Query 041425
Match_columns 366
No_of_seqs 174 out of 1868
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 2.8E-10 9.4E-15 90.5 5.3 70 259-328 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 4.4E-08 1.5E-12 75.1 7.1 70 259-328 35-105 (110)
3 3b5d_A Multidrug transporter E 98.5 4.4E-07 1.5E-11 69.4 9.7 69 77-151 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.5 1.1E-07 3.7E-12 75.5 5.8 69 77-151 34-103 (137)
5 3b9w_A Ammonium transporter fa 48.9 1.6E+02 0.0056 27.1 14.2 24 72-95 176-199 (407)
6 3rko_J NADH-quinone oxidoreduc 47.8 1.1E+02 0.0038 24.8 12.0 36 294-329 126-163 (184)
7 1pw4_A Glycerol-3-phosphate tr 35.9 2.4E+02 0.0082 25.2 23.0 15 112-126 198-212 (451)
8 3l1l_A Arginine/agmatine antip 34.6 59 0.002 29.9 6.0 22 309-330 409-430 (445)
9 2jo1_A Phospholemman; FXYD1, N 25.4 28 0.00096 23.2 1.3 19 310-328 21-39 (72)
10 2zxe_G FXYD10, phospholemman-l 24.0 49 0.0017 22.3 2.3 21 310-330 24-44 (74)
11 2jp3_A FXYD domain-containing 22.5 50 0.0017 21.8 2.1 20 310-329 22-41 (67)
12 4aps_A DI-OR tripeptide H+ sym 20.7 4.7E+02 0.016 23.6 11.0 151 190-350 58-219 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.01 E-value=2.8e-10 Score=90.53 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 259 CGMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
++++++++++.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.67 E-value=4.4e-08 Score=75.09 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcceeeec-cchhHHHHHHHHHHHcCCccchhhHHHHHHHHHHHhhhhccc
Q 041425 259 CGMVGSGLCYVGMSWCVKKRGPVFTSAF-SPLTQIVVAIFDFSVLRERIYLGSALGSILVIVGMYILLWGK 328 (366)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~pi~a~~~~~~~~~e~~s~~~~iG~~lii~g~~l~~~~~ 328 (366)
.++++..+++.++.+++|+.+.+.+-.+ ..+.|+++.+++++++||++|..+++|.++|+.|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556778999999999999999999888 899999999999999999999999999999999999887643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.55 E-value=4.4e-07 Score=69.44 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 77 FSALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
+.+++.+.+++.++.+++++.|.+.+..+ ..+.|+++.+++++++||++++.+ ++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45566668999999999999999999888 799999999999999999999999 9999999999999853
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.52 E-value=1.1e-07 Score=75.52 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCchhhhhh-ccchhHHHHHHhhhhccccccccccccccceehhhhhhhhhhHhhh
Q 041425 77 FSALIGLTLTQYFLLRGLEYTSATFLCAF-LNTVPVITFLLALPFGLEKVNVNGLAGKTKVLGTVVCVGGAVLLTL 151 (366)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 151 (366)
+.+++.+.+++.++++++++.|++.+..+ .++.|+++.++++++++|++++.+ ++|+.+.+.|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 46666669999999999999999999888 899999999999999999999999 9999999999999864
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=48.92 E-value=1.6e+02 Score=27.07 Aligned_cols=24 Identities=8% Similarity=-0.161 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 041425 72 LCQLFFSALIGLTLTQYFLLRGLE 95 (366)
Q Consensus 72 ~~~~~~~g~~~~~~~~~~~~~al~ 95 (366)
-..+..+|.+..-.++..+|-++.
T Consensus 176 n~~~~~lGt~lLW~GWfGFN~Gl~ 199 (407)
T 3b9w_A 176 SDRFSMLGSMVLWLFWPSFATAIV 199 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344556666656788999998843
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=47.77 E-value=1.1e+02 Score=24.77 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCccchhhHHHHHHHH--HHHhhhhcccc
Q 041425 294 VAIFDFSVLRERIYLGSALGSILVI--VGMYILLWGKS 329 (366)
Q Consensus 294 a~~~~~~~~~e~~s~~~~iG~~lii--~g~~l~~~~~~ 329 (366)
+--+|..++++-.-+.+.++..|.+ +|.+...++++
T Consensus 126 ~~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~ 163 (184)
T 3rko_J 126 AKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 (184)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3468888999999999999988875 46555555443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=35.87 E-value=2.4e+02 Score=25.20 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHhhhhcccccc
Q 041425 112 ITFLLALPFGLEKVN 126 (366)
Q Consensus 112 ~~~lla~~~~~e~~~ 126 (366)
...++.+++.+|++.
T Consensus 198 ~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHCCCSST
T ss_pred HHHHHHHhhccCCHh
Confidence 344445556666544
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=34.60 E-value=59 Score=29.88 Aligned_cols=22 Identities=5% Similarity=-0.011 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHhhhhccccc
Q 041425 309 GSALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 309 ~~~iG~~lii~g~~l~~~~~~~ 330 (366)
..+.|..+++.|+.++...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456788888888777664443
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.39 E-value=28 Score=23.21 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhhhhccc
Q 041425 310 SALGSILVIVGMYILLWGK 328 (366)
Q Consensus 310 ~~iG~~lii~g~~l~~~~~ 328 (366)
.++++++.++|++++..+|
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3456677777877776544
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.00 E-value=49 Score=22.26 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhhhhccccc
Q 041425 310 SALGSILVIVGMYILLWGKSK 330 (366)
Q Consensus 310 ~~iG~~lii~g~~l~~~~~~~ 330 (366)
.++++++.++|++++..+|-|
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 345677778888887765544
No 11
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.54 E-value=50 Score=21.82 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHhhhhcccc
Q 041425 310 SALGSILVIVGMYILLWGKS 329 (366)
Q Consensus 310 ~~iG~~lii~g~~l~~~~~~ 329 (366)
.++++++.++|++++..+|-
T Consensus 22 LifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHH
T ss_pred hhhHHHHHHHHHHHHHcCcc
Confidence 34567777788877766543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=20.73 E-value=4.7e+02 Score=23.62 Aligned_cols=151 Identities=9% Similarity=-0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc-CCCchhHHHHHHHHHHHHHHHHHHHHhcCCCcccccCchhHHHHHHHHHHHHHHHH
Q 041425 190 IFLIAGCTTWSSWFLMQARIGKR-FPCQYSSTTIISFFGAIQSAILSLIIERNLPGWVLKGKLETIGVIYCGMVGSGLCY 268 (366)
Q Consensus 190 ~~~l~aa~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 268 (366)
.+.....+...+......++.++ +. .............+........ +.+. ..+...+..|+......-
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g-~r~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIG-ARPAVFWGGVLIMLGHIVLALP-----FGAS----ALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHSC-----CSTT----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHh-----hhHH----HHHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHhhcCcce---------eeeccchhHHHHHHHHHHHcC-CccchhhHHHHHHHHHHHhhhhccccchhhhhhhh
Q 041425 269 VGMSWCVKKRGPVF---------TSAFSPLTQIVVAIFDFSVLR-ERIYLGSALGSILVIVGMYILLWGKSKEIEEFDQM 338 (366)
Q Consensus 269 ~~~~~~~~~~~~~~---------~s~~~~~~pi~a~~~~~~~~~-e~~s~~~~iG~~lii~g~~l~~~~~~~~~~~~~~~ 338 (366)
.......+..++.. ......+...++..++-.+.+ ....+..++..++.+++.++....+++..++++++
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Q ss_pred hhhhhhhhhhhh
Q 041425 339 KQGQAAQQDERC 350 (366)
Q Consensus 339 ~~~~~~~~~~~~ 350 (366)
.+++.++++...
T Consensus 208 ~~~~~~~~~~~~ 219 (491)
T 4aps_A 208 PTDPLAPEEVKP 219 (491)
T ss_dssp CSCCCSHHHHHH
T ss_pred CCCccccchhHH
Done!