.11 E-value=8.8e-11 Score=76.14 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=49.5
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe-------------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD-------------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e-------------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
+..|+|+|+..+|+.+.++|+ +|++|++ |+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 356889999988888887776 6666542 9999999999999999999999999999863
No 117
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.10 E-value=6.3e-11 Score=77.23 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=51.7
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
+.|+|+|+..+|+.+.++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+++++-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 45889999988888887777 8888876 9999999999999999999999999999863
No 118
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=76.09 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=50.0
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+|+..+|+.+.++++ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 34788888888888777776 8888876 999999999999999999999999999875
No 119
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.68 E-value=9.9e-12 Score=79.07 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=49.2
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+..+|+++.++++ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 578889888988888777 8888876 999999999999999999999999999876
No 120
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.09 E-value=7.9e-11 Score=78.29 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=48.3
Q ss_pred hhhhhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 84 DDILKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 84 ~~~~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
+..+...|+|+||. |+.+.++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+|+++
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 33355668999998 788887777 8888886 999999999999999999999999999986
No 121
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.09 E-value=7.1e-11 Score=80.56 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=49.1
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe-------------------------eeecCeeeC-CCCchhhhCCCC
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD-------------------------LFCTGMKLK-DCKTLACYGVKD 136 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e-------------------------L~f~g~~L~-d~~tL~~y~I~~ 136 (148)
.|.|+|++.+|++++++|. ||+.|++ |+|+|+.|. |++||++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 3899999999999999888 6666553 889999996 679999999999
Q ss_pred CCEEEEEee
Q 041424 137 DRGVACFIS 145 (148)
Q Consensus 137 gstI~l~l~ 145 (148)
|++||++++
T Consensus 87 g~~l~lv~~ 95 (105)
T 1v2y_A 87 RDEVSFIKK 95 (105)
T ss_dssp SEEEEEEEC
T ss_pred CCEEEEEeh
Confidence 999999986
No 122
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.08 E-value=1.4e-10 Score=73.65 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=47.8
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+. +|+.+.++++ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6788888 7888877766 8888875 999999999999999999999999999876
No 123
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.08 E-value=1e-10 Score=75.56 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=49.6
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+..+|+++.++++ +|++|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 778888888888887776 8888875 999999999999999999999999999986
No 124
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.08 E-value=8.1e-11 Score=80.04 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=52.3
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
..|+|+||..+|+.+.++|. ||.+|++ |+|+|+.|+|+++|++|||++|++|+|+++.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45899999999999888777 8988875 9999999999999999999999999999864
No 125
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=1.4e-10 Score=76.02 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=51.0
Q ss_pred heeeeeeeeeee-eeeehh-hh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTE-EIVKLK-VK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~g-k~~~l~-v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
+.|+|+|+..+| +++.++ |+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+|+++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 458899999888 688884 76 8888876 9999999999999999999999999999874
No 126
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.07 E-value=1.3e-10 Score=77.59 Aligned_cols=57 Identities=23% Similarity=0.420 Sum_probs=49.7
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCC-CchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDC-KTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~-~tL~~y~I~~gstI~l~l~ 145 (148)
...|+|+||..+| ++.++|+ ||++|++ |+|+|+.|+|+ ++|++|||++|++|+|+++
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 3458899998877 6777666 9998886 99999999999 9999999999999999986
No 127
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.06 E-value=1.2e-10 Score=80.98 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=46.4
Q ss_pred eeeeeeeeeee-eeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCC-------CCCEEEEEee
Q 041424 91 VKIFVKMLTEE-IVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVK-------DDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk-~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~-------~gstI~l~l~ 145 (148)
|.++++...++ ++.++|+ +|++|++ |+|+|+.|+|++||++|||+ .++||+|+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34566665665 4777776 9999986 99999999999999999999 7999999998
No 128
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.05 E-value=1.9e-10 Score=76.88 Aligned_cols=56 Identities=32% Similarity=0.532 Sum_probs=49.8
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|+|+|+..+|+.+.++|+ +|++|++ |+|+|+.|+|+.+|++|||++|++|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 578888888888877776 8888875 9999999999999999999999999999875
No 129
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=1.6e-10 Score=76.82 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=51.2
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe-------eeecCeeeCCC-CchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD-------LFCTGMKLKDC-KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e-------L~f~g~~L~d~-~tL~~y~I~~gstI~l~l~~ 146 (148)
..|+|+||..+|+.+.++|+ ||++|++ |+|+|+.|+|+ ++|++|+|++|++|||+++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhCcCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 34889999888888887777 8888874 99999999999 99999999999999999864
No 130
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.04 E-value=3.1e-10 Score=77.78 Aligned_cols=57 Identities=33% Similarity=0.567 Sum_probs=52.2
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+||..+|+.+.++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+|+++
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 46899999999999988877 8888875 999999999999999999999999999986
No 131
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=2.3e-10 Score=76.25 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=48.0
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe-------------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD-------------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e-------------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|+|+||..+|+.+.++|+ +|++|++ |+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 578889888888887776 6666542 9999999999999999999999999999864
No 132
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.03 E-value=2.2e-10 Score=84.19 Aligned_cols=55 Identities=33% Similarity=0.560 Sum_probs=50.9
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+||+.+|+++.++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|||+++
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 578999999999998887 8998886 999999999999999999999999999986
No 133
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.03 E-value=1.9e-10 Score=79.72 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=44.7
Q ss_pred eeeeeeeeee-eeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCC-------CCEEEEEeec
Q 041424 92 KIFVKMLTEE-IVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKD-------DRGVACFISD 146 (148)
Q Consensus 92 ~I~Vk~~~gk-~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~-------gstI~l~l~~ 146 (148)
.+|++...++ ++.++++ +|++|++ |+|+|+.|+|++||++|||++ ++||+|+++.
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 3455554444 5655655 8999886 999999999999999999999 9999999873
No 134
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=2.2e-10 Score=79.44 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=49.9
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe------------------eeecCeeeCCCCchhhhCCCCC--CEEE
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD------------------LFCTGMKLKDCKTLACYGVKDD--RGVA 141 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e------------------L~f~g~~L~d~~tL~~y~I~~g--stI~ 141 (148)
..|.|+||+.+|++++++|+ ||++|++ |+|+|+.|+|++||++|+|+.| +|||
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 34889999999999999888 7777661 9999999999999999999877 6799
Q ss_pred EEeec
Q 041424 142 CFISD 146 (148)
Q Consensus 142 l~l~~ 146 (148)
|+++-
T Consensus 95 Lvlr~ 99 (116)
T 1wgh_A 95 LVARE 99 (116)
T ss_dssp EEECS
T ss_pred EEccC
Confidence 99873
No 135
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=78.95 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=46.5
Q ss_pred heeeeeeeeeeee--eeehhhh-------Hhhhhhe------------eeecCeeeCCCCchhhh--CCCCCCEEEEE
Q 041424 89 LKVKIFVKMLTEE--IVKLKVK-------VLLTIRD------------LFCTGMKLKDCKTLACY--GVKDDRGVACF 143 (148)
Q Consensus 89 ~~i~I~Vk~~~gk--~~~l~v~-------lK~~i~e------------L~f~g~~L~d~~tL~~y--~I~~gstI~l~ 143 (148)
+.|+|+||..+|+ .++++++ ||++|++ |+|+|+.|+|+++|++| +|++|++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999998887 4566545 8888774 99999999999999999 99999999985
No 136
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.02 E-value=8.2e-10 Score=75.36 Aligned_cols=62 Identities=10% Similarity=0.253 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+++++++++|.|++|.++. |.++|++.++++|+++..
T Consensus 41 ~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~-------Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 41 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------TPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTC-------CTTTTTCCTTEEEEEEEC
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCC-------CHHHcCCCCCCEEEEEee
Confidence 46889999999999999999999999999999999999999999 999999999999999987
No 137
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=2.8e-10 Score=78.46 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=52.7
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|.++|+|+..+|+.+.++|+ ||++|++ |+|+|+.|+|+++|++|+|++|++|+|+++.
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 56889999999999988877 8888886 9999999999999999999999999999863
No 138
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=4.4e-10 Score=76.47 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|++++||+|.|++|.++. |.++|++.++++|+++..
T Consensus 35 ~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~-------Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 35 SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD-------TPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTS-------CTTTTTCCTTEEEEECCC
T ss_pred CEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEEe
Confidence 46889999999999999999999999999999999999999999 999999999999999987
No 139
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.00 E-value=3.6e-10 Score=79.30 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=48.1
Q ss_pred heeeeeeeeeeeeee-ehhhh-------Hhhhh-----he------------eeecCeeeCCCCchhhhCCCCC------
Q 041424 89 LKVKIFVKMLTEEIV-KLKVK-------VLLTI-----RD------------LFCTGMKLKDCKTLACYGVKDD------ 137 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~-~l~v~-------lK~~i-----~e------------L~f~g~~L~d~~tL~~y~I~~g------ 137 (148)
.-|.|+||+.+|+.+ +++++ ||++| ++ |+|+|+.|+|++||++|+|+.|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 347889999999877 56555 88888 21 9999999999999999999999
Q ss_pred CEEEEEee
Q 041424 138 RGVACFIS 145 (148)
Q Consensus 138 stI~l~l~ 145 (148)
+|+||+++
T Consensus 95 ~tmhlVlr 102 (126)
T 1se9_A 95 TTMHVIIQ 102 (126)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 68999986
No 140
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.00 E-value=9.4e-10 Score=71.13 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=57.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
.+.+.|.+++++..|+...+++.|+|+++++++|.|++|.++. |.++|++.+|++|+++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~-------Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKE-------LPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCC-------CHHHHTCCTTCEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEe
Confidence 6889999999999999999999999999999999999999999 9999999999999975
No 141
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=3.3e-10 Score=76.91 Aligned_cols=57 Identities=30% Similarity=0.339 Sum_probs=49.2
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
...|.|+|+..+|+ +.++|+ ||++|++ |+|+|+.|+|+++|.+|+|++|++|+|+++
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 88 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 35588999988776 566665 8888875 999999999999999999999999999976
No 142
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=4.1e-10 Score=75.87 Aligned_cols=58 Identities=29% Similarity=0.321 Sum_probs=49.7
Q ss_pred hhheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 87 LKLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 87 ~~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
....|+|+|+..+|+ +.++|+ ||++|++ |+|+|+.|+|+++|++|+|++|++|+|+++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 345688999988776 566665 8888876 999999999999999999999999999986
No 143
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.96 E-value=3.4e-10 Score=76.47 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred eeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEE
Q 041424 100 EEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACF 143 (148)
Q Consensus 100 gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~ 143 (148)
+++++++|+ ||++|++ |+|+|++|+|++||++|+|++|++|+++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 566666665 8999886 9999999999999999999999999443
No 144
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.96 E-value=2.7e-10 Score=75.80 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=49.8
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+|+.. |+.+.++|+ ||++|++ |+|+|+.|+|+++|++|+|++|++|||+++
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4588999887 888877776 8888876 999999999999999999999999999876
No 145
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.94 E-value=5.1e-10 Score=83.68 Aligned_cols=56 Identities=32% Similarity=0.520 Sum_probs=52.0
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+||..+|++++++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+|+++
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 3899999999999998887 8999886 999999999999999999999999999876
No 146
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.94 E-value=6.9e-10 Score=77.84 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=49.4
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe------------------eeecCeeeCCCCchhhhCCCCCC--EEE
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD------------------LFCTGMKLKDCKTLACYGVKDDR--GVA 141 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e------------------L~f~g~~L~d~~tL~~y~I~~gs--tI~ 141 (148)
..|.|+||+.+|++++++|+ ||++|++ |+|+|+.|+|++||++|+|+.|+ |+|
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 34788999999999998888 7777661 99999999999999999999777 789
Q ss_pred EEeec
Q 041424 142 CFISD 146 (148)
Q Consensus 142 l~l~~ 146 (148)
|+++-
T Consensus 96 lv~r~ 100 (125)
T 2gow_A 96 LVARE 100 (125)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 88863
No 147
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.94 E-value=8.7e-11 Score=82.49 Aligned_cols=56 Identities=32% Similarity=0.526 Sum_probs=0.0
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|+|+|+..+|+++.++|+ +|+.|++ |+|+|+.|+|+.+|++|||++|++|+|+++-
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence 568899999999988887 8888876 9999999999999999999999999999863
No 148
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=73.96 Aligned_cols=55 Identities=31% Similarity=0.311 Sum_probs=47.9
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|.|+|+.. |+.+.++|+ ||++|++ |+|+|+.|+|+.+|++|||++|++|+|+++
T Consensus 25 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 25 IMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred eEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 477888877 777777666 8888875 999999999999999999999999999876
No 149
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=8.3e-10 Score=77.34 Aligned_cols=57 Identities=30% Similarity=0.288 Sum_probs=49.9
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
..|+|+|+.. |+.+.++|+ ||.+|++ |+|+|+.|+|+++|.+|+|++|++|+|+++.
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 3588999988 888877776 8888886 9999999999999999999999999999863
No 150
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.93 E-value=9.2e-10 Score=75.34 Aligned_cols=57 Identities=33% Similarity=0.567 Sum_probs=50.9
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|+|+..+|+.+.++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 35889999888888877776 8888876 999999999999999999999999999986
No 151
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=6.4e-10 Score=73.64 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=46.8
Q ss_pred eeeeeeeeeeee--eeehhhh-------Hhhhhhe------------eeecCeeeCCCCchhhh--CCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEE--IVKLKVK-------VLLTIRD------------LFCTGMKLKDCKTLACY--GVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk--~~~l~v~-------lK~~i~e------------L~f~g~~L~d~~tL~~y--~I~~gstI~l~l~ 145 (148)
.|+|+||..+|+ .+.++++ ||++|++ |+|+|+.|+|+++|++| +|++|++|||+++
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 477888888777 5555543 7777764 99999999999999999 9999999999976
No 152
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.92 E-value=5.4e-10 Score=76.76 Aligned_cols=62 Identities=11% Similarity=0.260 Sum_probs=59.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|+++|+++|.|++|.++. |.++|++.++++|+++..
T Consensus 37 ~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~-------Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 37 AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETK-------TPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSS-------HHHHHHCSSEEEEEEECC
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEEc
Confidence 35789999999999999999999999999999999999999999 999999999999999988
No 153
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=74.96 Aligned_cols=56 Identities=21% Similarity=0.171 Sum_probs=45.5
Q ss_pred eeeeee-eeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 91 VKIFVK-MLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk-~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
+++.|+ ...|+.++++++ ||+.+.+ |+|+|+.|.|+.||.+|||++|.||||+.+.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 455555 345666666665 8888776 9999999999999999999999999999864
No 154
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.88 E-value=1.9e-10 Score=83.26 Aligned_cols=55 Identities=33% Similarity=0.560 Sum_probs=0.0
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|+..+|+++.++|+ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+|+++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 578899989999888887 8888886 999999999999999999999999999886
No 155
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.88 E-value=9.7e-10 Score=75.17 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=47.8
Q ss_pred heeeeeeeee---eeeeeehhhh--------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKML---TEEIVKLKVK--------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~---~gk~~~l~v~--------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
+.|+|+|+.. +|+.+.++|. +|++|++ |+|+|+.|+|+++|++|+|++|++|+|+++
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 4578888877 6776654433 8888886 999999999999999999999999999986
No 156
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.86 E-value=2.9e-09 Score=73.27 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=41.4
Q ss_pred eeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 99 TEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 99 ~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
+|+++.++|+ +|++|++ |+|+|+.|+|+++|++|+|++|++|+|+++
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 4667776666 8888886 999999999999999999999999999986
No 157
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=1.9e-09 Score=72.64 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=47.8
Q ss_pred eeeeeeeeeee----eeeehhhh-------Hhhhhhe----------eeecCeeeCCC-CchhhhCCCCCCEEEEEeec
Q 041424 90 KVKIFVKMLTE----EIVKLKVK-------VLLTIRD----------LFCTGMKLKDC-KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 90 ~i~I~Vk~~~g----k~~~l~v~-------lK~~i~e----------L~f~g~~L~d~-~tL~~y~I~~gstI~l~l~~ 146 (148)
.|+|+|+..++ +.+.++|+ ||++|++ |+|+|+.|+|+ ++|.+|+|++|++|+|+.+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 47788887644 67777666 9999886 99999999988 79999999999999998764
No 158
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.84 E-value=3.7e-09 Score=71.94 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=48.4
Q ss_pred eeeeeeeeee--eeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCC-CCCCEEEEEeec
Q 041424 91 VKIFVKMLTE--EIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGV-KDDRGVACFISD 146 (148)
Q Consensus 91 i~I~Vk~~~g--k~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I-~~gstI~l~l~~ 146 (148)
++++|+...+ .+++++|+ +|++|++ ++|+|+.++|++||.+||| ++|+++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6778888764 67777776 9999986 9999999999999999999 699999999854
No 159
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.80 E-value=4.4e-09 Score=68.65 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=44.7
Q ss_pred eeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 93 IFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 93 I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.+++.++|+.+.++++ ||++|++ |+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455667777777666 8888875 999999999999999999999999999864
No 160
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.8e-09 Score=71.98 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=48.8
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eee--cCeeeCCCCchhhhCCCCCCEEEEEeecc
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFC--TGMKLKDCKTLACYGVKDDRGVACFISDI 147 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f--~g~~L~d~~tL~~y~I~~gstI~l~l~~~ 147 (148)
.|.++++.++|++++++|+ +|++|++ |+| +|+ |+|+.+|++|+|++|++|+|+++|+
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 3666777778999988877 9999986 765 566 9999999999999999999999886
No 161
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.75 E-value=7.7e-09 Score=68.16 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=48.1
Q ss_pred eeeeeeeeeeeeeeeh-hhh-------Hhhhhhe----------ee---ecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKL-KVK-------VLLTIRD----------LF---CTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l-~v~-------lK~~i~e----------L~---f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+||. .|+.+.+ ++. +|++|++ |+ |+|+.|+|+.+|++|+|++|++|+|+-+
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 47788885 7888888 777 9999886 88 9999999999999999999999999754
No 162
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.69 E-value=1.1e-08 Score=81.47 Aligned_cols=58 Identities=31% Similarity=0.512 Sum_probs=52.0
Q ss_pred hheeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.+.|+|+||..+|+.+.++|+ ||++|++ |+|+|+.|+|+++|++|+|++|++|+|+++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 456899999999998888777 9998886 999999999999999999999999999986
No 163
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=65.83 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecC--CCcccccccccccCCCc-ccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLM--NGRLIDYEDMALASPNV-KRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~--d~~~~~~~~~~L~~~~i-~~~s~i~l~~~ 70 (148)
..+++.+.|.+|+..||++|++++||||++|+|+|.|+.|. .+. .-..|.- .+.+.+.|+.+
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~-------~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGR-------LAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTC-------BGGGSCCCBTTBCEEEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCC-------ccccCCCCCCCCCEEEEec
Confidence 45789999999999999999999999999999999998764 333 4444433 34455665554
No 164
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.69 E-value=7.4e-09 Score=69.16 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=46.3
Q ss_pred eeeeeeeeeeeeee-ehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIV-KLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~-~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+||. .|+.+ .++++ ||++|++ |+|.|+.|+|+ +|++|+|++|++|+|+.+
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 37788884 67888 47777 9999886 99999999999 999999999999998754
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.62 E-value=2.1e-08 Score=81.86 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=49.4
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe-------------eeecCeeeCCCCchhhhCCCCCCEE-EEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD-------------LFCTGMKLKDCKTLACYGVKDDRGV-ACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e-------------L~f~g~~L~d~~tL~~y~I~~gstI-~l~l~ 145 (148)
..|.|+||..+|+++.++|+ ||.+|++ |+|+|+.|+|+++|.+|+|++|++| +|+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 34889999999999998887 7777653 9999999999999999999999999 66654
No 166
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.61 E-value=4.2e-08 Score=65.37 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=48.8
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|.|+..+|+.+.++|+ |+..+++ |+|.|+.|+++.|..+|++++||+|+++++
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 34788888888888888777 5555554 999999999999999999999999999985
No 167
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.60 E-value=4.3e-08 Score=66.57 Aligned_cols=32 Identities=38% Similarity=0.545 Sum_probs=29.9
Q ss_pred eeeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 115 DLFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 115 eL~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
.|+|+|+.|+|+++|++|+|++|++|||+++.
T Consensus 69 rLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 69 DLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp EEEETTEECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred EEEECCeECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 38999999999999999999999999999864
No 168
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=2.3e-08 Score=65.77 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=42.2
Q ss_pred eeeeeeeeeeeeeee--h-hhh-------Hhhhhhe-----------eeec--CeeeCCCCchhhhCCCCCCEEEE
Q 041424 90 KVKIFVKMLTEEIVK--L-KVK-------VLLTIRD-----------LFCT--GMKLKDCKTLACYGVKDDRGVAC 142 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~--l-~v~-------lK~~i~e-----------L~f~--g~~L~d~~tL~~y~I~~gstI~l 142 (148)
.|.|+|++.+|+.+. + +|+ +|++|++ |+|. |+.|+|++||++|+|++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 378899998877653 4 444 8888775 6655 99999999999999999999654
No 169
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.55 E-value=3.4e-08 Score=65.73 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=45.1
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|+|+|+ ..|+++.+++. ||++|++ |+|+|+.|+| .+|.+|+|++|++|+|+.+
T Consensus 17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 3778887 46788777776 9999886 9999999955 5999999999999999764
No 170
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.7e-07 Score=68.61 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
+.+.+.|.+++++..|+...+++.|+|++++|++|.|++|.++. |.+++++.+|++|+++..+.
T Consensus 39 ~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~-------TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 39 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------TPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp CEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTC-------CTTTTTCCTTEEEEEEECCS
T ss_pred CEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEEeccC
Confidence 46789999999999999999999999999999999999999999 99999999999999999854
No 171
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.52 E-value=1.2e-08 Score=76.21 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+|+|++++|++++++|+ ||++|++ |+|+|++|+|++||+ +||||||+++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR 67 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK 67 (189)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence 678999999999999988 8988886 999999999999999 9999999986
No 172
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=6.1e-07 Score=61.84 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|+++++++|.|.+|.++. |.+++++.+|++|.++..
T Consensus 51 ~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~-------TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 51 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH-------TPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTC-------CTTTTTCCTTCEEEEEEC
T ss_pred CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCC-------CHHHcCCCCCCEEEEEee
Confidence 35789999999999999999999999999999999999999999 999999999999999876
No 173
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.48 E-value=9.4e-08 Score=62.63 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=34.5
Q ss_pred Hhhhhhe----------eee-------cCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 109 VLLTIRD----------LFC-------TGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 109 lK~~i~e----------L~f-------~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
||++|++ |+| .|+.++|+++|++|||++|++|||+-.|
T Consensus 30 lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 30 IKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp HHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred HHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 9999987 775 6899999999999999999999999765
No 174
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.48 E-value=1.3e-07 Score=63.12 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=40.4
Q ss_pred eeeeeeeeee--eeeehhhh-------Hhhhhhe----------eeec--Ce---ee-CCCCchhhhCCCCCCEEEEEe
Q 041424 91 VKIFVKMLTE--EIVKLKVK-------VLLTIRD----------LFCT--GM---KL-KDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 91 i~I~Vk~~~g--k~~~l~v~-------lK~~i~e----------L~f~--g~---~L-~d~~tL~~y~I~~gstI~l~l 144 (148)
++++|+...+ +.++++++ ||++|++ |+|. |+ .| +|+++|++|||++|++|+|+-
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 4566655443 35555444 9999987 8887 45 45 999999999999999999974
No 175
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.47 E-value=1.3e-07 Score=62.18 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=33.2
Q ss_pred Hhhhhhe----------eeecCeeeCC-CCchhhhCCCCCCEEEEEee
Q 041424 109 VLLTIRD----------LFCTGMKLKD-CKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 109 lK~~i~e----------L~f~g~~L~d-~~tL~~y~I~~gstI~l~l~ 145 (148)
||++|++ |+|+|+.|+| ..+|++|+|++|++|+|+.+
T Consensus 37 LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 37 LAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp HHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 8888875 9999999998 56899999999999999865
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.41 E-value=2.4e-07 Score=58.55 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=44.2
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
|+|.|+..+|+.+.+.|+ ++...++ ++|.|+.|.++.|.++|++++||+|+++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 467777777887777777 4444443 99999999999999999999999999863
No 177
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.39 E-value=2.2e-07 Score=60.09 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=49.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCee-----cCCCcccccccccccCCCcccccceeEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDR-----LMNGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~-----L~d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
++.+++++++|+.+|+++|++.+++|++.|.+.++..+ +..+. +|+++|++.|+.+++.
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~-------~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSK-------SLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCC-------TTTTTCCCTTCCEEC-
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCC-------CHHHcCCCCCCEEEEe
Confidence 57788999999999999999999999999888765444 23556 9999999999999864
No 178
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.39 E-value=3e-07 Score=60.86 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=47.1
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|.|.|+..+|+.+.++|+ |+...++ |+|.|+.|.++.|.++|++++||+|++++.
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 4677888888888887777 5544444 999999999999999999999999999875
No 179
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.33 E-value=8.1e-07 Score=66.27 Aligned_cols=63 Identities=8% Similarity=0.227 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEee
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCA 71 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~ 71 (148)
+.+.+.|.+++++..|+...+++.|+|+.+++++|.|+.|.++. |.+++++.++++|+++...
T Consensus 67 ~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~dd-------TPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 67 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQ-------TPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSC-------CTTTTTCCTTEEEEECCCC
T ss_pred CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCC-------CHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999999999999999 9999999999999999983
No 180
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.30 E-value=6.2e-07 Score=59.46 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=46.7
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|.|.|+..+|+.+.+.|+ |+..+++ |+|.|+.|.++.|..+|++.+||+|++++.
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4778888878887777776 4444443 999999999999999999999999999875
No 181
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.29 E-value=3.8e-07 Score=61.03 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=33.0
Q ss_pred Hhhhhhe----------eeecCe---e----eCCCCchhhhCCCCCCEEEEEeec
Q 041424 109 VLLTIRD----------LFCTGM---K----LKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 109 lK~~i~e----------L~f~g~---~----L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
||++|++ |+|.|+ . ++|+++|++|+|++|++|+++-.|
T Consensus 42 LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~ 96 (97)
T 2kj6_A 42 VKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLD 96 (97)
T ss_dssp HHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECC
T ss_pred HHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCC
Confidence 9999886 999883 3 499999999999999999998764
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.24 E-value=9.4e-07 Score=56.81 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=45.0
Q ss_pred heeeeeeeeeeee-eeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEE
Q 041424 89 LKVKIFVKMLTEE-IVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACF 143 (148)
Q Consensus 89 ~~i~I~Vk~~~gk-~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~ 143 (148)
..|.|.|+..+|+ .+.+.|+ |+...++ |+|.|+.|.++.|..+|++++||+|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3477888888885 7777776 4444443 9999999999999999999999999875
No 183
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.23 E-value=6.1e-07 Score=60.79 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=47.7
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|.|.|+..+|+.+.+.|+ |+..+++ |+|.|+.|.++.|..+|++++||+|++++.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 34778888888888887777 5544444 999999999999999999999999999875
No 184
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.22 E-value=1.2e-06 Score=59.48 Aligned_cols=56 Identities=11% Similarity=0.212 Sum_probs=47.8
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|.|.|+. +|+.+.++|+ |+...++ |+|.|+.|.++.|.++|++++||+|++++.
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 458888998 8988888877 5544444 999999999999999999999999999875
No 185
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.22 E-value=5.2e-07 Score=61.18 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=42.6
Q ss_pred eeeeeeeeeeee-eehh-hh-----Hhhhhhe----------eeecCe-----------e----eCCCCchhhhCCCCCC
Q 041424 91 VKIFVKMLTEEI-VKLK-VK-----VLLTIRD----------LFCTGM-----------K----LKDCKTLACYGVKDDR 138 (148)
Q Consensus 91 i~I~Vk~~~gk~-~~l~-v~-----lK~~i~e----------L~f~g~-----------~----L~d~~tL~~y~I~~gs 138 (148)
|.|.||..+|+. +.++ -+ ||++|++ |+|.|+ . ++|+++|++|||++|+
T Consensus 8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~ 87 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS 87 (107)
T ss_dssp EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC
Confidence 677888777754 3333 22 8888886 778777 4 5899999999999999
Q ss_pred EEEEEee
Q 041424 139 GVACFIS 145 (148)
Q Consensus 139 tI~l~l~ 145 (148)
+|||+..
T Consensus 88 ~L~l~~~ 94 (107)
T 1wf9_A 88 MVYLAYE 94 (107)
T ss_dssp EEECCCS
T ss_pred EEEEEeC
Confidence 9998754
No 186
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.12 E-value=8.7e-07 Score=60.63 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=47.4
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.|.|.|+..+|+.+.+.|+ |+...++ |+|.|+.|.++.|..+|++++||+|++++.
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 4778888888888887777 5545444 999999999999999999999999999875
No 187
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.11 E-value=1.7e-05 Score=50.80 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCc-ccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSED-IQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
.+.+.|.++.+|.+|-+.-..+.|||++ ..+|.|.|..|..+. ++++|++.+++.|.+++
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~-------tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPND-------QVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTS-------BGGGSSCCTTCEEEEEC
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccC-------ChhhhCCcCCceeeeee
Confidence 3678899999999999999999999999 899999999999999 99999999999998774
No 188
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.10 E-value=1.8e-06 Score=57.15 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=32.2
Q ss_pred Hhhhhhe----------eeecC---ee----eCCCCchhhhCCCCCCEEEEEeec
Q 041424 109 VLLTIRD----------LFCTG---MK----LKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 109 lK~~i~e----------L~f~g---~~----L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
||++|++ |+|.| +. ++|+++|.+|||++|++||++-.+
T Consensus 34 lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 34 FKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp HHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred HHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 8988886 88876 43 589999999999999999997543
No 189
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.08 E-value=1.9e-06 Score=68.95 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=44.7
Q ss_pred eeeeeeeeeeeeeehhhh-------Hhhhhhe----------ee---ecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 91 VKIFVKMLTEEIVKLKVK-------VLLTIRD----------LF---CTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~---f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
++|.||. +|++++++++ +|++|++ |+ |+|+.|+|+.+|++|+|++|++|+|+-
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 6677885 7888888777 9999986 88 899999999999999999999999974
No 190
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.05 E-value=4e-06 Score=58.09 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=32.6
Q ss_pred Hhhhhhe----------eeecC---e---e-eCCCCchhhhCCCCCCEEEEEeec
Q 041424 109 VLLTIRD----------LFCTG---M---K-LKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 109 lK~~i~e----------L~f~g---~---~-L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
||++|++ |+|.| + . ++|+++|.+|||++|++||++..+
T Consensus 33 lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 33 LKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp HHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred HHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 8988886 89977 4 3 489999999999999999998754
No 191
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.03 E-value=3.1e-06 Score=54.93 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=41.0
Q ss_pred eeeeeeeeeeeeeehh-hh-------Hhhhhhe----------eeec--CeeeC---CCCchhhhCCCCCCEEEEEee
Q 041424 91 VKIFVKMLTEEIVKLK-VK-------VLLTIRD----------LFCT--GMKLK---DCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 91 i~I~Vk~~~gk~~~l~-v~-------lK~~i~e----------L~f~--g~~L~---d~~tL~~y~I~~gstI~l~l~ 145 (148)
|.|.|+..+|+.+ +. ++ ||+.|++ |+|+ ++.++ |+.+|++|||++|++|++.-+
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 4677888888644 44 44 8888875 6665 58874 789999999999999998643
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.02 E-value=7.1e-07 Score=67.45 Aligned_cols=62 Identities=10% Similarity=0.253 Sum_probs=0.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.+.+.|.+++++..|+...+++.|+|++++|++|.|+++.++. |.+++++.+|++|+++..
T Consensus 31 seV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~ddd-------TPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 31 SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------TPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCC-------CHHHcCCCCCCEEEEEec
Confidence 35678899999999999999999999999999999999999999 999999999999999998
No 193
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.62 E-value=0.00017 Score=54.27 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=59.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIK 73 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~ 73 (148)
.+.+.|.+++++..|+...+++.|+|+++++++|.|+.+.++. +-.++.+.+++.|.+...+.+
T Consensus 32 ~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~-------Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 32 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------TPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTC-------CTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCC-------ChHHhhhcccccchhhccccc
Confidence 4678999999999999999999999999999999999999999 999999999999999877443
No 194
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.58 E-value=8.3e-05 Score=51.11 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=45.9
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
.+.|.|+..+|+.+.+.|+ |+...++ ++|.|+.|.++.|..++++.+||+|.+++.-
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 4677777777887777766 3333333 9999999999999999999999999998753
No 195
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.57 E-value=1e-05 Score=65.67 Aligned_cols=65 Identities=11% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKV 74 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~ 74 (148)
.+.+.|.+++++..|+...+++.|++++++++.|.|+.+.++. |.+++++.+|++|.++....++
T Consensus 32 ~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~-------TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 32 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------TPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCC-------ChHHcCCCccchhhhhhccCch
Confidence 4678899999999999999999999999999999999999999 9999999999999999985443
No 196
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.53 E-value=0.00023 Score=47.41 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=55.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
.+.+.|.+++++..|...-+++.|++++.-+++|.|..+..+. |.+++++.+|++|.+.
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~-------TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRE-------LPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCS-------CHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCC-------CHHHcCCCCCCEEEEe
Confidence 5788999999999999999999999999999999999999999 9999999999998764
No 197
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.31 E-value=0.00026 Score=46.65 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=30.1
Q ss_pred Hhhhhhe----------eeecC-------eee-CCCCchhhhCCCCCCEEEEEeec
Q 041424 109 VLLTIRD----------LFCTG-------MKL-KDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 109 lK~~i~e----------L~f~g-------~~L-~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
||.+|++ |.|.+ ..| +|.++|.+|++.+|++||+...+
T Consensus 38 LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 38 VKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp HHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred HHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 8888886 66552 224 78899999999999999998654
No 198
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.29 E-value=3.7e-05 Score=62.66 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEeeeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAIKV 74 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~~~ 74 (148)
.+.+.|.+++++..|+...+++.|++++++++.|.|+++.++. |.+++++.+|++|.++....+.
T Consensus 41 ~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~-------Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 41 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-------APEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCC-------CHHHcCCCCCCEeeeeeccccc
Confidence 4678899999999999999999999999999999999999999 9999999999999999885433
No 199
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00044 Score=51.83 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=46.0
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeecc
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISDI 147 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~~ 147 (148)
.++|.|+. +|+.+.++|+ |+...++ ++|.|+.+.++.|..++++.+||+|++++.-+
T Consensus 29 ~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 29 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp CEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCS
T ss_pred eEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 46777764 7888777777 4444443 99999999999999999999999999988643
No 200
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00053 Score=51.15 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=45.0
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|.|+. +|+.+.++|+ |+...++ ++|.|+.+.++.|..++++.+||+|.+++.
T Consensus 56 e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 56 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred CcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 347778864 7888887777 3333333 999999999999999999999999998864
No 201
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.0025 Score=42.18 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=57.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+.+.+..++....|...-+++.|++++..|+.|.|..+..+. |-+++++.++++|.++.-
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~-------TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTA-------TPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTS-------CHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCC-------CHhHcCCCCCCEEEEEEe
Confidence 5678889999999999999999999999999999999999999 999999999999988764
No 202
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.75 E-value=0.0016 Score=41.89 Aligned_cols=59 Identities=7% Similarity=0.121 Sum_probs=49.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCc-----ccEEEEcCeecCCCcccccccccccCCCcccccceeE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSED-----IQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQL 67 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~-----~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l 67 (148)
+++-|.++...|+..|++.+-+..+++.. +.|..-.+..|.++. .|++|++.+|+.+.+
T Consensus 17 ~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~-------~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 17 SVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGEC-------KLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTS-------BTGGGTCCTTCEEEE
T ss_pred ceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCC-------EEeeCCcCCCCEEEE
Confidence 57889999999999999999999987642 234445677888888 999999999998875
No 203
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.63 E-value=0.0038 Score=40.90 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=56.8
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+..++.|.|+.++.++=+.-.+++|+.+++-.|.|+++.++-.. .+.-.|+.+|+.+.|+..
T Consensus 20 rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSl-------pfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 20 RRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSL-------QWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSC-------BHHHHCCCSSCEEEEECS
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccc-------eeEecCCCCCCEEEEEEc
Confidence 35788999999999999999999999999999999999998887 888899999999999876
No 204
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.62 E-value=0.0016 Score=45.42 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=46.0
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCc-------------------------------------ccEEEE--cCeecC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSED-------------------------------------IQDLFF--AGDRLM 42 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~Q~L~~--~g~~L~ 42 (148)
...++.|+.+.||++++..|+.+.||+.. .|+|.. .+.-|+
T Consensus 22 ~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD 101 (128)
T 2kc2_A 22 TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLD 101 (128)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCccc
Confidence 45789999999999999999999999855 233321 113345
Q ss_pred CCcccccccccccCCCcccccceeEEE
Q 041424 43 NGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 43 d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
+.+ +|.++||.+++++.|-.
T Consensus 102 ~sr-------tL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 102 HGR-------TLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSS-------CHHHHTCCTTSEEEEEE
T ss_pred CCC-------cHHHcCCCCCCEEEEEE
Confidence 566 99999999999866543
No 205
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.33 E-value=0.0006 Score=51.50 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=0.0
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..|+|.| ..+|+.+.++|+ ++...++ ++|.|+.+.++.|-.++++++||+|.+++.
T Consensus 20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 3467777 567888887777 3333333 999999999999999999999999998864
No 206
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.11 E-value=0.093 Score=42.01 Aligned_cols=115 Identities=23% Similarity=0.228 Sum_probs=78.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhC----CCCcccEEEE------cCeecCCCcccccccccccCCCcccccceeEEEeee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEG----TSEDIQDLFF------AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFCAI 72 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~g----ip~~~Q~L~~------~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~~~ 72 (148)
+-++.++|+.||.+.-.+|.++.. .++++=-|+. .|.=|.+++ +|+.|++++++.++...+
T Consensus 14 ~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~-------~l~~y~~~~~~~l~~~~~-- 84 (371)
T 3ivf_A 14 VKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGK-------ALDYYMLRNGDTMEYRKK-- 84 (371)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTS-------BGGGGTCCTTCEEEEEEC--
T ss_pred eEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCC-------CHHHhCCCCCceeeccCc--
Confidence 457889999999999999988764 3566666766 234488888 999999999998776544
Q ss_pred eeccccccCCchhhhhheeeeeeeeeeeeeeehhhh----Hh---hhhh------e-----eeecC---------eeeCC
Q 041424 73 KVLSISVKAPSDDILKLKVKIFVKMLTEEIVKLKVK----VL---LTIR------D-----LFCTG---------MKLKD 125 (148)
Q Consensus 73 ~~~~~~~~~p~~~~~~~~i~I~Vk~~~gk~~~l~v~----lK---~~i~------e-----L~f~g---------~~L~d 125 (148)
.+.+.|..++|....+.++ .+ ..+. + |.+.. .-|+.
T Consensus 85 -----------------~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~ 147 (371)
T 3ivf_A 85 -----------------QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDH 147 (371)
T ss_dssp -----------------EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCT
T ss_pred -----------------eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhc
Confidence 2456677777777766666 11 1111 1 44321 23455
Q ss_pred CCchhhhCCCCCCEEEEE
Q 041424 126 CKTLACYGVKDDRGVACF 143 (148)
Q Consensus 126 ~~tL~~y~I~~gstI~l~ 143 (148)
.+++.+.+.....++++.
T Consensus 148 ~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 148 GRTLREQGVEEHETLLLR 165 (371)
T ss_dssp TSBTGGGTCCTTCEEEEE
T ss_pred CchhHhhCCCCCceEEEE
Confidence 677888777667776654
No 207
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.81 E-value=0.0055 Score=39.37 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=24.2
Q ss_pred eeecCeeeCCCCchhhhCCCCCCEEEE
Q 041424 116 LFCTGMKLKDCKTLACYGVKDDRGVAC 142 (148)
Q Consensus 116 L~f~g~~L~d~~tL~~y~I~~gstI~l 142 (148)
+.-+|..|.++.+|++|+|.+||.|.+
T Consensus 54 v~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 54 VVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 556788999999999999999999875
No 208
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=95.75 E-value=0.013 Score=38.89 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=26.5
Q ss_pred eeecCeeeCCCCchhhhCCCCCCEEEEE
Q 041424 116 LFCTGMKLKDCKTLACYGVKDDRGVACF 143 (148)
Q Consensus 116 L~f~g~~L~d~~tL~~y~I~~gstI~l~ 143 (148)
++|.|..+..+.|-.+.++.+||+|.++
T Consensus 69 F~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 69 FFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 9999999999999999999999999764
No 209
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=95.60 E-value=0.022 Score=36.31 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=27.8
Q ss_pred eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 116 LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 116 L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
|.|.|.-|+.+.++.+|++.+||.|.+++
T Consensus 53 llFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 53 LEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred EEEcCcccCccCChhhhCCcCCceeeeee
Confidence 99999999999999999999999998876
No 210
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.93 E-value=0.036 Score=36.20 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=44.1
Q ss_pred hheeeeeeeeeeeeeeehhhh----Hhhhhhe-------------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 88 KLKVKIFVKMLTEEIVKLKVK----VLLTIRD-------------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 88 ~~~i~I~Vk~~~gk~~~l~v~----lK~~i~e-------------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.+||.+.|-..+++..+++|. +.+.+++ |.|+++.++-..+++-.|+.+|+.+.|+-+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 356788887778887777776 2222222 999999999999999999999999999754
No 211
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.50 E-value=0.19 Score=38.01 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=49.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCc-ccEEEE-c----CeecCC-CcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSED-IQDLFF-A----GDRLMN-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~-~Q~L~~-~----g~~L~d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++..++..+|+.+|+.++...+++|++ .-||-. . ...|.| +. +|.++++..+..|.+-.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~-------tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDN-------TIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTS-------BTTTTTCCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCC-------CHHHhCCCCCCEEEEEEe
Confidence 567789999999999999999999997 578753 3 234665 46 999999999999988887
No 212
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.27 E-value=0.23 Score=31.38 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=46.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE--EcCeecC---CCcccccccccccCCCcccccceeEEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF--FAGDRLM---NGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~~g~~L~---d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
.+.-...+++||.+|..-|.. .|.++....|. |-.+.+. .+. +|.+.|+.+.+++.+-.
T Consensus 19 r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~-------TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 19 FLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNK-------SLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTS-------BTTTTTCCSEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCC-------CHHHCCCCCCCEEEEEe
Confidence 345567789999999999998 67777888887 4356673 346 99999999999888754
No 213
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.16 E-value=0.18 Score=34.12 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=43.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh--CCCCc------ccEEEEc----CeecCCCccccc-------ccccccCCCcccccc
Q 041424 4 VTLNVEKSETIKNLKGMVHEKE--GTSED------IQDLFFA----GDRLMNGRLIDY-------EDMALASPNVKREST 64 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~--gip~~------~Q~L~~~----g~~L~d~~~~~~-------~~~~L~~~~i~~~s~ 64 (148)
+.+.|-..+||.++|+||-... |.|-+ ...|-+. |+.|.|.. ..+ .--||+.|++.+|++
T Consensus 26 i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D-~ts~~~~~wkrLNTL~HY~V~dgat 104 (111)
T 4e71_A 26 IPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLD-LTSQREGRWKRVNTLMHYNVRDGAT 104 (111)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSC-TTSCC---CCCCCBHHHHTCCTTCE
T ss_pred eeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccC-ccceecCcceEecchhhcCCCCCCE
Confidence 5666778999999999998763 56543 4445552 45566643 111 455899999999999
Q ss_pred eeEEEe
Q 041424 65 MQLLFC 70 (148)
Q Consensus 65 i~l~~~ 70 (148)
+.|+.+
T Consensus 105 l~l~~~ 110 (111)
T 4e71_A 105 LILSKV 110 (111)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988754
No 214
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.12 E-value=0.077 Score=34.94 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=27.4
Q ss_pred eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 116 LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 116 L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
++|.|..+.+..|-.+.++.+||+|.+++
T Consensus 63 FlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 63 LLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 88999999999999999999999998765
No 215
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=94.03 E-value=0.0094 Score=48.27 Aligned_cols=56 Identities=11% Similarity=0.212 Sum_probs=0.0
Q ss_pred heeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 89 LKVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 89 ~~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
..++|.|+. +|+.+.++|+ |+...++ ++|.|+.+.++.|.+++++++||+|.+++.
T Consensus 20 ~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence 346667766 5666666666 3333333 999999999999999999999999998764
No 216
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.68 E-value=0.3 Score=31.42 Aligned_cols=60 Identities=27% Similarity=0.335 Sum_probs=53.5
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+.-.++-.++++.||+.++.+.|++-+.-.+...+..|+.+. +|.+.+++-...+++.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k-------~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDR-------SLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTS-------BTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCc-------cHHHhhcccccEEEEEEE
Confidence 455778889999999999999999999888888888899999 999999998888888776
No 217
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.66 E-value=0.6 Score=32.22 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=47.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh--CCCC------cccEEEEc----Ce-ecCCCccccc-------ccccccCCCccccc
Q 041424 4 VTLNVEKSETIKNLKGMVHEKE--GTSE------DIQDLFFA----GD-RLMNGRLIDY-------EDMALASPNVKRES 63 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~--gip~------~~Q~L~~~----g~-~L~d~~~~~~-------~~~~L~~~~i~~~s 63 (148)
+.+.|-..+||.++|+||-... |.|- +...|-+. |. .|.|... .+ .--||+.|++.+|+
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~-ts~~~~~~krLNTL~HY~V~dga 97 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDD-TSVVEDGRKKLNTLAHYKIPEGA 97 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSST-TSCEETTEECCCBTTTTTCCTTC
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCC-cceecCceeEeccccccCCCCCC
Confidence 5667778999999999998863 5553 45556652 33 3665431 11 55689999999999
Q ss_pred ceeEEEe
Q 041424 64 TMQLLFC 70 (148)
Q Consensus 64 ~i~l~~~ 70 (148)
++.|..+
T Consensus 98 tv~l~~~ 104 (127)
T 3h6n_A 98 SLAMSLI 104 (127)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9998876
No 218
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.65 E-value=0.14 Score=38.25 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=49.7
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCc-ccEEE--E-cC--eecCC-CcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSED-IQDLF--F-AG--DRLMN-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~-~Q~L~--~-~g--~~L~d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++.++..+|+.+|+.++...+++|++ .-||- + .+ ..|.| +. +|.++++.++..|.+-.+
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~-------tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDS-------TIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTS-------BHHHHTCCTTCEEEEEEC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCC-------CHHHhCCCCCCEEEEEEe
Confidence 678889999999999999999999987 57774 3 22 24655 46 999999999999998887
No 219
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.45 E-value=0.077 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEc
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFA 37 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~ 37 (148)
.++.|-.++|+.+||..|++..|+|+++|||-.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 3678889999999999999999999999999543
No 220
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=92.82 E-value=0.059 Score=34.12 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.4
Q ss_pred CCCCchhhhCCCCCCEEEEEe
Q 041424 124 KDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 124 ~d~~tL~~y~I~~gstI~l~l 144 (148)
..+.+|+++||+.||+|++..
T Consensus 59 ~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 59 SSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCCTTTTTCCCTTCCEEC--
T ss_pred CCCCCHHHcCCCCCCEEEEec
Confidence 478899999999999999753
No 221
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=92.31 E-value=0.14 Score=35.54 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.9
Q ss_pred eeeCCCCchhhhCCCCCCEEEEEe
Q 041424 121 MKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 121 ~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
.-|++++||.++||.+++++.|..
T Consensus 98 ~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 98 NWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp EEECSSSCHHHHTCCTTSEEEEEE
T ss_pred CcccCCCcHHHcCCCCCCEEEEEE
Confidence 556889999999999999988764
No 222
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.05 E-value=0.28 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=34.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD 39 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~ 39 (148)
|+.+.|++..+..+|.++|.++.++|++.-.|.|...
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 7899999999999999999999999999989998753
No 223
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.90 E-value=0.49 Score=32.25 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=46.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhhh--CCCCc------ccEEEE-cC---e-ecCCCcc---ccc---ccccccCCCcccccc
Q 041424 4 VTLNVEKSETIKNLKGMVHEKE--GTSED------IQDLFF-AG---D-RLMNGRL---IDY---EDMALASPNVKREST 64 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~--gip~~------~Q~L~~-~g---~-~L~d~~~---~~~---~~~~L~~~~i~~~s~ 64 (148)
+.+.|-..+||.++|+||-... |.|.+ ...|-+ .| + .|.|... +.. .--||+.|++.+|++
T Consensus 29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgat 108 (117)
T 4e74_A 29 VPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSV 108 (117)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCE
T ss_pred eEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCE
Confidence 5667778999999999998763 66644 345554 23 2 3555331 111 455899999999999
Q ss_pred eeEEEe
Q 041424 65 MQLLFC 70 (148)
Q Consensus 65 i~l~~~ 70 (148)
+.|+.+
T Consensus 109 l~l~~~ 114 (117)
T 4e74_A 109 VALVSK 114 (117)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998876
No 224
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=91.55 E-value=0.2 Score=37.23 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=41.7
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
.+.|.|+. +|+.+.+.++ |+...++ ++|.|+.+.+..|-.+.++.++|+|.+...
T Consensus 21 ~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 21 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred cEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 45666665 5555555555 4444443 999999999999999999999999998764
No 225
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=91.47 E-value=0.035 Score=44.90 Aligned_cols=56 Identities=9% Similarity=0.214 Sum_probs=0.0
Q ss_pred eeeeeeeeeeeeeeehhhh-------Hhhhhhe----------eeecCeeeCCCCchhhhCCCCCCEEEEEeec
Q 041424 90 KVKIFVKMLTEEIVKLKVK-------VLLTIRD----------LFCTGMKLKDCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 90 ~i~I~Vk~~~gk~~~l~v~-------lK~~i~e----------L~f~g~~L~d~~tL~~y~I~~gstI~l~l~~ 146 (148)
.+.|.|+. +|..+.++|+ |+...++ ++|.|+.+.++.|-.+.++.+||+|.+++.-
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecc
Confidence 46666766 6676666666 3333333 8999999999999999999999999987653
No 226
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=91.09 E-value=1.3 Score=30.55 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=44.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhh----hCCCCc----ccEEEEc-C---eecCCCcc---c-cc---ccccccCCCccccc
Q 041424 3 TVTLNVEKSETIKNLKGMVHEK----EGTSED----IQDLFFA-G---DRLMNGRL---I-DY---EDMALASPNVKRES 63 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~----~gip~~----~Q~L~~~-g---~~L~d~~~---~-~~---~~~~L~~~~i~~~s 63 (148)
.+.+.|-..+||.++|+||-.. .|.|-+ ...|-+. | ..|.|... . .. .--||+.|++.+|+
T Consensus 40 ~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dga 119 (126)
T 3kuz_A 40 NISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGS 119 (126)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTC
T ss_pred ceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCC
Confidence 4677788899999999998764 377653 3444441 2 34544321 1 11 44589999999999
Q ss_pred ceeEE
Q 041424 64 TMQLL 68 (148)
Q Consensus 64 ~i~l~ 68 (148)
++.|+
T Consensus 120 tlal~ 124 (126)
T 3kuz_A 120 TIKVF 124 (126)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99775
No 227
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=90.88 E-value=0.59 Score=32.73 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=46.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhh--CCCCc------ccEEEE----cCe-ecCCCccccc-------ccccccCCCcccc
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKE--GTSED------IQDLFF----AGD-RLMNGRLIDY-------EDMALASPNVKRE 62 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~--gip~~------~Q~L~~----~g~-~L~d~~~~~~-------~~~~L~~~~i~~~ 62 (148)
.+.+.|-..+||.++|+||-+.. |.|-+ ..-|-+ +|+ .|.|... .+ ..-||+.|++.+|
T Consensus 42 ~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~-tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 42 GVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDV-TSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSST-TCCEETTEEECCBHHHHTCCTT
T ss_pred ceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCC-cccccCCceeecchhccCCCCC
Confidence 35666778899999999999874 56643 223433 133 3666531 11 3448999999999
Q ss_pred cceeEEEe
Q 041424 63 STMQLLFC 70 (148)
Q Consensus 63 s~i~l~~~ 70 (148)
+++.|+.+
T Consensus 121 a~l~l~~~ 128 (138)
T 2r2o_A 121 ATVALVPC 128 (138)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 99999877
No 228
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=89.96 E-value=1.2 Score=29.61 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=48.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE--EcCeecC--C-CcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF--FAGDRLM--N-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~~g~~L~--d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+.-....++||.++..-|....+.+...-.|+ |-.+.+. | +. +|.+.|+.+.+++.+...
T Consensus 25 rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~-------TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 25 SFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKR-------RLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTS-------BTGGGTCSSEEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCC-------CHHHCCCCCceEEEEEEC
Confidence 456678899999999999999988876777776 4455665 3 46 999999999988877654
No 229
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.93 E-value=1.5 Score=29.81 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=46.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE--EcCeec--CC-CcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF--FAGDRL--MN-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~~g~~L--~d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+.-...+++||.+|..-|... |.++..-.|+ |-.+.| .| +. +|.+.|+.+.+++.+...
T Consensus 55 rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~-------TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 55 REQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDI-------TLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSS-------CTTTTTCCSSBCCEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCC-------CHHHCCCCCceEEEEEEc
Confidence 4566778899999999999887 7777777776 446677 33 56 999999999888877643
No 230
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.39 E-value=1.3 Score=35.08 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=34.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCee
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDR 40 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~ 40 (148)
...+.+++..|+.++++++++.+|++++.|.|++.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 323 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred EEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 45678889999999999999999999999999998843
No 231
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=84.67 E-value=0.88 Score=38.41 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=29.7
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF 35 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~ 35 (148)
.++.|..++|+.+||+.+++..|+|+++|||-
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 36789999999999999999999999999984
No 232
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=81.75 E-value=6.9 Score=33.72 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=47.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhh--CCCC------cccEEEEc----Ce-ecCCCccccc-------ccccccCCCcccc
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKE--GTSE------DIQDLFFA----GD-RLMNGRLIDY-------EDMALASPNVKRE 62 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~--gip~------~~Q~L~~~----g~-~L~d~~~~~~-------~~~~L~~~~i~~~ 62 (148)
.+.+.|-..+||.++|+||-... |+|- +...|-+. |+ .|.|.. ..+ ..-||+.|++.+|
T Consensus 248 ~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D-~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 248 QVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDED-ITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSS-TTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCC-ccccccCceeEecchhhcCCCCC
Confidence 46677778999999999998763 5553 34455542 33 355543 111 5568999999999
Q ss_pred cceeEEEee
Q 041424 63 STMQLLFCA 71 (148)
Q Consensus 63 s~i~l~~~~ 71 (148)
+++.++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999998764
No 233
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=79.71 E-value=1.2 Score=38.76 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=35.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe-ecCCCc
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD-RLMNGR 45 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~-~L~d~~ 45 (148)
.++.+++..|+.+++..++..+|||++.|.+++.+. .+....
T Consensus 324 ~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~ 366 (676)
T 3qa8_A 324 HTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQ 366 (676)
T ss_dssp CEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTS
T ss_pred ceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCc
Confidence 467889999999999999999999999999998654 344443
No 234
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=79.59 E-value=1.2 Score=29.99 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.3
Q ss_pred CchhhhCCCCCCEEEEEee
Q 041424 127 KTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~ 145 (148)
+||+.|+|.+|+++.|+.+
T Consensus 92 NTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 92 NTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp CBHHHHTCCTTCEEEEEEC
T ss_pred cchhhcCCCCCCEEEEEeC
Confidence 7999999999999998764
No 235
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.53 E-value=8.6 Score=33.22 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=46.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhh--hCCCCc------ccEEEEc----Ce-ecCCCccccc-------ccccccCCCccccc
Q 041424 4 VTLNVEKSETIKNLKGMVHEK--EGTSED------IQDLFFA----GD-RLMNGRLIDY-------EDMALASPNVKRES 63 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~--~gip~~------~Q~L~~~----g~-~L~d~~~~~~-------~~~~L~~~~i~~~s 63 (148)
+.+.|-..+||.++|+||-.. .|+|-+ ...|-+. |+ .|.|.. ..+ ..-||+.|+|.+|+
T Consensus 276 i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D-~ts~~~~~wkrLNTL~HY~V~dga 354 (644)
T 3hm6_X 276 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDED-VTSEVQGLWRRLNTLQHYKVPDGA 354 (644)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSS-TTCCEETTEEECCBTTTTTCCTTC
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccC-ccceecCcceeecchhhcCCCCCc
Confidence 566777899999999999865 366643 3345542 33 355533 111 55689999999999
Q ss_pred ceeEEEee
Q 041424 64 TMQLLFCA 71 (148)
Q Consensus 64 ~i~l~~~~ 71 (148)
++.++.+.
T Consensus 355 ~v~L~p~~ 362 (644)
T 3hm6_X 355 TVALVPCL 362 (644)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecc
Confidence 99988763
No 236
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=79.35 E-value=4.6 Score=25.74 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=37.0
Q ss_pred EEEcCC-CcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKS-ETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~-~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++.. .||.+|.+.+ ++++..-.+..+|.....+ ...+.-+++|+.|.++..
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~--------~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE--------RYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG--------GTTTSBCCSSSEEEEEEE
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh--------hcCCcCCCCCCEEEEEcc
Confidence 345555 8999998875 6777766677888776543 344566889999987754
No 237
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.91 E-value=1.8 Score=27.85 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=44.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEc---CeecCCCcccccccccccCCCccc
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFA---GDRLMNGRLIDYEDMALASPNVKR 61 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~---g~~L~d~~~~~~~~~~L~~~~i~~ 61 (148)
...+.|+|..++.+|--.|.++..+.|+.-.|.-. +..|+-.+ +|.+|||++
T Consensus 22 KtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLsk-------SLndlgirE 76 (91)
T 2daj_A 22 KTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTK-------SLNDLGLRE 76 (91)
T ss_dssp EEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTS-------CHHHHTCSE
T ss_pred eeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhc-------chhhhhhhh
Confidence 35678999999999999999999999998777633 44688888 999999987
No 238
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=78.67 E-value=1.4 Score=30.37 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.3
Q ss_pred CchhhhCCCCCCEEEEEeec
Q 041424 127 KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~~ 146 (148)
+||+.|+|.+|+++.|+.++
T Consensus 86 NTL~HY~V~dgatv~l~~~~ 105 (127)
T 3h6n_A 86 NTLAHYKIPEGASLAMSLID 105 (127)
T ss_dssp CBTTTTTCCTTCEEEEEECC
T ss_pred ccccccCCCCCCEEEEEEcc
Confidence 89999999999999998764
No 239
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=78.16 E-value=1.4 Score=29.95 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=18.3
Q ss_pred CchhhhCCCCCCEEEEEeec
Q 041424 127 KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~~ 146 (148)
+||+.|+|.+|+++.|+.+.
T Consensus 96 NTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 96 NTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp CBHHHHTCCTTCEEEEEECC
T ss_pred ccccccCCCCCCEEEEEeCC
Confidence 89999999999999998764
No 240
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=74.48 E-value=11 Score=22.45 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=36.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++++...|+.+|.+.+ ++++..-.+..+|.....+. -+++|+.+.++..
T Consensus 16 ~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~------------~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 16 KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE------------EIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS------------BCCTTCEEEEEEC
T ss_pred eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc------------cCCCCCEEEEEec
Confidence 456777789999998876 56766666667777765553 3677888887653
No 241
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=73.80 E-value=10 Score=25.97 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHhhhCCCC-------cccEEEEcCeecCC-CcccccccccccCCCcccccceeEEEe
Q 041424 11 SETIKNLKGMVHEKEGTSE-------DIQDLFFAGDRLMN-GRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 11 ~~tV~~lK~~i~~~~gip~-------~~Q~L~~~g~~L~d-~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
..|+.+|=..+..+.|.+. ..++|+|.--.=++ ++ +|++.|+++|+.+.+.--
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k-------~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDR-------TLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTS-------BTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccC-------cHHHcCcCCCcEEEEEcc
Confidence 4689998888888888653 24666665332221 36 999999999998877643
No 242
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=73.01 E-value=7.2 Score=22.86 Aligned_cols=52 Identities=6% Similarity=0.149 Sum_probs=36.0
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++ ...||.+|.+.+ ++++..-.+..+|.....+ ...+.-+++|+.+.++..
T Consensus 9 ~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~--------~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL--------EVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp ECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG--------GCCCCCCCTTCEEEEEEC
T ss_pred EEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc--------ccCCcCCCCCCEEEEEee
Confidence 445 678999998876 5666666666777766433 234556889999887753
No 243
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.06 E-value=4.9 Score=23.74 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=36.0
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++....||.+|.+.+ ++++..-.+..+|...... ...+.-+++|+.+.++..
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~--------~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE--------QWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH--------HHTTCCCCTTEEECEEES
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch--------hcCCcCCCCCCEEEEEee
Confidence 4556778999998886 5666666666777765432 233456788998887653
No 244
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=68.26 E-value=10 Score=24.84 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=44.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE--EcCeecC--CCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF--FAGDRLM--NGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~--~~g~~L~--d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+.-....++||.+|..-|... +..+..-.|+ |=.+.|. .+. +|.+.|+.+.+++.|...
T Consensus 35 r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~-------TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 35 VLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGS-------SLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSC-------BHHHHTCSSCEEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCC-------CHHHcCCCCCeEEEEEeC
Confidence 3455677899999999999965 5555666665 4356675 346 999999999988876554
No 245
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=67.66 E-value=3.5 Score=28.78 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=17.7
Q ss_pred CchhhhCCCCCCEEEEEeec
Q 041424 127 KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~~ 146 (148)
+||+.|+|.+|+++.|+.+.
T Consensus 110 NTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 110 NTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp CBHHHHTCCTTCEEEEEEC-
T ss_pred cchhccCCCCCCEEEEEECC
Confidence 69999999999999998764
No 246
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=67.65 E-value=5.4 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=41.2
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhh-CCCCcccEEE--EcCeecCC-CcccccccccccCCCcccccce
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKE-GTSEDIQDLF--FAGDRLMN-GRLIDYEDMALASPNVKRESTM 65 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~-gip~~~Q~L~--~~g~~L~d-~~~~~~~~~~L~~~~i~~~s~i 65 (148)
.+.-....++||.+|..-|.... +.+.....|+ |-.+.+.| +. +|.+.|+.+.+.+
T Consensus 64 rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~-------TL~eagL~psavl 123 (127)
T 1s3s_G 64 RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQ-------TLKEANLLNAVIV 123 (127)
T ss_dssp EEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTC-------BHHHHTCSSCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCC-------cHHHCCCcCceEE
Confidence 35566788999999999999863 4555556666 44677765 46 9999999985544
No 247
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=67.65 E-value=3.7 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.515 Sum_probs=15.8
Q ss_pred CchhhhCCCCCCEEEEE
Q 041424 127 KTLACYGVKDDRGVACF 143 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~ 143 (148)
+||+.|+|.+|+++.|+
T Consensus 108 NTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 108 NTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CBTGGGTCCTTCEEEEE
T ss_pred ccccccCCCCCCEEEEe
Confidence 79999999999999886
No 248
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=67.53 E-value=4.6 Score=25.10 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=23.0
Q ss_pred ecCeee---CCCCchhhhCCCCCCEEEEEee
Q 041424 118 CTGMKL---KDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 118 f~g~~L---~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|-.+.+ +.+.||.+.|+.++++|.+-.+
T Consensus 53 fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 53 FPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp SSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 667877 4578999999999999988653
No 249
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=63.88 E-value=18 Score=21.60 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=32.3
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCC--cccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSE--DIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~--~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+++ ...||++|.+.+....++.. ..-.+..+|....+. +.-+++|+.|.++..
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----------~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----------NTPLKDGDVISLLPP 70 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----------TCCCCTTCEEEEECC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----------CcCCCCCCEEEEECC
Confidence 455 56899999999987544332 223344455443222 345788998887654
No 250
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=61.17 E-value=17 Score=21.88 Aligned_cols=54 Identities=4% Similarity=-0.033 Sum_probs=33.5
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhC-----CCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEG-----TSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++ ....||.+|.+.+..... ++...-.+..+|+....+ ..+++|+.|.++..
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~------------~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFD------------HPLTDGDEVAFFPP 77 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTT------------CBCCTTCEEEEECC
T ss_pred EEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCC------------CCCCCCCEEEEeCC
Confidence 4455 567899999999876531 222333455666655433 34778888877643
No 251
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=60.33 E-value=12 Score=22.67 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=38.0
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.++ +..||.+|-+. .|+++..--+..+|..+..+ ..++.-+++|+.|.++..
T Consensus 10 ~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~--------~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 10 REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG--------KWDETPVTAGDEIEILTP 61 (73)
T ss_dssp ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH--------HHTTCBCCTTCEEEEECC
T ss_pred EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH--------HcCcccCCCCCEEEEEcc
Confidence 344 56899888764 68888877788888877544 345667889999987754
No 252
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=60.22 E-value=11 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=38.3
Q ss_pred EEEc--CCCcHHHHHHHHHhhhCCC-CcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVE--KSETIKNLKGMVHEKEGTS-EDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~--~~~tV~~lK~~i~~~~gip-~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++ ...||.+|-+. .|++ +..--+..+|..+..+ ..++.-+++|+.|.++.-
T Consensus 10 ~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~--------~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 10 STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE--------AFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT--------HHHHCEECSSBCEEECCC
T ss_pred EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH--------HcCcccCCCCCEEEEEee
Confidence 4555 66899998775 4777 7777778888887655 344566888999987654
No 253
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=58.12 E-value=21 Score=21.65 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=35.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
..+++++..|+++|=+. .|+|++.-....+|+....+. +.+|+++.++-
T Consensus 13 ~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~-------------~l~GD~VeIv~ 61 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ-------------SVEVDRVKVLR 61 (74)
T ss_dssp EEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS-------------SSCCCCEEECS
T ss_pred eeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH-------------CCCCCEEEEEE
Confidence 45788889999987554 899999886677777665554 23477777654
No 254
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=57.76 E-value=10 Score=23.57 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCC-----CcccEEEEcC
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTS-----EDIQDLFFAG 38 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip-----~~~Q~L~~~g 38 (148)
..+++-|+++.+..+|..+|..+.+.+ ....+|-|..
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 368899999999999999999999975 3445666653
No 255
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=57.63 E-value=37 Score=22.22 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=45.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCc--ccEEEEcC---eecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSED--IQDLFFAG---DRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~--~Q~L~~~g---~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++.|....-|+-+-.++-++.+++.+ .--|-.-- ..|.-.. +|..||++.++.++....
T Consensus 34 ~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~-------tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 34 EITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHW-------TLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTS-------BHHHHTCCTTSCEEEEEC
T ss_pred cEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhh-------hhhhhceeeeeeeeccCC
Confidence 4788999999999999999988877643 22222211 3567778 999999999998886643
No 256
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=56.20 E-value=15 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=23.6
Q ss_pred ecCeeeC--CCCchhhhCCCCCCEEEEEeec
Q 041424 118 CTGMKLK--DCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 118 f~g~~L~--d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|-.+.+. .+.||.+.|+.+..+|++...|
T Consensus 69 fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 69 FPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp SSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 6677775 4799999999999999886543
No 257
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=55.53 E-value=33 Score=21.00 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=35.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhC-CCC----------cccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEG-TSE----------DIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~g-ip~----------~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
+..+++++...||.+|.+.+..... +.. ..-.+..+|+....+ .-+++|+.|.++..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~------------~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG------------EATAAGDELALFPP 85 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT------------SBCCTTCEEEEECC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC------------cccCCCCEEEEECC
Confidence 3467778778999999999987652 110 113444555544433 34778888877643
No 258
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=53.43 E-value=20 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=21.7
Q ss_pred EEEEc-CCCcHHHHHHHHHhhhCCCCcccEEE
Q 041424 5 TLNVE-KSETIKNLKGMVHEKEGTSEDIQDLF 35 (148)
Q Consensus 5 ~l~v~-~~~tV~~lK~~i~~~~gip~~~Q~L~ 35 (148)
++.++ ...+|.+||..|.++.+.-...--|.
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 34444 67899999999999887654443443
No 259
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=52.37 E-value=21 Score=22.96 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCccc-EEEEcCe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQ-DLFFAGD 39 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q-~L~~~g~ 39 (148)
+++++.|++..|=.++|+.++..+|+.+..- .+...|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 5789999999999999999999999998764 4455555
No 260
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=51.50 E-value=22 Score=22.50 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDL 34 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L 34 (148)
+++++.|++..|=.++|+.++..+|+.+..-.-
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 478999999999999999999999999876443
No 261
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=51.40 E-value=39 Score=22.18 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=42.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEE---EcCee--cCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLF---FAGDR--LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~---~~g~~--L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
-+++.+....|+.+++..+.++.+...+.+.|. ++|.. |+++. .--.-.+..+..+++..+
T Consensus 21 y~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d-------~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 21 YVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPND-------LVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTS-------BSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcc-------eEEEeeccccceEEEeeh
Confidence 367788889999999999999999987788886 55643 44443 222234455667776655
No 262
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=49.78 E-value=39 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=26.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccEEEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQDLFF 36 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~ 36 (148)
.+.+.|+++.+..+|+.+|.++..+. ...+++
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ 54 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT 54 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc--ceEEEE
Confidence 37889999999999999999999984 444443
No 263
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=49.39 E-value=46 Score=20.88 Aligned_cols=55 Identities=5% Similarity=0.143 Sum_probs=34.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhC-CC----------CcccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEG-TS----------EDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~g-ip----------~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
..++++....||.+|.+.+..... +. .....+..+|+.... +..+++|+.|.++.
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------------~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------------DEELKDGDVVGVFP 93 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------------TCBCCTTCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------------CCCCCCCCEEEEEC
Confidence 456778788999999999987641 11 122334445544332 34577888887654
No 264
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=45.76 E-value=27 Score=22.38 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=31.5
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccE-EEEcCe
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQD-LFFAGD 39 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~-L~~~g~ 39 (148)
+++++.|++..|=.++|+.++..+++.+..-. +...|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 47899999999999999999999999977643 445554
No 265
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=45.70 E-value=8.7 Score=23.40 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=32.2
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
+++++..||.+|.+.+ ++++....+..+|+....+. -+++|+.|.++.
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~~------------~L~dGD~V~i~p 72 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLEDD------------EVKDGDFVEVIP 72 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSSS------------CCCSSCCCBCSC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCCC------------CcCCCCEEEEEc
Confidence 4556778999988765 46666666677777664433 366777776653
No 266
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=45.69 E-value=23 Score=21.03 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=33.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCCCCccc--EEEEcCeecCCCcccccccccccCCCcccccceeEEE
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGTSEDIQ--DLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLF 69 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gip~~~Q--~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~ 69 (148)
.++++....||.+|.+.+..... ..... .+..+|+....+ ..+++|+.|.++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~------------~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS------------DFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT------------SEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC------------CCcCCCCEEEEEC
Confidence 45566678899999999877631 01222 455666655433 2467788887654
No 267
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=45.44 E-value=17 Score=24.42 Aligned_cols=29 Identities=24% Similarity=-0.022 Sum_probs=24.1
Q ss_pred ecCeee--C-CCCchhhhCCCCCCEEEEEeec
Q 041424 118 CTGMKL--K-DCKTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 118 f~g~~L--~-d~~tL~~y~I~~gstI~l~l~~ 146 (148)
|-.+.+ + .+.||.+.|+.+..+|.+...|
T Consensus 89 fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 89 FPRRKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp SSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred CCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 778888 3 4799999999999999887654
No 268
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=44.23 E-value=59 Score=20.61 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=29.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcc-cEEEEcC
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDI-QDLFFAG 38 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~-Q~L~~~g 38 (148)
.+.+.++++.+..+|.+++.+..++++.+ -.+.|..
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 46788999999999999999999998655 4555653
No 269
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.38 E-value=34 Score=21.65 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccEE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQDL 34 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L 34 (148)
+++++.|++..|=.++|+.++..+|+.+..-.-
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 578999999999999999999999998776443
No 270
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.10 E-value=15 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.136 Sum_probs=17.8
Q ss_pred EEEEEEc---CCCcHHHHHHHHHhhh
Q 041424 3 TVTLNVE---KSETIKNLKGMVHEKE 25 (148)
Q Consensus 3 ~~~l~v~---~~~tV~~lK~~i~~~~ 25 (148)
.+.++++ ..+||.+|-..+.+..
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 4567777 3379999999998876
No 271
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.77 E-value=22 Score=23.14 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=24.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCC
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTS 28 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip 28 (148)
++++-|+++.+..+|..+|..+.+++
T Consensus 24 ~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 24 IFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 57899999999999999999999876
No 272
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=40.28 E-value=60 Score=19.61 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred EEEcCCCcHHHHHHHHHhhhC------C-----CCcccEEEEcCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEG------T-----SEDIQDLFFAGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~g------i-----p~~~Q~L~~~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++...||.+|.+.+..... + ......+..+|...... .-.+..+++|+.|.++..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~--------~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM--------KGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT--------CSSSCBCCTTCEEEEECC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc--------CCCCcCCCCCCEEEEeCC
Confidence 456667899999999987641 0 01233455666544311 112445888998887643
No 273
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.93 E-value=66 Score=20.55 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHhhhCCCCcccEEEE--cCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 12 ETIKNLKGMVHEKEGTSEDIQDLFF--AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 12 ~tV~~lK~~i~~~~gip~~~Q~L~~--~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+..+|+.|..++++++...-+|.. .|..++|+. -+..+ +..|+.|++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEe-------yF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEE-------FFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHH-------HHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechh-------hhhhC---CCCCEEEEEc
Confidence 4789999999999999866666665 477777665 44333 2556666666
No 274
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=39.14 E-value=38 Score=21.26 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 041424 1 MKTVTLNVEKSETIKNLKGMVHEKEGTSE 29 (148)
Q Consensus 1 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~ 29 (148)
|++++++.+.-.|..++-..+.+..+.|.
T Consensus 1 M~~~~iD~~~i~~~~~f~~~~~~~~~~p~ 29 (90)
T 2cx6_A 1 MNIYTFDFDEIESQEDFYRDFSQTFGLAK 29 (90)
T ss_dssp CEEEEEETTSCCSHHHHHHHHHHHTTCCT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCCch
Confidence 89999999999999999999999999996
No 275
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=38.22 E-value=22 Score=29.77 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=45.4
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEc------CeecC-CCcccccccccccCC--CcccccceeEEE
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFA------GDRLM-NGRLIDYEDMALASP--NVKRESTMQLLF 69 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~------g~~L~-d~~~~~~~~~~L~~~--~i~~~s~i~l~~ 69 (148)
+-|+.+.+|+++-..|.+..|+|++.-..+|. ...|+ .+. ++.+. .+.+|+.|-.-.
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~-------t~~~~~~eL~~GdII~fQ~ 216 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDV-------SLDKALDELMDGDIIVFQK 216 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSS-------BHHHHSTTCCTTEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccc-------cHHHHHhcccCCCEEEEEe
Confidence 56889999999999999999999998777765 22456 455 89988 999999765443
No 276
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=35.51 E-value=62 Score=20.55 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.3
Q ss_pred eeecCeeeCCCCchhhhCCCCCCEEEEEe
Q 041424 116 LFCTGMKLKDCKTLACYGVKDDRGVACFI 144 (148)
Q Consensus 116 L~f~g~~L~d~~tL~~y~I~~gstI~l~l 144 (148)
+...+..|++.++|.+.+++-.-.+.+.+
T Consensus 35 f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 35 ICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred EEeeccccCCCccHHHhhcccccEEEEEE
Confidence 66678889999999999999877777654
No 277
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=34.98 E-value=44 Score=21.50 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=27.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcccE
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDIQD 33 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~ 33 (148)
.+++.|++..|=.++|+.++..+|+.+..-.
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VN 54 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGIS 54 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Confidence 3789999999999999999999999987644
No 278
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=33.62 E-value=36 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.1
Q ss_pred CeeeCCCCchhhhCCCCCCEEEEEee
Q 041424 120 GMKLKDCKTLACYGVKDDRGVACFIS 145 (148)
Q Consensus 120 g~~L~d~~tL~~y~I~~gstI~l~l~ 145 (148)
|+=|++++||..|++++|+.|+..-.
T Consensus 59 ~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 59 GIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp CEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEeccCCCCHHHhCCCCCceeeccCc
Confidence 45589999999999999999987643
No 279
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=32.26 E-value=26 Score=30.29 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=17.4
Q ss_pred CchhhhCCCCCCEEEEEeec
Q 041424 127 KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~~ 146 (148)
+||+.|+|.+|+++.|+.+.
T Consensus 343 NTL~HY~V~dga~v~L~p~~ 362 (644)
T 3hm6_X 343 NTLQHYKVPDGATVALVPCL 362 (644)
T ss_dssp CBTTTTTCCTTCEEEEEEC-
T ss_pred cchhhcCCCCCcEEEEEecc
Confidence 79999999999999987653
No 280
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=31.85 E-value=97 Score=19.50 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=45.5
Q ss_pred EEEEcCCCcHHHHHHHHHhhh-C--CCC--cccEEEEcCee--cCCCcccccccccccCCCcccccceeEEEe
Q 041424 5 TLNVEKSETIKNLKGMVHEKE-G--TSE--DIQDLFFAGDR--LMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 5 ~l~v~~~~tV~~lK~~i~~~~-g--ip~--~~Q~L~~~g~~--L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
-+.|+..+|+.++-+++.... | ++| .-.+...+|.. +..+- ++++.||++-..+.+...
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~m-------tVaeaGl~Pme~vev~~~ 83 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDM-------TIAESGLNPTEVIDVVFE 83 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTC-------BHHHHCCCTTCEEEEEEC
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCC-------EeeccCCCcceEEEEEEc
Confidence 467899999999999988753 4 322 24566788876 77777 999999999988887653
No 281
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=31.41 E-value=35 Score=20.34 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=16.4
Q ss_pred cccCCCcccccceeEEEe
Q 041424 53 ALASPNVKRESTMQLLFC 70 (148)
Q Consensus 53 ~L~~~~i~~~s~i~l~~~ 70 (148)
.|.+.|+.+|+.+.+..+
T Consensus 30 rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 30 KLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHTTTCSTTCEEEEEEC
T ss_pred HHHHCCCCCCCEEEEEEe
Confidence 789999999999999876
No 282
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=31.04 E-value=28 Score=30.01 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.6
Q ss_pred CchhhhCCCCCCEEEEEeec
Q 041424 127 KTLACYGVKDDRGVACFISD 146 (148)
Q Consensus 127 ~tL~~y~I~~gstI~l~l~~ 146 (148)
+||+.|+|.+|+++.|+.+.
T Consensus 316 NTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 316 NSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp CBTTTTTCCTTCEEEEEEC-
T ss_pred cchhhcCCCCCceEEEEecc
Confidence 79999999999999998654
No 283
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=30.45 E-value=59 Score=20.18 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCcHHHHHHHHHhhhCCCC
Q 041424 1 MKTVTLNVEKSETIKNLKGMVHEKEGTSE 29 (148)
Q Consensus 1 ~~~~~l~v~~~~tV~~lK~~i~~~~gip~ 29 (148)
|++++++.+.-.|..++-..+.+..+.|.
T Consensus 1 M~~i~id~~~i~~~~~~~~~l~~~l~~P~ 29 (90)
T 2za4_B 1 MKKAVINGEQIRSISDLHQTLKKELALPE 29 (90)
T ss_dssp CEEEEEEGGGCCSHHHHHHHHHHHTTCCT
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHhCCCc
Confidence 88999999999999999999999999984
No 284
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.23 E-value=64 Score=22.75 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQD 33 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~ 33 (148)
+++++.|++..|=.++|+.++..+|+.+..-.
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 47899999999999999999999999987644
No 285
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=29.73 E-value=1e+02 Score=19.20 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.7
Q ss_pred EEEEEEc--CCCcHHHHHHHHHhhh
Q 041424 3 TVTLNVE--KSETIKNLKGMVHEKE 25 (148)
Q Consensus 3 ~~~l~v~--~~~tV~~lK~~i~~~~ 25 (148)
..++++. +..||++|.+.+.+..
T Consensus 21 ~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 21 VHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHC
Confidence 4566776 6789999999998876
No 286
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.39 E-value=73 Score=20.64 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcc
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDI 31 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~ 31 (148)
..-++.|++++|+.++=+.+.++.+...+.
T Consensus 20 ssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 20 ACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp CEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 356899999999999999999999866443
No 287
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=28.38 E-value=43 Score=22.28 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=43.0
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCc--ccEEEEc---CeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSED--IQDLFFA---GDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~--~Q~L~~~---g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+++.|....-|+-+-.++-++..++.+ .--|-.- -..|.-.. +|..|||+.++.++....
T Consensus 37 ~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~-------tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 37 DVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHW-------TLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTS-------CHHHHTCCTTCBBCBBC-
T ss_pred cEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchh-------hHhhhceeccccceecCC
Confidence 3577888889999999999988776632 1122221 13567778 999999999998876543
No 288
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=27.83 E-value=83 Score=19.87 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=27.9
Q ss_pred EEEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe
Q 041424 5 TLNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD 39 (148)
Q Consensus 5 ~l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~ 39 (148)
..-|+.+.|++++..-|..+..+++++-..+|-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn 57 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQ 57 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETT
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 35688999999999999999999887655555433
No 289
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=27.73 E-value=95 Score=20.67 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=29.4
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEE-cCeecCCCc
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFF-AGDRLMNGR 45 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~-~g~~L~d~~ 45 (148)
.-|+.+.||+++...|....++++++-..+| ++....-+.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~ 92 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSA 92 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTS
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccc
Confidence 4588999999999999999999987644444 444334444
No 290
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=27.51 E-value=1.1e+02 Score=20.70 Aligned_cols=58 Identities=5% Similarity=0.164 Sum_probs=38.6
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEE-EcCeec-CCCcccccccccccCCC--c-ccccceeEEEe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLF-FAGDRL-MNGRLIDYEDMALASPN--V-KRESTMQLLFC 70 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~-~~g~~L-~d~~~~~~~~~~L~~~~--i-~~~s~i~l~~~ 70 (148)
.-|+.+.||+++...|....++++++-..+ |.++.+ ..+. ++++.= - .++..++|...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~-------~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVST-------PISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTS-------BHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccc-------hHHHHHHHhCCCCCEEEEEEe
Confidence 458889999999999999999998765545 655544 3344 554320 1 13446666665
No 291
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=25.61 E-value=1.4e+02 Score=19.43 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHhhhCCCCc--ccEEEE--cCeecCCCcccccccccccCCCcccccceeEEEe
Q 041424 12 ETIKNLKGMVHEKEGTSED--IQDLFF--AGDRLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 12 ~tV~~lK~~i~~~~gip~~--~Q~L~~--~g~~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
.+..+|+.|...+++++.+ .-+|.. .|..++|+. -+..+ +..|+.|++.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEe-------YF~tL---p~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDD-------YFLCL---PSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSS-------SSSSS---CSCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechh-------HhhcC---CCCCEEEEEc
Confidence 5789999999999999864 355553 577776665 33322 3556666665
No 292
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.10 E-value=90 Score=21.62 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQD 33 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~ 33 (148)
+++++.|++..+=.++|+.++..+|+.+..-.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 47899999999999999999999999877643
No 293
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.60 E-value=92 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhhCCCCcccE
Q 041424 2 KTVTLNVEKSETIKNLKGMVHEKEGTSEDIQD 33 (148)
Q Consensus 2 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~Q~ 33 (148)
+++++.|++..+=.++|+.++..+|+.+..-.
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 47899999999999999999999999877643
No 294
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.47 E-value=56 Score=18.20 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=14.3
Q ss_pred chhhhCCCCCCEEEEEeec
Q 041424 128 TLACYGVKDDRGVACFISD 146 (148)
Q Consensus 128 tL~~y~I~~gstI~l~l~~ 146 (148)
-...+|+++||.+.+.+.+
T Consensus 20 ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 20 VRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHSCCCTTCEEEEEECS
T ss_pred HHHHcCcCCCCEEEEEEEC
Confidence 3467789999998887654
No 295
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=23.34 E-value=84 Score=20.69 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhh
Q 041424 3 TVTLNVEKSETIKNLKGMVHEK 24 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~ 24 (148)
.++++++.+.|+.++|+.+-+.
T Consensus 31 ~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 31 IVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEeeccccHHHHHHHHHHH
Confidence 3678999999999999988776
No 296
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=22.44 E-value=1.8e+02 Score=19.46 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=43.7
Q ss_pred EEEEEcCCCcHHHHHHHHHh-hhC-------CCCcccEEEEcCeecC--CCcccccccccccCCCcccccceeEE
Q 041424 4 VTLNVEKSETIKNLKGMVHE-KEG-------TSEDIQDLFFAGDRLM--NGRLIDYEDMALASPNVKRESTMQLL 68 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~-~~g-------ip~~~Q~L~~~g~~L~--d~~~~~~~~~~L~~~~i~~~s~i~l~ 68 (148)
+.+-++|+++.++|-+.+-. ..+ |.-+.-.+..+|+... .++ +|++-|+...|.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~k-------SLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADA-------SLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTS-------BTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhh-------hHHHcCCCchheEEEe
Confidence 67889999999999866554 344 4555556788898874 456 9999999998877654
No 297
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.09 E-value=75 Score=17.05 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhCCCCc
Q 041424 15 KNLKGMVHEKEGTSED 30 (148)
Q Consensus 15 ~~lK~~i~~~~gip~~ 30 (148)
.+|-..+++++|+++.
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4566778889999864
No 298
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=21.81 E-value=1.4e+02 Score=19.36 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.2
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD 39 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~ 39 (148)
+-|+.+.|++++...|....++++++-..+|-+.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~ 81 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN 81 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTT
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECC
Confidence 4577888999999999999999887644445444
No 299
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=21.76 E-value=2.5e+02 Score=20.77 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=43.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhhCCCCcc-cEEEEc---Ce--ecCCCcccccccccccCCCcccccceeEEEe
Q 041424 3 TVTLNVEKSETIKNLKGMVHEKEGTSEDI-QDLFFA---GD--RLMNGRLIDYEDMALASPNVKRESTMQLLFC 70 (148)
Q Consensus 3 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~-Q~L~~~---g~--~L~d~~~~~~~~~~L~~~~i~~~s~i~l~~~ 70 (148)
++++.+++++|+.++=..|....|+.... --|.+. |. -|+.+. .+.+.+++.+....+.+|
T Consensus 12 ~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~-------~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 12 ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNK-------KVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSS-------BGGGSCBCCCSSEEEEEE
T ss_pred eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeeccccc-------CHHhhccCCCCCEEEEEE
Confidence 57899999999999999999999997543 223332 22 245555 677666666677777666
No 300
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=21.33 E-value=1.1e+02 Score=19.71 Aligned_cols=58 Identities=7% Similarity=0.182 Sum_probs=38.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhhhCC---CCc--------ccEEEEcC-eecCC------CcccccccccccCCCcccccce
Q 041424 4 VTLNVEKSETIKNLKGMVHEKEGT---SED--------IQDLFFAG-DRLMN------GRLIDYEDMALASPNVKRESTM 65 (148)
Q Consensus 4 ~~l~v~~~~tV~~lK~~i~~~~gi---p~~--------~Q~L~~~g-~~L~d------~~~~~~~~~~L~~~~i~~~s~i 65 (148)
..+++++++|+.+|-..+.+.-.+ .|+ ...|+..+ ..|+. ++ +|.++|+.+|..|
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k-------~l~eLgl~~g~ei 79 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSK-------TLKELGLVDGQEL 79 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHS-------BSGGGTCCTTCEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhC-------CHHHhCCCCCCEE
Confidence 468899999999999999884321 122 34444433 12222 23 6889999999887
Q ss_pred eEE
Q 041424 66 QLL 68 (148)
Q Consensus 66 ~l~ 68 (148)
++.
T Consensus 80 ~Vt 82 (98)
T 1y8x_B 80 AVA 82 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 301
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=21.32 E-value=1.1e+02 Score=20.51 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=27.3
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcCe
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAGD 39 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g~ 39 (148)
.-|+.+.||+++...|.....+++++-..+|-++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn 90 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN 90 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECC
Confidence 4588999999999999999999987655455443
No 302
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=21.07 E-value=1.4e+02 Score=19.73 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=26.5
Q ss_pred EEEcCCCcHHHHHHHHHhhhCCCCcccEEEEcC
Q 041424 6 LNVEKSETIKNLKGMVHEKEGTSEDIQDLFFAG 38 (148)
Q Consensus 6 l~v~~~~tV~~lK~~i~~~~gip~~~Q~L~~~g 38 (148)
.-|+.+.||+++...|.....+++++-..+|-+
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn 83 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVN 83 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBT
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEEC
Confidence 458899999999999999999988765444533
Done!