Query 041425
Match_columns 366
No_of_seqs 174 out of 1868
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 9.8E-38 2.1E-42 291.7 29.9 321 3-334 8-336 (358)
2 PRK11272 putative DMT superfam 100.0 2.6E-32 5.7E-37 250.9 28.5 280 8-329 8-288 (292)
3 PRK11453 O-acetylserine/cystei 100.0 1.1E-31 2.4E-36 247.6 27.5 281 8-329 4-290 (299)
4 PRK15430 putative chlorampheni 100.0 1.4E-31 3.1E-36 246.5 26.4 281 1-327 1-286 (296)
5 PRK11689 aromatic amino acid e 100.0 2.8E-31 6.1E-36 244.4 24.7 284 6-328 2-289 (295)
6 PRK10532 threonine and homoser 100.0 1.1E-30 2.5E-35 240.1 27.7 279 4-331 8-286 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 2.5E-30 5.5E-35 234.1 25.0 258 20-321 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 5.2E-29 1.1E-33 230.3 25.6 281 14-331 8-298 (302)
9 TIGR03340 phn_DUF6 phosphonate 100.0 2.2E-27 4.8E-32 217.1 26.4 276 9-323 2-280 (281)
10 PF06027 DUF914: Eukaryotic pr 100.0 2.5E-27 5.5E-32 217.2 25.8 301 6-335 11-314 (334)
11 PTZ00343 triose or hexose phos 100.0 2.8E-26 6.1E-31 215.4 26.1 284 6-327 47-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 8.6E-26 1.9E-30 204.0 23.0 248 8-301 2-255 (256)
13 COG0697 RhaT Permeases of the 99.9 2.4E-23 5.3E-28 191.0 28.0 284 4-327 3-288 (292)
14 COG2962 RarD Predicted permeas 99.9 1.5E-22 3.3E-27 176.9 24.3 283 1-329 1-286 (293)
15 COG5006 rhtA Threonine/homoser 99.9 8.7E-22 1.9E-26 167.6 23.5 274 9-330 13-286 (292)
16 KOG4510 Permease of the drug/m 99.9 2.7E-25 5.9E-30 190.0 1.9 292 5-328 35-327 (346)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 5.8E-20 1.3E-24 168.3 21.0 278 9-327 2-289 (290)
18 PF08449 UAA: UAA transporter 99.9 2.2E-19 4.8E-24 165.9 24.5 266 37-331 32-302 (303)
19 KOG2765 Predicted membrane pro 99.8 2.8E-19 6.1E-24 160.5 15.0 235 70-331 157-395 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 6.5E-19 1.4E-23 159.8 13.4 276 23-334 32-315 (316)
21 KOG2234 Predicted UDP-galactos 99.7 2.3E-14 5E-19 129.3 26.1 299 8-331 15-327 (345)
22 KOG2766 Predicted membrane pro 99.7 2.5E-17 5.3E-22 140.5 4.4 284 7-329 17-302 (336)
23 KOG1580 UDP-galactose transpor 99.7 3E-15 6.4E-20 126.4 14.9 258 37-326 53-313 (337)
24 COG2510 Predicted membrane pro 99.7 4.3E-16 9.3E-21 119.2 9.0 135 8-150 3-138 (140)
25 PF04142 Nuc_sug_transp: Nucle 99.6 3.3E-14 7.2E-19 126.3 17.2 230 68-317 13-244 (244)
26 KOG1581 UDP-galactose transpor 99.6 1.6E-14 3.5E-19 126.9 13.4 265 36-330 50-317 (327)
27 COG2510 Predicted membrane pro 99.5 2.4E-13 5.3E-18 104.2 13.9 136 188-326 4-139 (140)
28 PF00892 EamA: EamA-like trans 99.5 1.8E-14 4E-19 115.0 7.8 125 18-150 1-125 (126)
29 KOG1444 Nucleotide-sugar trans 99.5 7.4E-12 1.6E-16 111.6 24.3 291 6-334 10-308 (314)
30 KOG1443 Predicted integral mem 99.5 3.7E-12 8E-17 112.0 19.5 252 37-324 45-313 (349)
31 PF00892 EamA: EamA-like trans 99.4 1.7E-12 3.6E-17 103.6 8.8 125 197-325 1-125 (126)
32 KOG3912 Predicted integral mem 99.3 4.5E-11 9.8E-16 103.9 14.5 279 22-326 17-334 (372)
33 TIGR00950 2A78 Carboxylate/Ami 99.3 2.6E-11 5.7E-16 109.6 13.8 134 5-147 125-260 (260)
34 KOG1583 UDP-N-acetylglucosamin 99.3 6.3E-11 1.4E-15 102.9 14.0 265 38-327 34-315 (330)
35 KOG1442 GDP-fucose transporter 99.3 1.2E-11 2.7E-16 107.0 8.9 280 25-337 45-338 (347)
36 PF06800 Sugar_transport: Suga 99.2 3.9E-09 8.4E-14 93.8 21.7 248 35-323 10-268 (269)
37 KOG1582 UDP-galactose transpor 99.2 3.7E-10 8E-15 97.8 14.7 259 34-328 70-334 (367)
38 PF13536 EmrE: Multidrug resis 99.2 2.6E-11 5.6E-16 95.2 5.8 103 42-151 2-106 (113)
39 PRK13499 rhamnose-proton sympo 99.2 2.1E-08 4.6E-13 92.6 23.5 301 5-327 4-342 (345)
40 PRK10532 threonine and homoser 99.1 1E-09 2.2E-14 101.0 14.9 136 7-152 147-282 (293)
41 COG5070 VRG4 Nucleotide-sugar 99.1 7E-10 1.5E-14 93.5 11.5 276 25-333 23-303 (309)
42 PF03151 TPT: Triose-phosphate 99.1 9.4E-10 2E-14 91.1 12.0 138 188-326 1-153 (153)
43 KOG4314 Predicted carbohydrate 99.1 4.2E-10 9.1E-15 93.0 8.5 219 78-330 59-280 (290)
44 TIGR03340 phn_DUF6 phosphonate 99.1 3E-09 6.5E-14 97.4 14.8 134 189-327 3-136 (281)
45 PRK11272 putative DMT superfam 99.1 2.5E-09 5.5E-14 98.4 13.9 138 6-151 148-285 (292)
46 PRK15430 putative chlorampheni 99.1 2.2E-09 4.7E-14 99.0 13.2 139 184-326 5-145 (296)
47 PF05653 Mg_trans_NIPA: Magnes 99.1 8.1E-09 1.8E-13 94.6 16.6 283 1-330 1-296 (300)
48 PRK11689 aromatic amino acid e 99.0 2.7E-09 5.9E-14 98.3 12.8 133 7-151 155-287 (295)
49 PLN00411 nodulin MtN21 family 99.0 7.9E-09 1.7E-13 97.2 14.6 136 8-152 189-329 (358)
50 TIGR00803 nst UDP-galactose tr 99.0 3.4E-09 7.4E-14 93.5 10.1 216 98-324 3-222 (222)
51 TIGR00688 rarD rarD protein. T 99.0 8.6E-09 1.9E-13 93.0 12.3 137 187-326 2-142 (256)
52 PRK02971 4-amino-4-deoxy-L-ara 98.9 3.7E-08 8.1E-13 78.5 12.1 123 187-330 2-126 (129)
53 PRK11453 O-acetylserine/cystei 98.9 3.9E-08 8.4E-13 90.8 14.2 138 7-150 142-286 (299)
54 TIGR00817 tpt Tpt phosphate/ph 98.8 2.9E-08 6.2E-13 91.9 10.7 139 6-150 143-292 (302)
55 COG4975 GlcU Putative glucose 98.8 3.9E-09 8.4E-14 90.5 2.7 275 8-326 2-285 (288)
56 PF13536 EmrE: Multidrug resis 98.7 4.5E-08 9.7E-13 76.7 8.1 108 222-330 3-110 (113)
57 PF03151 TPT: Triose-phosphate 98.7 2.2E-07 4.8E-12 76.8 12.7 133 9-148 1-150 (153)
58 TIGR00776 RhaT RhaT L-rhamnose 98.7 2.3E-07 5E-12 85.2 12.0 128 7-150 151-287 (290)
59 PTZ00343 triose or hexose phos 98.7 4.9E-07 1.1E-11 85.3 13.9 138 6-150 192-347 (350)
60 COG0697 RhaT Permeases of the 98.6 7.5E-07 1.6E-11 81.4 13.5 133 7-150 153-286 (292)
61 PRK15051 4-amino-4-deoxy-L-ara 98.5 6.6E-07 1.4E-11 69.6 9.5 67 260-326 43-109 (111)
62 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.1E-06 2.3E-11 68.4 9.9 69 76-150 40-108 (111)
63 COG2962 RarD Predicted permeas 98.4 2.3E-06 4.9E-11 75.9 10.8 140 186-328 6-146 (293)
64 PRK02971 4-amino-4-deoxy-L-ara 98.4 3.1E-06 6.7E-11 67.5 10.0 118 8-150 2-121 (129)
65 KOG2922 Uncharacterized conser 98.3 1.1E-06 2.3E-11 78.8 6.9 277 4-331 17-311 (335)
66 PF06027 DUF914: Eukaryotic pr 98.2 1.4E-05 3.1E-10 74.0 12.3 140 4-151 164-305 (334)
67 COG5006 rhtA Threonine/homoser 98.2 1.2E-05 2.6E-10 69.7 10.1 137 5-150 145-281 (292)
68 PRK10452 multidrug efflux syst 98.1 1.1E-05 2.3E-10 63.2 6.6 69 260-328 36-105 (120)
69 PF06379 RhaT: L-rhamnose-prot 97.9 0.0036 7.8E-08 57.4 20.4 301 4-326 3-340 (344)
70 PRK09541 emrE multidrug efflux 97.8 5.8E-05 1.3E-09 58.3 6.7 68 261-328 37-105 (110)
71 PF08449 UAA: UAA transporter 97.8 0.00027 5.8E-09 65.4 12.3 130 199-334 12-144 (303)
72 PF05653 Mg_trans_NIPA: Magnes 97.8 7E-05 1.5E-09 68.8 7.7 120 183-326 3-122 (300)
73 KOG4510 Permease of the drug/m 97.8 4.6E-06 1E-10 72.7 -0.1 137 184-328 35-171 (346)
74 PF06800 Sugar_transport: Suga 97.8 0.00027 5.8E-09 63.2 11.0 117 5-129 135-251 (269)
75 PF04657 DUF606: Protein of un 97.8 0.00047 1E-08 55.7 11.3 131 189-323 3-138 (138)
76 KOG1441 Glucose-6-phosphate/ph 97.6 0.00019 4.1E-09 65.9 8.0 138 5-150 160-306 (316)
77 PF04657 DUF606: Protein of un 97.6 0.0009 1.9E-08 54.1 10.5 131 9-148 2-138 (138)
78 COG2076 EmrE Membrane transpor 97.6 0.00026 5.6E-09 53.6 6.4 65 263-327 39-104 (106)
79 PRK10650 multidrug efflux syst 97.5 0.0015 3.4E-08 50.2 10.3 63 263-325 44-107 (109)
80 COG3238 Uncharacterized protei 97.5 0.0016 3.5E-08 52.7 10.7 139 186-327 4-147 (150)
81 PRK10650 multidrug efflux syst 97.5 0.00077 1.7E-08 51.8 8.4 64 80-149 42-106 (109)
82 PRK11431 multidrug efflux syst 97.4 0.00045 9.8E-09 52.8 6.6 65 262-326 37-102 (105)
83 KOG2765 Predicted membrane pro 97.4 0.00078 1.7E-08 61.9 8.4 140 5-150 244-389 (416)
84 PRK10452 multidrug efflux syst 97.4 0.00031 6.7E-09 55.0 5.0 67 78-150 35-102 (120)
85 PF10639 UPF0546: Uncharacteri 97.4 0.00031 6.8E-09 54.1 4.8 110 14-149 2-112 (113)
86 PRK09541 emrE multidrug efflux 97.4 0.00044 9.6E-09 53.4 5.5 67 78-150 35-102 (110)
87 COG2076 EmrE Membrane transpor 97.3 0.00051 1.1E-08 52.0 5.1 65 79-149 36-101 (106)
88 PRK11431 multidrug efflux syst 97.2 0.00078 1.7E-08 51.5 5.6 64 80-149 36-100 (105)
89 COG4975 GlcU Putative glucose 97.0 0.00057 1.2E-08 59.3 3.0 132 188-329 3-139 (288)
90 PRK13499 rhamnose-proton sympo 97.0 0.025 5.5E-07 52.7 14.0 145 5-151 171-341 (345)
91 PF00893 Multi_Drug_Res: Small 97.0 0.0013 2.8E-08 49.4 4.5 55 263-317 38-93 (93)
92 PF04142 Nuc_sug_transp: Nucle 96.9 0.0019 4.1E-08 57.6 5.6 78 253-331 17-94 (244)
93 PF07857 DUF1632: CEO family ( 96.6 0.011 2.4E-07 52.6 8.4 188 9-212 1-208 (254)
94 PF00893 Multi_Drug_Res: Small 96.4 0.0045 9.8E-08 46.4 3.8 57 79-141 35-92 (93)
95 PF10639 UPF0546: Uncharacteri 96.3 0.012 2.6E-07 45.4 6.0 108 194-323 3-111 (113)
96 KOG1581 UDP-galactose transpor 96.3 0.059 1.3E-06 48.5 10.8 138 5-150 169-312 (327)
97 COG3238 Uncharacterized protei 95.9 0.12 2.5E-06 42.0 10.1 137 6-149 3-144 (150)
98 PF07857 DUF1632: CEO family ( 95.6 0.015 3.3E-07 51.8 4.4 132 188-331 1-139 (254)
99 TIGR00803 nst UDP-galactose tr 95.6 0.027 5.9E-07 49.5 5.9 64 78-148 158-221 (222)
100 KOG2922 Uncharacterized conser 95.6 0.0042 9.2E-08 56.2 0.6 126 182-331 16-141 (335)
101 KOG2234 Predicted UDP-galactos 95.2 0.78 1.7E-05 42.5 13.8 141 187-328 15-166 (345)
102 KOG1444 Nucleotide-sugar trans 94.9 0.42 9E-06 43.6 11.2 133 188-326 13-149 (314)
103 KOG1580 UDP-galactose transpor 94.2 0.69 1.5E-05 40.3 10.3 132 6-150 170-312 (337)
104 KOG4314 Predicted carbohydrate 93.4 0.044 9.4E-07 46.2 1.7 63 266-328 65-127 (290)
105 COG5070 VRG4 Nucleotide-sugar 93.3 0.31 6.8E-06 42.0 6.7 135 9-150 156-295 (309)
106 PF06379 RhaT: L-rhamnose-prot 93.0 0.52 1.1E-05 43.6 8.1 139 184-327 4-154 (344)
107 KOG1442 GDP-fucose transporter 91.2 0.66 1.4E-05 41.4 6.2 142 6-154 183-330 (347)
108 KOG1443 Predicted integral mem 90.6 3.4 7.4E-05 37.6 10.3 137 6-149 162-313 (349)
109 KOG4831 Unnamed protein [Funct 90.2 2.7 5.8E-05 31.7 7.8 112 11-150 6-124 (125)
110 KOG1582 UDP-galactose transpor 87.2 2.6 5.6E-05 37.7 7.0 139 6-151 188-332 (367)
111 PRK02237 hypothetical protein; 87.1 2.5 5.5E-05 32.1 6.0 45 284-328 63-107 (109)
112 KOG3912 Predicted integral mem 84.5 1.1 2.4E-05 40.1 3.6 64 263-326 95-158 (372)
113 PF07168 Ureide_permease: Urei 84.1 1.5 3.3E-05 39.8 4.2 131 193-326 2-146 (336)
114 PF02694 UPF0060: Uncharacteri 81.4 2.4 5.3E-05 32.1 3.8 45 285-329 62-106 (107)
115 PRK06638 NADH:ubiquinone oxido 80.3 37 0.0008 29.2 11.5 34 295-328 133-168 (198)
116 KOG1583 UDP-N-acetylglucosamin 79.7 3.2 6.9E-05 37.2 4.6 139 186-334 5-145 (330)
117 KOG4831 Unnamed protein [Funct 77.7 5.5 0.00012 30.1 4.6 58 267-324 65-123 (125)
118 PRK02237 hypothetical protein; 77.2 7.8 0.00017 29.5 5.4 47 99-151 58-105 (109)
119 PF06570 DUF1129: Protein of u 75.6 42 0.00091 29.0 10.5 30 71-101 145-174 (206)
120 PF04342 DUF486: Protein of un 75.1 3.6 7.8E-05 31.1 3.1 30 295-324 77-106 (108)
121 COG1742 Uncharacterized conser 72.6 9.6 0.00021 28.7 4.8 47 283-329 61-107 (109)
122 PF02694 UPF0060: Uncharacteri 71.6 7.9 0.00017 29.4 4.2 52 94-151 51-103 (107)
123 PF08507 COPI_assoc: COPI asso 70.2 5 0.00011 32.2 3.2 17 309-325 88-104 (136)
124 COG3169 Uncharacterized protei 67.0 13 0.00029 27.6 4.4 33 294-326 83-115 (116)
125 PF05977 MFS_3: Transmembrane 66.9 1.1E+02 0.0024 30.7 12.6 37 287-323 353-390 (524)
126 PF05297 Herpes_LMP1: Herpesvi 65.9 2 4.3E-05 38.5 0.0 45 98-148 48-94 (381)
127 KOG2766 Predicted membrane pro 63.7 7.2 0.00016 34.7 3.0 135 5-149 163-297 (336)
128 COG1742 Uncharacterized conser 62.4 63 0.0014 24.5 7.3 42 104-151 63-104 (109)
129 PF04342 DUF486: Protein of un 61.6 47 0.001 25.2 6.6 62 82-149 39-106 (108)
130 PF07168 Ureide_permease: Urei 61.2 7.3 0.00016 35.5 2.7 130 13-149 1-144 (336)
131 PF06123 CreD: Inner membrane 55.9 1.9E+02 0.0041 28.2 11.4 61 118-212 316-376 (430)
132 PF03547 Mem_trans: Membrane t 53.7 2E+02 0.0043 27.2 12.6 8 297-304 113-120 (385)
133 TIGR00892 2A0113 monocarboxyla 52.2 2.3E+02 0.005 27.5 12.6 7 34-40 50-56 (455)
134 PF11044 TMEMspv1-c74-12: Plec 50.8 20 0.00042 22.4 2.5 19 306-324 2-20 (49)
135 PLN00028 nitrate transmembrane 49.0 2.2E+02 0.0047 27.9 11.2 17 311-327 417-433 (476)
136 PF01102 Glycophorin_A: Glycop 48.3 13 0.00029 29.2 1.9 17 311-327 74-90 (122)
137 PRK13108 prolipoprotein diacyl 42.2 3.5E+02 0.0076 26.7 17.9 23 306-328 254-276 (460)
138 PF15102 TMEM154: TMEM154 prot 41.0 17 0.00037 29.4 1.5 23 312-334 67-89 (146)
139 COG3086 RseC Positive regulato 40.3 16 0.00034 29.5 1.2 50 278-330 72-126 (150)
140 COG2271 UhpC Sugar phosphate p 39.9 2.1E+02 0.0046 27.9 8.9 50 288-338 167-217 (448)
141 PRK11010 ampG muropeptide tran 38.8 3.7E+02 0.0079 26.5 11.0 18 309-326 384-401 (491)
142 PRK11715 inner membrane protei 38.0 4E+02 0.0086 26.1 11.1 60 119-212 323-382 (436)
143 PRK11902 ampG muropeptide tran 37.9 3.5E+02 0.0077 25.5 11.0 19 306-324 368-386 (402)
144 TIGR02865 spore_II_E stage II 36.2 5.5E+02 0.012 27.2 14.4 45 99-149 10-54 (764)
145 PF15345 TMEM51: Transmembrane 34.6 28 0.0006 30.5 1.9 25 312-336 67-91 (233)
146 PRK14774 lipoprotein signal pe 32.5 32 0.00069 29.2 2.0 6 264-269 101-106 (185)
147 TIGR01167 LPXTG_anchor LPXTG-m 32.1 58 0.0013 18.7 2.6 17 306-322 10-26 (34)
148 PF15471 TMEM171: Transmembran 30.1 32 0.00069 30.7 1.6 24 308-331 161-184 (319)
149 KOG0569 Permease of the major 29.4 5.5E+02 0.012 25.6 10.2 115 6-129 89-212 (485)
150 smart00786 SHR3_chaperone ER m 29.3 48 0.0011 28.2 2.5 13 138-150 14-26 (196)
151 COG4858 Uncharacterized membra 28.5 3.7E+02 0.0081 22.9 7.9 114 9-129 101-220 (226)
152 PF08229 SHR3_chaperone: ER me 28.0 51 0.0011 28.2 2.5 49 314-362 140-192 (196)
153 PRK10489 enterobactin exporter 27.9 5.2E+02 0.011 24.4 11.3 19 308-326 380-398 (417)
154 TIGR02840 spore_YtaF putative 27.1 48 0.0011 28.6 2.3 45 281-325 34-80 (206)
155 COG2917 Intracellular septatio 27.0 1.2E+02 0.0026 25.3 4.4 59 89-153 12-70 (180)
156 PF07444 Ycf66_N: Ycf66 protei 27.0 58 0.0013 23.7 2.3 28 305-332 4-31 (84)
157 COG4657 RnfA Predicted NADH:ub 26.9 3.7E+02 0.008 22.3 8.4 52 184-235 129-185 (193)
158 PF03348 Serinc: Serine incorp 25.0 6.5E+02 0.014 24.5 22.9 57 259-328 249-305 (429)
159 PF05961 Chordopox_A13L: Chord 24.2 61 0.0013 22.3 1.8 22 309-330 5-26 (68)
160 KOG4455 Uncharacterized conser 23.5 3.2E+02 0.007 20.8 5.6 26 69-95 82-107 (110)
161 PF08693 SKG6: Transmembrane a 23.3 66 0.0014 19.8 1.7 18 312-329 21-38 (40)
162 TIGR00881 2A0104 phosphoglycer 22.8 5.8E+02 0.013 23.1 10.8 18 197-214 41-58 (379)
163 PF11381 DUF3185: Protein of u 22.7 36 0.00078 22.9 0.5 21 310-330 1-21 (59)
164 PRK09412 anaerobic C4-dicarbox 22.7 7.2E+02 0.016 24.2 12.7 31 113-151 7-37 (433)
165 PRK15049 L-asparagine permease 22.4 7.4E+02 0.016 24.5 10.0 10 287-296 422-431 (499)
166 PF06781 UPF0233: Uncharacteri 22.2 2.6E+02 0.0057 20.5 4.9 57 250-326 29-85 (87)
167 PHA03049 IMV membrane protein; 22.2 79 0.0017 21.7 2.0 19 310-328 6-24 (68)
168 KOG1623 Multitransmembrane pro 21.5 3E+02 0.0064 24.5 6.1 19 308-326 188-206 (243)
169 TIGR00891 2A0112 putative sial 21.4 6.4E+02 0.014 23.2 12.3 18 197-214 58-75 (405)
170 PF04246 RseC_MucC: Positive r 21.4 42 0.00091 26.7 0.8 20 282-301 69-88 (135)
171 PRK10435 cadB lysine/cadaverin 21.1 7.5E+02 0.016 23.8 10.1 40 289-330 388-427 (435)
172 CHL00196 psbY photosystem II p 21.1 1.8E+02 0.0039 17.4 3.1 23 186-208 5-27 (36)
173 PF06570 DUF1129: Protein of u 21.0 2.8E+02 0.0062 23.8 5.9 23 8-30 111-133 (206)
174 TIGR00892 2A0113 monocarboxyla 20.5 61 0.0013 31.6 1.8 6 275-280 359-364 (455)
175 PF15099 PIRT: Phosphoinositid 20.4 1.6E+02 0.0034 23.2 3.6 20 303-322 74-93 (129)
176 PRK11469 hypothetical protein; 20.1 53 0.0011 28.0 1.1 42 284-325 44-86 (188)
177 COG3086 RseC Positive regulato 20.0 70 0.0015 25.9 1.7 47 95-148 70-116 (150)
178 PRK12405 electron transport co 20.0 6.1E+02 0.013 22.4 8.7 45 187-235 41-85 (231)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=9.8e-38 Score=291.71 Aligned_cols=321 Identities=24% Similarity=0.521 Sum_probs=254.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCHHHHHHHHHHHHH
Q 041425 3 CHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRER-KNRPKLTIHILCQLFFSALI 81 (366)
Q Consensus 3 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 81 (366)
+++..+.++.+++..+.++...++.|..++.|++|..+.++|+.++.++++++.++++| +++++.+++++..+.+.|++
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999998876544 33344568889999999999
Q ss_pred HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhh------ccccccccccccccceehhhhhhhhhhHhhhhcCc
Q 041425 82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPF------GLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGK 155 (366)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~ 155 (366)
+ .+.+.+++.+++|++++.++++.++.|+++.++++++ +|||+++.+ ++|+++++.|+.++..+++.
T Consensus 88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~------~~G~~l~~~Gv~ll~~~~g~ 160 (358)
T PLN00411 88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAK------VMGTILSLIGALVVIFYHGP 160 (358)
T ss_pred H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHH------HHHHHHHHHHHHHHHHccCc
Confidence 9 7888899999999999999999999999999999999 599999999 99999999999998754442
Q ss_pred ccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 041425 156 LISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILS 235 (366)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (366)
.....+.+. .+|..++. .....+..+...|+++++.++++||+|++.+|+..+++++....++++..++.+...+..
T Consensus 161 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 237 (358)
T PLN00411 161 RVFVASSPP-YLNFRQLS--PPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIG 237 (358)
T ss_pred ccccccccc-cccccccc--cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHH
Confidence 110000000 00000000 000011234467999999999999999999999988887666677777777777776666
Q ss_pred HHHhc-CCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHH
Q 041425 236 LIIER-NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGS 314 (366)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~ 314 (366)
...++ +...|.......+..+++.++. +.++|.+|++++++.+|++++.+.+++|+++++++++++||++++.+++|+
T Consensus 238 l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~ 316 (358)
T PLN00411 238 LVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG 316 (358)
T ss_pred HHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 66543 2333322222334557777765 568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccchhhh
Q 041425 315 ILVIVGMYILLWGKSKEIEE 334 (366)
Q Consensus 315 ~lii~g~~l~~~~~~~~~~~ 334 (366)
++|+.|+++..+.++||.++
T Consensus 317 ~LIl~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 317 ILITLGFYAVMWGKANEEKD 336 (358)
T ss_pred HHHHHHHHHHHhhhhhhhhh
Confidence 99999999998866655443
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=250.95 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
.-.+..++..++||..+++.|...++ ++|.+++++|+.++.++++++...++++ ..+++++......|.++...++
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999988885 9999999999999999988877543222 2356788888889988767888
Q ss_pred HHHHHhc-cccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcc
Q 041425 88 YFLLRGL-EYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATN 166 (366)
Q Consensus 88 ~~~~~al-~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 166 (366)
.+++.+. ++++++.++++.++.|+++.+++++ +|||+++++ ++|++++++|+.++.. +++.
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~-~~~~---------- 145 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNS-GGNL---------- 145 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhc-Cccc----------
Confidence 9999999 9999999999999999999999985 699999999 9999999999998852 1110
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 041425 167 YNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV 246 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 246 (366)
+....|++++++++++||.|.+..|+..++ + +...+.+++..+.+.+.+.....+.+.. .
T Consensus 146 ----------------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 205 (292)
T PRK11272 146 ----------------SGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLT--A 205 (292)
T ss_pred ----------------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCccc--c
Confidence 112579999999999999999999997654 2 3456678888888877777665332211 1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 247 LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 247 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
..+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++++.|+++..+
T Consensus 206 ~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 206 LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12346788999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccc
Q 041425 327 GKS 329 (366)
Q Consensus 327 ~~~ 329 (366)
.++
T Consensus 286 ~~~ 288 (292)
T PRK11272 286 GKY 288 (292)
T ss_pred HHh
Confidence 443
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=247.63 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
+..+++++++++||..+++.|...++ ++|..+.++|+.++.+.++++.. +++ .+++ .....|++.....+
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~~---~~~---~~~~---~~~~~g~~~~~~~~ 73 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFVA---RPK---VPLN---LLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhc---CCC---CchH---HHHHHHHHHHHHHH
Confidence 34567899999999999999998886 99999999999998776665442 211 1222 34445665545666
Q ss_pred HHHHHhccc-cCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcc
Q 041425 88 YFLLRGLEY-TSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATN 166 (366)
Q Consensus 88 ~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 166 (366)
.+++.++++ .+++.++++.++.|+++.+++++++|||+++++ +++++++++|+.++.. ++. .+
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~-~~~-~~-------- 137 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIE-DSL-NG-------- 137 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhcc-ccC-CC--------
Confidence 788889998 578999999999999999999999999999999 9999999999999852 111 00
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc--hhHHHHHHHHHHHHHHHHHHHHhcCC--
Q 041425 167 YNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQ--YSSTTIISFFGAIQSAILSLIIERNL-- 242 (366)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-- 242 (366)
.+....|+++++.++++|++|.+..|+..++.+++ .....+....+.+.........+++.
T Consensus 138 ---------------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (299)
T PRK11453 138 ---------------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATM 202 (299)
T ss_pred ---------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 01225799999999999999999999987654432 22333444444433333333333211
Q ss_pred -CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425 243 -PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM 321 (366)
Q Consensus 243 -~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~ 321 (366)
..+...+...|..++++++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|++++++|+
T Consensus 203 ~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv 282 (299)
T PRK11453 203 IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGL 282 (299)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 1111223457889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q 041425 322 YILLWGKS 329 (366)
Q Consensus 322 ~l~~~~~~ 329 (366)
++..+.++
T Consensus 283 ~l~~~~~~ 290 (299)
T PRK11453 283 YINVFGLR 290 (299)
T ss_pred HHHhcchh
Confidence 98777554
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=1.4e-31 Score=246.47 Aligned_cols=281 Identities=11% Similarity=0.099 Sum_probs=211.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCC--C-CCCHHHHHHHHH
Q 041425 1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNR--P-KLTIHILCQLFF 77 (366)
Q Consensus 1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~ 77 (366)
|+|+++.+|++++++++++||..+++.|.. ++ ++|.++.++|+.++.+++.++...++++.. + ..+++++.. ..
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LA 77 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HH
Confidence 788889999999999999999999999964 54 999999999999999888777654322110 0 013344433 33
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI 157 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 157 (366)
.+.++.+.++.++++|++++|+++++++.++.|+++.+++++++|||+++++ +.|++++++|+.++....+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~--- 148 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG--- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC---
Confidence 5556558999999999999999999999999999999999999999999999 9999999999999852110
Q ss_pred CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHH
Q 041425 158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSL 236 (366)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 236 (366)
+ . ...+++++++||.|.+..|+..++.. +......++...+.....+.
T Consensus 149 -------------------------~--~--~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 197 (296)
T PRK15430 149 -------------------------S--L--PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI-- 197 (296)
T ss_pred -------------------------C--c--cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--
Confidence 0 0 14678899999999999999754311 11222233333333322111
Q ss_pred HHhcCCCcccccCchh-HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHH
Q 041425 237 IIERNLPGWVLKGKLE-TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSI 315 (366)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~ 315 (366)
.+.+...+. ..+.. +..++..|+ .+.++|.++++++++.+++.++.+.+++|+++.+++++++||+|++.+++|++
T Consensus 198 -~~~~~~~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~ 274 (296)
T PRK15430 198 -ADSSTSHMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFA 274 (296)
T ss_pred -ccCCccccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 111111111 11222 233344454 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 041425 316 LVIVGMYILLWG 327 (366)
Q Consensus 316 lii~g~~l~~~~ 327 (366)
+|+.|+.+....
T Consensus 275 lI~~~~~v~~~~ 286 (296)
T PRK15430 275 FIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHH
Confidence 999887776543
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=2.8e-31 Score=244.38 Aligned_cols=284 Identities=13% Similarity=0.105 Sum_probs=214.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL 85 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (366)
+.+++++++++.++||.+++..|...++ ++|..+.++|+.++.++++++.. +++.++. + ++..+.+.++...
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~~---~~~~~~~---~-~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTVG---FPRLRQF---P-KRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHcc---ccccccc---c-HHHHHHHhHHHHH
Confidence 4678999999999999999999998887 99999999999999998887531 2111111 2 2233445555577
Q ss_pred HHHHHHHhccc----cCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425 86 TQYFLLRGLEY----TSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH 161 (366)
Q Consensus 86 ~~~~~~~al~~----~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 161 (366)
+..+++.++++ .+++.++++.++.|+++.+++++++|||+++++ ++|++++++|+.++.. ++...+.
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~-~~~~~~~-- 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLG-GDNGLSL-- 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheec-CCccchh--
Confidence 78888877754 577888999999999999999999999999999 9999999999999862 2110000
Q ss_pred CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 041425 162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERN 241 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 241 (366)
.+.+.+..+...|++++++++++||.|++..|+..++++ +... .. ..+.+.+.+.... +++
T Consensus 145 --------------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~~-~~~~~~l~~~~~~-~~~ 205 (295)
T PRK11689 145 --------------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--FF-ILTALALWIKYFL-SPQ 205 (295)
T ss_pred --------------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--HH-HHHHHHHHHHHHH-hcC
Confidence 000001112356999999999999999999999887644 3432 22 2333333333333 221
Q ss_pred CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425 242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM 321 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~ 321 (366)
. ... .+...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+
T Consensus 206 ~-~~~-~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv 282 (295)
T PRK11689 206 P-AMV-FSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGS 282 (295)
T ss_pred c-ccc-CCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhH
Confidence 1 111 12356777777774 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccc
Q 041425 322 YILLWGK 328 (366)
Q Consensus 322 ~l~~~~~ 328 (366)
++..+.+
T Consensus 283 ~~~~~~~ 289 (295)
T PRK11689 283 LLCWLAT 289 (295)
T ss_pred HHHhhhH
Confidence 8876533
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=1.1e-30 Score=240.09 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=224.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425 4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL 83 (366)
Q Consensus 4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (366)
.++.+++.+++++.+.|+..+.+.|...++ ++|..+.++|++++.++++++... ++ ++.+++++...+..|.+.
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~~~- 81 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGVSL- 81 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHHHH-
Confidence 446799999999999999999999999997 999999999999999988876532 11 124567888888888886
Q ss_pred HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425 84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP 163 (366)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 163 (366)
...+.+++++++|+|++.++++.++.|+++.+++. |++. + ..++.+++.|+.++. ..+...
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~-~~~~~~------ 142 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLL-PLGQDV------ 142 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheee-ecCCCc------
Confidence 88889999999999999999999999999998873 5543 3 456778899998875 221100
Q ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041425 164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 243 (366)
......|++++++++++||.|.+..|+..++++ +... .+....+++.+.++....+.+ .
T Consensus 143 ------------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~ 201 (293)
T PRK10532 143 ------------------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-A 201 (293)
T ss_pred ------------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-c
Confidence 011257999999999999999999999987754 4444 455566666666666543221 1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l 323 (366)
. .+...|..++++|++++.++|.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++|++|++.
T Consensus 202 ~---~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~ 278 (293)
T PRK10532 202 L---WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMG 278 (293)
T ss_pred c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 1 1223455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccch
Q 041425 324 LLWGKSKE 331 (366)
Q Consensus 324 ~~~~~~~~ 331 (366)
..+..+||
T Consensus 279 ~~~~~~~~ 286 (293)
T PRK10532 279 STLTIRRE 286 (293)
T ss_pred HHhcCCCC
Confidence 87665443
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.98 E-value=2.5e-30 Score=234.14 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 041425 20 FATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSA 99 (366)
Q Consensus 20 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 99 (366)
||.++++.|..++++.|+....+.|+..+.+++.++...+ .+++++.+....|.++..+++.++++|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 8999999999888778999999999999988887765322 245677788888888889999999999999999
Q ss_pred hhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccc
Q 041425 100 TFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISS 179 (366)
Q Consensus 100 ~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
++++++.++.|+++.+++++++|||+++++ +.|++++++|+.++.. +++
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~------------------------ 122 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN------------------------ 122 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc------------------------
Confidence 999999999999999999999999999999 9999999999999852 211
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHH
Q 041425 180 KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIY 258 (366)
Q Consensus 180 ~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (366)
.+....|+.++++++++|+.+.+..|+..++.+. +.....+++..+.+.+.+.....+++. .. +...|..+++
T Consensus 123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~ 196 (260)
T TIGR00950 123 --LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLY 196 (260)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHH
Confidence 0123689999999999999999999998876542 234444677888888877776543221 11 3356777888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425 259 CGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM 321 (366)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~ 321 (366)
.+++++.+++.++++++++.++.+++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus 197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999899999999999999999999999999999999999999999999999999999999986
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=5.2e-29 Score=230.35 Aligned_cols=281 Identities=13% Similarity=0.079 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425 14 VAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRG 93 (366)
Q Consensus 14 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 93 (366)
++--++-....++.|..+++-..|..+++.|+.++.+.+.+... ...+++++.+++++++++..|+++ +++..+.+.+
T Consensus 8 ~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 85 (302)
T TIGR00817 8 GLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33334444555788998886356999999999998877655521 122233456789999999999997 9999999999
Q ss_pred ccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccc
Q 041425 94 LEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHA 173 (366)
Q Consensus 94 l~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 173 (366)
++|++++.++++.++.|+++++++++++|||+++++ +.|+++++.|+.+.. .++ .
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~~~-~---------------- 140 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--DTE-L---------------- 140 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--CCc-c----------------
Confidence 999999999999999999999999999999999999 999999999998763 111 0
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC---cccc-
Q 041425 174 KMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGK--RFPCQYSSTTIISFFGAIQSAILSLIIERNLP---GWVL- 247 (366)
Q Consensus 174 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~- 247 (366)
+....|++++++++++|++|.+..|+..+ ++ ++...+.++...+++.+.|+....++... .+..
T Consensus 141 ---------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 210 (302)
T TIGR00817 141 ---------SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA 210 (302)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence 11257999999999999999999999887 54 46789999999999999998876543110 0100
Q ss_pred ----cCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425 248 ----KGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 248 ----~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l 323 (366)
.....+...++.+..+....+.++++++++.++++.++..+++|+++++++++++||+++..+++|+++++.|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 0001121122333323333445667899999999999999999999999999999999999999999999999999
Q ss_pred hhccccch
Q 041425 324 LLWGKSKE 331 (366)
Q Consensus 324 ~~~~~~~~ 331 (366)
+.+.|.++
T Consensus 291 ~~~~k~~~ 298 (302)
T TIGR00817 291 YSRVKAQK 298 (302)
T ss_pred HHHHhccC
Confidence 98765433
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=2.2e-27 Score=217.12 Aligned_cols=276 Identities=14% Similarity=0.137 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRE-RKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
..++.++++++|+...+..|...++ .++. .+++...+.++++++...+. ++.++..+++.+......++.+ ..++
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 77 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVAN-MVYF 77 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHH-HHHH
Confidence 3578899999999999999976655 4443 46677777777777765432 2333333444555555555555 9999
Q ss_pred HHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccc
Q 041425 88 YFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNY 167 (366)
Q Consensus 88 ~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 167 (366)
.++++++++.+++.++++.++.|+++.+++++++|||+++++ ++|+.+++.|+.++.. ++. .
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~-~~~-~---------- 139 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGL-SRF-A---------- 139 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhc-ccc-c----------
Confidence 999999999999999999999999999999999999999999 9999999999998852 111 0
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHH-HHHHHHHh-cCCCcc
Q 041425 168 NVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQS-AILSLIIE-RNLPGW 245 (366)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~ 245 (366)
.....|+.++++++++|++|.+..|+..++.++ ..........+.+.. .++..... .+...+
T Consensus 140 ---------------~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (281)
T TIGR03340 140 ---------------QHRRKAYAWALAAALGTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLKRHGRSM 203 (281)
T ss_pred ---------------ccchhHHHHHHHHHHHHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 011467788999999999999999887554332 211111222222221 22222211 011111
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425 246 VLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 246 ~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l 323 (366)
. ..+..++..++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|++++++|+++
T Consensus 204 ~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 204 F-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 1 1223456677888888999999999999999999999999999999999999999999999999999999999875
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=2.5e-27 Score=217.15 Aligned_cols=301 Identities=18% Similarity=0.245 Sum_probs=239.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCHHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERK-NRPKLTIHILCQLFFSALIGL 83 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 83 (366)
-++.+++.=+.+++-+.+...+....+.|++ |....++.++.-.++..++..+++++ ++.+..++++.+.++.+++.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D- 89 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD- 89 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-
Confidence 4566777777888888999999988877777 77778888877777766666554432 23333457777888889999
Q ss_pred HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425 84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP 163 (366)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 163 (366)
+.++++.+.|++|++.+.++++.++..+++++++++++|+|+++.+ ++|+++++.|+.+++..+....+
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~~----- 158 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSGS----- 158 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeecccccc-----
Confidence 9999999999999999999999999999999999999999999999 99999999999998743322111
Q ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhc-CC
Q 041425 164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIER-NL 242 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~ 242 (366)
.+.+.++...|+++++.|+++||++++..++..|+.+ ......+..+++.++..+...+.|. +.
T Consensus 159 --------------~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i 223 (334)
T PF06027_consen 159 --------------DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGI 223 (334)
T ss_pred --------------cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhh
Confidence 1123356689999999999999999999999999865 5778888888999998888887665 22
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHh
Q 041425 243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMY 322 (366)
Q Consensus 243 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~ 322 (366)
...+++. ..+. .+....++..+-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|.+
T Consensus 224 ~~~~w~~-~~~~-~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~v 301 (334)
T PF06027_consen 224 ESIHWTS-QVIG-LLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFV 301 (334)
T ss_pred hccCCCh-hhHH-HHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Confidence 2222222 2222 2222333566777788899999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchhhhh
Q 041425 323 ILLWGKSKEIEEF 335 (366)
Q Consensus 323 l~~~~~~~~~~~~ 335 (366)
+++..+.++.+++
T Consensus 302 vy~~~~~~~~~~~ 314 (334)
T PF06027_consen 302 VYNLAESPEEEAR 314 (334)
T ss_pred eEEccCCcccccc
Confidence 9998766554443
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=2.8e-26 Score=215.40 Aligned_cols=284 Identities=15% Similarity=0.174 Sum_probs=221.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKL--TIHILCQLFFSALIG 82 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 82 (366)
+.+..++.++--.+-.......|..++. ++ |..++.+|++++.+++..+.... .++.++. .+++++.++..|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455555555556666678889999987 99 99999999999988765554322 2222333 345788899999999
Q ss_pred HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425 83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL 162 (366)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~ 162 (366)
...+...+.|+++++++.++++..+.|+++++++++++|||+++++ +.++++++.|+.+.+. + +
T Consensus 125 -~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~-~------- 188 (350)
T PTZ00343 125 -LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-K-E------- 188 (350)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-c-c-------
Confidence 5556778899999999999999999999999999999999999999 9999999999999862 1 1
Q ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CchhHHHHHHHHHHHHHHHHHH
Q 041425 163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP------CQYSSTTIISFFGAIQSAILSL 236 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~ 236 (366)
. +....|++++++++++|+++++..|+..++.+ ++.....++...+.+.++|+..
T Consensus 189 ----~---------------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~ 249 (350)
T PTZ00343 189 ----L---------------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL 249 (350)
T ss_pred ----c---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11267999999999999999999999887532 2334555568889999999887
Q ss_pred HHhcC--CCccc----ccCchhHHHHHHHHHHHHHHHHHHHHH----HHhhcCcceeeeccchhHHHHHHHHHHHcCCcc
Q 041425 237 IIERN--LPGWV----LKGKLETIGVIYCGMVGSGLCYVGMSW----CVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERI 306 (366)
Q Consensus 237 ~~~~~--~~~~~----~~~~~~~~~~l~~g~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~ 306 (366)
..|.. ...+. ......+..+++ .++.+++++.+++. +++++++...++..+++|+++++++++++||++
T Consensus 250 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~l 328 (350)
T PTZ00343 250 FFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQV 328 (350)
T ss_pred HHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCC
Confidence 65431 11110 001112233444 34467888888884 999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhhhhcc
Q 041425 307 YLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 307 s~~~~iG~~lii~g~~l~~~~ 327 (366)
|+.+++|+++++.|++++++-
T Consensus 329 t~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 329 TLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred chHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999998764
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=8.6e-26 Score=203.96 Aligned_cols=248 Identities=9% Similarity=0.059 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCHH-HHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERK-----NRPKLTIH-ILCQLFFSALI 81 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~-~~~~~~~~g~~ 81 (366)
||++++++++++||..+++.|. .++ ++|.+++++|++++.++++++...++++ +.++.+++ .+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5899999999999999999997 554 9999999999999998887766443321 11112223 34456677777
Q ss_pred HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425 82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH 161 (366)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 161 (366)
. ..++.++++|++++++++++++.++.|+++++++++++|||+++++ +++++++++|+.++...++
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~------- 145 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG------- 145 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence 6 8999999999999999999999999999999999999999999999 9999999999998852110
Q ss_pred CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 041425 162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERN 241 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 241 (366)
+. . .+++.++++|+.|.+..|+..++ +. ....... ........+.... ...
T Consensus 146 ---------------------~~-~---~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~-~~~ 196 (256)
T TIGR00688 146 ---------------------SL-P---WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLLQ-TDF 196 (256)
T ss_pred ---------------------Cc-h---HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHHH-hcc
Confidence 00 1 35788999999999999997653 22 2222111 1111111111111 111
Q ss_pred CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHH
Q 041425 242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSV 301 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~ 301 (366)
......++...|..+++.|+. +.++|.++++++++.++++++...|++|+++.+++.++
T Consensus 197 ~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 197 ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 111111122367788888875 88999999999999999999999999999999999764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=190.98 Aligned_cols=284 Identities=20% Similarity=0.319 Sum_probs=216.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425 4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL 83 (366)
Q Consensus 4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (366)
++..++..+.++..+.|+......|...+...++....+.|...+.+...+..........+ ..+.+.+..+.+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGL 80 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHH
Confidence 45567888899999999999999998876535666666779988888744433211111111 1122455666666666
Q ss_pred HHHHHHHHHhccccCchhhhhhccchhHHHHHHhh-hhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425 84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLAL-PFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL 162 (366)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~ 162 (366)
..++.+++.++++++++.++++.++.|+++.++++ +++|||+++.+ +.++.+++.|++++...++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~~~----- 149 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGGGG----- 149 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCcch-----
Confidence 99999999999999999999999999999999997 77799999999 9999999999999963221100
Q ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHH-HHHHHHHHHHHHHHHHHhcC
Q 041425 163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTT-IISFFGAIQSAILSLIIERN 241 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 241 (366)
.. ...|+.+++.+++++|.+.+..|+.. +.+ +..... ++.. ............ +
T Consensus 150 -------------------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~ 204 (292)
T COG0697 150 -------------------IL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLS-G 204 (292)
T ss_pred -------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhc-c
Confidence 00 47899999999999999999999987 323 333443 3333 111111111111 1
Q ss_pred CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHH
Q 041425 242 LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGM 321 (366)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~ 321 (366)
.. .......+..+.+.|++.+.+++.++++++++.++..++.+.+++|+++.+++++++||+++..+++|+.+++.|+
T Consensus 205 ~~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~ 282 (292)
T COG0697 205 FG--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGV 282 (292)
T ss_pred cc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 11 1123356888888999888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 041425 322 YILLWG 327 (366)
Q Consensus 322 ~l~~~~ 327 (366)
.+...+
T Consensus 283 ~l~~~~ 288 (292)
T COG0697 283 LLASLR 288 (292)
T ss_pred HHHhcc
Confidence 988776
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=176.85 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=223.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccC-CC--CCCHHHHHHHHH
Q 041425 1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKN-RP--KLTIHILCQLFF 77 (366)
Q Consensus 1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~-~~--~~~~~~~~~~~~ 77 (366)
|+ ++..+|+++.+.+-++||..+...| .++. .++.++...|.+-+.++++.+....++.+ .. ..+++.+....+
T Consensus 1 ~~-~~~~~Gil~~l~Ay~lwG~lp~y~k-ll~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l 77 (293)
T COG2962 1 MA-KDSRKGILLALLAYLLWGLLPLYFK-LLEP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLAL 77 (293)
T ss_pred CC-CcccchhHHHHHHHHHHHHHHHHHH-HHcc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHH
Confidence 55 5668999999999999999999999 5665 99999999999999998877765443321 11 124567777777
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI 157 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 157 (366)
.++.. ..++..|.+|.++...-++++=++..|++.++++++++|||+++.| ++++.++.+||....+..|+..
T Consensus 78 ~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~lp 150 (293)
T COG2962 78 TALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGSLP 150 (293)
T ss_pred HHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCCCc
Confidence 78777 9999999999999999999999999999999999999999999999 9999999999999876443322
Q ss_pred CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 041425 158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLI 237 (366)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (366)
..++.-+++|+.|...-|+..- + ..+-...-...-....+.+.+.
T Consensus 151 --------------------------------wval~la~sf~~Ygl~RK~~~v--~-a~~g~~lE~l~l~p~al~yl~~ 195 (293)
T COG2962 151 --------------------------------WVALALALSFGLYGLLRKKLKV--D-ALTGLTLETLLLLPVALIYLLF 195 (293)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHhcCC--c-hHHhHHHHHHHHhHHHHHHHHH
Confidence 3566678899999988877542 2 2333333333333333333333
Q ss_pred HhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425 238 IERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV 317 (366)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li 317 (366)
.+...+.........+..++..|. .++++..++..+-|+.+-+..+.++|.+|..-.+++.+++||+++..+++..++|
T Consensus 196 l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~I 274 (293)
T COG2962 196 LADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFI 274 (293)
T ss_pred HhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333221112134456777777787 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccc
Q 041425 318 IVGMYILLWGKS 329 (366)
Q Consensus 318 i~g~~l~~~~~~ 329 (366)
.+|++++....-
T Consensus 275 W~aL~l~~~d~l 286 (293)
T COG2962 275 WLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.90 E-value=8.7e-22 Score=167.61 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY 88 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (366)
.++.++.+...--.-..+.|..... +.+...+.+|..++.+++++++..+ +.+.++++++.+...|+.. ...+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHH-HHHHH
Confidence 5778888888777778888988887 9999999999999999999887432 2356789999999999998 89999
Q ss_pred HHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccc
Q 041425 89 FLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYN 168 (366)
Q Consensus 89 ~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 168 (366)
+||.+++..|.+.+..+.++-|+.++.++- | +.++ ...+.+.+.|+.++. ..++..
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R---r~~d------~vwvaLAvlGi~lL~-p~~~~~----------- 142 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS---R---RLRD------FVWVALAVLGIWLLL-PLGQSV----------- 142 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc---c---chhh------HHHHHHHHHHHHhhe-eccCCc-----------
Confidence 999999999999999999999999887653 2 2445 778888999999885 222111
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q 041425 169 VTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLK 248 (366)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 248 (366)
...+..|..+++.++.+|+.|++..+|..+..+ ...-...-+..++++..|+...... ....
T Consensus 143 -------------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag----~~l~ 204 (292)
T COG5006 143 -------------WSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG----PALF 204 (292)
T ss_pred -------------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc----hhhc
Confidence 133479999999999999999999999986534 3567778888899999888875322 1112
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 249 GKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 249 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
++.....-+..+++.+++.|.+-..++++.+....+.+.++||.++.+.+++++||.+|..||.|+++|+.+..-..+..
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 33455666778889999999999999999999999999999999999999999999999999999999999877655544
Q ss_pred cc
Q 041425 329 SK 330 (366)
Q Consensus 329 ~~ 330 (366)
+|
T Consensus 285 ~~ 286 (292)
T COG5006 285 RK 286 (292)
T ss_pred CC
Confidence 33
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.90 E-value=2.7e-25 Score=189.98 Aligned_cols=292 Identities=13% Similarity=0.121 Sum_probs=217.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT 84 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (366)
+.++|.++..++-++-..+.+..| .++ .+|.+..-.|++.-.++-.|..++.....+ .+.....+++++|+.+ +
T Consensus 35 ~p~~gl~l~~vs~ff~~~~vv~t~-~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~--gp~g~R~~LiLRg~mG-~ 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSCMVVSTK-VLE--NDPMELASFRLLVRMLITYPCLIYYMQPVI--GPEGKRKWLILRGFMG-F 108 (346)
T ss_pred CCccCceehhhHHHHhhHHHhhhh-hhc--cChhHhhhhhhhhehhhhheEEEEEeeeee--cCCCcEEEEEeehhhh-h
Confidence 466888888888444444444444 443 689999999987777777776654333221 1234445678899999 8
Q ss_pred HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc-CCCCCC
Q 041425 85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI-SNPHLP 163 (366)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~-~~~~~~ 163 (366)
.+..+.|||+.|++.++++++.+++|++|.+++|+++||+.++.+ .++..+.+.||++++- .+.. +..
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIvR--PpFlFG~~--- 177 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIVR--PPFLFGDT--- 177 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEec--CCcccCCC---
Confidence 888999999999999999999999999999999999999999999 9999999999999962 2111 110
Q ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041425 164 ATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP 243 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 243 (366)
+.+..+++.+....|...++.++++-|--.++.|++.|+.+..+ ...+....+.+.........+ . -
T Consensus 178 ----------t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~m-svsyf~~i~lV~s~I~~~~ig-~-~ 244 (346)
T KOG4510|consen 178 ----------TEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIM-SVSYFSLITLVVSLIGCASIG-A-V 244 (346)
T ss_pred ----------ccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEE-EehHHHHHHHHHHHHHHhhcc-c-e
Confidence 01111122344456778888888888888889999888754333 334444444444443333222 1 1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l 323 (366)
.++. ...+|+.++.+|+. +++++.+...++++..+..++++.+.+.+++.+++.++|||.|+++.|.|+++++.+.+.
T Consensus 245 ~lP~-cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~ 322 (346)
T KOG4510|consen 245 QLPH-CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW 322 (346)
T ss_pred ecCc-cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence 2221 34678888888985 789999999999999999999999999999999999999999999999999999998877
Q ss_pred hhccc
Q 041425 324 LLWGK 328 (366)
Q Consensus 324 ~~~~~ 328 (366)
...+|
T Consensus 323 ~a~~k 327 (346)
T KOG4510|consen 323 VALKK 327 (346)
T ss_pred HHHHH
Confidence 66544
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.86 E-value=5.8e-20 Score=168.34 Aligned_cols=278 Identities=16% Similarity=0.101 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY 88 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (366)
+++++++++++||...+..|+.. |.++.++. |..++.+++..+....+.++ +..++.+...++.|+.. ..++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w-~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFW-ALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHH-Hhhhh
Confidence 68899999999999999999764 57787765 77778777666554433221 12245555566666665 99999
Q ss_pred HHHHhccccCchhhhhhcc-chhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccc
Q 041425 89 FLLRGLEYTSATFLCAFLN-TVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNY 167 (366)
Q Consensus 89 ~~~~al~~~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 167 (366)
+++.+.++++.+.+..+.+ +.++++.+.+.+++||+.+++++. -.++|+++.++|+.++...+++..
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~--~~~~g~~l~l~G~~l~~~~~~~~~---------- 142 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTL--LGLLALILIIIGVYLTSRSKDKSA---------- 142 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHhHheEEecccccc----------
Confidence 9999999999999999988 888999999999999998776411 115678888889888752111100
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHH----HHHHHHHHHHHHHhcCCC
Q 041425 168 NVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISF----FGAIQSAILSLIIERNLP 243 (366)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~ 243 (366)
++.+..+..+|++++++++++|+.|.+..|+.. ++ +.+..+.+.. .+.+...+. . +. .
T Consensus 143 ----------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~~~~~~~~---~-~~-~ 204 (290)
T TIGR00776 143 ----------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--VD-GLSVLLPQAIGMVIGGIIFNLGH---I-LA-K 204 (290)
T ss_pred ----------ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC--CC-cceehhHHHHHHHHHHHHHHHHH---h-cc-c
Confidence 000002336799999999999999999999863 33 4556444433 333333222 1 11 1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHh-hcCcceeeeccchhHHHHHHHHHHHcCCccchhhH----HHHHHHH
Q 041425 244 GWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVK-KRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSA----LGSILVI 318 (366)
Q Consensus 244 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~----iG~~lii 318 (366)
++ .+..++..+..|++ ..+++.+|..+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++ +|+++++
T Consensus 205 ~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi 280 (290)
T TIGR00776 205 PL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILII 280 (290)
T ss_pred ch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHH
Confidence 11 12334444447886 7999999999999 99999999999999999999999999999999999 9999999
Q ss_pred HHHhhhhcc
Q 041425 319 VGMYILLWG 327 (366)
Q Consensus 319 ~g~~l~~~~ 327 (366)
.|+.+....
T Consensus 281 ~~~~l~~~~ 289 (290)
T TIGR00776 281 IAANILGIG 289 (290)
T ss_pred HHHHHHhcc
Confidence 999886543
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=2.2e-19 Score=165.91 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHH
Q 041425 37 HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLL 116 (366)
Q Consensus 37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll 116 (366)
|..+++.++....++-.+.....+++ +.++..+...+..+++. .++..+.+.|++|.|.+...++....|+.++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~ 107 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMIL 107 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence 88889999888887776665433312 23345566677788888 899999999999999999999999999999999
Q ss_pred hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425 117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC 196 (366)
Q Consensus 117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa 196 (366)
+.+++|+|.++.+ +.++++..+|+++..+.+..... .++....+...|+++.+++.
T Consensus 108 ~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~~------------------~~~~~~~~~~~G~~ll~~sl 163 (303)
T PF08449_consen 108 GVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSSS------------------SSNSSSFSSALGIILLLLSL 163 (303)
T ss_pred HHHhcCccccHHH------HHHHHHHHhhHheeeeccccccc------------------ccccccccchhHHHHHHHHH
Confidence 9999999999999 99999999999998643222111 11111122234999999999
Q ss_pred HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHH--HhcCCCcc--cccCchhHHHHHHHHHHHHHHHHHHH
Q 041425 197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLI--IERNLPGW--VLKGKLETIGVIYCGMVGSGLCYVGM 271 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~ 271 (366)
++.|...+.+++..++++ ++....++...++.+...+.... .++....+ ....+..+..++... +++.+++.+.
T Consensus 164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~~~i 242 (303)
T PF08449_consen 164 LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQFFI 242 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999988665 56788899999999988888877 32211111 112333444444444 4678899999
Q ss_pred HHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425 272 SWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 272 ~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
+..+++.++...+++..++-+++++++++++++++++.+|+|.++++.|..++...|+|+
T Consensus 243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 243 FYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999998877665
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=2.8e-19 Score=160.48 Aligned_cols=235 Identities=15% Similarity=0.158 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 70 HILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 70 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+.....+....+. +++++.++.|+++++++..+++.+++-+||.+++.++..||+++.+ ++++.+++.|++++
T Consensus 157 ~~ak~sl~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiV 229 (416)
T KOG2765|consen 157 QTAKLSLFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIV 229 (416)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEE
Confidence 3444556666777 9999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchh---HHHHHHHH
Q 041425 150 TLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYS---STTIISFF 226 (366)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~---~~~~~~~~ 226 (366)
+.++... .++....+...|+++++++|+.||+|.++.||-..+..+... ...+..++
T Consensus 230 t~~~s~~--------------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLf 289 (416)
T KOG2765|consen 230 TMGDSKQ--------------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLF 289 (416)
T ss_pred Eeccccc--------------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 7533221 112224566899999999999999999999998776532222 23344455
Q ss_pred HHHHHHHHHHHHhc-CCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCc
Q 041425 227 GAIQSAILSLIIER-NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER 305 (366)
Q Consensus 227 ~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~ 305 (366)
..+++.|..++... ..+..+.+.......+++.+++.++++-.+|.++.-..++..++.-+.++...+++.+.++-|.+
T Consensus 290 nllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~ 369 (416)
T KOG2765|consen 290 NLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH 369 (416)
T ss_pred HHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC
Confidence 55566655555433 33455555556777888889999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhhhhccccch
Q 041425 306 IYLGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 306 ~s~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
+|+.+++|...|++|.+.++......
T Consensus 370 ~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 370 PSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred CCHHHHHHHHHHHHHHhheecccccc
Confidence 99999999999999999988755433
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.80 E-value=6.5e-19 Score=159.75 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=220.5
Q ss_pred HHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCch
Q 041425 23 VNAFLRKIIDR-GLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSAT 100 (366)
Q Consensus 23 ~~~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 100 (366)
.....|+.++. +.+ |..++..+...+.+.++.....+..+..+..++..+..++..|+.. .++..+-+.++.+.+++
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVS 110 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchh
Confidence 34467888773 233 8888888888888777776655554443333557788888999998 99999999999999999
Q ss_pred hhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccccccccc
Q 041425 101 FLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSK 180 (366)
Q Consensus 101 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
..+.+..++|++++++++++.+|+.++.. +..++..+.|+.+.+..+ .+
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~e-------------~~------------ 159 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVTE-------------LS------------ 159 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeecc-------------cc------------
Confidence 99999999999999999999999999999 999999999999986421 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcc--cCC-CchhHHHHHHHHHHHHHH-HHHHHHhcCCCc--ccccCchhHH
Q 041425 181 KTERWIIGSIFLIAGCTTWSSWFLMQARIGK--RFP-CQYSSTTIISFFGAIQSA-ILSLIIERNLPG--WVLKGKLETI 254 (366)
Q Consensus 181 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~--~~~~~~~~~~ 254 (366)
-...|.+.++++.+..+..+++.+++.+ +++ ++.+...++...+.+.++ |+....+++... ..........
T Consensus 160 ---fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~ 236 (316)
T KOG1441|consen 160 ---FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL 236 (316)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH
Confidence 1289999999999999999999999984 322 578889999999999999 877776553320 0001112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhhh
Q 041425 255 GVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEE 334 (366)
Q Consensus 255 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 334 (366)
..++.. ++....+...+..+.+++|...++.+...-++.+..|+++|+++.|+.+..|+++.++|+++|++.|.+++++
T Consensus 237 ~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 237 ILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333333 4555667778889999999999999999999999999999999999999999999999999999988766543
No 21
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.3e-14 Score=129.29 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHhhhcc----CCCC------CCHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRG---LNHLVIVAYRQSISVVFLAPIVYFRERK----NRPK------LTIHILCQ 74 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~------~~~~~~~~ 74 (366)
.-++.++...+.++......|+....+ +.|...++.--++-.++.....+...|+ ..+. ..+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 567788888999999999999887654 6677777777777777776666554322 1111 14567778
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcC
Q 041425 75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKG 154 (366)
Q Consensus 75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~ 154 (366)
+.+.+++. .+.+.++|.++.+.+++..++..++..+.|+++..+++++|+++.| |.++++.+.|+.++.....
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence 88888887 8888899999999999999999999999999999999999999999 9999999999999953222
Q ss_pred cccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-chhHHHHHHHHHHHHHHH
Q 041425 155 KLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPC-QYSSTTIISFFGAIQSAI 233 (366)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 233 (366)
+..+ ..+....++...|....+.+++.-+...++-++..|+.+. .........++|.+..+.
T Consensus 168 ~~~~-----------------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l 230 (345)
T KOG2234|consen 168 SPTG-----------------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLL 230 (345)
T ss_pred CCCC-----------------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 1111 1112335677899999999999999999999999986443 333344445555555554
Q ss_pred HHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHH
Q 041425 234 LSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALG 313 (366)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG 313 (366)
..+..+.+...|. .--.+|-...+.-++..+++=.+....+|+.+-..=.....+..+++.+.++.+++-+||....+|
T Consensus 231 ~~~~~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG 309 (345)
T KOG2234|consen 231 TILLQDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLG 309 (345)
T ss_pred HHhhccccccccC-CccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHH
Confidence 4444332211111 111233334444444555566667777888888888888889999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccch
Q 041425 314 SILVIVGMYILLWGKSKE 331 (366)
Q Consensus 314 ~~lii~g~~l~~~~~~~~ 331 (366)
..+++.++.+|...+.++
T Consensus 310 ~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 310 ALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHhhcCCccc
Confidence 999999999999555544
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.68 E-value=2.5e-17 Score=140.54 Aligned_cols=284 Identities=14% Similarity=0.164 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL 85 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (366)
++++.+.=+-+++-......+......|++ |...+|+.+..-+++-.+++.+|.+ .-+..|+..++.++.. +-
T Consensus 17 li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~~~~~~~hYilla~~D-VE 90 (336)
T KOG2766|consen 17 LIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-----YIKAKWRHYILLAFVD-VE 90 (336)
T ss_pred hheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----HHHHHHHHhhheeEEe-ec
Confidence 344444433344444444455555554454 7788899998888888888876542 2235566688888888 88
Q ss_pred HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCc
Q 041425 86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPAT 165 (366)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~ 165 (366)
++++...|.+|++....+++-.-..+.+.+++|+++|.|.++.+ +.|+.+|+.|++++++.+-. .+.
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV~-agd------ 157 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDVH-AGD------ 157 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeeec-ccc------
Confidence 88999999999999999999999999999999999999999999 99999999999999743211 111
Q ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 041425 166 NYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGW 245 (366)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 245 (366)
+.+..+..+|+++.+++|-+||+.++..+.+.|+.+ ......+..++|++....-.++...+....
T Consensus 158 -------------~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl 223 (336)
T KOG2766|consen 158 -------------RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVSTL 223 (336)
T ss_pred -------------ccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceeeE
Confidence 112355579999999999999999999999999855 578889999999999998855422222222
Q ss_pred cccCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425 246 VLKGKLETIGVIYC-GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 246 ~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~ 324 (366)
++ . +....++ ..++.++-|.+.-..+|..+++..+.-....-.++.++ ..||-+.+|...+..+.+..|.+++
T Consensus 224 ~w--~--~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 224 HW--D--SAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred ee--h--HHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 21 1 2222222 33344455566667788899999999999999999988 6788889999999999999999998
Q ss_pred hcccc
Q 041425 325 LWGKS 329 (366)
Q Consensus 325 ~~~~~ 329 (366)
..+++
T Consensus 298 s~re~ 302 (336)
T KOG2766|consen 298 STREK 302 (336)
T ss_pred ecccc
Confidence 54433
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.66 E-value=3e-15 Score=126.42 Aligned_cols=258 Identities=13% Similarity=0.103 Sum_probs=200.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHH
Q 041425 37 HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLL 116 (366)
Q Consensus 37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~ll 116 (366)
...++++++..-.++-=.+..++++.+ .+...-..+..++... .++....+.|++|.|-....+-.+..|+-++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~---~D~t~~~~YaAcs~sY-LlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTE---IDNTPTKMYAACSASY-LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccccc---ccCCcchHHHHHHHHH-HHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 345566666666655434333333222 2212222334444444 888899999999999999988999999999999
Q ss_pred hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425 117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC 196 (366)
Q Consensus 117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa 196 (366)
+.++.+++.++++ ...+++.++|+++.....+..... .+.....|.++.+++-
T Consensus 129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv~g~---------------------e~~t~g~GElLL~lSL 181 (337)
T KOG1580|consen 129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKVGGA---------------------EDKTFGFGELLLILSL 181 (337)
T ss_pred ehhhhcccccHHH------HHHHHHHHHHHHHhhccccccCCC---------------------cccccchHHHHHHHHH
Confidence 9999999999999 999999999999986432322211 1245579999999999
Q ss_pred HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc--CCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 041425 197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER--NLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSW 273 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 273 (366)
..-+.....+.+..+.+. ...+++++..+++.+.+..-.++.+. ++..+....|..|+-+..+++ ++++++++.+.
T Consensus 182 ~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~ 260 (337)
T KOG1580|consen 182 AMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFK 260 (337)
T ss_pred HhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHH
Confidence 999999999999887664 45778999999999998887777543 112222334577888888887 79999999999
Q ss_pred HHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 274 CVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 274 ~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
-+...+|...+++...+-+++++.+.++|+.+++..||+|..+++.|...-..
T Consensus 261 tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 261 TVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 99999999999999999999999999999999999999999999999876543
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.66 E-value=4.3e-16 Score=119.21 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNR-PKLTIHILCQLFFSALIGLTLT 86 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 86 (366)
...+++++++++|+...++.|..++. +||...++.|.....+++..+....++... ...+.|.|..+.+.|+.+ .++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls 80 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS 80 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence 46889999999999999999988885 999999999999999988888775554332 234778999999999888 999
Q ss_pred HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
+.+||+|++...++.+..+..++|+++.+++++++|||++..+ ++|+++..+|+++++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999 999999999998874
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.61 E-value=3.3e-14 Score=126.33 Aligned_cols=230 Identities=12% Similarity=0.116 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425 68 TIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV 147 (366)
Q Consensus 68 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 147 (366)
++++..++.+.+++. .+.+.+.++++++++++..+++.++..++|++++++++|+|+++.| |.++.+.+.|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence 568888999999997 9999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHH
Q 041425 148 LLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFF 226 (366)
Q Consensus 148 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~ 226 (366)
++...+....+. +. ++....+....+...|.++.++++++-++..++.++..|+.+ +......+...+
T Consensus 86 lv~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~ 154 (244)
T PF04142_consen 86 LVQLSSSQSSDN-SS----------SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLF 154 (244)
T ss_pred eeecCCcccccc-cc----------ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 985322211110 00 000011123456689999999999999999999999998754 334444455666
Q ss_pred HHHHHHHHHHHHhcC-CCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCc
Q 041425 227 GAIQSAILSLIIERN-LPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRER 305 (366)
Q Consensus 227 ~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~ 305 (366)
+.+..++.....+.+ ..+... ..+|-...+.-++..+++=++....+|+.+...=+....+..+.+.++++++|+.+
T Consensus 155 gi~~~~~~~~~~~~~~~~~~g~--f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~ 232 (244)
T PF04142_consen 155 GILFNLLALLLSDGSAISESGF--FHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFP 232 (244)
T ss_pred HHHHHHHHHhcccccccccCCc--hhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666665554443221 111111 11222223334445556666678889999999999999999999999999999999
Q ss_pred cchhhHHHHHHH
Q 041425 306 IYLGSALGSILV 317 (366)
Q Consensus 306 ~s~~~~iG~~li 317 (366)
+|....+|+.++
T Consensus 233 ~s~~f~lg~~~V 244 (244)
T PF04142_consen 233 PSLSFLLGAALV 244 (244)
T ss_pred CchHHhhheecC
Confidence 999999998653
No 26
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.6e-14 Score=126.87 Aligned_cols=265 Identities=13% Similarity=0.133 Sum_probs=206.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHH
Q 041425 36 NHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFL 115 (366)
Q Consensus 36 ~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~l 115 (366)
++..+.+.+.+.+.+.-...+..++.+ . ..++.+..+...++.+ .+...|.|.|++|.+-....+-.+.-.+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~--~-~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE--L-SGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc--C-CCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 466677777766666655444333222 2 2234556667778888 88999999999999999999999999999999
Q ss_pred HhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHH
Q 041425 116 LALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAG 195 (366)
Q Consensus 116 la~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 195 (366)
++.+++|.|.+..+ .+...+.-.|+.+..+.+.+.. .++.+.++...|+.+....
T Consensus 126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~s-------------------~~~~g~~ns~~G~~Ll~~~ 180 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSDS-------------------SSKSGRENSPIGILLLFGY 180 (327)
T ss_pred HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCCC-------------------ccccCCCCchHhHHHHHHH
Confidence 99999999999999 8888888899988865432211 1122346778999999999
Q ss_pred HHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCchhHHHHHHHHHHHHHHHHHHHH
Q 041425 196 CTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGW--VLKGKLETIGVIYCGMVGSGLCYVGMS 272 (366)
Q Consensus 196 a~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~~ 272 (366)
-.+-+..+..++++.+++. ++.+++++..+++++......+..+...+.. .-.++..++-++.... ++++++.+.+
T Consensus 181 L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~ 259 (327)
T KOG1581|consen 181 LLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIF 259 (327)
T ss_pred HHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheeh
Confidence 9999999999999998754 5788999999999998887744322211111 1123345555555555 6789999999
Q ss_pred HHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 273 WCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 273 ~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
+-+++.++...+.++.++-++++.++.+.+|.++++.||.|..+++.|+.+-...++|
T Consensus 260 ~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 260 YTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887655444
No 27
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.54 E-value=2.4e-13 Score=104.20 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC 267 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 267 (366)
..++++++++++++..++.|-..++.+ |...++.+.....+.+.......++ .+....-++..|..++..|+ .++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence 468999999999999999999888754 5677888888877777776666443 22221124577888888885 78999
Q ss_pred HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
..+|++++|..+++.+.++..+.|+++++++++++||++|..+++|+++|.+|.+++.+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999887654
No 28
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.54 E-value=1.8e-14 Score=114.98 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 041425 18 FGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYT 97 (366)
Q Consensus 18 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 97 (366)
++||...++.|+..++ .||...+++|+..+.+ ++++..+.+++...+.+++++......+++....++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999999987 9999999999999998 6666555555444566788888889899886699999999999999
Q ss_pred CchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 98 SATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 98 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
+++.++++.++.|+++.+++++++||++++.+ ++|+.+++.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999874
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.4e-12 Score=111.60 Aligned_cols=291 Identities=10% Similarity=0.071 Sum_probs=215.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHH--HHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVA--YRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG 82 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (366)
+.+.++.++.-.+.--.+.+..|..+.+ ++ |..+.. ++.+...+.+...-..+ --+.++++++..+..+...++-
T Consensus 10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f-~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 10 QSSPLLSALFYCLSSILMTVVNKIVLSSYNF-PMGLLLMLLQSLASVLVVLVLKRLG-LVNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHhc-eeecCCcChHHHHHHccHHHHH
Confidence 3455566666556666677788988775 33 333333 67766666555443221 1234567889999999999987
Q ss_pred HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCC
Q 041425 83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHL 162 (366)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~ 162 (366)
.++...--.+++|++.+..+++....|+++++....++|.+++... +.++...++|.......+-
T Consensus 88 -~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~~d~-------- 152 (314)
T KOG1444|consen 88 -VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAFTDL-------- 152 (314)
T ss_pred -HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhccccc--------
Confidence 8899999999999999999999999999999999999999999999 9999999888888753211
Q ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc-
Q 041425 163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER- 240 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~- 240 (366)
.-...|..+++...++-+.+.+..|+-.+..+ ......++..+.+...+.....+.++
T Consensus 153 --------------------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~ 212 (314)
T KOG1444|consen 153 --------------------SFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGEL 212 (314)
T ss_pred --------------------eecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcch
Confidence 11146899999999999999999999776432 34667788888888888777776553
Q ss_pred CCCccc---ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425 241 NLPGWV---LKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV 317 (366)
Q Consensus 241 ~~~~~~---~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li 317 (366)
+....+ ......+..+...++ .+..-..+..++.+..++...++++..+...+.+-..++.|++.++...+|..+-
T Consensus 213 ~~l~~~~~~~~~~~~~~~~~lScv-~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~ 291 (314)
T KOG1444|consen 213 DALSLNFDNWSDSSVLVVMLLSCV-MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVG 291 (314)
T ss_pred HHHHhhcccccchhHHHHHHHHHH-HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHH
Confidence 100111 112233445555555 4555555688999999999999999778777877777778888999999999999
Q ss_pred HHHHhhhhccccchhhh
Q 041425 318 IVGMYILLWGKSKEIEE 334 (366)
Q Consensus 318 i~g~~l~~~~~~~~~~~ 334 (366)
+.|-++|...+.++++.
T Consensus 292 ~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 292 FFGGVLYSYATFRKKKQ 308 (314)
T ss_pred hhhhhHHhhhhhhhccC
Confidence 99999998876555444
No 30
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.50 E-value=3.7e-12 Score=112.04 Aligned_cols=252 Identities=15% Similarity=0.139 Sum_probs=183.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHH
Q 041425 37 HLVIVAYRQSISVVFLAPIVYFRERKN---RPKLTIHILC-QLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVI 112 (366)
Q Consensus 37 ~~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~ 112 (366)
|..++.++.++-.++-.......+++. +-..+|++.+ ++...|+.+ ++.-.+.+++++|++.+..++..+..++|
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence 777777777666555544443333222 2245777665 555677777 99999999999999999999999999999
Q ss_pred HHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHH
Q 041425 113 TFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFL 192 (366)
Q Consensus 113 ~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 192 (366)
+.+++.++.-||+++.- ..-+++...|+.+.++.+.+ + ...|..+.
T Consensus 124 IllFs~if~lEk~~w~L------~l~v~lI~~Glflft~KsTq-----------f-----------------~i~Gf~lv 169 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTYKSTQ-----------F-----------------NIEGFFLV 169 (349)
T ss_pred HHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEecccc-----------e-----------------eehhHHHH
Confidence 99999999999999988 77777888888888643221 1 15677788
Q ss_pred HHHHHHHHHHHHHHHHhcccC----CCchhHHHHHHHHHHHHHHHHHHHHhcCCC-----cccccCch-hHHHHHHHHHH
Q 041425 193 IAGCTTWSSWFLMQARIGKRF----PCQYSSTTIISFFGAIQSAILSLIIERNLP-----GWVLKGKL-ETIGVIYCGMV 262 (366)
Q Consensus 193 l~aa~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~l~~g~~ 262 (366)
.+++++-++--.+.+.+.++. ++|.+..........+.++|..+..|+... .+...++. .+..+..++.
T Consensus 170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l- 248 (349)
T KOG1443|consen 170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL- 248 (349)
T ss_pred HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-
Confidence 777777666555555555443 357778888888888888888888777322 22222222 2222322222
Q ss_pred HHHHHHHH---HHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425 263 GSGLCYVG---MSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 263 ~~~~~~~~---~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~ 324 (366)
++.+++.+ -+....+++....++.+...-+-+.+++..+.+|+++...|.|..+.+.|+.++
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 33333333 345677888999999999999999999999999999999999999999999988
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.38 E-value=1.7e-12 Score=103.58 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425 197 TTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVK 276 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 276 (366)
++||.+.+..|+..++.+ +.....++...+.+ ..+.....++.. ....+...+...++.+.+++.+++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 468999999999998855 68899999999998 666666654422 22223456777888888878999999999999
Q ss_pred hcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhh
Q 041425 277 KRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILL 325 (366)
Q Consensus 277 ~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~ 325 (366)
+.+++.++.+.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 32
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.33 E-value=4.5e-11 Score=103.90 Aligned_cols=279 Identities=15% Similarity=0.119 Sum_probs=192.2
Q ss_pred HHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-------------CHHHHHHHHHHHHH
Q 041425 22 TVNAFLRKIID---RGLN----HLVIVAYRQSISVVFLAPIVYFRERKNRPKL-------------TIHILCQLFFSALI 81 (366)
Q Consensus 22 ~~~~~~k~~~~---~~~~----~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~ 81 (366)
...+++|++-+ +|.+ |+..+..-|+.-.+.++.+.+++.|.+.+.. +.+. ...+..+++
T Consensus 17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal~ 95 (372)
T KOG3912|consen 17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPALC 95 (372)
T ss_pred HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHHH
Confidence 45566776532 3343 5666665555556667777666655432210 1111 223347788
Q ss_pred HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCC
Q 041425 82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPH 161 (366)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 161 (366)
. ..+..+.|.++.+++++..+++.....+|+.+++..+++.+++.+| |+|+.-...|++++...+-...+
T Consensus 96 D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~~~--- 165 (372)
T KOG3912|consen 96 D-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHLVT--- 165 (372)
T ss_pred H-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeeccccc---
Confidence 8 8888999999999999999999999999999999999999999999 99999999999998532111000
Q ss_pred CCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhc
Q 041425 162 LPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIER 240 (366)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 240 (366)
+...+..+...|+++.+++-+.-|+.+++.+|..++++ +|.....+...+|.+.+..++.....
T Consensus 166 ---------------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~y 230 (372)
T KOG3912|consen 166 ---------------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYY 230 (372)
T ss_pred ---------------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 00111245589999999999999999999999888765 67888889999886666655555321
Q ss_pred -CCC-cccccCc---hhH------------HHHHHHHHHHHH-HHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHc
Q 041425 241 -NLP-GWVLKGK---LET------------IGVIYCGMVGSG-LCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVL 302 (366)
Q Consensus 241 -~~~-~~~~~~~---~~~------------~~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~ 302 (366)
+.. ....++. .+| ..+...|...+. +-++.=....|..+++.-..+-.++..+--+++....
T Consensus 231 i~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~ 310 (372)
T KOG3912|consen 231 IPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG 310 (372)
T ss_pred eecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH
Confidence 100 0111110 011 112222222221 1111122346777888888899999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHhhhhc
Q 041425 303 RERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 303 ~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
.|.....|+.|.++.+.|+++|+-
T Consensus 311 ~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 311 WEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873
No 33
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.32 E-value=2.6e-11 Score=109.59 Aligned_cols=134 Identities=16% Similarity=0.300 Sum_probs=114.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLN--HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG 82 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (366)
.+.+|.+++++++++|+...+..|+..++ .+ +.....+++.++.++++++....++. +..+.+++...+..++++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 45689999999999999999999988765 66 44555578999999888887654332 233667787788888887
Q ss_pred HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425 83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV 147 (366)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 147 (366)
...++.++++++++.+++.++.+.++.|+++.++++++++|+++..+ +.|..+.+.|+.
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~~ 260 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999 999999998863
No 34
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.30 E-value=6.3e-11 Score=102.88 Aligned_cols=265 Identities=11% Similarity=0.070 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CchhhhhhccchhHHHHHH
Q 041425 38 LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYT-SATFLCAFLNTVPVITFLL 116 (366)
Q Consensus 38 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~~~~i~~~~p~~~~ll 116 (366)
..++|.++++-+.--+++.- +-....++++.+++..... .++..+.+-++++++- +...-.++.+-.++.++++
T Consensus 34 NLITFaqFlFia~eGlif~s-kf~~~k~kiplk~Y~i~V~----mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTS-KFFTVKPKIPLKDYAITVA----MFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eehHHHHHHHHHHhceeeec-cccccCCCCchhhhheehh----eeeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 44555555544443333221 1111224556666554332 2356678888898874 6677788889999999999
Q ss_pred hhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHH
Q 041425 117 ALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGC 196 (366)
Q Consensus 117 a~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa 196 (366)
+|++.|+|.+.+| ..++.+..+|+++.++.+..+..... +.=++++.+.+...+..|+.+..++-
T Consensus 109 g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~~~---------~~l~~~~~~~~~~~w~iGi~lL~~al 173 (330)
T KOG1583|consen 109 GWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRSKL---------SGLDSGSAQSDFFWWLIGIALLVFAL 173 (330)
T ss_pred HHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhhhh---------cccccCcccccchHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999865443222100 00112333344567789999999999
Q ss_pred HHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcC----------CC-----cccccCchhHHHHHHHH
Q 041425 197 TTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERN----------LP-----GWVLKGKLETIGVIYCG 260 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~-----~~~~~~~~~~~~~l~~g 260 (366)
+.-|...+.++..-+++. ++.+..+|..+.+ +|..++..++ .+ .....-|..|..++. .
T Consensus 174 ~~sa~mgiyqE~~Y~kyGKh~~EalFytH~Ls----LP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~-n 248 (330)
T KOG1583|consen 174 LLSAYMGIYQETTYQKYGKHWKEALFYTHFLS----LPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF-N 248 (330)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc----cchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH-H
Confidence 999999999888877654 5566777777655 4455543321 11 111112344554443 3
Q ss_pred HHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425 261 MVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~ 327 (366)
++.+..|.--.+....+.++..++++..++-+++.+++.+.|+.+.++.-|+|..++..|.+++.-.
T Consensus 249 ~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 249 VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555667777888999999999999999999999999999999999999999998887643
No 35
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-11 Score=107.01 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=202.6
Q ss_pred HHHHHHHhc---CC-ChHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041425 25 AFLRKIIDR---GL-NHLVIVAYRQSISVVFLAPIVYFRER----KNRPK--LTIHILCQLFFSALIGLTLTQYFLLRGL 94 (366)
Q Consensus 25 ~~~k~~~~~---~~-~~~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~al 94 (366)
...|++++. .. .|...++.+++....+...+-....+ ...++ ++.+..+.+.-..+.- .+...+-++++
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence 355666543 02 27788888888887776655432222 11222 3555556666666665 66778888999
Q ss_pred cccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccc
Q 041425 95 EYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAK 174 (366)
Q Consensus 95 ~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
+|.+++...+=..+..+|+.++.+.++|+|-+... ..+.++.++|-.+=+ +.++.
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv----dqE~~--------------- 178 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV----DQEGS--------------- 178 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecc----ccccc---------------
Confidence 99999999999999999999999999999999888 777777777766543 11111
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCccc--cc-Cc
Q 041425 175 MMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGWV--LK-GK 250 (366)
Q Consensus 175 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~-~~ 250 (366)
.+.-.+.|.++++.++++-|+..+..|+...... .....+.+....+.++..|...+.+.--..+. .. ..
T Consensus 179 ------~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~ 252 (347)
T KOG1442|consen 179 ------TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAI 252 (347)
T ss_pred ------cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHH
Confidence 0123378999999999999999999997654332 35678888999999999998888544111222 22 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 251 LETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 251 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
..|..+...|+++-.++|. -.+-+|-++|..-++-....-..-.+++..+++|.-+..-|-|-.++++|...|.+.|.+
T Consensus 253 ~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~ 331 (347)
T KOG1442|consen 253 KFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH 331 (347)
T ss_pred HHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence 3455555556654444444 455688899999999999999999999999999999999999999999999999987766
Q ss_pred hhhhhhh
Q 041425 331 EIEEFDQ 337 (366)
Q Consensus 331 ~~~~~~~ 337 (366)
+.+++.+
T Consensus 332 em~~~~~ 338 (347)
T KOG1442|consen 332 EMRKASA 338 (347)
T ss_pred HHHhhcc
Confidence 6555433
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.23 E-value=3.9e-09 Score=93.76 Aligned_cols=248 Identities=14% Similarity=0.095 Sum_probs=173.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhc-cchhH
Q 041425 35 LNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLT--IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFL-NTVPV 111 (366)
Q Consensus 35 ~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~ 111 (366)
=+|.+-.+--...+.++-+...+ ..++ ..+ .+.+...++.|++. ..++.+++.+.++..++.+.++. .++-+
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~-~~~p---~~~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLv 84 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFL-FRQP---AFSMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLV 84 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-HhCC---CcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHH
Confidence 44555555443333333333333 3332 333 37888888999998 99999999999999999999996 58888
Q ss_pred HHHHHhhhhcccccccccccccccee----hhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHH
Q 041425 112 ITFLLALPFGLEKVNVNGLAGKTKVL----GTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWII 187 (366)
Q Consensus 112 ~~~lla~~~~~e~~~~~~~~~~~~~~----g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
.+.+++.++++|--+..+ ++ ++++.++|+.+.+..+.+.. .+.+.++...
T Consensus 85 g~sl~gv~~fgEW~~~~~------~~~G~~Al~liiiGv~lts~~~~~~~--------------------~~~~~~~~~k 138 (269)
T PF06800_consen 85 GTSLIGVLFFGEWTTTTQ------KIIGFLALVLIIIGVILTSYQDKKSD--------------------KSSSKSNMKK 138 (269)
T ss_pred HHHHHHHhhcCCCCCcch------HHHHHHHHHHHHHHHHHhcccccccc--------------------ccccccchhh
Confidence 899999999999777666 44 67777888887763221111 0112355678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC 267 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 267 (366)
|+...+++.+.|..|.+..|... -++.+..+-+.....+....+..+..++ .. ....|.. +..|+ .-.++
T Consensus 139 gi~~Ll~stigy~~Y~~~~~~~~---~~~~~~~lPqaiGm~i~a~i~~~~~~~~--~~---~k~~~~n-il~G~-~w~ig 208 (269)
T PF06800_consen 139 GILALLISTIGYWIYSVIPKAFH---VSGWSAFLPQAIGMLIGAFIFNLFSKKP--FF---EKKSWKN-ILTGL-IWGIG 208 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CChhHhHHHHHHHHHHHHHHHhhccccc--cc---ccchHHh-hHHHH-HHHHH
Confidence 99999999999999999977733 2356666655554444444444432111 11 1122333 33454 46789
Q ss_pred HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchh----hHHHHHHHHHHHhh
Q 041425 268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLG----SALGSILVIVGMYI 323 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~----~~iG~~lii~g~~l 323 (366)
.+++..+.++.+.+..=.+..+.++++.+.+.+++||+=+.. .++|.+++++|.++
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999987655 44688888888764
No 37
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=3.7e-10 Score=97.83 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=192.1
Q ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhH
Q 041425 34 GLNH--LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPV 111 (366)
Q Consensus 34 ~~~~--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~ 111 (366)
|+.| +.+++.++++-..+.+...... +.+++..+||.+ ..++.+. .....+.+-++.|++-..-.++..+--+
T Consensus 70 gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY---~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKli 144 (367)
T KOG1582|consen 70 GFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTY---VILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLI 144 (367)
T ss_pred cCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHh---hhhHhhh-hhccccCcCccccccCcHHHHHHhhhhh
Confidence 5665 3455666554444433332211 112223345444 4455555 6677888889999998888888888888
Q ss_pred HHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHH
Q 041425 112 ITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIF 191 (366)
Q Consensus 112 ~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 191 (366)
-+.+.+.++-+.|.++.+ ..+..+..+|.++.++.+.+.... .+ ..|+.+
T Consensus 145 PVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~~sPN---------F~---------------~~Gv~m 194 (367)
T KOG1582|consen 145 PVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQTSPN---------FN---------------LIGVMM 194 (367)
T ss_pred hhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccccCCC---------cc---------------eeeHHH
Confidence 889999999999999999 999999999999998765443322 11 689999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cCchhHHHHHHHHHHHHHHH
Q 041425 192 LIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERNLPGWVL---KGKLETIGVIYCGMVGSGLC 267 (366)
Q Consensus 192 ~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~g~~~~~~~ 267 (366)
.-.|-++-|.-.-.+++..+.++ +...+.++....|...++......+.-+..|+. ++-..+...++.++ .+.++
T Consensus 195 IsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG 273 (367)
T KOG1582|consen 195 ISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLG 273 (367)
T ss_pred HHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhh
Confidence 88899999998889999888665 345677788888888888877776554445542 22223444444444 56788
Q ss_pred HHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 268 YVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
......-++..++..+..+...+-.+++++++++|..++|.+..-|..+++.|+++-...|
T Consensus 274 ~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 274 IVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 8888888999999999999999999999999999999999999999999999999877766
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.20 E-value=2.6e-11 Score=95.17 Aligned_cols=103 Identities=24% Similarity=0.388 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhh
Q 041425 42 AYRQSISVVFLAPIVYFRERKN--RPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALP 119 (366)
Q Consensus 42 ~~r~~~~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~ 119 (366)
.+|+..+.+++..+...+++.+ .+..+++.+.+....|+++...++.++++|+++.+ +.++++.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5789999998888877654321 12223455667777788885699999999999999 58889999999999999999
Q ss_pred hccccccccccccccceehhhhhhhhhhHhhh
Q 041425 120 FGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 120 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
++|||+++++ +.++.++++|++++..
T Consensus 81 ~~~er~~~~~------~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPRR------WLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence 9999999999 9999999999999964
No 39
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.15 E-value=2.1e-08 Score=92.58 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=181.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHH---HHHHhhh-ccCCCCCCHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAY-RQSISVVFLA---PIVYFRE-RKNRPKLTIHILCQLFFSA 79 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-r~~~~~l~l~---~~~~~~~-~~~~~~~~~~~~~~~~~~g 79 (366)
+-..|+++.+++.++||+.++..|+ .+. .+ ++.-.. -.+++.++.- .....+. -......+.+.+...++.|
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKK-WS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 4578999999999999999999997 333 43 221111 1112222211 1111000 0111234667888888899
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccc---cccccccccceehhhhhhhhhhHhhhhcCc
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKV---NVNGLAGKTKVLGTVVCVGGAVLLTLYKGK 155 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~ 155 (366)
++- ..++..++.++++...+.+..+ ..++-+...++..++++|=. +..+ +.-..+|+++.++|+++....+..
T Consensus 81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 998 9999999999999999999877 56999999999999988643 2221 112267888889999998752222
Q ss_pred ccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHH-------HHHHHhcccCCCchhHHHHHHH---
Q 041425 156 LISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWF-------LMQARIGKRFPCQYSSTTIISF--- 225 (366)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~--- 225 (366)
.++. ...++.++.+..+|+.+++++.+.++.|. ...+...+...++......+..
T Consensus 158 k~~~---------------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~ 222 (345)
T PRK13499 158 KERK---------------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIM 222 (345)
T ss_pred cccc---------------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHH
Confidence 1111 00000224667899999999999999999 4333321111122333333333
Q ss_pred HHHHHHH-HHHHH---HhcCCCcccc--cCchhHHHH---HHHHHHHHHHHHHHHHHHHhhcCcceeee---cc-chhHH
Q 041425 226 FGAIQSA-ILSLI---IERNLPGWVL--KGKLETIGV---IYCGMVGSGLCYVGMSWCVKKRGPVFTSA---FS-PLTQI 292 (366)
Q Consensus 226 ~~~i~~~-~~~~~---~~~~~~~~~~--~~~~~~~~~---l~~g~~~~~~~~~~~~~~~~~~~~~~~s~---~~-~~~pi 292 (366)
.+.+..- .+... ..++...... .+...+..- ..++.+.-.+++.++..+-.+.+...... +. .+..+
T Consensus 223 ~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vi 302 (345)
T PRK13499 223 GGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVL 302 (345)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHH
Confidence 3333222 22222 1111111111 111112222 12222346678888888888886654443 34 78889
Q ss_pred HHHHHHHHHcCCccc------hhhHHHHHHHHHHHhhhhcc
Q 041425 293 VVAIFDFSVLRERIY------LGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 293 ~a~~~~~~~~~e~~s------~~~~iG~~lii~g~~l~~~~ 327 (366)
++.+.+. ++||.=+ ...++|.+++++|..+....
T Consensus 303 istlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 303 CGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9999998 5998755 56688999999998887554
No 40
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.15 E-value=1e-09 Score=101.03 Aligned_cols=136 Identities=11% Similarity=0.052 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLT 86 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (366)
..|.++.++++++|+...++.|+..++ .++..... -..++.+++.++...... ....++..+...+..|++...++
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999988765 78877654 445666666666554322 12235566666678888888999
Q ss_pred HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhh
Q 041425 87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLY 152 (366)
Q Consensus 87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 152 (366)
+.+|++++++.+++.++++.+++|+++.++++++++|+++..+ ++|..+.+.|++.....
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 99999999999998643
No 41
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.13 E-value=7e-10 Score=93.47 Aligned_cols=276 Identities=14% Similarity=0.168 Sum_probs=193.0
Q ss_pred HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhh
Q 041425 25 AFLRKIIDR-GLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFL 102 (366)
Q Consensus 25 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 102 (366)
+-.|+.++. |++ -+.+++.+.+...+-+..+-..+. -+.+.++.+..+...++. +...+.--.+++|++.+..
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~----~~fR~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRL----VEFRLTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhH----hheehhhhhhhcCHHHHH-HHHHHhcccceeeeeeeHH
Confidence 345655543 333 344555555544444333322111 112244555556666666 6677778889999999999
Q ss_pred hhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCcccccccccccccccccc
Q 041425 103 CAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKT 182 (366)
Q Consensus 103 ~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
+++.+++.+.++.....++|.|++-.. ..+-++.++.-+...+.+.+... -..
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~~---------------------~~~ 150 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQASA---------------------FKA 150 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHHH---------------------HHh
Confidence 999999999999999999999999999 88887777766665432211110 011
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CchhHHHHHHHHHHHHHHHHHHHHhcC-CCccccc-CchhHHHHHHH
Q 041425 183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP-CQYSSTTIISFFGAIQSAILSLIIERN-LPGWVLK-GKLETIGVIYC 259 (366)
Q Consensus 183 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~ 259 (366)
+....|.+++...++.-+.+....|+-.+-.. ......+|....+.-++..+.++.|+. .....-. +......+...
T Consensus 151 ~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS 230 (309)
T COG5070 151 QILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS 230 (309)
T ss_pred cccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH
Confidence 34457889999999999999999888655211 236678899999988888888887652 1111111 22344556666
Q ss_pred HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhh
Q 041425 260 GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIE 333 (366)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~ 333 (366)
|+ +++..-.+-.|+++-.+.+..++++.++-.-..+-|.++|+|+.+...+....+-..+..+|...+.++++
T Consensus 231 gl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 231 GL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 55555666889999999999999999999999999999999999999999988888777777776554433
No 42
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.12 E-value=9.4e-10 Score=91.12 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc------CCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccc--------c-Cchh
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKR------FPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVL--------K-GKLE 252 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~-~~~~ 252 (366)
|.++++.+.++.|++.+..|+..++ ..++.....+....+.+.+.+...+.|........ . ++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5689999999999999999998776 23678899999999999999998887653211110 0 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 253 TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 253 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
+..++..|+ .....+...+..+++.+|...++...++.+...+++++++||++|..+++|+++.++|.++|++
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 444455554 5667888899999999999999999999999999999999999999999999999999998764
No 43
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=93.05 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCccc
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLI 157 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 157 (366)
..++. .+.++.|..|++..+++.++.+....-.|+.+++++++|+|+.-.+ +++.++++.|++++.+.+...
T Consensus 59 F~i~W-t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN~~- 130 (290)
T KOG4314|consen 59 FSIFW-TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADNEH- 130 (290)
T ss_pred eEEEE-ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccchh-
Confidence 34555 7888999999999999999999999999999999999999999999 999999999999997432221
Q ss_pred CCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CchhHHHHHHHHHHHHH-HHH
Q 041425 158 SNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFP--CQYSSTTIISFFGAIQS-AIL 234 (366)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~-~~~ 234 (366)
.+.+.|+.+++.+++..|+|-+.-|+....-+ +..+...-..++-.+.. .|.
T Consensus 131 -------------------------a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~ 185 (290)
T KOG4314|consen 131 -------------------------ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPA 185 (290)
T ss_pred -------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhH
Confidence 33489999999999999999999999876422 22222222222222221 111
Q ss_pred HHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHH
Q 041425 235 SLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGS 314 (366)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~ 314 (366)
.+......+.|..-....|..+...+.+ +..-..+.+.++....|...++-+.....--..++.++-+-..+.....|.
T Consensus 186 lIL~~T~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T 264 (290)
T KOG4314|consen 186 LILAFTGVEHLQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAAT 264 (290)
T ss_pred HHHHHhchHHHHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHH
Confidence 1111112223321122347776665554 333445577888888898999988888888899997665656788999999
Q ss_pred HHHHHHHhhhhccccc
Q 041425 315 ILVIVGMYILLWGKSK 330 (366)
Q Consensus 315 ~lii~g~~l~~~~~~~ 330 (366)
.+|+.|.++....+.+
T Consensus 265 ~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 265 CIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHHhHHheecccch
Confidence 9999998887765443
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.08 E-value=3e-09 Score=97.36 Aligned_cols=134 Identities=13% Similarity=0.169 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHH
Q 041425 189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCY 268 (366)
Q Consensus 189 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 268 (366)
..+.++++++||...+..|+..++.+ + ...+....+++.+.|+...... ...|...+ ..++..+..+.+.....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 46889999999999999998877622 2 3455556666666666654211 12333222 334444444555678899
Q ss_pred HHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425 269 VGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~ 327 (366)
.++++++++.+++.++++.+++|+++.+++++++||+++..+++|+++++.|+++...+
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887653
No 45
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.07 E-value=2.5e-09 Score=98.37 Aligned_cols=138 Identities=16% Similarity=0.102 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL 85 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (366)
...|.++.++++++|+...+..|+..+ -++....++++.++.+++.++............+.+.+......++++..+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999997643 234556778888888887776654322211123567788888889988789
Q ss_pred HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
++.+|++++++.+++.++++.++.|++++++++++++|+++..+ ++|..+.+.|+.+...
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999853
No 46
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.06 E-value=2.2e-09 Score=99.00 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccCchhHHHHHHHHH
Q 041425 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV--LKGKLETIGVIYCGM 261 (366)
Q Consensus 184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~ 261 (366)
+...|++++++++++|+...+..|.. .+.+ +....+++..++.+.+.++.....+ ..... ..+...+. ....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHHH-HHHHHH
Confidence 44789999999999999999999875 4444 7899999999998877776654321 11100 01112232 233555
Q ss_pred HHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 262 VGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
+...+.+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999887653
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.06 E-value=8.1e-09 Score=94.64 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=157.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHH
Q 041425 1 MNCHGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHI-LCQLFFSA 79 (366)
Q Consensus 1 m~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~~g 79 (366)
|| ++...|++++++++++-+....+-|+...+ .+. .-.| .++ ..++. ..+..+.|
T Consensus 1 ~~-~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~---------------~~~----~~~~~l~~~~W~~G 56 (300)
T PF05653_consen 1 MN-TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR---------------AGS----GGRSYLRRPLWWIG 56 (300)
T ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc---------------ccc----hhhHHHhhHHHHHH
Confidence 44 456789999999999999999888877543 111 0001 000 00111 12334455
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCC
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISN 159 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 159 (366)
.+...++..+.+.|+.+.|.+..+++....-++.++++..++|||+++++ +.|+.+++.|..++....+...+.
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~~~~~~~ 130 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFAPKEEPI 130 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeCCCCCCc
Confidence 55557788899999999999999999999999999999999999999999 999999999999876433221111
Q ss_pred CCCCCccccccccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH---HH
Q 041425 160 PHLPATNYNVTSHAKMMISS-KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAI---LS 235 (366)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~ 235 (366)
.+ ..+-.+ -.+... ........ .+...+.....+|..++ + ...........++..... +.
T Consensus 131 ~t------------~~~l~~~~~~~~f-l~y~~~~~-~~~~~L~~~~~~r~g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~ 194 (300)
T PF05653_consen 131 HT------------LDELIALLSQPGF-LVYFILVL-VLILILIFFIKPRYGRR-N-ILVYISICSLIGSFTVLSAKAIS 194 (300)
T ss_pred CC------------HHHHHHHhcCcce-ehhHHHHH-HHHHHHHHhhcchhccc-c-eEEEEEEeccccchhhhHHHHHH
Confidence 00 000000 000111 11111111 12222222222232222 1 110000011111111110 11
Q ss_pred HHHhcCC-CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHH-HHHHHHHHcCCc--cch---
Q 041425 236 LIIERNL-PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIV-VAIFDFSVLRER--IYL--- 308 (366)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~-a~~~~~~~~~e~--~s~--- 308 (366)
....... .+-....+..|..++.+ +.+........++++++.+++.+.++.+..-.. +++-|.++++|. .+.
T Consensus 195 ~~i~~~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~ 273 (300)
T PF05653_consen 195 ILIKLTFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI 273 (300)
T ss_pred HHHHHHhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence 1100000 01111222334333332 334455566678899999999998888776554 455566788875 454
Q ss_pred -hhHHHHHHHHHHHhhhhccccc
Q 041425 309 -GSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 309 -~~~iG~~lii~g~~l~~~~~~~ 330 (366)
....|+.+++.|+++....|.+
T Consensus 274 ~~~~~G~~~ii~GV~lL~~~~~~ 296 (300)
T PF05653_consen 274 IGFLCGFLIIIIGVFLLSSSKDK 296 (300)
T ss_pred HHHHHHHHHHHHhhheeeccCch
Confidence 3456888899999887665543
No 48
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.04 E-value=2.7e-09 Score=98.32 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLT 86 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (366)
..|.+++++++++|+...++.|+..++ .++....+ ..+.+++.+...... ......+.+.+..++..++.. .++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~t-~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAAM-GFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHHH-HHH
Confidence 458999999999999999999987655 77765432 223333333322222 112234667777777777655 899
Q ss_pred HHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 87 QYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 87 ~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
+.+|++++++.+++.++.+.++.|++..++++++++|+++..+ ++|.++.+.|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999999999 9999999999988753
No 49
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.01 E-value=7.9e-09 Score=97.24 Aligned_cols=136 Identities=10% Similarity=0.089 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHhhhccCC----CCCCHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNH-LVIVAYRQSISVVFLAPIVYFRERKNR----PKLTIHILCQLFFSALIG 82 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 82 (366)
.|.+++++++++|+...++.|....+ +++ ...+++...++.+.+.+......+... ...+... ...+..++..
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t 266 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence 48899999999999999999988776 655 455666666666555444443332111 1122222 2233445554
Q ss_pred HHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhh
Q 041425 83 LTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLY 152 (366)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 152 (366)
.+++.+|++++++.+++.++++.++.|++++++++++++|++++.+ ++|.++.+.|+.++...
T Consensus 267 -~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 267 -SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWG 329 (358)
T ss_pred -HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhh
Confidence 7789999999999999999999999999999999999999999999 99999999999998643
No 50
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.97 E-value=3.4e-09 Score=93.53 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=133.5
Q ss_pred CchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCC--CCCCccccccccccc
Q 041425 98 SATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNP--HLPATNYNVTSHAKM 175 (366)
Q Consensus 98 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~~~ 175 (366)
+.+....+.+..++++++..+...++|.+..+ +++..+...|++...+.+.+..... ....+..+.+ ..
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~---~~ 73 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMV---QS 73 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecC---CC
Confidence 34556677889999999999999999999888 9999999999886543221110000 0000000000 00
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhH-HHHHHHHHHHHHHHHHHHHhcC-CCcccccCchhH
Q 041425 176 MISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSS-TTIISFFGAIQSAILSLIIERN-LPGWVLKGKLET 253 (366)
Q Consensus 176 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 253 (366)
........+...|....+.+.++-+...+++++..|+.+..... .....+++.+.........+.+ ...+.. ...+
T Consensus 74 ~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 151 (222)
T TIGR00803 74 SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF--FIGY 151 (222)
T ss_pred CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc--ccCC
Confidence 00001123557788888888888888888998877654321111 1122222222111111111111 011110 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425 254 IGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 254 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~ 324 (366)
....+.-++..+++..+..+.+|+.++...+....++++++.++++++|||+++..+++|+.+++.|+++|
T Consensus 152 ~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 152 PTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred chHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 12222223456678888999999999999999999999999999999999999999999999999998754
No 51
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.96 E-value=8.6e-09 Score=93.02 Aligned_cols=137 Identities=12% Similarity=0.135 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCC---CcccccCchh-HHHHHHHHHH
Q 041425 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL---PGWVLKGKLE-TIGVIYCGMV 262 (366)
Q Consensus 187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~~l~~g~~ 262 (366)
+|..+.++++++|+...+..|.. .+. ++.+..+++..++.+.+.+......+.. ..+....... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 47899999999999999999984 344 4689999999999888776654432110 0111111122 3345555553
Q ss_pred HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
..+.+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999887643
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.89 E-value=3.7e-08 Score=78.49 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHH
Q 041425 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGL 266 (366)
Q Consensus 187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 266 (366)
.|.++.+.+.++-+...+..|+-.++.++ ...... . . ....... . ....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~~-----------~---p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAFG-----------L---ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHHh-----------c---cHHHHHHHHHHHHH
Confidence 36788899999999999999998876543 111110 0 0 0000000 0 11256778889999
Q ss_pred HHHHHHHHHhhcCcceeeeccchhHHHHHHHHHH--HcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 267 CYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFS--VLRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~--~~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
++.+|.+++++.+++.+.++....++...+.++. ++||++|+.+++|+++|++|+++..++++|
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999998888888885 899999999999999999999998765443
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.88 E-value=3.9e-08 Score=90.84 Aligned_cols=138 Identities=15% Similarity=0.182 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRG--LNHLVIVAYRQSISVVFLAPIVYFRERK-----NRPKLTIHILCQLFFSA 79 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~g 79 (366)
..|.+++++++++|+...++.|+..++. .+.....++-...+.+.+.......+.. .....+...+..++..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4699999999999999999999876541 2223334444444433333222222221 11234667888888999
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
++...+++.+|++++++.+++.++.+..+.|++..++++++++|+++..+ ++|..+.+.|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999 999999999998875
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.81 E-value=2.9e-08 Score=91.86 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccCCCC---------CCHH-HHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK---------LTIH-ILCQ 74 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---------~~~~-~~~~ 74 (366)
+..|.++++++++.|+...+..|+..++ ++||..+.++.+..+.++++|+....+...... .... .+..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 4569999999999999999999988761 389999999999999998888876433211000 0001 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
.+..+.......+.+++.+++++++..+++.....|+++.++++++++|+++..+ ++|..+.+.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHH
Confidence 2222322223344677789999999999999999999999999999999999999 999999999999885
No 55
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.76 E-value=3.9e-09 Score=90.46 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
..++.+++-++.||+.+...-+. |-+|.+.+.--.+.+.++-+.+++ . . .|..+.+.+..-++.|.+. ..++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~-~-~--~p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFL-F-V--SPELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhe-e-e--cCccchhhHHHHHHhhhHh-hhhh
Confidence 46789999999999998877655 567877776544444444444443 2 2 2455778888888888888 9999
Q ss_pred HHHHHhccccCchhhhhhc-cchhHHHHHHhhhhcccccccccccccccee----hhhhhhhhhhHhhhhcCcccCCCCC
Q 041425 88 YFLLRGLEYTSATFLCAFL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVL----GTVVCVGGAVLLTLYKGKLISNPHL 162 (366)
Q Consensus 88 ~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~----g~~l~~~Gv~li~~~~~~~~~~~~~ 162 (366)
...+.|.++.+++.+.++. .++-+-+.+++.+.++|=.+..+ .+ ++++.++|+.+-++. ++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~------~IlG~iAliliviG~~lTs~~-~~------- 139 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ------IILGFIALILIVIGIYLTSKQ-DR------- 139 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh------HHHHHHHHHHHHHhheEeeee-cc-------
Confidence 9999999999999999995 58888899999999999666555 32 333444444444321 11
Q ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 041425 163 PATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNL 242 (366)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 242 (366)
++....+.++.-+|+...+.+.+.|-.|.+..+...- +..+....+.....+....+....+
T Consensus 140 ------------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiLPqAiGMv~~ali~~~~~~--- 201 (288)
T COG4975 140 ------------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAILPQAIGMVIGALILGFFKM--- 201 (288)
T ss_pred ------------ccccccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhhHHHHHHHHHHHHHhhccc---
Confidence 1111222456778999999999999999988877552 2233444443333333333333211
Q ss_pred CcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhH----HHHHHHH
Q 041425 243 PGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSA----LGSILVI 318 (366)
Q Consensus 243 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~----iG~~lii 318 (366)
... .....+.-+.-|+ .-++++..+..+-++.+....=.++.+..+++.+-+.++++|+=|..++ +|.++++
T Consensus 202 -~~~--~~K~t~~nii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiiliv 277 (288)
T COG4975 202 -EKR--FNKYTWLNIIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIV 277 (288)
T ss_pred -ccc--hHHHHHHHHhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHH
Confidence 111 1122333344455 4678999999999999998888888999999999999999999887665 6888888
Q ss_pred HHHhhhhc
Q 041425 319 VGMYILLW 326 (366)
Q Consensus 319 ~g~~l~~~ 326 (366)
+|..+...
T Consensus 278 vgai~lg~ 285 (288)
T COG4975 278 VGAILLGI 285 (288)
T ss_pred HHhhhhhe
Confidence 88776544
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.74 E-value=4.5e-08 Score=76.71 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHH
Q 041425 222 IISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSV 301 (366)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~ 301 (366)
++..++.+..........+..+.+.......+...+..|.+....++.++.++.++.++ .++.+..++|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666555553221111111112445556666776666899999999999994 88899999999999999999
Q ss_pred cCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 302 LRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 302 ~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
++|+++..+++|.+++++|+++..+.+..
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998876543
No 57
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.74 E-value=2.2e-07 Score=76.79 Aligned_cols=133 Identities=21% Similarity=0.326 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccCCCC----C-------CHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDR------GLNHLVIVAYRQSISVVFLAPIVYFRERKNRPK----L-------TIHI 71 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~----~-------~~~~ 71 (366)
|.++++.+.++.+...++.|+..++ +.++.++..+....+.+++++.....++....+ . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5788999999999999999988765 689999999999999999999887665433100 0 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425 72 LCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL 148 (366)
Q Consensus 72 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 148 (366)
+..++..|++. ...+.+.+..++++++...++......+.+.++++++++|+++..+ +.|+.+++.|+++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence 56666777777 8999999999999999999999999999999999999999999999 9999999999875
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.67 E-value=2.3e-07 Score=85.18 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQS----ISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIG 82 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (366)
++|+++.+++++.++......|.. +.||...++.... .+.+++.++ + +.++ ...+.....++.|++.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I--LAKP-LKKYAILLNILPGLMW 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h--cccc-hHHHHHHHHHHHHHHH
Confidence 789999999999999999999965 3788887655554 333333333 1 1122 2234444556688886
Q ss_pred HHHHHHHHHHhcc-ccCchhhhhhccchhHHHHHHhhhhccccccccccccccce----ehhhhhhhhhhHhh
Q 041425 83 LTLTQYFLLRGLE-YTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKV----LGTVVCVGGAVLLT 150 (366)
Q Consensus 83 ~~~~~~~~~~al~-~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~ 150 (366)
..++.+|+.+.+ +.+++.+.++.+..|+...+.+.+++||+.++++ + +|.++.+.|+.++.
T Consensus 222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG 287 (290)
T ss_pred -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence 999999999999 9999999999999999999999999999999999 9 99999999998875
No 59
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.66 E-value=4.9e-07 Score=85.28 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHhhhccCCC--------CCCHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDR------GLNHLVIVAYRQSISVVFLAPIVYFRERKNRP--------KLTIHI 71 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~--------~~~~~~ 71 (366)
+..|.+++++++++|+...++.|...++ ..++.....+....+.++++|+....+..... ..+...
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 4579999999999999999999988764 25677677777788888888887643221100 000001
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhh
Q 041425 72 LCQLFFSALIGLTLTQYFLL----RGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAV 147 (366)
Q Consensus 72 ~~~~~~~g~~~~~~~~~~~~----~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 147 (366)
+...+...+.+ .+.+.+++ .+++++++...++...+.|+++.++++++++|+++..+ ++|..+.+.|+.
T Consensus 272 ~~~~l~~i~~s-~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~ 344 (350)
T PTZ00343 272 KGIIIFKIFFS-GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGAL 344 (350)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHH
Confidence 11111122222 44444444 69999999999999999999999999999999999999 999999999998
Q ss_pred Hhh
Q 041425 148 LLT 150 (366)
Q Consensus 148 li~ 150 (366)
+-.
T Consensus 345 lYs 347 (350)
T PTZ00343 345 LYS 347 (350)
T ss_pred HHh
Confidence 764
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.61 E-value=7.5e-07 Score=81.39 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425 7 WMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVA-YRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL 85 (366)
Q Consensus 7 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (366)
..|.++.+.+++.|+...+..|... + .++..... +.+.....+..+... .... ...+.+.+......|++....
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999776 4 66766666 444322222223222 1111 235678889999999998668
Q ss_pred HHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 86 TQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
++.++++++++.+++..+.+..+.|++..++++++++|+++..+ +.|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 999999999999885
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.55 E-value=6.6e-07 Score=69.55 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 260 GMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
++++..+++.++.+++++.+.+.+-.+.++.++++.++++++|||++|+.+++|.+++++|+++...
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4456778999999999999999999999999999999999999999999999999999999987643
No 62
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.52 E-value=1.1e-06 Score=68.43 Aligned_cols=69 Identities=25% Similarity=0.188 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 76 FFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 76 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
...+++++.+++.++..++++.|.+.+..+.++.++++.+++++++|||+++.+ ++|+.+.+.|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 344446668899999999999999999999889999999999999999999999 999999999999884
No 63
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.43 E-value=2.3e-06 Score=75.92 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc-ccCchhHHHHHHHHHHHH
Q 041425 186 IIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV-LKGKLETIGVIYCGMVGS 264 (366)
Q Consensus 186 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~~ 264 (366)
..|+++++.|-+.|+..-.+.|.+... + +..+..++.+++............+....+. ...+..+......+.. -
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll~~~-~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLLEPL-P-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-I 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccC-C-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-H
Confidence 589999999999999999999887654 4 5789999999999888887777544222222 2345667766666664 4
Q ss_pred HHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 265 GLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
......+.++.++.....++.-++++|.+.+++|.++++|+++..|++..++..+|+....+..
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 5788999999999999999999999999999999999999999999999999999988766543
No 64
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.40 E-value=3.1e-06 Score=67.50 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
+++++++++.++-+..-++.|...++ .+....... . ...+. .. . .....+..|+..+.+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~----~~---~---------~p~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL----AF---G---------LALRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH----HH---h---------ccHHHHHHHHHHHHHHH
Confidence 47889999999999999999988876 443332211 1 00000 00 0 00124667788789999
Q ss_pred HHHHHhccccCchhhhhhccchhHHHHHHhhh--hccccccccccccccceehhhhhhhhhhHhh
Q 041425 88 YFLLRGLEYTSATFLCAFLNTVPVITFLLALP--FGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 88 ~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
.+|.+++++.|++.+..+.+..+.++.+.++. +++|++++.+ ++|+.+.++|++++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 99999999999999999999998888888885 8999999999 999999999999985
No 65
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.1e-06 Score=78.80 Aligned_cols=277 Identities=14% Similarity=0.158 Sum_probs=162.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHH
Q 041425 4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGL 83 (366)
Q Consensus 4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (366)
.++.+|.++++.+.++-|....+-|+...+ ... ...| ...... .-.+ -+....|.+..
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r---------------a~~gg~-~yl~--~~~Ww~G~ltm 74 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR---------------AGEGGY-GYLK--EPLWWAGMLTM 74 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc---------------ccCCCc-chhh--hHHHHHHHHHH
Confidence 455678888888888888888888877654 111 1111 111111 1112 24556788888
Q ss_pred HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCC
Q 041425 84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLP 163 (366)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 163 (366)
.++...-|.|+.+.|++..+++-.+.-+..++++..++|||++... .+|..++++|-.+++..........+
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~haP~e~~i~t-- 146 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHAPKEQEIES-- 146 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEecCccccccc--
Confidence 9999999999999999999999999999999999999999999999 99999999999998742222111100
Q ss_pred Ccccccccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH--------
Q 041425 164 ATNYNVTSHAKMMISSK-KTERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAIL-------- 234 (366)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------- 234 (366)
. .+..+. .+.... .....++ ....+-....+ +++. ......|....+.+-++-.
T Consensus 147 --------~--~el~~~~~~~~Fl-iy~~~ii--l~~~il~~~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~ 209 (335)
T KOG2922|consen 147 --------V--EEVWELATEPGFL-VYVIIII--LIVLILIFFYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGI 209 (335)
T ss_pred --------H--HHHHHHhcCccHH-HHHHHHH--HHHHHHheeec---cccc-ccceeehhhHhhhhcceeeeeHHHHHH
Confidence 0 000000 011111 1111111 11111111222 1211 1223334444443321111
Q ss_pred --HHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchh-HHHHHHHHHHHcCCc--cch-
Q 041425 235 --SLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLT-QIVVAIFDFSVLRER--IYL- 308 (366)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-pi~a~~~~~~~~~e~--~s~- 308 (366)
-....+. ++. ..+..|..++.... +...-.--.+++++..+++.++++.|+. ..++++-+.++|+|. .+.
T Consensus 210 aiklt~~g~-~ql--~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~ 285 (335)
T KOG2922|consen 210 AIKLTFSGN-NQL--FYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDAL 285 (335)
T ss_pred HHHHHhcCC-ccc--ccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 1111111 121 22344544444433 3334444568999999999988888764 456666788888875 333
Q ss_pred ---hhHHHHHHHHHHHhhhhccccch
Q 041425 309 ---GSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 309 ---~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
....|+..++.|+++....|.++
T Consensus 286 ~i~~~~~Gf~ti~~G~flL~~~kd~~ 311 (335)
T KOG2922|consen 286 DIAGELCGFVTIFLGIFLLHRTKDME 311 (335)
T ss_pred HHHHHHHhHHHhhheeeEeeeecccc
Confidence 45678999999999886554444
No 66
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.25 E-value=1.4e-05 Score=73.98 Aligned_cols=140 Identities=17% Similarity=0.115 Sum_probs=113.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CHHHHHHHHHHHHH
Q 041425 4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKL--TIHILCQLFFSALI 81 (366)
Q Consensus 4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~ 81 (366)
.++.+|-++++++++++|...++-++..++ .++.++..+-.+.+.++..+.....+++...+. +.+....++..+++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 356799999999999999999999999887 899998888888888888777766666544333 44444444444444
Q ss_pred HHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 82 GLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
. +..+.+.-..+++.++....+=.-+..+++.+++.+++++++++.. ++|.++.++|.++...
T Consensus 243 l-f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly------~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 L-FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY------ILAFALIIIGFVVYNL 305 (334)
T ss_pred H-HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH------HHHHHHHHHHhheEEc
Confidence 4 6677777888999999888777788999999999999999999999 9999999999998754
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.21 E-value=1.2e-05 Score=69.72 Aligned_cols=137 Identities=14% Similarity=0.049 Sum_probs=114.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT 84 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (366)
-...|..+++.+..+|+...+..|+.-+. .+.-.-+..-+.++.++.+|+-.-..... -.++.-....+..++++..
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcc
Confidence 35689999999999999999999988654 45555566778899999999875332222 1255677777888999989
Q ss_pred HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
+.+.+-..+++..|...-+++.++.|.+.++.++++++|.++..| |.++...+.+..=.+
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~ 281 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGST 281 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999 999998887766443
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.08 E-value=1.1e-05 Score=63.24 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 260 GMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
.+++.++++.++..++++.+.+.+=.+ ..+..+.+.++++++|||++|+.+++|+.+|++|++......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344566899999999999998775444 568899999999999999999999999999999999886544
No 69
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.91 E-value=0.0036 Score=57.36 Aligned_cols=301 Identities=12% Similarity=0.087 Sum_probs=177.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hhhccC----CCCCCHHHHHHHHHH
Q 041425 4 HGQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVY-FRERKN----RPKLTIHILCQLFFS 78 (366)
Q Consensus 4 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 78 (366)
++-..|+++..++.+.-|..++-.|+.-+ .+-...=....+++.++ .|+.. +..-++ ....+...+....+.
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 34568999999999999999999996633 43333223334444443 34332 111111 122345677777888
Q ss_pred HHHHHHHHHHHHHHhccccCchhh-hhhccchhHHHHHHhhhhcccccc-ccccccccceehhhhhhhhhhHhhhhcCcc
Q 041425 79 ALIGLTLTQYFLLRGLEYTSATFL-CAFLNTVPVITFLLALPFGLEKVN-VNGLAGKTKVLGTVVCVGGAVLLTLYKGKL 156 (366)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~p~~~~lla~~~~~e~~~-~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~ 156 (366)
|++- ..+...|=.+++|+..+.. ++...+..++..++-.++.++--. ..+.-+.-.++|++++++|+.++...+...
T Consensus 80 G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 80 GVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred HHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 9998 8899999999999999877 444667777777776665432100 001112233889999999999997433222
Q ss_pred cCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCc----hhHHHHHHH
Q 041425 157 ISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTTWSSWFLMQARIGKR-------FPCQ----YSSTTIISF 225 (366)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~-------~~~~----~~~~~~~~~ 225 (366)
+.. ...+..+.+..+|+++++++.++-|.+++-...-..- ..++ .......+.
T Consensus 159 e~~----------------~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~ 222 (344)
T PF06379_consen 159 EKE----------------LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLW 222 (344)
T ss_pred hhh----------------hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhh
Confidence 211 1112234577899999999999988887766543210 0011 112234455
Q ss_pred HHHHHHHHHHHHHhc---CCC---cccccCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhcCc----ceeeeccchhHH
Q 041425 226 FGAIQSAILSLIIER---NLP---GWVLKGK---LETIGVIYCGMVGSGLCYVGMSWCVKKRGP----VFTSAFSPLTQI 292 (366)
Q Consensus 226 ~~~i~~~~~~~~~~~---~~~---~~~~~~~---~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~pi 292 (366)
.+.+.-+...++... +.. +.....+ .++...+..|. .-...+++|.++-.+.+. +--.+.+.+..+
T Consensus 223 GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl 301 (344)
T PF06379_consen 223 GGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMALIVL 301 (344)
T ss_pred hHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 566666666655321 221 1111111 12222222333 345677777777777764 334566777888
Q ss_pred HHHHHHHHHcCC------ccchhhHHHHHHHHHHHhhhhc
Q 041425 293 VVAIFDFSVLRE------RIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 293 ~a~~~~~~~~~e------~~s~~~~iG~~lii~g~~l~~~ 326 (366)
++-+++. .++| ++-...++|+++++.++.++-.
T Consensus 302 ~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 302 FSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 8888886 5555 3334557898888888776543
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.83 E-value=5.8e-05 Score=58.31 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhcCcceee-eccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 261 MVGSGLCYVGMSWCVKKRGPVFTS-AFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
+++.++++.++..++++.|.+.+= +...+..+.+.++++++|+|++++.+++|++++++|++..+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345668889999999999976653 44667888999999999999999999999999999999986543
No 71
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.83 E-value=0.00027 Score=65.43 Aligned_cols=130 Identities=18% Similarity=0.081 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcccCC-C--chhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 041425 199 WSSWFLMQARIGKRFP-C--QYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSWCV 275 (366)
Q Consensus 199 ~a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~ 275 (366)
+..+.+.++++.++.. . +..+++.+.....+...+.......+ ..+...+......++ ...++..+.+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSRKIPLKKYAILSF-LFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCCcChHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3446677888776432 3 56777888888777776666553311 111223444455555 5678888999999
Q ss_pred hhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhhh
Q 041425 276 KKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEE 334 (366)
Q Consensus 276 ~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 334 (366)
++++...-.+.....|+.+++++.++++++.+..++.+.+++.+|+.+....+.++.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 99999999999999999999999999999999999999999999999988765444333
No 72
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.79 E-value=7e-05 Score=68.84 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=89.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHH
Q 041425 183 ERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMV 262 (366)
Q Consensus 183 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 262 (366)
.+...|..+++.++++.+....++|+...+.+. ..... .....+......|+ .|.+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~-------------------~~~~~~~l~~~~W~----~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRA-------------------GSGGRSYLRRPLWW----IGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc-------------------cchhhHHHhhHHHH----HHHH
Confidence 345789999999999999999999997765332 00000 00000000011222 2444
Q ss_pred HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
...++..+...++...|++.++++..+..++..+++..++||+++...++|+.+++.|..+...
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 4556777888999999999999999999999999999999999999999999999999887654
No 73
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.79 E-value=4.6e-06 Score=72.69 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHH
Q 041425 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVG 263 (366)
Q Consensus 184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 263 (366)
....|..+.-++ .++...++..++.... +|.........+-.+...|..+..... .+.......| ++.=|+ .
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~--LiLRg~-m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKW--LILRGF-M 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEE--EEeehh-h
Confidence 445788888888 8888888888887765 345566666555444444443332211 1121111222 233354 3
Q ss_pred HHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 264 SGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
+..+..+++|++++.+.+.++++....|+++.+++|++++|+.|.....|..+.+.|++++.+..
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 45788889999999999999999999999999999999999999999999999999999988754
No 74
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.79 E-value=0.00027 Score=63.18 Aligned_cols=117 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT 84 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (366)
+..|+++.++++++.+....++.|.. ++++....+-+. ++.++-..++....++ +...+...+-++.|++. .
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~~~---~~~~k~~~~nil~G~~w-~ 206 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFSKK---PFFEKKSWKNILTGLIW-G 206 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHH-HHHHHHHHHHhhcccc---cccccchHHhhHHHHHH-H
Confidence 45789999999999999999999864 488877666544 3333333322221121 12223444557778887 8
Q ss_pred HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccc
Q 041425 85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNG 129 (366)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~ 129 (366)
.++.+++.+.+....+.+-.+.++..++..+.+.+++||+-++++
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke 251 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE 251 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence 999999999999999999999999999999999999999988887
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.77 E-value=0.00047 Score=55.73 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHH
Q 041425 189 SIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCY 268 (366)
Q Consensus 189 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 268 (366)
.++++.++..-++....+.++.++..++...++..+..+.+.+..+..+.++. .+.......|+..+ |.+.+++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l--GG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL--GGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc--cHHHHHHHH
Confidence 57889999999999999999998877688899999999999998888886653 22211223444444 444566777
Q ss_pred HHHHHHHhhcCcceeeecc-chhHHHHHHHHHH-H---cCCccchhhHHHHHHHHHHHhh
Q 041425 269 VGMSWCVKKRGPVFTSAFS-PLTQIVVAIFDFS-V---LRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 269 ~~~~~~~~~~~~~~~s~~~-~~~pi~a~~~~~~-~---~~e~~s~~~~iG~~lii~g~~l 323 (366)
.+..+.+++.+++....+. .-+.+.+.+++.+ + -++++++.+++|.+++++|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7788899999987765554 4456667777875 2 3467899999999999999864
No 76
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.64 E-value=0.00019 Score=65.85 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=113.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHhhhccCC-----CCCCHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIID---RGLNHLVIVAYRQSISVVFLA-PIVYFRERKNR-----PKLTIHILCQL 75 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~-~~~~~~~~~~~-----~~~~~~~~~~~ 75 (366)
=++.|.+.++++.+..+...++.|..+. +.++++.+.....-++..+++ |+....++... ...+.. ....
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence 3679999999999999999999998883 358999999988888888888 88766554332 122333 3334
Q ss_pred HHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 76 FFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 76 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
....++. .+.+...|..+.+++|-..++....--.++...+++++++++++.+ .+|..+++.|+.+=.
T Consensus 239 ~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHH
Confidence 4444777 7778889999999999999999999999999999999999999999 999999999998864
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.59 E-value=0.0009 Score=54.12 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLN-HLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQ 87 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (366)
.+++++++..+-+....+.....++ .. |..-++..+..+.+.+..+....+++..+..+ +.-.+...-|+++ ...-
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG-~~~V 78 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLG-VFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHH-HHHH
Confidence 3567778888888888888877776 55 99999999999999888887766654333222 2223444578888 8999
Q ss_pred HHHHHhccccCchhhhhhc-cchhHHHHHHhhh----hccccccccccccccceehhhhhhhhhhH
Q 041425 88 YFLLRGLEYTSATFLCAFL-NTVPVITFLLALP----FGLEKVNVNGLAGKTKVLGTVVCVGGAVL 148 (366)
Q Consensus 88 ~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 148 (366)
.+..+.....+++....+. .-+-+...++..+ .-|+++++.+ ++|+.+.++|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence 9999999999998886664 4566666777775 4588899999 9999999999864
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00026 Score=53.64 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcc
Q 041425 263 GSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~ 327 (366)
+..+++.+...++|+.|... .++..-...+.+.+.++++|+|+++..+++|..++++|++..+..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 45588999999999998654 577888889999999999999999999999999999999987654
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.51 E-value=0.0015 Score=50.19 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhh
Q 041425 263 GSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILL 325 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~ 325 (366)
...+++.+...++|+.|... .++...+..+.+.+.++++|||++++.+++|+++++.|++...
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999755 5667778889999999999999999999999999999998764
No 80
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.0016 Score=52.70 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHH
Q 041425 186 IIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSG 265 (366)
Q Consensus 186 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 265 (366)
....+.++.++++-.+....+.++.+...+|....+..+..+.+++..+.++.++ ...+....+..|+..+. |. ..+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~G-G~-lGa 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWIG-GL-LGA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHHc-cc-hhh
Confidence 5678899999999999999999999987788889999999999999988888443 22333223334554332 33 233
Q ss_pred HHHHHHHHHHhhcCc-ceeeeccchhHHHHHHHHHHHcC----CccchhhHHHHHHHHHHHhhhhcc
Q 041425 266 LCYVGMSWCVKKRGP-VFTSAFSPLTQIVVAIFDFSVLR----ERIYLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~s~~~~~~pi~a~~~~~~~~~----e~~s~~~~iG~~lii~g~~l~~~~ 327 (366)
+--........+.++ ........-+.+.+.+++.+=+. .+++..+++|++++++|+++..+.
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 333334445556554 34455556667777777765443 468999999999999996555443
No 81
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.50 E-value=0.00077 Score=51.85 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+..+..++++...++++.|.+.+-.+ ...-.+.+.+++++++||++++.+ ++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence 34448899999999999999988555 668899999999999999999999 99999999999886
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.45 E-value=0.00045 Score=52.83 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 262 VGSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
++..+++.+...++|+.|... .++...+..+.+.++++++|||++|+.+++|+.++++|++..+.
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 345689999999999999754 56677788999999999999999999999999999999988754
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.39 E-value=0.00078 Score=61.93 Aligned_cols=140 Identities=11% Similarity=0.198 Sum_probs=112.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCCHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDR---GLNHLVIVAYRQSISVVFLAPIVYFRE---RKNRPKLTIHILCQLFFS 78 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~---~~~~~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (366)
+...|-++++++++++|...++.|+-.++ .+|--.+..+-.++..++++|..++-. .++..-.+..+...++..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 45789999999999999999999987653 255555555556667777776554432 222222344566677888
Q ss_pred HHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 79 ALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
++++.+++.++|..|.-.+++-.+++-..++....++...++.+.++++.. ++|....++|-+++.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVN 389 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhhee
Confidence 899999999999999999999999999999988999999999999999999 999999999988885
No 84
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.38 E-value=0.00031 Score=55.03 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
..+..+..+++++..++++.|.+.+-.+ .....+.+.+++.++++|++++.+ ++|+.+.++|++.+-
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhh
Confidence 3455558899999999999999999666 468999999999999999999999 999999999998884
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.37 E-value=0.00031 Score=54.12 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041425 14 VAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQYFLLRG 93 (366)
Q Consensus 14 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 93 (366)
++.+++||.+.++.|+..+. .++..-.. |..-.... ++ .+++... .=+++ -.+...|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--------~n~~y~i----pf~lN-q~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--------LNPKYII----PFLLN-QSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--------HhHHHHH----HHHHH-HHHHHHHHHH
Confidence 35678999999999988764 54433321 32111111 10 0222222 22334 6667899999
Q ss_pred ccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 94 LEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 94 l~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+...+.+.+.++ +++.-++|++.++++.+|..++.. ++|+.+.+.|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence 999999999888 589999999999999888889888 99999999998764
No 86
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.35 E-value=0.00044 Score=53.42 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
..+..+..++.++..++++.|.+.+-.+ .....+.+.+++++++||++++.+ ++|+.+.++|++.+-
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 3455568889999999999999998666 568899999999999999999999 999999999999984
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00051 Score=52.04 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhccccCchhh-hhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 79 ALIGLTLTQYFLLRGLEYTSATFL-CAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
.+.++..++.+.-.++++.|.+.+ ++-...-.+.+.+.++++++|+++..+ ++++.+.+.|++.+
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~L 101 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHh
Confidence 344458889999999999999988 445679999999999999999999999 99999999999987
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.23 E-value=0.00078 Score=51.52 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+.++..++++...++++.|.+.+-.+ ...-.+.+.+++++++||++++.+ ++|+.+.+.|++.+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhh
Confidence 44458899999999999999988555 569999999999999999999999 99999999999987
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.00057 Score=59.25 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC 267 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 267 (366)
..+++++=++.|+..-....+...+ |.+.+....+.+.+......++.. + ..+ ...+..-+..|+ .-.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~---p~qQ~lGtT~GALifaiiv~~~~~-p--~~T---~~~~iv~~isG~-~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK---PYQQTLGTTLGALIFAIIVFLFVS-P--ELT---LTIFIVGFISGA-FWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC---hhHhhhhccHHHHHHHHHHheeec-C--ccc---hhhHHHHHHhhh-Hhhhh
Confidence 4578889999999877777665433 456666666555555555555422 1 111 122333333444 46689
Q ss_pred HHHHHHHHhhcCcceeeeccc-hhHHHHHHHHHHHcCCccchhhHH----HHHHHHHHHhhhhcccc
Q 041425 268 YVGMSWCVKKRGPVFTSAFSP-LTQIVVAIFDFSVLRERIYLGSAL----GSILVIVGMYILLWGKS 329 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~s~~~~-~~pi~a~~~~~~~~~e~~s~~~~i----G~~lii~g~~l~~~~~~ 329 (366)
+...+++++..+.+++.++.. .+.+-+.+++.+.|||..+..+.+ ..+++++|+++..++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999999999999998876 566777889999999999887763 56778889888777654
No 90
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.96 E-value=0.025 Score=52.70 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=91.0
Q ss_pred CchHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHH-HHHHhh--hccCC-----CC
Q 041425 5 GQWMPVLMMVAVNFGFATVN-------AFLRKIIDRGLNHLVIVAYRQS---ISVVFLA-PIVYFR--ERKNR-----PK 66 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~-------~~~k~~~~~~~~~~~~~~~r~~---~~~l~l~-~~~~~~--~~~~~-----~~ 66 (366)
+..||++.++++.++.+... +..+...+.|.++.....-.+. ++..+.- .+..+. +.+.. ++
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 45799999999999999988 6666555557777665555554 3333322 222221 11211 11
Q ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhh---hc-cchhHHHHHHhhhhccccccccccccccceeh
Q 041425 67 LT----IHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCA---FL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVLG 138 (366)
Q Consensus 67 ~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~---i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g 138 (366)
.+ ++.....++.|++. ..++.+|..+-...+.+.+.. +. ++.-++..+-+. ++||+-+..+..-+-.++|
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 12 33444447777777 888889999888876655544 54 555566666666 6999887323223334778
Q ss_pred hhhhhhhhhHhhh
Q 041425 139 TVVCVGGAVLLTL 151 (366)
Q Consensus 139 ~~l~~~Gv~li~~ 151 (366)
+++.++|..++.+
T Consensus 329 ~vliI~g~~lig~ 341 (345)
T PRK13499 329 CVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888864
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.96 E-value=0.0013 Score=49.39 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhcCccee-eeccchhHHHHHHHHHHHcCCccchhhHHHHHHH
Q 041425 263 GSGLCYVGMSWCVKKRGPVFT-SAFSPLTQIVVAIFDFSVLRERIYLGSALGSILV 317 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~li 317 (366)
+..+++.++..++|+.+.+.+ .+...+..+.+.+.+.++|||++|+.+++|+.+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 566888999999999998887 4556689999999999999999999999999876
No 92
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.87 E-value=0.0019 Score=57.64 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425 253 TIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 253 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
...+..=++ ...+...+.+.++++.+|+...++..++.++++++++++++.+++..||++..+.++|+.+........
T Consensus 17 ~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 17 TLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 333333344 366788889999999999999999999999999999999999999999999999999999877654443
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.61 E-value=0.011 Score=52.61 Aligned_cols=188 Identities=9% Similarity=0.004 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY 88 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (366)
|+++.+++.+++|+.++-.|.. +. -|++.+-++......+.-+.+..+.. .++ ...+.++-|.+. +.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~----f~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPP----FYPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCc----ceeHHHhhhhhh-hcCce
Confidence 5788999999999999999944 33 57777776665444444444443322 222 234455666676 89999
Q ss_pred HHHHhccccCchhhhhhccchhHHH-HHHhhh-hcccccc-----ccccccccceehhhhhhhhhhHhhhhcCcccCCC-
Q 041425 89 FLLRGLEYTSATFLCAFLNTVPVIT-FLLALP-FGLEKVN-----VNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNP- 160 (366)
Q Consensus 89 ~~~~al~~~~~~~~~~i~~~~p~~~-~lla~~-~~~e~~~-----~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~- 160 (366)
+-.-.++....+....+-.+.-+.+ -..+++ +++++.. ... .+|++++++|..+..+-+.+.....
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln------~~G~~l~~~~~~~f~fik~~~~~~~~ 144 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLN------YIGVALVLVSGIIFSFIKSEEKEPKK 144 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHH------HHHHHHHHHHHHheeeecCCCCCccc
Confidence 9999999999999999877644444 444443 3433222 233 5677788888777654333321100
Q ss_pred CC----CCcccccccccc----ccccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 041425 161 HL----PATNYNVTSHAK----MMISS----KKTERWIIGSIFLIAGCTTWSSWFLMQARIGKR 212 (366)
Q Consensus 161 ~~----~~~~~~~~~~~~----~~~~~----~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~ 212 (366)
.. ...+...+..++ .+++. ....+...|..++++++++|+...+=..++.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 145 SSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred cccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 00 000101111111 01111 112357899999999999999988777777655
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.36 E-value=0.0045 Score=46.38 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhh
Q 041425 79 ALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVV 141 (366)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l 141 (366)
.+..+..++.++..++++.|.+.+-.+ .....+.+.+++.+++||+++..+ +.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 344558899999999999999999555 569999999999999999999999 888765
No 95
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.32 E-value=0.012 Score=45.40 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 041425 194 AGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCYVGMSW 273 (366)
Q Consensus 194 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~ 273 (366)
+-++.|+..+-+.||..+..++.... . +....... ++ ..|-..+ .......+-..|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll-------------~n~~y~i--pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LL-------------LNPKYII--PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HH-------------HhHHHHH--HHHHHHHHHHHHHH
Confidence 44688999999999988875532222 1 21111111 11 1111222 33335567777899
Q ss_pred HHhhcCcceeeecc-chhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhh
Q 041425 274 CVKKRGPVFTSAFS-PLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYI 323 (366)
Q Consensus 274 ~~~~~~~~~~s~~~-~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l 323 (366)
.+.+.+.+.+.++. .+.-+++++.++++.+|..+...++|++++++|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 99999999999985 999999999999888888899999999999999865
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.059 Score=48.53 Aligned_cols=138 Identities=13% Similarity=0.169 Sum_probs=110.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIID-RGLNHLVIVAYRQSISVVFLAPIVYFRERKNRP-----KLTIHILCQLFFS 78 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 78 (366)
+...|++++....++-|.....=+...+ .++++..+.+.-.+...+.-....+.. ...++ +..++.+..+++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHH
Confidence 4568999999999988888877666654 368899998888888887766664322 22221 1245667778888
Q ss_pred HHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 79 ALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
..++ ++++.+.|+-++.-++-.-+.+..+-=+++.+++.+.++.+++..| |.|+.+.+.|+.+=.
T Consensus 248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence 8998 9999999999999888888888889999999999999999999999 999999999988754
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.12 Score=42.05 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTL 85 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (366)
....+++.+.+..+-.....+.-.+.+..=+|..-.+..+..+.+.+..+.+.+.++......++...+...-|+++ +.
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~ 81 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI 81 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence 35677788888888888888877777662359998999999998888888776444332221223334445556666 66
Q ss_pred HHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhc----cccccccccccccceehhhhhhhhhhHh
Q 041425 86 TQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFG----LEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~----~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
.-...........++....+ ..-+-+...++..+=. +.+++..+ ++|+++.+.|+.++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r------~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPR------ILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHH------HHHHHHHHHHHHHh
Confidence 65666666666666655443 5556666666665322 57777788 99999999995554
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.64 E-value=0.015 Score=51.75 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHH
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLC 267 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 267 (366)
|.+.+++|+++++-..+=.|+.... |.+....++.....+......++.+ .+.+ .....+|...-+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~--~p~f--------~p~amlgG~lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILG--FPPF--------YPWAMLGGALWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcC--CCcc--------eeHHHhhhhhhhcC
Confidence 4567889999999988888876544 4443433333333333333333321 1111 11111222234456
Q ss_pred HHHHHHHHhhcCccee-eeccchhHHHHHHHHHH-HcCCc-----cchhhHHHHHHHHHHHhhhhccccch
Q 041425 268 YVGMSWCVKKRGPVFT-SAFSPLTQIVVAIFDFS-VLRER-----IYLGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 268 ~~~~~~~~~~~~~~~~-s~~~~~~pi~a~~~~~~-~~~e~-----~s~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
..+-.-.+|+++-... .+....+.+.+...+-+ +||++ -.+..++|++++++|..++..-|.++
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 6666666777665443 33344466666666543 56543 35678899999999998887655444
No 99
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.61 E-value=0.027 Score=49.47 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425 78 SALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL 148 (366)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 148 (366)
..+.+ .....+....++|.++...+....+.++++.+++.++++|+++..+ +.|+.+.+.|+.+
T Consensus 158 ~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL 221 (222)
T ss_pred HHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence 33444 6777889999999999999999999999999999999999999999 9999999888653
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0042 Score=56.17 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=93.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHH
Q 041425 182 TERWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGM 261 (366)
Q Consensus 182 ~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 261 (366)
..++..|..+++.+.+..+...++.|+..++... . ..-.++ ...+... . ..-+.|+
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~-----------------~~ra~~--gg~~yl~-~---~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-S-----------------GLRAGE--GGYGYLK-E---PLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh-h-----------------cccccC--CCcchhh-h---HHHHHHH
Confidence 4556789999999999999999999887665221 0 000001 1111111 1 1223477
Q ss_pred HHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccch
Q 041425 262 VGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
+...++-.+.+.+....+++.+++++.++.++.++++..+++|++++...+|+++.++|.......-.++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 7777888888899999999999999999999999999999999999999999999999987766544333
No 101
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.16 E-value=0.78 Score=42.47 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC---CchhHHHHHHHHHHHHHHHHHHHHhcC-----CCc---ccccCchhHHH
Q 041425 187 IGSIFLIAGCTTWSSWFLMQARIGKRFP---CQYSSTTIISFFGAIQSAILSLIIERN-----LPG---WVLKGKLETIG 255 (366)
Q Consensus 187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~---~~~~~~~~~~~ 255 (366)
.=.+..+...+.++......|+..++.. .+.+..+..-..-.+......+..++. ... +....+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3445556666777777777777665432 133444444444444444334433211 011 11111111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 256 VIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 256 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
+..=+. ..++-+-+++.+..+.+++...+...+....++++..++++++++..||...++.+.|+.+.....
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 211122 344556688999999999999999999999999999999999999999999999999999988443
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.42 Score=43.59 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHH--HHHHHHHHHHHHHHHHHhcCCCcccccCchhHHH--HHHHHHHH
Q 041425 188 GSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTT--IISFFGAIQSAILSLIIERNLPGWVLKGKLETIG--VIYCGMVG 263 (366)
Q Consensus 188 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~~ 263 (366)
....++.-+++--+..+..|.....++-|..... +|.+.+.+.+...-...--+.+.........|.. +++.+-
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~-- 90 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM-- 90 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH--
Confidence 3444555555555666777777777665555554 8888887777665554222333333333344432 233332
Q ss_pred HHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 264 SGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
...-.+++++.+....+++...+|+.+++.+..++|.+++...+.....+++|......
T Consensus 91 ----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 91 ----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred ----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 22245789999999999999999999999999999999999999999999998776543
No 103
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.69 Score=40.30 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH----------HHhhhccCCCCCCHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPI----------VYFRERKNRPKLTIHILCQ 74 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~----------~~~~~~~~~~~~~~~~~~~ 74 (366)
--.|.++++++..+-|.....-...-.+ .-+.-.+.+.-.+-+.+.+-.- +.+..|. ...+..
T Consensus 170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh------P~~~~~ 243 (337)
T KOG1580|consen 170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH------PYVFWD 243 (337)
T ss_pred cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc------cHHHHH
Confidence 3478899999998888887765544322 1122333333344444443322 2222221 245666
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 75 LFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
+...++.+ ++++.+.|.-..+-+|-..+++..+--.|+.+.+.+++..+++.+| |+|..+.+.|...=.
T Consensus 244 l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 244 LTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHh
Confidence 77888888 9999999999999999999999999999999999999999999999 999999998877643
No 104
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.40 E-value=0.044 Score=46.16 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 266 LCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
.+...|..++++++++.++.+...+-.+..++++++++++....+++..++.+.|++...+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 456678999999999999999999999999999999999999999999999999998877544
No 105
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.30 E-value=0.31 Score=42.00 Aligned_cols=135 Identities=18% Similarity=0.159 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhccCC----CCCCHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRERKNR----PKLTIHILCQLFFSALIGL 83 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~ 83 (366)
|++.+...-+.-+..-...|...+. +..-+...++..+++.++++.+-...+.+.. ..++.......++.|++.
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s- 234 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS- 234 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-
Confidence 3444433333333333334433321 3556788899999999988877655443221 123445566788889888
Q ss_pred HHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 84 TLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
+.-.+|.-++++.++....+++-.+.-.-.++.+.++++|+.++.. +.+++++++..++-.
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s------i~sillGflsg~iYa 295 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYA 295 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHH
Confidence 7778899999999999999999999888899999999999999999 999999987776654
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.01 E-value=0.52 Score=43.56 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHH-HHHHHHHHHHHHHHH-H-hcCCC-cccccCchhHHHHHHH
Q 041425 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTI-ISFFGAIQSAILSLI-I-ERNLP-GWVLKGKLETIGVIYC 259 (366)
Q Consensus 184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~l~~ 259 (366)
+...|+++..+++++.+.+.+-.||..+- + .+.... +.+++-+ ..|.... . -++.. .+...+...+....+.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~W-s--WEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKGW-S--WESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCCc-c--HHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 44799999999999999999999996543 2 222222 2333332 2332222 1 11211 1222233445555556
Q ss_pred HHHHHHHHHHHHHHHHhhcCcce-eeeccchhHHHHHHHHHHHcCC-------ccchhhHHHHHHHHHHHhhhhcc
Q 041425 260 GMVGSGLCYVGMSWCVKKRGPVF-TSAFSPLTQIVVAIFDFSVLRE-------RIYLGSALGSILVIVGMYILLWG 327 (366)
Q Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~pi~a~~~~~~~~~e-------~~s~~~~iG~~lii~g~~l~~~~ 327 (366)
|+ .-.++-..|..++++.+.+. .++..-+..++..++-.++.|+ +-....++|.++.++|+.+..+.
T Consensus 80 G~-lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 80 GV-LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HH-HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 66 36788888999999999755 3444555556666665554332 22346778999999999987764
No 107
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=0.66 Score=41.41 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhhhc----cCCCCC-CHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDR-GLNHLVIVAYRQSISVVFLAPIVYFRER----KNRPKL-TIHILCQLFFSA 79 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~g 79 (366)
.+.|+++...+++.-+...+..|..+.. |=.-+.+.++..+.+.++++|...+.+. ...++. .++.|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 5789999999999999999999966544 1225778899999999999998876542 222333 567778888888
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhcC
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKG 154 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~ 154 (366)
++++.++ +.-.+=++.++|-...+--..-...-.+++..+++|..+... |-+-++.+.|-..-++-+.
T Consensus 263 lfgF~mg-yvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 263 LFGFAMG-YVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHhh-heeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHHH
Confidence 8884444 334445566666544444444455557788899999999999 9999999999887765443
No 108
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.57 E-value=3.4 Score=37.61 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHhhhccCC-------CCC----CHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRG----LNHLVIVAYRQSISVVFLAPIVYFRERKNR-------PKL----TIH 70 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~-------~~~----~~~ 70 (366)
+..|..+...++++-|.-+.+.++.++++ -+|+...+--.-...+.++|..+..++... +.. -++
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 35788999999999999999999888652 236665555555555556665554443221 111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 71 ILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 71 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
....+...|.+. ++--.+-+.=++.++.-..++..-..-+.+.+++..+.+++++... |.|..++..|+.+=
T Consensus 242 v~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN------~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 242 VIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLN------WLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhH------HHHHHHHHHHHHHh
Confidence 333444455555 3333444455666776666777777788899999999999999999 99999999999876
No 109
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.22 E-value=2.7 Score=31.71 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425 11 LMMVAVNFGFATVNAFLRKIIDRGLNH------LVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT 84 (366)
Q Consensus 11 l~~~~~~~~~~~~~~~~k~~~~~~~~~------~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (366)
.-+++...+||.+.++.|.... |++. ....++|-..... .+|+++.. -.++ -
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~iP----FllN-q 63 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTLF----------------LNWEYLIP----FLLN-Q 63 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHHH----------------HhHHHHHH----HHHH-H
Confidence 4467788999999999997754 2332 2222222211110 12333332 2333 3
Q ss_pred HHHHHHHHhccccCchhhhhhc-cchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhh
Q 041425 85 LTQYFLLRGLEYTSATFLCAFL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLT 150 (366)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 150 (366)
-+..+||.-+++.+.+.+..+. ++.-.|+.+.+..+..|-...+. ++|..+.++|+.+.+
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhee
Confidence 4467888899999999998884 57888899999877655555666 899999999987753
No 110
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.17 E-value=2.6 Score=37.70 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHhhhc--cCC---CCCCHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIID-RGLNHLVIVAYRQSISVVFLAPIVYFRER--KNR---PKLTIHILCQLFFSA 79 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~l~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~g 79 (366)
+..|+.+.-.+.+.-+...-+-..... ++-+..+++++...++.++++..+..... +.+ -+.+++.+-..++.+
T Consensus 188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s 267 (367)
T KOG1582|consen 188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS 267 (367)
T ss_pred ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence 445666665555555554444333332 34567888999999998888776654321 011 123566666666666
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
..+ .++...-..-++.-.+..++.+...--.+|.+++++++.++++... ..+.++.+.|+.+=..
T Consensus 268 ~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 268 LAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMY 332 (367)
T ss_pred HHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcc
Confidence 666 5555544444555677777777777888999999999999999998 8899999999998653
No 111
>PRK02237 hypothetical protein; Provisional
Probab=87.12 E-value=2.5 Score=32.09 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=37.8
Q ss_pred eeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 284 SAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 284 s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
+...-+-.+.+.++.+.+-|++|+...++|..+.++|+.++.+.+
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 445556677888999999999999999999999999998776654
No 112
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.53 E-value=1.1 Score=40.11 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 263 GSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
+-..+..+++.++..++++...++.....+++.+++..+++.+++..+|.|+..+++|++.+-.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 5666777889999999999999999999999999999999999999999999999999887654
No 113
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=84.11 E-value=1.5 Score=39.78 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCC-----------cccccCchhHHHHHHHHH
Q 041425 193 IAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLP-----------GWVLKGKLETIGVIYCGM 261 (366)
Q Consensus 193 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~g~ 261 (366)
+++.+||+-+-..+|-..++...+ ....+=+..+.++...+..+.-+... +....+...+...+..|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 456678887777777776643322 12333334443333333333211111 111111122222333333
Q ss_pred HHHHHHHHHHHHHHhhcCcceeeecc-chhHHHHHHHHHHHcCCccc--hhhHHHHHHHHHHHhhhhc
Q 041425 262 VGSGLCYVGMSWCVKKRGPVFTSAFS-PLTQIVVAIFDFSVLRERIY--LGSALGSILVIVGMYILLW 326 (366)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~pi~a~~~~~~~~~e~~s--~~~~iG~~lii~g~~l~~~ 326 (366)
.--+++++..+++...+-+.+-++. .+..++.+.+.|+ ++.+.+ ...+.|.+++++++++-..
T Consensus 81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 4557999999999998877665554 3344445555553 344443 3556788888888877543
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=81.38 E-value=2.4 Score=32.08 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=37.3
Q ss_pred eccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcccc
Q 041425 285 AFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKS 329 (366)
Q Consensus 285 ~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~ 329 (366)
...-+-.+.+.++++.+-+++|+...++|..+.++|+.++.+.++
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 344455677889999999999999999999999999988776543
No 115
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=80.34 E-value=37 Score=29.18 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=24.2
Q ss_pred HHHHHHHcCCccchhhHHHHHHHH--HHHhhhhccc
Q 041425 295 AIFDFSVLRERIYLGSALGSILVI--VGMYILLWGK 328 (366)
Q Consensus 295 ~~~~~~~~~e~~s~~~~iG~~lii--~g~~l~~~~~ 328 (366)
-.+|..++.+..=+.+.+|..|.+ +|.+...+++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~ 168 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRE 168 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455778888888888888887766 4655555443
No 116
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=79.71 E-value=3.2 Score=37.24 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCccc-ccCchhHHHHHHHHHHHH
Q 041425 186 IIGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILSLIIERNLPGWV-LKGKLETIGVIYCGMVGS 264 (366)
Q Consensus 186 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~~ 264 (366)
..++...+.++++-.+..=...+..+. +..-+++-++++-++-.++.. .+..... --+-..+...+.+ -
T Consensus 5 ~~ai~~vf~GCcsnvv~lE~L~~~~pg--sgNLITFaqFlFia~eGlif~----skf~~~k~kiplk~Y~i~V~m----F 74 (330)
T KOG1583|consen 5 AAAISLVFGGCCSNVVFLELLVRNEPG--SGNLITFAQFLFIATEGLIFT----SKFFTVKPKIPLKDYAITVAM----F 74 (330)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHhCCC--CeeehHHHHHHHHHHhceeee----ccccccCCCCchhhhheehhe----e
Confidence 345556666666655543333332222 223466666666555444333 2211111 1122233322211 2
Q ss_pred HHHHHHHHHHHhh-cCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccchhhh
Q 041425 265 GLCYVGMSWCVKK-RGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSKEIEE 334 (366)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~ 334 (366)
.....+.+++++. ++...-.++..-.++..+++++++.|.+-+..|+....++-+|+++....+.++-+.
T Consensus 75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 3456677888876 666778889999999999999999999999999999999999999988776665444
No 117
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=77.73 E-value=5.5 Score=30.08 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCcceeeecc-chhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425 267 CYVGMSWCVKKRGPVFTSAFS-PLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~~s~~~-~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~ 324 (366)
+-.+|+.-+.+.+-+.+..+. ++.-.++.+.+..+-.|......+.|..++++|+++.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 445677778888877766654 5577888889986666667788889999999998764
No 118
>PRK02237 hypothetical protein; Provisional
Probab=77.17 E-value=7.8 Score=29.49 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=37.9
Q ss_pred chhhhh-hccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 99 ATFLCA-FLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 99 ~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
.+.+-. --....+...+..+.+.++|+++.+ ++|..++++|+.++.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 454433 3446677777889999999999999 9999999999998854
No 119
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=75.65 E-value=42 Score=28.97 Aligned_cols=30 Identities=0% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCchh
Q 041425 71 ILCQLFFSALIGLTLTQYFLLRGLEYTSATF 101 (366)
Q Consensus 71 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 101 (366)
.+...+..++.. .+.+...+.....+|+..
T Consensus 145 ~~~k~~~~~~~~-~~~w~~~~~~~~~lp~~i 174 (206)
T PF06570_consen 145 SWWKYILISVLA-MVLWIVIFVLTSFLPPVI 174 (206)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccccC
Confidence 333334444444 444455555555566553
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.10 E-value=3.6 Score=31.10 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHcCCccchhhHHHHHHHHHHHhhh
Q 041425 295 AIFDFSVLRERIYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 295 ~~~~~~~~~e~~s~~~~iG~~lii~g~~l~ 324 (366)
+.++.++++|++++....|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456778999999999999999999887654
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=72.63 E-value=9.6 Score=28.75 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=38.4
Q ss_pred eeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhcccc
Q 041425 283 TSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKS 329 (366)
Q Consensus 283 ~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~ 329 (366)
.+...-+-.+.+.++.+++=+.+|+...++|..+.++|+.++....+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 34456667788888999999999999999999999999877766543
No 122
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.58 E-value=7.9 Score=29.40 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=41.1
Q ss_pred ccccCchhh-hhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 94 LEYTSATFL-CAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 94 l~~~~~~~~-~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
++-.+.+.+ +.--....+...+..+.+.|+++++.+ ++|..++++|+.++.+
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 444444554 333457778888899999999999999 9999999999999864
No 123
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=70.24 E-value=5 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHhhhh
Q 041425 309 GSALGSILVIVGMYILL 325 (366)
Q Consensus 309 ~~~iG~~lii~g~~l~~ 325 (366)
..++|..+.+.|++...
T Consensus 88 ~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34457777777766554
No 124
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.96 E-value=13 Score=27.61 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 294 VAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 294 a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
=..++.+.++|++.+..+.|..+++.|++...+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 345688899999999999999999999887654
No 125
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=66.91 E-value=1.1e+02 Score=30.66 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHcCCccch-hhHHHHHHHHHHHhh
Q 041425 287 SPLTQIVVAIFDFSVLRERIYL-GSALGSILVIVGMYI 323 (366)
Q Consensus 287 ~~~~pi~a~~~~~~~~~e~~s~-~~~iG~~lii~g~~l 323 (366)
....|+-+.+.|.+.-.-.++. ..+.|+++++.+++.
T Consensus 353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555432222222 233344444444433
No 126
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=65.92 E-value=2 Score=38.47 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred CchhhhhhccchhHHH--HHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425 98 SATFLCAFLNTVPVIT--FLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL 148 (366)
Q Consensus 98 ~~~~~~~i~~~~p~~~--~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 148 (366)
+-+..+++.+...+++ .++-++|.|+-+.+.. .+++++.++-..+
T Consensus 48 t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLG------lLCiilimi~lLv 94 (381)
T PF05297_consen 48 TQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLG------LLCIILIMIVLLV 94 (381)
T ss_dssp -----------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------HHHHHHHHHHHHH
Confidence 3333444544333333 3333334444455555 5555554443333
No 127
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=63.71 E-value=7.2 Score=34.69 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHH
Q 041425 5 GQWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLT 84 (366)
Q Consensus 5 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (366)
+..+|=.++++++-++|.+++.=.+..++ .|-.++..+-.++++++-..-. +..++....+.|..-....+...+..+
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ~-i~~~~~~~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQF-IFERHHVSTLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHHH-hhhccceeeEeehHHHHHHHHHHHHHH
Confidence 45577778888999999999988888886 9999988888888888876664 344544444444322222222333324
Q ss_pred HHHHHHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 85 LTQYFLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+.+.+.=.-++..++....+-.-++-.+..++ ..++-+..|.- .++-.....|.++-
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY------~laF~~i~~GliiY 297 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLY------FLAFATIATGLIIY 297 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhh------HHHHHHHHHhhEEe
Confidence 44444444445445444433334455555555 45566677776 77777777776664
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=62.39 E-value=63 Score=24.48 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=35.6
Q ss_pred hhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 104 AFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 104 ~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
.--........+..+.+-+.++.+.+ +.|..+++.|+.++.+
T Consensus 63 AYGGvyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred HhcchHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 33456677778888899999999999 9999999999988864
No 129
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=61.62 E-value=47 Score=25.22 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhccc-----cCchhhhhhcc-chhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 82 GLTLTQYFLLRGLEY-----TSATFLCAFLN-TVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 82 ~~~~~~~~~~~al~~-----~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
+.+..-+|+..--++ .++++--+++= .+-..-.+++.+++||++++.. ..|-++.+.++.++
T Consensus 39 gIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~------l~af~~i~~av~fi 106 (108)
T PF04342_consen 39 GIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY------LWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH------HHHHHHHHHhhhee
Confidence 334555555443333 33444444432 3333446777889999999999 88887776666544
No 130
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=61.22 E-value=7.3 Score=35.52 Aligned_cols=130 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhcc------CCC-------CCCHHHHHHHHHHH
Q 041425 13 MVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERK------NRP-------KLTIHILCQLFFSA 79 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~------~~~-------~~~~~~~~~~~~~g 79 (366)
|+++.++||+....-|.+-.++- ..+...+-+.++.++...+.-+.... ..| +-++......++-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 35678999999999997766532 23345556666655554444332111 111 22566666666667
Q ss_pred HHHHHHHHHHHHHhccccCchhhhhhc-cchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 80 LIGLTLTQYFLLRGLEYTSATFLCAFL-NTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
++. .+++.+..+|+.+...+.+-++. .+.-+....+-++. ..|.++-.+ ...|+.+.++.+++-
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~i----LF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEI----LFPGVACFLIAIILG 144 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceE----EEccHHHHHHHHHHH
Confidence 766 89999999999999888876664 34444455555543 566654430 033555555555443
No 131
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=55.91 E-value=1.9e+02 Score=28.23 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=39.4
Q ss_pred hhhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHH
Q 041425 118 LPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCT 197 (366)
Q Consensus 118 ~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 197 (366)
=.+-|.++++.|+. ++|+.++++=++++++. +....+..+.+.|+.
T Consensus 316 E~~~~~~iHpiQY~----LVGlAl~lFYlLLLSlS------------------------------Ehi~F~~AYliAa~a 361 (430)
T PF06123_consen 316 ELLSKLRIHPIQYL----LVGLALVLFYLLLLSLS------------------------------EHIGFNLAYLIAALA 361 (430)
T ss_pred HHHhcCcccHHHHH----HHHHHHHHHHHHHHHHH------------------------------hhhchHHHHHHHHHH
Confidence 34558888988855 66677666666666541 222455566677777
Q ss_pred HHHHHHHHHHHhccc
Q 041425 198 TWSSWFLMQARIGKR 212 (366)
Q Consensus 198 ~~a~~~v~~~~~~~~ 212 (366)
+-++-..+.+...++
T Consensus 362 ~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 362 CIGLISLYLSSVLKS 376 (430)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776665
No 132
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=53.69 E-value=2e+02 Score=27.17 Aligned_cols=8 Identities=13% Similarity=0.081 Sum_probs=3.7
Q ss_pred HHHHHcCC
Q 041425 297 FDFSVLRE 304 (366)
Q Consensus 297 ~~~~~~~e 304 (366)
+-..++||
T Consensus 113 i~~~l~g~ 120 (385)
T PF03547_consen 113 ILQALFGE 120 (385)
T ss_pred HHHHHhcc
Confidence 33345555
No 133
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=52.17 E-value=2.3e+02 Score=27.48 Aligned_cols=7 Identities=0% Similarity=-0.401 Sum_probs=3.0
Q ss_pred CCChHHH
Q 041425 34 GLNHLVI 40 (366)
Q Consensus 34 ~~~~~~~ 40 (366)
|.++.+.
T Consensus 50 g~s~~~~ 56 (455)
T TIGR00892 50 QATYSET 56 (455)
T ss_pred CcchhHH
Confidence 4444443
No 134
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=50.81 E-value=20 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=11.9
Q ss_pred cchhhHHHHHHHHHHHhhh
Q 041425 306 IYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 306 ~s~~~~iG~~lii~g~~l~ 324 (366)
|+|..++=.++|+.|++.+
T Consensus 2 p~wlt~iFsvvIil~If~~ 20 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAW 20 (49)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5666666666667666543
No 135
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=49.05 E-value=2.2e+02 Score=27.92 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhhcc
Q 041425 311 ALGSILVIVGMYILLWG 327 (366)
Q Consensus 311 ~iG~~lii~g~~l~~~~ 327 (366)
..|+.+++.+++....+
T Consensus 417 ~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 417 LMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 44555555555544443
No 136
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.34 E-value=13 Score=29.16 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhhcc
Q 041425 311 ALGSILVIVGMYILLWG 327 (366)
Q Consensus 311 ~iG~~lii~g~~l~~~~ 327 (366)
++|++++++.+++..++
T Consensus 74 ~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555444433333
No 137
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=42.23 E-value=3.5e+02 Score=26.67 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHHhhhhccc
Q 041425 306 IYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 306 ~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999988776543
No 138
>PF15102 TMEM154: TMEM154 protein family
Probab=41.00 E-value=17 Score=29.38 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhccccchhhh
Q 041425 312 LGSILVIVGMYILLWGKSKEIEE 334 (366)
Q Consensus 312 iG~~lii~g~~l~~~~~~~~~~~ 334 (366)
++.+|++..++++.+.|+|+.+.
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHheeEEeecccCC
Confidence 34445555566665555544433
No 139
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.27 E-value=16 Score=29.47 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred cCcceeeeccchhHHHHHHHHHHH-----cCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 278 RGPVFTSAFSPLTQIVVAIFDFSV-----LRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 278 ~~~~~~s~~~~~~pi~a~~~~~~~-----~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
-+....+.+.|+.|.++++++.++ ++|.. .++|+.+-.+..++..++..|
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~---~~~~~~lg~~l~fl~~r~ysR 126 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAILAQYLFFSELI---VIFGAFLGLALGFLLARRYSR 126 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777777666544 34432 334444444444444444333
No 140
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=39.90 E-value=2.1e+02 Score=27.87 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHcC-CccchhhHHHHHHHHHHHhhhhccccchhhhhhhh
Q 041425 288 PLTQIVVAIFDFSVLR-ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQM 338 (366)
Q Consensus 288 ~~~pi~a~~~~~~~~~-e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~~~~~ 338 (366)
.+-|+++.+ +++.++ ..-.....-|++.+++|++++.+.|.++++..-++
T Consensus 167 al~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ 217 (448)
T COG2271 167 ALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP 217 (448)
T ss_pred chHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 344555544 555554 33444555688899999999888777776654443
No 141
>PRK11010 ampG muropeptide transporter; Validated
Probab=38.85 E-value=3.7e+02 Score=26.49 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHhhhhc
Q 041425 309 GSALGSILVIVGMYILLW 326 (366)
Q Consensus 309 ~~~iG~~lii~g~~l~~~ 326 (366)
...+..++.+.|+++..+
T Consensus 384 ~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 384 FYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555666555543
No 142
>PRK11715 inner membrane protein; Provisional
Probab=38.01 E-value=4e+02 Score=26.09 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=35.6
Q ss_pred hhccccccccccccccceehhhhhhhhhhHhhhhcCcccCCCCCCCccccccccccccccccccchhHHHHHHHHHHHHH
Q 041425 119 PFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYKGKLISNPHLPATNYNVTSHAKMMISSKKTERWIIGSIFLIAGCTT 198 (366)
Q Consensus 119 ~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~ 198 (366)
.+-|.|+++.|+. ++|+.++++=..++++. +....+..+.+.|+.+
T Consensus 323 ~~~~~~iHpiQYl----LVGlAl~lFYLLLLSlS------------------------------EHigF~~AYliAa~a~ 368 (436)
T PRK11715 323 LLKKLRIHPVQYL----LVGLALVLFYLLLLSLS------------------------------EHIGFTLAYLIAALAC 368 (436)
T ss_pred HhcCceecHHHHH----HHHHHHHHHHHHHHHHH------------------------------hhhchHHHHHHHHHHH
Confidence 3447888888855 56666666666666541 2223455566666666
Q ss_pred HHHHHHHHHHhccc
Q 041425 199 WSSWFLMQARIGKR 212 (366)
Q Consensus 199 ~a~~~v~~~~~~~~ 212 (366)
-..-..+.....++
T Consensus 369 v~li~~Y~~~vl~~ 382 (436)
T PRK11715 369 VLLIGFYLSAVLRS 382 (436)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666665554
No 143
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=37.86 E-value=3.5e+02 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=11.2
Q ss_pred cchhhHHHHHHHHHHHhhh
Q 041425 306 IYLGSALGSILVIVGMYIL 324 (366)
Q Consensus 306 ~s~~~~iG~~lii~g~~l~ 324 (366)
.+....++.++.+.++++.
T Consensus 368 ~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666554
No 144
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=36.18 E-value=5.5e+02 Score=27.21 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=29.3
Q ss_pred chhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHh
Q 041425 99 ATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLL 149 (366)
Q Consensus 99 ~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 149 (366)
.+.+.++..+.|.-.+.++.....+|.+... +.+.+-.++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 3566778889999999888887665543333 44444445555544
No 145
>PF15345 TMEM51: Transmembrane protein 51
Probab=34.57 E-value=28 Score=30.46 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhccccchhhhhh
Q 041425 312 LGSILVIVGMYILLWGKSKEIEEFD 336 (366)
Q Consensus 312 iG~~lii~g~~l~~~~~~~~~~~~~ 336 (366)
.|++|.+..+++-.+.|+|++...+
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4788888888888776666544433
No 146
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=32.49 E-value=32 Score=29.25 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.6
Q ss_pred HHHHHH
Q 041425 264 SGLCYV 269 (366)
Q Consensus 264 ~~~~~~ 269 (366)
++++++
T Consensus 101 GAlGNl 106 (185)
T PRK14774 101 GALGNV 106 (185)
T ss_pred HHHHHH
Confidence 344444
No 147
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=32.14 E-value=58 Score=18.67 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=9.1
Q ss_pred cchhhHHHHHHHHHHHh
Q 041425 306 IYLGSALGSILVIVGMY 322 (366)
Q Consensus 306 ~s~~~~iG~~lii~g~~ 322 (366)
-++..++|.+++..+.+
T Consensus 10 ~~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGL 26 (34)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34566677744444333
No 148
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.09 E-value=32 Score=30.74 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHhhhhccccch
Q 041425 308 LGSALGSILVIVGMYILLWGKSKE 331 (366)
Q Consensus 308 ~~~~iG~~lii~g~~l~~~~~~~~ 331 (366)
..|++|-+++++|.+......-|+
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeee
Confidence 378999999999988877654443
No 149
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.45 E-value=5.5e+02 Score=25.55 Aligned_cols=115 Identities=16% Similarity=0.044 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-----HHHHHHHhhhccCCCCCCHHHHHHHHHHHH
Q 041425 6 QWMPVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVV-----FLAPIVYFRERKNRPKLTIHILCQLFFSAL 80 (366)
Q Consensus 6 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (366)
++.+++.-.+...+-+....+.|.. -.+..+.+.|++.+.- .+.|.+ +.+- -|+..|...-.+ ..+
T Consensus 89 RK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~li~GR~i~Gl~~gl~~~~~pmy-l~E~--sP~~~RG~~g~~--~~~ 159 (485)
T KOG0569|consen 89 RKNALLLSNLLAVLAALLMGLSKSA----PSFEMLILGRLIVGLACGLSTGLVPMY-LTEI--SPKNLRGALGTL--LQI 159 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhHHHHHHHHHH-Hhhc--ChhhhccHHHHH--HHH
Confidence 4455555555555555555566633 2355666777776632 222322 2222 121111111111 111
Q ss_pred HHHHHHHHHHHHhccccC--ch--hhhhhccchhHHHHHHhhhhccccccccc
Q 041425 81 IGLTLTQYFLLRGLEYTS--AT--FLCAFLNTVPVITFLLALPFGLEKVNVNG 129 (366)
Q Consensus 81 ~~~~~~~~~~~~al~~~~--~~--~~~~i~~~~p~~~~lla~~~~~e~~~~~~ 129 (366)
.....-......++.+.- .. .........|....++...++.|.+.+.-
T Consensus 160 ~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll 212 (485)
T KOG0569|consen 160 GVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLL 212 (485)
T ss_pred HHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 111112222344444432 11 23344556666777777777788776543
No 150
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=29.29 E-value=48 Score=28.25 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=6.5
Q ss_pred hhhhhhhhhhHhh
Q 041425 138 GTVVCVGGAVLLT 150 (366)
Q Consensus 138 g~~l~~~Gv~li~ 150 (366)
+..--+.|++...
T Consensus 14 ~~tsF~lGvlf~~ 26 (196)
T smart00786 14 GSTSFFLGILFAN 26 (196)
T ss_pred hhHHHHHHHHHhc
Confidence 3333455666654
No 151
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=28.50 E-value=3.7e+02 Score=22.87 Aligned_cols=114 Identities=8% Similarity=0.042 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041425 9 PVLMMVAVNFGFATVNAFLRKIIDRGLNHLVIVAYRQSISVVFLAPIVYFRERKNRPKLTIHILCQLFFSALIGLTLTQY 88 (366)
Q Consensus 9 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (366)
++++.=+-+++-|.+..+.+.+.. ..-..+...-.+.++.+...+.+..+.+.....+...|. .++..... .+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~~--~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K-~~lv~~~s-m~lWi 176 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQV--YGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWK-YLLVAVLS-MLLWI 176 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHH-HHHHHHHH-HHHHH
Confidence 455555566677777777776433 333444443333344433333322111111111112222 23333333 44455
Q ss_pred HHHHhccccCchhhhhhccchhHHHHHHh------hhhccccccccc
Q 041425 89 FLLRGLEYTSATFLCAFLNTVPVITFLLA------LPFGLEKVNVNG 129 (366)
Q Consensus 89 ~~~~al~~~~~~~~~~i~~~~p~~~~lla------~~~~~e~~~~~~ 129 (366)
+.+.+-..+|++..-. +.|+.-.+++ ++.+|+|.|...
T Consensus 177 ~v~i~t~~lPtslN~~---L~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 177 AVMIATVFLPTSLNPQ---LPPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred HHHHHHhhCCCcCCcC---CchHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5566667777764433 3333333333 344566666543
No 152
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=27.97 E-value=51 Score=28.22 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhh----ccccchhhhhhhhhhhhhhhhhhhhhhcccCCCCCCC
Q 041425 314 SILVIVGMYILL----WGKSKEIEEFDQMKQGQAAQQDERCDAASHVIPITSN 362 (366)
Q Consensus 314 ~~lii~g~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (366)
++++++|+++.. +.+++++++.++-.+++.++++...+++.+...+...
T Consensus 140 i~~~LvGVLvLQaG~~YAe~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 192 (196)
T PF08229_consen 140 IALVLVGVLVLQAGQWYAERKDAKELEEFEKEEAEAAAAAAEKEEKKKEKKES 192 (196)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHhhhccccccchhhhh
No 153
>PRK10489 enterobactin exporter EntS; Provisional
Probab=27.88 E-value=5.2e+02 Score=24.38 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHhhhhc
Q 041425 308 LGSALGSILVIVGMYILLW 326 (366)
Q Consensus 308 ~~~~iG~~lii~g~~l~~~ 326 (366)
...+.|....+++++....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 380 SASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344555555556555444
No 154
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=27.11 E-value=48 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=27.0
Q ss_pred ceeeeccchhHHHHHHHHHHHcCCccc-hhhHHH-HHHHHHHHhhhh
Q 041425 281 VFTSAFSPLTQIVVAIFDFSVLRERIY-LGSALG-SILVIVGMYILL 325 (366)
Q Consensus 281 ~~~s~~~~~~pi~a~~~~~~~~~e~~s-~~~~iG-~~lii~g~~l~~ 325 (366)
...+.+..+.|..+..++..+-+-.+. ..+++| ..++..|.....
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777655543334 456665 555667877664
No 155
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.05 E-value=1.2e+02 Score=25.33 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=29.9
Q ss_pred HHHHhccccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhhhc
Q 041425 89 FLLRGLEYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTLYK 153 (366)
Q Consensus 89 ~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 153 (366)
.++.+.+..+.-.++...-...+....+.|+..|+ +...+ ...++.+.+.|..-+.+.+
T Consensus 12 ~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~rk-v~km~-----l~s~~~v~vFG~lTl~f~~ 70 (180)
T COG2917 12 LFFAAYKVYGIYAATAVLIVATVIQLAILWIKYRK-VEKMQ-----LISGVVVVVFGGLTLIFHN 70 (180)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHH-----HHHHHHHHHhchhHhhccC
Confidence 33334444344444444444556666677766654 33333 0345555566666665433
No 156
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=26.96 E-value=58 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=21.7
Q ss_pred ccchhhHHHHHHHHHHHhhhhccccchh
Q 041425 305 RIYLGSALGSILVIVGMYILLWGKSKEI 332 (366)
Q Consensus 305 ~~s~~~~iG~~lii~g~~l~~~~~~~~~ 332 (366)
..++..++|..++++|..++..++.+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4577889999999999999876554443
No 157
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=26.92 E-value=3.7e+02 Score=22.32 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCCchhHHHHHHHHHHHHHHHHH
Q 041425 184 RWIIGSIFLIAGCTTWSSWFLMQARIGKR-----FPCQYSSTTIISFFGAIQSAILS 235 (366)
Q Consensus 184 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ 235 (366)
+.......++.++..|++-.+.-....+| .|.|..-..+.++.+.+++..++
T Consensus 129 ~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 129 NFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 34677788889999998887776665544 23444444455555555554443
No 158
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=25.01 E-value=6.5e+02 Score=24.54 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 259 CGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
.+++.....|++| -|+...|...-+.. -.--+..-++..++|.++.++.+.....+.
T Consensus 249 ssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 249 SSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 3554444556655 56666664444444 011234467788899999999987776543
No 159
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.19 E-value=61 Score=22.35 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhhhccccc
Q 041425 309 GSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 309 ~~~iG~~lii~g~~l~~~~~~~ 330 (366)
.-+++++.+++|.+++....++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3457777888888777654333
No 160
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.50 E-value=3.2e+02 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041425 69 IHILCQLFFSALIGLTLTQYFLLRGLE 95 (366)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~~al~ 95 (366)
++.+..-+..|+.++++.+.+ ++++-
T Consensus 82 ~~~f~~~f~~Gl~tyVl~Wtf-~Y~lv 107 (110)
T KOG4455|consen 82 RNLFTESFLGGLTTYVLAWTF-FYGLV 107 (110)
T ss_pred hHHHHHHHhchHHHHHHHHHH-Hhhhh
Confidence 356666777888885555544 44543
No 161
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.34 E-value=66 Score=19.81 Aligned_cols=18 Identities=22% Similarity=0.975 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhcccc
Q 041425 312 LGSILVIVGMYILLWGKS 329 (366)
Q Consensus 312 iG~~lii~g~~l~~~~~~ 329 (366)
+|.++++.+.+++.|.++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 355566666666654443
No 162
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=22.75 E-value=5.8e+02 Score=23.11 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcccCC
Q 041425 197 TTWSSWFLMQARIGKRFP 214 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~ 214 (366)
+.+.+......++.+++.
T Consensus 41 ~~~~~~~~~~g~l~dr~g 58 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRSN 58 (379)
T ss_pred HHHHhhhhhhhHHHHhhC
Confidence 333444444444444433
No 163
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.75 E-value=36 Score=22.94 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhhhccccc
Q 041425 310 SALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 310 ~~iG~~lii~g~~l~~~~~~~ 330 (366)
+++|.+|++.|+.+..+..+.
T Consensus 1 kiigi~Llv~GivLl~~G~~~ 21 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGYQA 21 (59)
T ss_pred CeeeehHHHHHHHHHHhhhhh
Confidence 357899999999998876543
No 164
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=22.66 E-value=7.2e+02 Score=24.21 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 113 TFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 113 ~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
..+++.++.+-|.. . +.--+.+.+|+.++++
T Consensus 7 ~~~~~~~~~g~~~~--~------~~~~~~~~~~~~~~~~ 37 (433)
T PRK09412 7 IIVLLAIFLGARLG--G------IGIGFAGGLGVLILTF 37 (433)
T ss_pred HHHHHHHHHhHhhh--H------HHHHHHHHHHHHHHHH
Confidence 34556666666642 1 1222234566666654
No 165
>PRK15049 L-asparagine permease; Provisional
Probab=22.41 E-value=7.4e+02 Score=24.52 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=4.0
Q ss_pred cchhHHHHHH
Q 041425 287 SPLTQIVVAI 296 (366)
Q Consensus 287 ~~~~pi~a~~ 296 (366)
....++++.+
T Consensus 422 ~p~~~~~~l~ 431 (499)
T PRK15049 422 APFTSWLTLL 431 (499)
T ss_pred ccHHHHHHHH
Confidence 3334444433
No 166
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.24 E-value=2.6e+02 Score=20.52 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeeeccchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhc
Q 041425 250 KLETIGVIYCGMVGSGLCYVGMSWCVKKRGPVFTSAFSPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLW 326 (366)
Q Consensus 250 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~ 326 (366)
...|+..+.++++..++.....+|..... .....+-=.+...+|++++++|..+..+
T Consensus 29 sp~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 29 SPRWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CCccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHcc
Confidence 34577777777776666666655544433 0011112267788999999999877654
No 167
>PHA03049 IMV membrane protein; Provisional
Probab=22.18 E-value=79 Score=21.71 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhhhccc
Q 041425 310 SALGSILVIVGMYILLWGK 328 (366)
Q Consensus 310 ~~iG~~lii~g~~l~~~~~ 328 (366)
.+++++.+++|.+++-...
T Consensus 6 ~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777877765433
No 168
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=21.49 E-value=3e+02 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHhhhhc
Q 041425 308 LGSALGSILVIVGMYILLW 326 (366)
Q Consensus 308 ~~~~iG~~lii~g~~l~~~ 326 (366)
....+|+.+-+.=+.++.+
T Consensus 188 ipN~iG~~l~~~QL~Ly~~ 206 (243)
T KOG1623|consen 188 IPNVLGFLLGLIQLILYFK 206 (243)
T ss_pred cccHHHHHHHHHHHHHhhh
Confidence 3445777777777777633
No 169
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.44 E-value=6.4e+02 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhcccCC
Q 041425 197 TTWSSWFLMQARIGKRFP 214 (366)
Q Consensus 197 ~~~a~~~v~~~~~~~~~~ 214 (366)
+.+.+.......+.+|+.
T Consensus 58 ~~~~~~~~~~G~l~Dr~g 75 (405)
T TIGR00891 58 ISRWFGALMFGLWGDRYG 75 (405)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333444444444444433
No 170
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.41 E-value=42 Score=26.70 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=12.0
Q ss_pred eeeeccchhHHHHHHHHHHH
Q 041425 282 FTSAFSPLTQIVVAIFDFSV 301 (366)
Q Consensus 282 ~~s~~~~~~pi~a~~~~~~~ 301 (366)
..+.+.|+-|++.++++.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777766543
No 171
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=21.08 E-value=7.5e+02 Score=23.81 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccccc
Q 041425 289 LTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 289 ~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~~~ 330 (366)
.-+.++.++..+.+.. .....++..+.+.++.+..+.+++
T Consensus 388 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 427 (435)
T PRK10435 388 ICSVLGCVFCFIALMG--ASSFELAGTFIVSLIILMFYARKM 427 (435)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444432 233445555555555554444333
No 172
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=21.06 E-value=1.8e+02 Score=17.41 Aligned_cols=23 Identities=4% Similarity=0.187 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041425 186 IIGSIFLIAGCTTWSSWFLMQAR 208 (366)
Q Consensus 186 ~~G~~~~l~aa~~~a~~~v~~~~ 208 (366)
..-++.-++.+.+|++|++..-.
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667888999999999986543
No 173
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.99 E-value=2.8e+02 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041425 8 MPVLMMVAVNFGFATVNAFLRKI 30 (366)
Q Consensus 8 ~g~l~~~~~~~~~~~~~~~~k~~ 30 (366)
.|+...++.++..|......-..
T Consensus 111 ~gi~tli~~~i~~G~~~~~~~~~ 133 (206)
T PF06570_consen 111 YGIITLILVSIVGGLVFYFIFKY 133 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777766655544433
No 174
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=20.46 E-value=61 Score=31.60 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.4
Q ss_pred HhhcCc
Q 041425 275 VKKRGP 280 (366)
Q Consensus 275 ~~~~~~ 280 (366)
.+..++
T Consensus 359 ~~~~~~ 364 (455)
T TIGR00892 359 MDLVGA 364 (455)
T ss_pred HHHhhH
Confidence 344443
No 175
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.40 E-value=1.6e+02 Score=23.23 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=9.0
Q ss_pred CCccchhhHHHHHHHHHHHh
Q 041425 303 RERIYLGSALGSILVIVGMY 322 (366)
Q Consensus 303 ~e~~s~~~~iG~~lii~g~~ 322 (366)
+++.+..++.|-++.-.|..
T Consensus 74 n~~~si~~~~G~vlLs~GLm 93 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLM 93 (129)
T ss_pred cCCcchhhhehHHHHHHHHH
Confidence 33444444445444444433
No 176
>PRK11469 hypothetical protein; Provisional
Probab=20.10 E-value=53 Score=27.97 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=27.6
Q ss_pred eeccchhHHHHHHHHHHHcCCccchhhHHHHH-HHHHHHhhhh
Q 041425 284 SAFSPLTQIVVAIFDFSVLRERIYLGSALGSI-LVIVGMYILL 325 (366)
Q Consensus 284 s~~~~~~pi~a~~~~~~~~~e~~s~~~~iG~~-lii~g~~l~~ 325 (366)
+..+...|..+...+..+-+-.+....|+|.. ++..|..+..
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557778888888876655555566787755 4456877655
No 177
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=20.03 E-value=70 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=29.6
Q ss_pred cccCchhhhhhccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhH
Q 041425 95 EYTSATFLCAFLNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVL 148 (366)
Q Consensus 95 ~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 148 (366)
.--++-.++.+.|+.|+++.+++.++ -+.+...+ .+.++.++.|..+
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e------~~~~~~~~lg~~l 116 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSE------LIVIFGAFLGLAL 116 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhh------HHHHHHHHHHHHH
Confidence 33455677888999999998888755 34444444 4444444444433
No 178
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=20.01 E-value=6.1e+02 Score=22.38 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 041425 187 IGSIFLIAGCTTWSSWFLMQARIGKRFPCQYSSTTIISFFGAIQSAILS 235 (366)
Q Consensus 187 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 235 (366)
.|....+.-.++..+...+.+.. +++.....+....+.++...-.
T Consensus 41 mGlA~~~Vl~~S~~~~sllr~~i----~~~lRi~v~IlvIA~~V~~v~~ 85 (231)
T PRK12405 41 LGLATTLVLVCSNLTVSLLRKWI----PKEIRIPIFVMIIASFVTVVQL 85 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333 3334555555555555444433
Done!