Query 041425
Match_columns 366
No_of_seqs 174 out of 1868
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 11:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041425.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041425hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 66.7 22 0.0016 30.0 11.1 19 196-214 69-87 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 42.3 69 0.005 24.6 10.3 29 292-320 95-123 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 34.2 1.2E+02 0.0085 24.9 24.9 16 267-282 361-376 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 23.1 41 0.003 16.1 2.9 18 186-203 2-19 (27)
5 d1pv7a_ f.38.1.2 (A:) Lactose 20.2 1.9E+02 0.014 22.7 10.5 32 13-44 16-49 (417)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 16.8 86 0.0062 23.5 5.0 30 293-322 78-107 (199)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 16.0 79 0.0057 16.4 3.7 23 181-203 13-35 (37)
8 d1pv7a_ f.38.1.2 (A:) Lactose 13.1 96 0.007 24.7 4.7 12 201-212 62-73 (417)
9 d1q90r_ f.23.12.1 (R:) ISP sub 7.0 2E+02 0.014 15.3 3.7 30 65-94 5-34 (39)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.5 6.9E+02 0.051 18.9 8.5 44 67-111 51-94 (248)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=66.67 E-value=22 Score=29.97 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 041425 196 CTTWSSWFLMQARIGKRFP 214 (366)
Q Consensus 196 a~~~a~~~v~~~~~~~~~~ 214 (366)
.+.+++......++.+++.
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3344444455555555544
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=42.34 E-value=69 Score=24.61 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCccchhhHHHHHHHHHH
Q 041425 292 IVVAIFDFSVLRERIYLGSALGSILVIVG 320 (366)
Q Consensus 292 i~a~~~~~~~~~e~~s~~~~iG~~lii~g 320 (366)
+.+.+.+..+.+.+++....+|.++.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34455667788999999998888776654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=34.16 E-value=1.2e+02 Score=24.88 Aligned_cols=16 Identities=0% Similarity=-0.303 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhcCcce
Q 041425 267 CYVGMSWCVKKRGPVF 282 (366)
Q Consensus 267 ~~~~~~~~~~~~~~~~ 282 (366)
....+....+..+...
T Consensus 361 ~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHcCHHH
Confidence 3344455555555543
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.13 E-value=41 Score=16.06 Aligned_cols=18 Identities=17% Similarity=0.490 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041425 186 IIGSIFLIAGCTTWSSWF 203 (366)
Q Consensus 186 ~~G~~~~l~aa~~~a~~~ 203 (366)
..|.+..-+++++||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 468888888899988873
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=20.15 E-value=1.9e+02 Score=22.65 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHh-cCCChHHHHHHH
Q 041425 13 MVAVNFGFATVNAFLR-KIID-RGLNHLVIVAYR 44 (366)
Q Consensus 13 ~~~~~~~~~~~~~~~k-~~~~-~~~~~~~~~~~r 44 (366)
.++..+.++....+.. +..+ .|.++.+....-
T Consensus 16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~ 49 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIF 49 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 3444455555444333 3434 378887765443
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.78 E-value=86 Score=23.51 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCccchhhHHHHHHHHHHHh
Q 041425 293 VVAIFDFSVLRERIYLGSALGSILVIVGMY 322 (366)
Q Consensus 293 ~a~~~~~~~~~e~~s~~~~iG~~lii~g~~ 322 (366)
........++|.+++.....+..+.+...+
T Consensus 78 ~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 78 LGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 333334567788888888877777665544
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.00 E-value=79 Score=16.44 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=16.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 041425 181 KTERWIIGSIFLIAGCTTWSSWF 203 (366)
Q Consensus 181 ~~~~~~~G~~~~l~aa~~~a~~~ 203 (366)
...+--+|.++.+.-++.++-|.
T Consensus 13 NrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHh
Confidence 34455689988888888887764
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=96 Score=24.72 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=5.1
Q ss_pred HHHHHHHHhccc
Q 041425 201 SWFLMQARIGKR 212 (366)
Q Consensus 201 ~~~v~~~~~~~~ 212 (366)
....+..|..+|
T Consensus 62 ~~G~l~Dr~grr 73 (417)
T d1pv7a_ 62 LFGLLSDKLGLR 73 (417)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCch
Confidence 334444444433
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.95 E-value=2e+02 Score=15.32 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041425 65 PKLTIHILCQLFFSALIGLTLTQYFLLRGL 94 (366)
Q Consensus 65 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 94 (366)
+...+|++..++..|.+.......++=++.
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYGA 34 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhccceeE
Confidence 445678888888887776555555444433
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.50 E-value=6.9e+02 Score=18.91 Aligned_cols=44 Identities=5% Similarity=-0.068 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccccCchhhhhhccchhH
Q 041425 67 LTIHILCQLFFSALIGLTLTQYFLLRGLEYTSATFLCAFLNTVPV 111 (366)
Q Consensus 67 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~ 111 (366)
.++|.....++.-+. +.+.-..|...+..++-+..-.+..-.-+
T Consensus 51 ~p~kyi~PG~~~l~~-Fvi~Pi~yT~~iaFTNy~tgh~ltk~~Ai 94 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGL-FVLFPLVCTIAIAFTNYSSTNQLTFERAQ 94 (248)
T ss_dssp TTHHHHHHHHHHHHH-HTHHHHHHHHHGGGBCCSSTTCBCHHHHH
T ss_pred cceehhhhHHHHHHH-HHHHhheeEEEEEEEEcCCCccccHHHHH
Confidence 456666665544444 37777888888888887776666554443
Done!